Query psy6934
Match_columns 113
No_of_seqs 130 out of 1204
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 22:26:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 5.2E-20 1.1E-24 113.8 10.9 103 3-112 50-156 (160)
2 KOG0027|consensus 99.8 6E-20 1.3E-24 113.8 11.0 104 3-112 38-149 (151)
3 KOG0030|consensus 99.7 6.2E-16 1.3E-20 92.6 9.7 104 3-112 41-151 (152)
4 KOG0028|consensus 99.7 1.1E-15 2.4E-20 93.5 9.1 100 6-111 66-169 (172)
5 PTZ00183 centrin; Provisional 99.7 4.3E-15 9.3E-20 92.0 11.2 103 4-112 48-154 (158)
6 PTZ00184 calmodulin; Provision 99.6 4.5E-15 9.8E-20 90.9 10.6 103 4-112 42-148 (149)
7 KOG0034|consensus 99.6 1.1E-14 2.5E-19 92.6 9.6 100 11-112 68-175 (187)
8 KOG0031|consensus 99.6 5.7E-14 1.2E-18 85.6 10.6 97 4-111 63-164 (171)
9 KOG0037|consensus 99.6 5.1E-14 1.1E-18 90.2 9.6 94 4-111 89-187 (221)
10 KOG0044|consensus 99.5 1.8E-13 4E-18 87.3 8.2 100 5-111 60-174 (193)
11 KOG0038|consensus 99.4 1.8E-12 3.9E-17 78.6 5.3 98 13-112 75-177 (189)
12 PF13499 EF-hand_7: EF-hand do 99.3 1.3E-12 2.9E-17 70.1 3.6 61 11-72 2-65 (66)
13 KOG0027|consensus 99.3 5.1E-11 1.1E-15 73.8 9.5 97 8-111 7-112 (151)
14 KOG0040|consensus 99.3 5.5E-11 1.2E-15 92.5 10.6 112 1-113 2288-2399(2399)
15 PF13499 EF-hand_7: EF-hand do 99.3 2.5E-11 5.4E-16 65.1 5.8 62 48-110 1-66 (66)
16 COG5126 FRQ1 Ca2+-binding prot 99.2 2.2E-10 4.7E-15 71.2 10.2 98 5-110 13-118 (160)
17 KOG0036|consensus 99.2 6.8E-11 1.5E-15 82.1 8.6 94 6-111 48-145 (463)
18 PTZ00183 centrin; Provisional 99.2 2.4E-10 5.1E-15 70.7 10.3 96 9-111 17-117 (158)
19 cd05022 S-100A13 S-100A13: S-1 99.2 4.1E-11 8.8E-16 68.0 5.5 58 48-110 9-73 (89)
20 PTZ00184 calmodulin; Provision 99.2 5.9E-10 1.3E-14 68.1 10.4 95 9-110 11-110 (149)
21 KOG0044|consensus 99.2 6.6E-10 1.4E-14 71.1 10.6 102 4-111 21-127 (193)
22 KOG4223|consensus 99.1 5.3E-10 1.1E-14 75.6 7.4 103 9-112 113-228 (325)
23 cd05027 S-100B S-100B: S-100B 99.1 5.2E-10 1.1E-14 63.4 5.7 58 48-110 9-77 (88)
24 PLN02964 phosphatidylserine de 99.1 1.2E-09 2.6E-14 80.6 8.7 69 5-75 172-243 (644)
25 cd05022 S-100A13 S-100A13: S-1 99.0 4.1E-09 9E-14 59.8 7.3 68 9-77 8-77 (89)
26 cd05026 S-100Z S-100Z: S-100Z 99.0 1.7E-09 3.8E-14 61.9 5.6 67 10-77 11-83 (93)
27 cd00052 EH Eps15 homology doma 98.9 3.5E-09 7.5E-14 56.6 5.4 60 12-75 2-61 (67)
28 smart00027 EH Eps15 homology d 98.9 4.1E-09 8.9E-14 60.6 5.8 64 9-76 10-73 (96)
29 cd05026 S-100Z S-100Z: S-100Z 98.9 1.6E-08 3.6E-13 57.8 8.0 59 48-111 11-80 (93)
30 PLN02964 phosphatidylserine de 98.9 1.4E-08 3.1E-13 75.1 9.3 93 9-111 143-242 (644)
31 cd05027 S-100B S-100B: S-100B 98.9 2.5E-08 5.5E-13 56.5 8.3 68 9-77 8-81 (88)
32 cd05025 S-100A1 S-100A1: S-100 98.9 5.2E-09 1.1E-13 59.7 5.4 68 9-77 9-82 (92)
33 cd05031 S-100A10_like S-100A10 98.9 7.1E-09 1.5E-13 59.4 5.6 68 9-77 8-81 (94)
34 KOG4223|consensus 98.9 1.1E-08 2.4E-13 69.3 7.3 93 11-108 202-301 (325)
35 cd00051 EFh EF-hand, calcium b 98.9 1.8E-08 3.9E-13 52.2 6.4 61 11-73 2-62 (63)
36 smart00027 EH Eps15 homology d 98.9 4.3E-08 9.4E-13 56.3 8.4 60 47-111 10-71 (96)
37 cd00213 S-100 S-100: S-100 dom 98.8 2.7E-08 5.9E-13 56.2 7.2 68 8-76 7-80 (88)
38 cd05031 S-100A10_like S-100A10 98.8 7.1E-08 1.5E-12 55.2 9.0 59 48-111 9-78 (94)
39 KOG0028|consensus 98.8 9.5E-08 2.1E-12 59.0 9.6 95 9-110 33-132 (172)
