Query psy6932
Match_columns 150
No_of_seqs 110 out of 347
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:13:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jid_A Signal recognition part 100.0 2E-48 6.7E-53 296.2 12.0 120 1-120 1-121 (128)
2 1kvn_A SRP19; RNA binding prot 100.0 2.9E-40 1E-44 243.4 6.5 92 14-119 2-93 (104)
3 3dlu_A SRP19, signal recogniti 100.0 6.8E-37 2.3E-41 226.2 8.5 95 14-122 2-103 (106)
4 1lng_A SRP19, signal recogniti 100.0 2.4E-36 8.4E-41 216.2 8.0 85 16-114 1-86 (87)
5 3ktw_A SRP19, signal recogniti 100.0 1.2E-34 4E-39 215.2 8.9 91 12-120 15-106 (109)
6 2da7_A Zinc finger homeobox pr 47.2 12 0.00042 25.2 2.5 21 41-61 27-47 (71)
7 2al3_A TUG long isoform; TUG U 45.8 16 0.00055 25.6 3.0 28 32-60 19-47 (90)
8 3g12_A Putative lactoylglutath 31.2 44 0.0015 22.4 3.4 46 35-92 68-114 (128)
9 3e5d_A Putative glyoxalase I; 29.8 45 0.0015 21.4 3.1 49 35-92 73-122 (127)
10 2o38_A Hypothetical protein; a 29.7 50 0.0017 23.0 3.5 36 43-85 80-117 (120)
11 3l4r_A Allergen DOG 2, minor a 29.4 43 0.0015 24.3 3.2 51 10-60 95-145 (170)
12 1xki_A VON ebner'S gland prote 28.5 83 0.0028 22.2 4.6 51 10-60 87-137 (162)
13 3b7h_A Prophage LP1 protein 11 20.9 59 0.002 19.6 2.2 18 43-60 47-64 (78)
14 1epa_A Epididymal retinoic aci 20.9 50 0.0017 23.1 2.1 50 11-60 93-142 (164)
15 2rnn_A E3 SUMO-protein ligase 20.3 52 0.0018 23.9 2.1 20 41-60 37-56 (114)
No 1
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=100.00 E-value=2e-48 Score=296.19 Aligned_cols=120 Identities=52% Similarity=0.845 Sum_probs=111.1
Q ss_pred CCccCCCCCCCccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEe-cCCCCccccccCCCcc
Q psy6932 1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKEHFVRG 79 (150)
Q Consensus 1 ~~~~~~~~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE-~K~yPR~w~~d~~~~G 79 (150)
||-++.+.++|.++|+||||+|||+++|++||||||+++||+||+++||++||++|||++++| +|.|||+|++||+++|
T Consensus 1 ~~~~~~~~~~d~~r~~vIyP~Y~Ds~~tr~eGRRV~k~~aVenPt~~EI~~a~~~Lgl~~~vE~~K~yPr~w~~~~~~~G 80 (128)
T 1jid_A 1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRG 80 (128)
T ss_dssp ----CCCSTTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETTCCCTTCCCCCGGGCC
T ss_pred CCccCCCCCcCccceEEECcccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEecCCCCCccchhhcCCCC
Confidence 567788899999999999999999999999999999999999999999999999999999999 5999999999999999
Q ss_pred eEEEEeecCCCCCCCCCCCCHHHHHHHHHHHchhhhhccCC
Q psy6932 80 RARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK 120 (150)
Q Consensus 80 RVrV~l~~~~G~~~~~~~~~K~~Ll~~Ia~~I~~lrsR~~~ 120 (150)
||+|+++++||+|+||+|++|++||.+||++|+++|+|+.+
T Consensus 81 RVrV~lk~~dG~~~n~~~~sK~~Ll~~IA~~I~~lr~r~~~ 121 (128)
T 1jid_A 81 RVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQL 121 (128)
T ss_dssp EEEECCBCTTSCBSCTTCSSHHHHHHHHHHHGGGCTTC---
T ss_pred EEEEEEeCCCCCccCCcCCCHHHHHHHHHHHHHHhhccCCc
Confidence 99999999999999999999999999999999999999765
No 2
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=100.00 E-value=2.9e-40 Score=243.40 Aligned_cols=92 Identities=28% Similarity=0.469 Sum_probs=87.3
Q ss_pred ceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEecCCCCccccccCCCcceEEEEeecCCCCCC
Q psy6932 14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPV 93 (150)
Q Consensus 14 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~K~yPR~w~~d~~~~GRVrV~l~~~~G~~~ 93 (150)
+|+||||+|||+++|++||||||+++||+||+++||++||++|||++++|+|.|||+|| .++|||+|++.
