RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6932
(150 letters)
>gnl|CDD|216787 pfam01922, SRP19, SRP19 protein. The signal recognition particle
(SRP) binds to the signal peptide of proteins as they
are being translated. The binding of the SRP halts
translation and the complex is then transported to the
endoplasmic reticulum's cytoplasmic surface. The SRP
then aids translocation of the protein through the ER
membrane. The SRP is a ribonucleoprotein that is
composed of a small RNA and several proteins. One of
these proteins is the SRP19 protein (Sec65 in yeast).
Length = 92
Score = 108 bits (272), Expect = 8e-32
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 10/101 (9%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKE 74
+ IYPAY++ K++ +EGRR+PK AV+NPT ++I D GL +E K YPR+
Sbjct: 1 IVIYPAYLDSKRSRSEGRRVPKELAVENPTAEEIADACRKLGLPVVVEPEKKYPRD---W 57
Query: 75 HFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLK 115
RGR RVQLK+DD T+++++ + I +L+
Sbjct: 58 WENRGRVRVQLKDDD------KIGTKKSLLKKIAEKIKELR 92
>gnl|CDD|224318 COG1400, SEC65, Signal recognition particle 19 kDa protein
[Intracellular trafficking and secretion].
Length = 93
Score = 62.4 bits (152), Expect = 1e-13
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY-HIENKLYPRE 70
++PAY + + +EGRR+PK AV+NP+ ++I + L GLK +K YPR
Sbjct: 5 VLWPAYFDSDLSRSEGRRVPKELAVENPSLEEIAEALRELGLKPKVERDKKYPRL 59
>gnl|CDD|179110 PRK00754, PRK00754, signal recognition particle protein Srp19;
Provisional.
Length = 95
Score = 47.8 bits (114), Expect = 5e-08
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPR 69
I+PAYI+ ++ +EGR I + AV P ++I + GL +E K YPR
Sbjct: 9 IWPAYIDSTRSRSEGRIISRKLAVKEPRLEEIIEAAEKLGLNPEVEPDKAYPR 61
>gnl|CDD|235155 PRK03745, PRK03745, signal recognition particle protein Srp19;
Provisional.
Length = 100
Score = 36.3 bits (84), Expect = 0.001
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 15 WVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY--HIENKLYPR--E 70
W + ++RK GR +PK AV+ PT ++I D G K KL PR
Sbjct: 7 WPSELDSRLSRKY----GRIVPKNLAVERPTLEEIVDAAEALGFKVIEVDREKLNPRLSG 62
Query: 71 ISKEHFVRGRARVQ 84
I +E RGR ++
Sbjct: 63 IDEELRTRGRIVIE 76
>gnl|CDD|214623 smart00330, PIPKc, Phosphatidylinositol phosphate kinases.
Length = 342
Score = 30.4 bits (69), Expect = 0.31
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 32 GRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKND 88
GR K K + P KD+D L +Y ++K+ ++ Q+K D
Sbjct: 162 GREADKKKVKELPVLKDLD-------LVEMWNQPIYVDPLAKKALLK-----QIKRD 206
>gnl|CDD|220848 pfam10681, Rot1, Chaperone for protein-folding within the ER,
fungal. This conserved fungal family is an essential
molecular chaperone in the endoplasmic reticulum.
Molecular chaperones transiently interact with unfolded
proteins to inhibit their self-aggregation and to
support their folding and/or assembly. Rot1 is a general
chaperone with some substrate specificity, its
substrates being the structurally unrelated Kre5 Kre6
Big1 Atg22, which are type I, type II, and polytopic
membrane proteins. The dependencies of each for Rot1 do
not share similarities. However, their folding does
require BiP, and one of these proteins was
simultaneously associated with both Rot1 and BiP. In
addition, Rot1 may cooperate with BiP/Kar2 in the
folding of Kre6.
Length = 211
Score = 28.5 bits (64), Expect = 1.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 79 GRARVQLKNDDGSPVNPDFPT-REAVMLHLGALIPKLKSRQGK 120
GR R+QL DGSP+ P + R ML L P + K
Sbjct: 125 GRYRLQLYQFDGSPMQPMYLAYRPPQMLPTQTLNPTDTASAKK 167
>gnl|CDD|224480 COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism].
Length = 212
Score = 26.5 bits (59), Expect = 5.1
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 50 DDVLSTTGLKYHIEN----KLYPREISKEHFVRGRARVQLKND 88
L+ G KY ++N R IS E F+ V LK+
Sbjct: 160 VAGLTIKGAKYPLKNADLPFGSSRSISNE-FIGDPVTVSLKSG 201
>gnl|CDD|205403 pfam13222, DUF4030, Protein of unknown function (DUF4030). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 164 and 197 amino
acids in length.
Length = 142
Score = 25.5 bits (56), Expect = 8.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 36 PKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREI 71
P AK K+++++L T +K IEN Y EI
Sbjct: 100 PGAKEFGKKIEKEVNNLLKTEEVKKWIENDSYTIEI 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.397
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,728,602
Number of extensions: 694453
Number of successful extensions: 409
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 12
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.6 bits)