40 cd00213 S-100 S-100: S-100 dom 98.8 1.7E-08 3.7E-13 57.0 6.0 60 47-111 8-78 (88)
41 cd00252 SPARC_EC SPARC_EC; ext 98.8 1.5E-08 3.2E-13 60.2 5.8 61 46-111 47-107 (116)
42 cd05025 S-100A1 S-100A1: S-100 98.8 6.7E-08 1.5E-12 55.1 8.4 60 47-111 9-79 (92)
43 cd00052 EH Eps15 homology doma 98.8 4.2E-08 9E-13 52.3 7.0 57 50-111 2-60 (67)
44 cd05029 S-100A6 S-100A6: S-100 98.8 1.5E-08 3.3E-13 57.4 5.2 66 11-77 12-81 (88)
45 cd05023 S-100A11 S-100A11: S-1 98.8 2.7E-08 5.8E-13 56.5 5.9 28 48-75 10-39 (89)
46 PF00036 EF-hand_1: EF hand; 98.8 8.8E-09 1.9E-13 46.4 2.9 26 10-35 1-26 (29)
47 cd00252 SPARC_EC SPARC_EC; ext 98.8 7.4E-08 1.6E-12 57.2 7.6 60 8-73 47-106 (116)
48 PF13833 EF-hand_8: EF-hand do 98.8 7.2E-08 1.6E-12 49.5 6.5 51 23-75 2-53 (54)
49 PF00036 EF-hand_1: EF hand; 98.8 1.9E-08 4.1E-13 45.3 3.7 29 48-76 1-29 (29)
50 cd05029 S-100A6 S-100A6: S-100 98.7 1.7E-07 3.7E-12 53.1 8.2 59 48-111 11-78 (88)
51 PF08726 EFhand_Ca_insen: Ca2+ 98.7 9E-09 1.9E-13 55.4 2.7 68 43-112 2-69 (69)
52 cd05023 S-100A11 S-100A11: S-1 98.7 4E-07 8.7E-12 51.7 8.1 68 9-77 9-82 (89)
53 cd00051 EFh EF-hand, calcium b 98.6 2.3E-07 5E-12 47.9 6.0 57 49-110 2-62 (63)
54 PF13405 EF-hand_6: EF-hand do 98.6 4.8E-08 1E-12 44.6 2.8 27 48-74 1-27 (31)
55 KOG0037|consensus 98.6 1.4E-06 3.1E-11 56.4 10.2 97 7-111 55-151 (221)
56 KOG0377|consensus 98.5 1.2E-06 2.7E-11 62.1 9.5 97 9-111 464-614 (631)
57 KOG0031|consensus 98.5 6.1E-07 1.3E-11 55.2 6.1 41 47-87 32-76 (171)
58 cd05030 calgranulins Calgranul 98.5 1.3E-06 2.7E-11 49.5 7.0 66 10-76 9-80 (88)
59 KOG0036|consensus 98.4 5.7E-06 1.2E-10 58.2 10.5 95 9-110 14-108 (463)
60 cd05030 calgranulins Calgranul 98.4 1.5E-06 3.2E-11 49.2 6.1 60 47-111 8-78 (88)
61 PF13833 EF-hand_8: EF-hand do 98.4 1.3E-06 2.7E-11 44.8 4.6 33 3-35 18-51 (54)
62 KOG0034|consensus 98.3 3.8E-06 8.2E-11 53.8 7.5 67 9-76 104-176 (187)
63 PF14658 EF-hand_9: EF-hand do 98.3 4.9E-06 1.1E-10 44.3 6.5 58 15-73 4-62 (66)
64 PF14658 EF-hand_9: EF-hand do 98.3 1.8E-06 3.9E-11 46.0 4.7 57 51-111 2-63 (66)
65 KOG2643|consensus 98.3 6.4E-07 1.4E-11 63.1 3.8 51 19-73 209-259 (489)
66 PF13202 EF-hand_5: EF hand; P 98.3 6.7E-07 1.5E-11 38.8 2.5 21 51-71 3-23 (25)
67 cd05024 S-100A10 S-100A10: A s 98.3 5.1E-06 1.1E-10 47.1 6.4 57 48-110 9-74 (91)
68 PRK12309 transaldolase/EF-hand 98.3 3.3E-06 7.1E-11 59.7 6.8 71 26-110 313-383 (391)
69 PF13202 EF-hand_5: EF hand; P 98.3 2E-06 4.4E-11 37.3 3.5 25 11-35 1-25 (25)
70 KOG4666|consensus 98.3 3.7E-06 8.1E-11 57.5 6.2 96 9-110 259-357 (412)
71 KOG0030|consensus 98.2 3.4E-05 7.4E-10 46.8 8.6 96 9-111 11-115 (152)
72 KOG0751|consensus 98.0 1E-05 2.3E-10 58.2 4.9 69 4-76 68-137 (694)
73 KOG2562|consensus 98.0 1.4E-05 3.1E-10 56.9 5.5 97 7-109 309-421 (493)
74 KOG0041|consensus 98.0 1.3E-05 2.7E-10 51.6 4.6 56 48-108 100-159 (244)
75 PF13405 EF-hand_6: EF-hand do 98.0 1.4E-05 3.1E-10 36.2 3.6 26 10-35 1-26 (31)
76 KOG0377|consensus 98.0 5.2E-05 1.1E-09 54.1 7.6 68 8-75 546-615 (631)
77 KOG2643|consensus 98.0 1.3E-05 2.7E-10 56.8 4.5 103 5-112 229-346 (489)
78 PRK12309 transaldolase/EF-hand 97.9 6.3E-05 1.4E-09 53.3 6.9 54 7-75 332-385 (391)
79 PF14788 EF-hand_10: EF hand; 97.8 0.00011 2.5E-09 37.1 5.1 50 25-76 1-50 (51)
80 KOG0041|consensus 97.7 0.00018 3.9E-09 46.4 6.6 66 9-76 99-164 (244)