T Consensus 2 ~~~vIyP~Y~Ds~~tr~eGRRv~k~~aV~nP~~~EI~~a~~~Lgl~~~vE~K~yPr~w~---~~~GRVrV~~~------- 71 (104)
T 1kvn_A 2 KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWW---EEGGRVVVEKR------- 71 (104)
T ss_dssp CCEEEETTTTCSSSCTTTTCCSCGGGCCSSCCHHHHHHHHHHHTSSEEECCCTTTCSSC---SSCCEEEESCC-------
T ss_pred CeEEEeeccccCCCChhhCCccCHHHhccCCCHHHHHHHHHHcCCCeEEecCCCCchhh---cCCCEEEEEeC-------
Confidence 59999999999999999999999999999999999999999999999999999999995 48999999874
Q ss_pred CCCCCCHHHHHHHHHHHchhhhhccC
Q psy6932 94 NPDFPTREAVMLHLGALIPKLKSRQG 119 (150)
Q Consensus 94 ~~~~~~K~~Ll~~Ia~~I~~lrsR~~ 119 (150)
++|.+||..||+.|+++++|+.
T Consensus 72 ----~~K~~ll~~Ia~~I~~~r~r~~ 93 (104)
T 1kvn_A 72 ----GTKTKLMIELARKIAEIREQKR 93 (104)
T ss_dssp ----SCSHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHhhcccc
Confidence 4799999999999999999984
No 3
>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B
Probab=100.00 E-value=6.8e-37 Score=226.20 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=86.3
Q ss_pred ceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCce-eEec-CCCCcc-----ccccCCCcceEEEEee
Q psy6932 14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY-HIEN-KLYPRE-----ISKEHFVRGRARVQLK 86 (150)
Q Consensus 14 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~-~iE~-K~yPR~-----w~~d~~~~GRVrV~l~ 86 (150)
..+||||+|||+++|++||||||+++||+||+++||++||++|||++ ++|+ |.|||+ || .++|||+|++.
T Consensus 2 ~~ivIyP~Y~Ds~~sr~eGRRV~k~~aV~nPt~~EI~~a~~~lgl~~~~vE~~K~yPr~~~~~~~~---~~~GRVrV~~~ 78 (106)
T 3dlu_A 2 GRFVVWPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNPRLSGIDEEL---RTFGMIVLESP 78 (106)
T ss_dssp CEEEECGGGGBTTSCGGGTCCSCTTTSBSSCCHHHHHHHHHHTTCEEEEEEEEEECC-------CC---EEEEEEEEECS
T ss_pred CcEEEeeccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCceEecCCCCCCCcccccccc---cCCcEEEEecC
Confidence 47899999999999999999999999999999999999999999999 9994 999999 65 38999999873
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHchhhhhccCCCC
Q psy6932 87 NDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQA 122 (150)
Q Consensus 87 ~~~G~~~~~~~~~K~~Ll~~Ia~~I~~lrsR~~~~~ 122 (150)
.+|.+||++||+.|+++|+|+..+-
T Consensus 79 -----------~~K~~ll~~Ia~~I~~lr~r~~~~~ 103 (106)
T 3dlu_A 79 -----------YGKSKSLKLIAQKIREFRRRSAGTL 103 (106)
T ss_dssp -----------SCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred -----------CCHHHHHHHHHHHHHHHhCCCCCCC
Confidence 5899999999999999999987764
No 4
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=100.00 E-value=2.4e-36 Score=216.24 Aligned_cols=85 Identities=32% Similarity=0.598 Sum_probs=78.5
Q ss_pred EEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcceEEEEeecCCCCCCC
