RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6932
         (150 letters)



>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score =  146 bits (369), Expect = 7e-47
 Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 6   TKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-N 64
            +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL   +E N
Sbjct: 2   ARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKN 61

Query: 65  KLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR 117
           K+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R
Sbjct: 62  KMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR 114


>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 104

 Score = 94.0 bits (234), Expect = 1e-26
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 14/117 (11%)

Query: 14  RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISK 73
           +   ++   ++ KK+ AEGRRIP+  AV N    ++ +     GLK+  E K YP+   +
Sbjct: 2   KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWE 61

Query: 74  EHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQR 130
           E    GR  V+              T+  +M+ L   I +++ ++ +Q   ++ +++
Sbjct: 62  E---GGRVVVE-----------KRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104


>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii
          [TaxId: 2190]}
          Length = 87

 Score = 83.2 bits (206), Expect = 2e-22
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKE 74
          + I+P+YI++KK+  EGR++P+  A++ P+ KDI+  L   GL+  I  +K YPR+  + 
Sbjct: 1  MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEI 60

Query: 75 HFVRGRARVQLKN 87
              G   V  K 
Sbjct: 61 ---CGCVEVDYKG 70


>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
          {Archaeon Aeropyrum pernix [TaxId: 56636]}
          Length = 234

 Score = 24.2 bits (52), Expect = 8.0
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNP 44
            + P Y  +   LAE   +     +  P
Sbjct: 53 AVLTPVYTVKISGLAEKLGVKLCSVIGFP 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 553,593
Number of extensions: 23943
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 4
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.0 bits)