81 PF12763 EF-hand_4: Cytoskelet 97.7 0.00021 4.5E-09 41.7 6.3 63 9-76 10-72 (104)
82 cd05024 S-100A10 S-100A10: A s 97.7 0.00059 1.3E-08 38.8 7.7 66 11-77 10-78 (91)
83 KOG4065|consensus 97.7 0.00013 2.9E-09 43.0 5.2 58 51-109 71-142 (144)
84 KOG4251|consensus 97.6 0.00021 4.5E-09 47.6 5.9 64 45-109 99-165 (362)
85 KOG4251|consensus 97.6 6.1E-05 1.3E-09 50.0 3.4 48 64-112 216-264 (362)
86 smart00054 EFh EF-hand, calciu 97.6 0.0001 2.3E-09 31.6 2.7 24 50-73 3-26 (29)
87 KOG0040|consensus 97.5 0.00053 1.2E-08 55.3 7.7 73 4-76 2245-2325(2399)
88 PF10591 SPARC_Ca_bdg: Secrete 97.5 2.4E-05 5.1E-10 46.3 -0.0 61 44-108 51-112 (113)
89 PF12763 EF-hand_4: Cytoskelet 97.4 0.00057 1.2E-08 39.9 5.1 60 46-111 9-70 (104)
90 smart00054 EFh EF-hand, calciu 97.4 0.00027 5.8E-09 30.2 3.0 26 10-35 1-26 (29)
91 PF09279 EF-hand_like: Phospho 97.4 0.00035 7.5E-09 38.9 3.8 63 10-74 1-68 (83)
92 PF10591 SPARC_Ca_bdg: Secrete 97.3 0.00013 2.7E-09 43.2 1.8 59 9-71 54-112 (113)
93 PF09279 EF-hand_like: Phospho 97.2 0.0012 2.5E-08 36.7 4.9 62 48-112 1-69 (83)
94 KOG0046|consensus 97.1 0.0016 3.6E-08 47.5 5.8 56 21-76 30-86 (627)
95 KOG1029|consensus 97.1 0.0036 7.8E-08 47.8 7.5 60 48-111 196-256 (1118)
96 PLN02952 phosphoinositide phos 97.0 0.0052 1.1E-07 46.0 7.6 90 22-112 13-110 (599)
97 KOG0038|consensus 96.7 0.0064 1.4E-07 37.6 5.0 60 15-75 114-177 (189)
98 PF14788 EF-hand_10: EF hand; 96.7 0.0035 7.6E-08 31.7 3.3 33 3-35 15-47 (51)
99 KOG2562|consensus 96.6 0.0059 1.3E-07 44.0 5.1 101 11-112 227-343 (493)
100 KOG0035|consensus 96.4 0.029 6.3E-07 43.7 7.9 96 10-111 789-885 (890)
101 KOG0169|consensus 96.1 0.022 4.7E-07 43.4 6.1 94 6-107 133-227 (746)
102 KOG0169|consensus 95.6 0.12 2.7E-06 39.5 8.2 100 6-112 169-274 (746)
103 KOG0751|consensus 95.5 0.033 7.2E-07 40.8 4.7 69 8-76 107-208 (694)
104 KOG4578|consensus 95.5 0.012 2.6E-07 40.9 2.3 60 48-111 334-397 (421)
105 PF05042 Caleosin: Caleosin re 95.3 0.19 4.2E-06 31.9 7.1 67 5-73 92-164 (174)
106 KOG4065|consensus 95.1 0.23 5E-06 29.6 6.6 69 4-72 61-142 (144)
107 KOG4578|consensus 95.0 0.018 3.8E-07 40.1 2.1 64 11-75 335-398 (421)
108 KOG1265|consensus 94.8 0.15 3.2E-06 40.1 6.6 68 44-112 218-299 (1189)
109 KOG0046|consensus 94.6 0.25 5.4E-06 36.7 7.1 59 47-111 19-84 (627)
110 KOG3555|consensus 94.6 0.086 1.9E-06 37.0 4.6 62 9-76 250-311 (434)
111 PF09069 EF-hand_3: EF-hand; 93.1 0.92 2E-05 25.8 6.3 58 47-112 3-75 (90)
112 PF08976 DUF1880: Domain of un 93.0 0.12 2.6E-06 30.6 2.6 30 6-35 4-33 (118)
113 KOG4347|consensus 92.8 0.2 4.3E-06 37.9 4.0 58 9-69 555-612 (671)
114 PF05517 p25-alpha: p25-alpha 91.7 0.41 8.8E-06 29.9 4.1 35 2-36 34-68 (154)
115 KOG1955|consensus 91.5 0.47 1E-05 35.1 4.6 56 15-74 237-292 (737)
116 PLN02222 phosphoinositide phos 91.5 0.71 1.5E-05 34.9 5.7 67 6-75 22-90 (581)
117 KOG3555|consensus 91.4 0.31 6.8E-06 34.4 3.5 61 45-110 248-308 (434)
118 PLN02228 Phosphoinositide phos 91.3 0.96 2.1E-05 34.1 6.2 67 5-74 20-91 (567)
119 PLN02228 Phosphoinositide phos 90.8 2.9 6.3E-05 31.6 8.3 69 41-112 18-92 (567)
120 KOG1707|consensus 90.7 1.3 2.9E-05 33.4 6.4 58 47-108 315-373 (625)
121 PLN02230 phosphoinositide phos 90.2 1.1 2.3E-05 34.1 5.6 70 42-112 24-102 (598)
122 KOG3866|consensus 89.4 0.33 7.1E-06 33.8 2.3 57 52-109 249-321 (442)