Q psy6932 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRGRARVQLKNDDGSPVN 94 (150)
Q Consensus 16 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~GRVrV~l~~~~G~~~~ 94 (150)
+||||+|||+++|++||||||+++||+||+++||++||++|||++++|+ |+|||+||. .+|||+|++.+
T Consensus 1 ivIyP~Y~ds~~tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~E~~K~yPr~w~~---~~GRVrV~~~~------- 70 (87)
T 1lng_A 1 MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWE---ICGCVEVDYKG------- 70 (87)
T ss_dssp CEECGGGTBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEETTCCCGGGTTS---CCCEEECCCCS-------
T ss_pred CEEecccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEccCCCCCccccc---CCceEEEEeCC-------
Confidence 5899999999999999999999999999999999999999999999995 999999962 45999999853
Q ss_pred CCCCCHHHHHHHHHHHchhh
Q psy6932 95 PDFPTREAVMLHLGALIPKL 114 (150)
Q Consensus 95 ~~~~~K~~Ll~~Ia~~I~~l 114 (150)
+|.+||++||+.|+++
T Consensus 71 ----~K~~ll~~Ia~~i~~~ 86 (87)
T 1lng_A 71 ----NKLQLLKEICKIIKGK 86 (87)
T ss_dssp ----CHHHHHHHHHHHHTTC
T ss_pred ----CHHHHHHHHHHHHHhc
Confidence 5999999999999764
No 5
>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-34 Score=215.21 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=80.3
Q ss_pred ccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcceEEEEeecCCC
Q psy6932 12 VERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRGRARVQLKNDDG 90 (150)
Q Consensus 12 ~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~GRVrV~l~~~~G 90 (150)
...++||||+|||+ +|+++|||||++ |+||+++||++||++|||++++|+ |.|||+|| ++|||+|++.
T Consensus 15 ~~~~ivIyP~Y~Ds-~sr~eGRRVpk~--V~nP~~~EI~~a~~~Lgl~~~vE~~K~yPrdw~----~~GRVrV~~~---- 83 (109)
T 3ktw_A 15 EENRIVIWPSYFFS-PTRSKGRRLARI--PYKIKTEELVSTLRELGLDPIVIENKKYPRDRK----INFLIAVKKV---- 83 (109)
T ss_dssp GGTEEEECTHHHHC-SSGGGTCCSSCC--SSCCCHHHHHHHHHHTTCCCEEECSCCCSSCTT----CCCEEEEECS----
T ss_pred hCCeEEEeecccCC-cchhcCCccccc--CCCCCHHHHHHHHHHcCCCeEEccCCCCCcccC----CCCEEEEecC----
Confidence 45799999999999 999999999999 999999999999999999999995 99999994 9999999873
Q ss_pred CCCCCCCCCHHHHHHHHHHHchhhhhccCC
Q psy6932 91 SPVNPDFPTREAVMLHLGALIPKLKSRQGK 120 (150)
Q Consensus 91 ~~~~~~~~~K~~Ll~~Ia~~I~~lrsR~~~ 120 (150)
.+|.+||+.||+.|+++|.++..
T Consensus 84 -------~sK~~Llk~IA~~I~~~R~~~~~ 106 (109)
T 3ktw_A 84 -------KSKNYTLKIIHNALMGTRQTNPN 106 (109)
T ss_dssp -------SSHHHHHHHHHHHHCCC------
T ss_pred -------CCHHHHHHHHHHHHHHhhccCCC
Confidence 48999999999999999866543
No 6
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.16 E-value=12 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHcCCcee
Q psy6932 41 VDNPTYKDIDDVLSTTGLKYH 61 (150)
Q Consensus 41 V~~Pt~~EI~~A~~~Lgl~~~ 61 (150)
-..|+.+||.+++..+||+-.
T Consensus 27 n~~Ps~eei~~LA~~lgL~~~ 47 (71)
T 2da7_A 27 NMEPNSDELLKISIAVGLPQE 47 (71)
T ss_dssp CSSCCHHHHHHHHHHHTCCHH
T ss_pred CCCCCHHHHHHHHHHhCCCHH
Confidence 357999999999999999853
No 7
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=45.76 E-value=16 Score=25.57 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=19.6
Q ss_pred cccccccccCCCCCHHH-HHHHHHHcCCce
Q psy6932 32 GRRIPKAKAVDNPTYKD-IDDVLSTTGLKY 60 (150)
Q Consensus 32 GRRV~k~~aV~~Pt~~E-I~~A~~~Lgl~~ 60 (150)
|||.... +-++=++.| +.+||+++||+.
T Consensus 19 ~rr~~VK-vtp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 19 GRRHTVK-VTPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp SCEEEEC-CCTTSBHHHHHHHHHHHTTCCG
T ss_pred CcEEEEE-ECCCCCHHHHHHHHHHHhCCCh
Confidence 5664443 355667788 589999999963
No 8
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=31.16 E-value=44 Score=22.44 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=31.1
Q ss_pred ccccccCCCCCHHHHHHHHHHcCCc-eeEecCCCCccccccCCCcceEEEEeecCCCCC
Q psy6932 35 IPKAKAVDNPTYKDIDDVLSTTGLK-YHIENKLYPREISKEHFVRGRARVQLKNDDGSP 92 (150)
Q Consensus 35 V~k~~aV~~Pt~~EI~~A~~~Lgl~-~~iE~K~yPR~w~~d~~~~GRVrV~l~~~~G~~ 92 (150)
+.....|++ +++..+.++++|.. ++.++...| | |+. +.+.|.||..
T Consensus 68 ~~l~f~v~d--vd~~~~~l~~~G~~~~~~~p~~~~--~-------G~~-~~~~DPdGn~ 114 (128)
T 3g12_A 68 LQLGFQITD--LEKTVQELVKIPGAMCILDPTDMP--D-------GKK-AIVLDPDGHS 114 (128)
T ss_dssp EEEEEEESC--HHHHHHHHTTSTTCEEEEEEEECC----------CEE-EEEECTTCCE
T ss_pred eEEEEEeCC--HHHHHHHHHHCCCceeccCceeCC--C-------ccE-EEEECCCCCE
Confidence 334455655 99999999999999 665654333 2 444 6677888874
No 9
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=29.82 E-value=45 Score=21.37 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=31.5
Q ss_pred ccccccCCCCC-HHHHHHHHHHcCCceeEecCCCCccccccCCCcceEEEEeecCCCCC
Q psy6932 35 IPKAKAVDNPT-YKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSP 92 (150)
Q Consensus 35 V~k~~aV~~Pt-~~EI~~A~~~Lgl~~~iE~K~yPR~w~~d~~~~GRVrV~l~~~~G~~ 92 (150)
......|+++. +.++.+.+++.|+.+..++..++ .|.-.+.+.|.+|..
T Consensus 73 ~hi~~~v~d~~~v~~~~~~l~~~G~~~~~~~~~~~---------~g~~~~~~~DPdG~~ 122 (127)
T 3e5d_A 73 AHIAISTGTKEAVDELTEKLRQDGFAIAGEPRMTG---------DGYYESVVLDPEGNR 122 (127)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEECT---------TSCEEEEEECTTSCE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCeEecCcccCC---------CCcEEEEEECCCCCE
Confidence 34455566655 88889999999999876643222 243334467888864
No 10
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=29.72 E-value=50 Score=23.05 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHcCCceeEe--cCCCCccccccCCCcceEEEEe
Q psy6932 43 NPTYKDIDDVLSTTGLKYHIE--NKLYPREISKEHFVRGRARVQL 85 (150)
Q Consensus 43 ~Pt~~EI~~A~~~Lgl~~~iE--~K~yPR~w~~d~~~~GRVrV~l 85 (150)
+|++..+..+|..||+++.+- +...| ...|+|.|-.