123 KOG2243|consensus 88.9 0.7 1.5E-05 38.7 4.0 54 52-111 4062-4119(5019)
124 PF05517 p25-alpha: p25-alpha 88.8 1.1 2.4E-05 27.9 4.2 67 11-77 1-71 (154)
125 KOG1029|consensus 87.7 1.1 2.5E-05 35.0 4.3 61 10-74 196-256 (1118)
126 KOG1955|consensus 87.7 1.6 3.4E-05 32.6 4.8 60 47-111 231-292 (737)
127 KOG0035|consensus 86.5 2.1 4.5E-05 34.0 5.2 63 47-110 747-814 (890)
128 PLN02223 phosphoinositide phos 86.5 2.6 5.6E-05 31.6 5.5 70 42-112 11-92 (537)
129 PLN02222 phosphoinositide phos 86.0 6.2 0.00014 30.0 7.3 65 42-112 20-90 (581)
130 KOG4347|consensus 85.8 1.7 3.6E-05 33.2 4.2 51 26-77 535-585 (671)
131 PF05042 Caleosin: Caleosin re 82.0 5.7 0.00012 25.4 4.9 30 47-76 96-125 (174)
132 PF12174 RST: RCD1-SRO-TAF4 (R 81.0 3.9 8.5E-05 22.0 3.5 58 24-86 7-65 (70)
133 PLN02952 phosphoinositide phos 79.9 18 0.0004 27.8 7.7 67 7-75 36-110 (599)
134 PLN02230 phosphoinositide phos 79.4 22 0.00048 27.3 8.0 69 5-75 25-102 (598)
135 KOG4666|consensus 79.2 4.1 8.9E-05 28.8 3.9 68 7-77 294-361 (412)
136 PF00404 Dockerin_1: Dockerin 77.9 3.4 7.5E-05 16.8 2.1 13 57-69 1-13 (21)
137 KOG3866|consensus 76.7 5 0.00011 28.2 3.8 60 14-73 249-322 (442)
138 KOG0998|consensus 75.2 1.6 3.4E-05 34.6 1.3 61 10-74 284-344 (847)
139 PF14513 DAG_kinase_N: Diacylg 74.5 10 0.00022 23.3 4.4 50 9-59 25-81 (138)
140 cd07313 terB_like_2 tellurium 73.9 6.5 0.00014 22.3 3.4 51 23-75 13-65 (104)
141 KOG4286|consensus 73.5 8.2 0.00018 30.4 4.5 61 12-75 473-533 (966)
142 PF01023 S_100: S-100/ICaBP ty 72.7 7.8 0.00017 18.8 3.0 29 48-76 7-37 (44)
143 PF09068 EF-hand_2: EF hand; 69.4 5.4 0.00012 24.1 2.4 66 9-75 41-125 (127)
144 KOG0039|consensus 69.3 21 0.00046 27.6 6.0 45 23-76 2-46 (646)
145 KOG2243|consensus 68.9 15 0.00033 31.6 5.2 59 14-75 4062-4120(5019)
146 KOG2871|consensus 68.8 5.6 0.00012 28.6 2.6 33 45-77 307-339 (449)
147 PF07879 PHB_acc_N: PHB/PHA ac 68.7 3.1 6.8E-05 22.0 1.1 22 54-75 10-31 (64)
148 KOG4403|consensus 65.8 22 0.00047 26.3 5.0 66 5-75 64-129 (575)
149 KOG1954|consensus 65.2 6.1 0.00013 28.7 2.3 22 48-69 478-499 (532)
150 KOG4070|consensus 64.6 9.1 0.0002 24.0 2.7 52 5-56 53-107 (180)
151 KOG0042|consensus 64.3 24 0.00052 27.1 5.2 69 6-76 587-658 (680)
152 KOG0042|consensus 63.6 8.8 0.00019 29.3 2.9 57 48-110 594-655 (680)
153 KOG2871|consensus 63.3 18 0.00038 26.2 4.2 63 6-69 306-368 (449)
154 PF08963 DUF1878: Protein of u 61.6 6.4 0.00014 23.3 1.6 34 2-35 34-75 (113)
155 cd06404 PB1_aPKC PB1 domain is 59.6 27 0.00058 19.5 3.7 20 45-64 57-76 (83)
156 PLN02223 phosphoinositide phos 57.2 85 0.0018 24.0 7.5 70 5-75 12-92 (537)
157 KOG4403|consensus 53.1 22 0.00048 26.3 3.4 55 21-76 40-97 (575)
158 PF07499 RuvA_C: RuvA, C-termi 51.7 6.2 0.00014 19.3 0.4 31 2-34 11-41 (47)
159 PF10897 DUF2713: Protein of u 49.0 76 0.0017 21.0 5.1 42 23-65 175-227 (246)
160 TIGR01848 PHA_reg_PhaR polyhyd 48.9 11 0.00025 22.0 1.2 22 54-75 10-31 (107)
161 PF02761 Cbl_N2: CBL proto-onc 48.4 49 0.0011 18.6 5.9 67 5-74 3-69 (85)
162 KOG1264|consensus 46.9 52 0.0011 26.7 4.7 90 21-112 192-293 (1267)
163 PF10668 Phage_terminase: Phag 45.3 24 0.00051 18.4 2.0 25 50-75 10-34 (60)
164 KOG4004|consensus 44.8 11 0.00023 24.9 0.8 54 51-107 191-245 (259)
165 KOG0869|consensus 42.0 36 0.00077 21.5 2.7 26 52-77 75-100 (168)
166 TIGR02675 tape_meas_nterm tape 41.6 31 0.00067 18.7 2.2 14 22-35 27-40 (75)
167 COG5562 Phage envelope protein 39.5 21 0.00046 21.9 1.4 17 19-35 82-98 (137)
168 KOG0113|consensus 39.2 26 0.00055 24.6 1.9 47 9-56 79-125 (335)
169 PF09373 PMBR: Pseudomurein-bi 37.9 37 0.0008 15.2 1.8 15 61-75 2-16 (33)
170 PF04239 DUF421: Protein of un 37.1 15 0.00032 21.1 0.5 35 63-103 26-60 (99)
171 PF03979 Sigma70_r1_1: Sigma-7 36.8 71 0.0015 17.4 3.2 46 8-59 6-51 (82)
172 COG4103 Uncharacterized protei 36.6 53 0.0011 20.4 2.8 12 63-74 82-93 (148)
173 KOG1265|consensus 36.5 2.5E+02 0.0054 23.3 6.9 66 9-75 221-299 (1189)
174 PF08414 NADPH_Ox: Respiratory 36.5 89 0.0019 18.2 5.4 13 23-35 42-54 (100)
175 cd00171 Sec7 Sec7 domain; Doma 35.1 1.2E+02 0.0026 19.4 4.5 7 26-32 150-156 (185)
176 PF08672 APC2: Anaphase promot 35.0 70 0.0015 16.6 3.9 33 43-76 11-45 (60)
177 PF04876 Tenui_NCP: Tenuivirus 33.6 1.3E+02 0.0027 19.0 4.6 45 21-75 95-139 (175)
178 PF05872 DUF853: Bacterial pro 32.9 1.9E+02 0.004 22.0 5.5 52 25-76 105-157 (502)
179 PF12486 DUF3702: ImpA domain 29.6 77 0.0017 19.8 2.8 29 48-76 70-98 (148)
180 PF13075 DUF3939: Protein of u 29.3 62 0.0013 20.0 2.3 13 64-76 10-22 (140)
181 KOG2301|consensus 29.3 53 0.0011 28.5 2.6 34 44-77 1414-1447(1592)
182 PF14237 DUF4339: Domain of un 28.8 48 0.0011 15.7 1.5 19 57-75 7-25 (45)
183 PF11363 DUF3164: Protein of u 28.4 1.7E+02 0.0038 19.1 5.0 23 52-74 124-146 (195)
184 PF14164 YqzH: YqzH-like prote 26.4 1.1E+02 0.0024 16.2 3.7 30 48-77 9-39 (64)
185 PF10891 DUF2719: Protein of u 26.1 55 0.0012 18.1 1.5 12 97-108 32-43 (81)
186 PF06226 DUF1007: Protein of u 25.6 88 0.0019 20.5 2.7 24 53-76 56-79 (212)
187 smart00222 Sec7 Sec7 domain. D 25.5 1.9E+02 0.0041 18.5 4.5 9 64-72 152-160 (187)
188 PF09441 Abp2: ARS binding pro 25.5 85 0.0018 20.0 2.4 36 42-77 31-66 (175)
189 KOG4629|consensus 25.3 2.2E+02 0.0047 22.8 5.0 56 11-75 406-461 (714)
190 smart00165 UBA Ubiquitin assoc 24.7 19 0.00042 16.1 -0.4 17 3-19 10-26 (37)
191 PF06744 DUF1215: Protein of u 24.3 96 0.0021 18.4 2.5 34 56-89 57-92 (125)
192 PF05099 TerB: Tellurite resis 23.9 1.2E+02 0.0026 17.9 3.0 12 23-34 37-48 (140)
193 cd08814 DED_Caspase_10_repeat2 23.8 1.4E+02 0.0031 16.4 3.3 14 3-16 12-25 (79)
194 cd00325 chitinase_glyco_hydro_ 23.8 2.4E+02 0.0051 19.0 5.0 30 6-35 1-33 (230)
195 PF09873 DUF2100: Uncharacteri 22.8 2.2E+02 0.0049 18.9 4.1 13 23-35 39-51 (215)
196 cd00194 UBA Ubiquitin Associat 22.5 23 0.00049 16.0 -0.4 17 3-19 10-26 (38)
197 PF02671 PAH: Paired amphipath 21.9 1.1E+02 0.0024 14.5 3.5 11 62-72 17-27 (47)
198 KOG0998|consensus 21.8 81 0.0017 25.5 2.3 64 9-76 11-74 (847)
199 TIGR01639 P_fal_TIGR01639 Plas 20.5 1.4E+02 0.0031 15.3 2.5 28 4-35 8-35 (61)
200 PF04157 EAP30: EAP30/Vps36 fa 20.0 2.7E+02 0.0059 18.3 6.8 13 61-73 130-142 (223)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.84 E-value=5.2e-20 Score=113.79 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=91.3
Q ss_pred CCCCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----H
Q psy6934 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----A 78 (113)
Q Consensus 3 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~ 78 (113)
+.++|..++.+++..+|. +.+.|+|.+|+.+| +.......+++++++||+.||.+++|+|+..+|+.++..++ .