T Consensus 80 ~~s~~~l~~ia~~Lgv~~~~l~~~~~~~-------~~~g~~~~~~ 117 (120)
T 2o38_A 80 GFSVERLMTLLNALDQDVEIVIRKKPRS-------RAAARISVVA 117 (120)
T ss_dssp TCCHHHHHHHHHHTTEEEEEEEEECCTT-------CSCCCEEEEE
T ss_pred CCCHHHHHHHHHHhCCCcEEeecCCCcc-------cccCceEEee
Confidence 799999999999999987543 34444 3568888854
No 11
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=29.43 E-value=43 Score=24.35 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=33.6
Q ss_pred CCccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCce
Q psy6932 10 TDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60 (150)
Q Consensus 10 ~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 60 (150)
.|++.+.++|-+-.....+..----+++..-++...+++..++|+.+||+.
T Consensus 95 TDY~~yaiv~~~~~~~~~~~~~~~ll~R~~~~~~e~~~~f~~~~~~~Gl~~ 145 (170)
T 3l4r_A 95 VDPKSYLILYMINQYNDDTSLVAHLMVRDLSRQQDFLPAFESVCEDIGLHK 145 (170)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEEEESCGGGTTTTHHHHHHHHHHTTCCG
T ss_pred ecCCcEEEEEEEeccCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 356677777765443322222223345666677889999999999999964
No 12
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=28.48 E-value=83 Score=22.20 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=30.7
Q ss_pred CCccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCce
Q psy6932 10 TDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60 (150)
Q Consensus 10 ~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 60 (150)
.|+..+.++|-+-........-.--++++.-++.-..+++.+.|+.+||+.
T Consensus 87 tdY~~yaiv~~~~~~~g~~~~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~ 137 (162)
T 1xki_A 87 SHVKDHYIFYSEGELHGKPVRGVKLVGRDPKNNLEALEDFEKAAGARGLST 137 (162)
T ss_dssp CSSTTEEEEEEEEC--CCCEEEEEEEESSSSCCCCCHHHHHHHHHHTTCTT
T ss_pred cCCCCEEEEEEEcccCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 467777777754311111111112235556666778899999999999974
No 13
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.92 E-value=59 Score=19.62 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHcCCce
Q psy6932 43 NPTYKDIDDVLSTTGLKY 60 (150)
Q Consensus 43 ~Pt~~EI~~A~~~Lgl~~ 60 (150)
+|+...+..+|..||+++
T Consensus 47 ~~~~~~l~~ia~~l~~~~ 64 (78)
T 3b7h_A 47 RPTITTIRKVCGTLGISV 64 (78)
T ss_dssp CCCHHHHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHHHcCCCH
Confidence 799999999999999975
No 14
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=20.90 E-value=50 Score=23.13 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=28.0
Q ss_pred CccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCce
Q psy6932 11 DVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60 (150)
Q Consensus 11 ~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 60 (150)
++.++.++|-+-+....++.-.=-++++.-++.-.++++.+.|+.+||+.
T Consensus 93 dy~~Y~i~~~~~~~~~~~~~~~~llsR~~~l~~~~~~~~~~~~~~~G~~~ 142 (164)
T 1epa_A 93 DYLTYAIIDITSLVAGAVHRTMKLYSRSLDDNGEALYNFRKITSDHGFSE 142 (164)
T ss_dssp CSSSEEEEEEEEEETTEEEEEEEEEESCSSCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCCEEEEEEEeccCCeeeEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 55667777655332222222222234444444445677888999999964
No 15
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=20.31 E-value=52 Score=23.94 Aligned_cols=20 Identities=5% Similarity=0.208 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHcCCce
Q psy6932 41 VDNPTYKDIDDVLSTTGLKY 60 (150)
Q Consensus 41 V~~Pt~~EI~~A~~~Lgl~~ 60 (150)
+..=++.|+.++|+.+||++
T Consensus 37 l~kLtVaELK~~cr~~GL~~ 56 (114)
T 2rnn_A 37 MELLKVSELKDICRSVSFPV 56 (114)
T ss_dssp HTTCCHHHHHHHHHHTTCCT
T ss_pred HHHhhHHHHHHHHHHcCCCc
Confidence 34568899999999999874
Done!