T Consensus 50 g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~m-s~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~d 127 (160)
T COG5126 50 GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVM-SVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD 127 (160)
T ss_pred CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHH-HHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCH
Confidence 567899999999999998 88999999999999 88888889999999999999999999999999999999987 6
Q ss_pred HHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 79 DYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
+++..++..+. .+++|.|+|++|++.+..
T Consensus 128 eev~~ll~~~d-----~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 128 EEVEKLLKEYD-----EDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHHhcC-----CCCCceEeHHHHHHHHhc
Confidence 77778877764 234599999999987653
No 2
>KOG0027|consensus
Probab=99.84 E-value=6e-20 Score=113.84 Aligned_cols=104 Identities=22% Similarity=0.401 Sum_probs=87.7
Q ss_pred CCCCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcC----cHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-
Q psy6934 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQ----SSEEIENAFHAIAASDRPYVTKEELYANLTKEM- 77 (113)
Q Consensus 3 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~----~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~- 77 (113)
+..+|+.++..+++.+|.+++|.|+|.+|+.++ ........ ..+++++||+.||++++|+|+..||+.+|..++
T Consensus 38 g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~-~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 38 GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLM-EKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHH-HhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 467889999999999999999999999999998 54433222 456999999999999999999999999999987
Q ss_pred ---HHHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 78 ---ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 78 ---~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.+++..++.... .++||.|+|++|+.+|..
T Consensus 117 ~~~~~e~~~mi~~~d-----~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 117 KLTDEECKEMIREVD-----VDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cCCHHHHHHHHHhcC-----CCCCCeEeHHHHHHHHhc
Confidence 667777776643 346699999999998865
No 3
>KOG0030|consensus
Probab=99.68 E-value=6.2e-16 Score=92.58 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=88.5
Q ss_pred CCCCChHHHHHHHHhhCCC--CCcceeHHHHHHHHhh-hccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh--
Q psy6934 3 EEGQPDPEFEAILDLVDPN--RDGHVSLQEYMAFMIS-KETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM-- 77 (113)
Q Consensus 3 ~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~-~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-- 77 (113)
+.++|..++.+....++++ +--+|+|++|+.++.+ ...+...+.+++.+.++.||++++|.|...||+++|.++|
T Consensus 41 G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGek 120 (152)
T KOG0030|consen 41 GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEK 120 (152)
T ss_pred cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhh
Confidence 5678889998888887766 3467999999998832 2446678889999999999999999999999999999988
Q ss_pred --HHHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 78 --ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 78 --~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.+++...+....+.+ |.|+|+.|++.++.
T Consensus 121 l~eeEVe~Llag~eD~n------G~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 121 LTEEEVEELLAGQEDSN------GCINYEAFVKHIMS 151 (152)
T ss_pred ccHHHHHHHHccccccC------CcCcHHHHHHHHhc
Confidence 778888888877777 99999999999875
No 4
>KOG0028|consensus
Probab=99.66 E-value=1.1e-15 Score=93.48 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=86.2
Q ss_pred CChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHH
Q psy6934 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----ADYC 81 (113)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~ 81 (113)
+..+++..++..+|++++|.|+|++|+..+ +......++.++++.+|+.+|.+++|.|+..+|+.+...++ .+++
T Consensus 66 ~~k~ei~kll~d~dk~~~g~i~fe~f~~~m-t~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El 144 (172)
T KOG0028|consen 66 PKKEEILKLLADVDKEGSGKITFEDFRRVM-TVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEEL 144 (172)
T ss_pred cchHHHHHHHHhhhhccCceechHHHHHHH-HHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHH
Confidence 346899999999999999999999999999 65555666999999999999999999999999999999988 5677
Q ss_pred HHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 82 VERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 82 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.++|.++. .+++|.|+-++|.+.|.
T Consensus 145 ~eMIeEAd-----~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 145 MEMIEEAD-----RDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHHHhc-----ccccccccHHHHHHHHh
Confidence 77777754 33569999999988764
No 5
>PTZ00183 centrin; Provisional
Probab=99.65 E-value=4.3e-15 Score=92.04 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=83.2
Q ss_pred CCCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HH
Q psy6934 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----AD 79 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~ 79 (113)
...+...+..++..+|.+++|.|+|++|+.++ ........+.+.++.+|+.+|.+++|+|+..||..++...+ ..
T Consensus 48 ~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~-~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~ 126 (158)
T PTZ00183 48 FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIM-TKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDE 126 (158)
T ss_pred CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH-HHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHH
Confidence 34677889999999999999999999999987 44334456678899999999999999999999999998765 55
Q ss_pred HHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 80 YCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.+..++..+. .+++|.|+|++|+..+.+
T Consensus 127 ~~~~~~~~~d-----~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 127 ELQEMIDEAD-----RNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHhC-----CCCCCcCcHHHHHHHHhc
Confidence 6666666643 235599999999887754
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.64 E-value=4.5e-15 Score=90.93 Aligned_cols=103 Identities=19% Similarity=0.438 Sum_probs=82.3
Q ss_pred CCCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HH
Q psy6934 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----AD 79 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~ 79 (113)
..++.+++..+++.+|.+++|.|+|++|+.++ ..........+.++.+|+.+|.+++|+|+.+++..++...+ .+
T Consensus 42 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l-~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~ 120 (149)
T PTZ00184 42 QNPTEAELQDMINEVDADGNGTIDFPEFLTLM-ARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDE 120 (149)
T ss_pred CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHH-HHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHH
Confidence 34667889999999999999999999999987 54444455667899999999999999999999999997764 45
Q ss_pred HHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 80 YCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.+..++..+ +.+++|.|+|++|+..+..
T Consensus 121 ~~~~~~~~~-----d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 121 EVDEMIREA-----DVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHhc-----CCCCCCcCcHHHHHHHHhc
Confidence 555565543 3345699999999887753
No 7
>KOG0034|consensus
Probab=99.60 E-value=1.1e-14 Score=92.62 Aligned_cols=100 Identities=18% Similarity=0.327 Sum_probs=76.3
Q ss_pred HHHHHHhhCCCCCcc-eeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----H--HHH-H
Q psy6934 11 FEAILDLVDPNRDGH-VSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----A--DYC-V 82 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~-i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~--~~~-~ 82 (113)
..+++..++.+++|. |+|++|+..+ +.........++++-||+.||.+++|+|+.+|+.+++...- . ++. .
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~l-s~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~ 146 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLL-SVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLE 146 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHH-hhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHH
Confidence 467788888888888 9999999999 77767677778999999999999999999999999987653 1 222 2
Q ss_pred HhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 83 ERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 83 ~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
+++....... |.++||.|+|+||++.+..
T Consensus 147 ~i~d~t~~e~-D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 147 DIVDKTFEEA-DTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHh-CCCCCCcCcHHHHHHHHHc
Confidence 2222211222 5567799999999988764
No 8
>KOG0031|consensus
Probab=99.58 E-value=5.7e-14 Score=85.55 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=83.1
Q ss_pred CCCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HH
Q psy6934 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----AD 79 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~ 79 (113)
...+++++..|+.. ..|.|+|--|+.++ ...+...++++.+..||+.||.+++|+|..+.|+.+|...+ .+
T Consensus 63 k~~~d~elDaM~~E----a~gPINft~FLTmf-GekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~e 137 (171)
T KOG0031|consen 63 KIASDEELDAMMKE----APGPINFTVFLTMF-GEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDE 137 (171)
T ss_pred CCCCHHHHHHHHHh----CCCCeeHHHHHHHH-HHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHH
Confidence 44677888888865 35789999999998 77778889999999999999999999999999999999887 77
Q ss_pred HHHHhccccc-CCCCCCCCCCceehHHHHHHHh
Q psy6934 80 YCVERMKPYV-DPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 80 ~~~~~~~~~~-~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
++.+++..+. +.. |.|+|..|++.|-
T Consensus 138 EV~~m~r~~p~d~~------G~~dy~~~~~~it 164 (171)
T KOG0031|consen 138 EVDEMYREAPIDKK------GNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhCCcccC------CceeHHHHHHHHH
Confidence 8888887765 556 9999999988774
No 9
>KOG0037|consensus
Probab=99.56 E-value=5.1e-14 Score=90.19 Aligned_cols=94 Identities=15% Similarity=0.242 Sum_probs=81.2
Q ss_pred CCCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HH
Q psy6934 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----AD 79 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~ 79 (113)
.+++.+-++.|+..+|.+.+|.|+|.||..++... ..|+.+|+.||+|++|+|+..||+.+|..+| .+
T Consensus 89 ~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq 160 (221)
T KOG0037|consen 89 SPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--------NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQ 160 (221)
T ss_pred CCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH--------HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHH
Confidence 56888999999999999999999999999987222 3899999999999999999999999999988 66
Q ss_pred HHHHhcccccCC-CCCCCCCCceehHHHHHHHh
Q psy6934 80 YCVERMKPYVDP-KTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 80 ~~~~~~~~~~~~-~~d~~~~g~I~~~eF~~~l~ 111 (113)
...-+++++++. . |.|.|++|+.++.
T Consensus 161 ~~~~lv~kyd~~~~------g~i~FD~FI~ccv 187 (221)
T KOG0037|consen 161 FYNLLVRKYDRFGG------GRIDFDDFIQCCV 187 (221)
T ss_pred HHHHHHHHhccccC------CceeHHHHHHHHH
Confidence 666677777643 5 9999999998764
No 10
>KOG0044|consensus
Probab=99.49 E-value=1.8e-13 Score=87.31 Aligned_cols=100 Identities=20% Similarity=0.290 Sum_probs=77.0
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-------
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM------- 77 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~------- 77 (113)
|-+..-++.+|+.+|.+++|.|+|.||+..+ +.. .....++.++++|++||.+++|+|+..|+..++...-
T Consensus 60 gd~~~y~~~vF~~fD~~~dg~i~F~Efi~al-s~~-~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~ 137 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDKNKDGTIDFLEFICAL-SLT-SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKA 137 (193)
T ss_pred CCHHHHHHHHHHHhcccCCCCcCHHHHHHHH-HHH-cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccccc
Confidence 3445667889999999999999999999887 543 4567778999999999999999999999988775431
Q ss_pred --------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 78 --------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 78 --------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.+.+..++.. +|.|+||.|++++|+....
T Consensus 138 ~~~~~~~~~~~v~~if~k-----~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 138 LPEDEETPEERVDKIFSK-----MDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred CCcccccHHHHHHHHHHH-----cCCCCCCcccHHHHHHHhh
Confidence 2233334433 3566889999999987643
No 11
>KOG0038|consensus
Probab=99.35 E-value=1.8e-12 Score=78.64 Aligned_cols=98 Identities=14% Similarity=0.274 Sum_probs=73.8
Q ss_pred HHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-----HHHHHHhccc
Q psy6934 13 AILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM-----ADYCVERMKP 87 (113)
Q Consensus 13 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-----~~~~~~~~~~ 87 (113)
++.+.+..+|.|.++|++|+..+ +.........-++.-||+.||-+++++|...+|...+.++. .+++..++.+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmf-SV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMF-SVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHH-HHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 55667778999999999999998 77666566666888899999999999999999999987763 2222222222
Q ss_pred ccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 88 YVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 88 ~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
..+.. |.++||+|++.+|-+++..
T Consensus 154 vieEA-D~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 154 VIEEA-DLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHh-cCCCCCcccHHHHHHHHHh
Confidence 22222 5567799999999877653
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.33 E-value=1.3e-12 Score=70.09 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhhhccC---CcCcHHHHHHHHHhhCCCCCCCcCHHHHHHH
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFMISKETE---NVQSSEEIENAFHAIAASDRPYVTKEELYAN 72 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~ 72 (113)
++.+|+.+|.+++|.|+.+||..++ ..... .....+.+..+|+.+|.+++|.|+.+||..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRAL-KHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHH-HHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHH-HHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 4555666666666666666666555 22211 1112233444456666666666666555543
No 13
>KOG0027|consensus
Probab=99.29 E-value=5.1e-11 Score=73.82 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=79.8
Q ss_pred hHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhH---------
Q psy6934 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMA--------- 78 (113)
Q Consensus 8 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~--------- 78 (113)
..++..+|+.+|.+++|.|+-.++..++ .. +....+..++..+++.+|.+++|.|+.++|..++.+...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~l-r~-lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVL-RS-LGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHH-HH-cCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 4678999999999999999999999998 32 345578899999999999999999999999999987651
Q ss_pred HHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 79 DYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
+.+.+.+..+ |.+++|.|+..++.+.|.
T Consensus 85 ~el~eaF~~f-----D~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 85 EELKEAFRVF-----DKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHHHH-----ccCCCCcCcHHHHHHHHH
Confidence 2555555554 444679999999977764
No 14
>KOG0040|consensus
Probab=99.27 E-value=5.5e-11 Score=92.50 Aligned_cols=112 Identities=67% Similarity=1.080 Sum_probs=99.7
Q ss_pred CCCCCCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHH
Q psy6934 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADY 80 (113)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~ 80 (113)
||++|.++.++++++...||+.+|.|+.++|+.+|+.+.+.+..+.+++..||+.+|. +..+|+..++...|.+...+.
T Consensus 2288 mvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~ltreqaef 2366 (2399)
T KOG0040|consen 2288 MVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQNLTREQAEF 2366 (2399)
T ss_pred ccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhcCCHHHHHH
Confidence 7889999999999999999999999999999999977778888888899999999999 889999999999999999999
Q ss_pred HHHhcccccCCCCCCCCCCceehHHHHHHHhcC
Q psy6934 81 CVERMKPYVDPKTERGIPGALDYIEFTRTLFQN 113 (113)
Q Consensus 81 ~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~~ 113 (113)
|-..|+.+.++..+..-...|+|.+|++.++.+
T Consensus 2367 c~s~m~~~~e~~~~~s~q~~l~y~dfv~sl~~~ 2399 (2399)
T KOG0040|consen 2367 CMSKMKPYAETSSGRSDQVALDYKDFVNSLFVN 2399 (2399)
T ss_pred HHHHhhhhcccccCCCccccccHHHHHHHHhcC
Confidence 999988887543233445789999999999864
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.26 E-value=2.5e-11 Score=65.09 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=45.9
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKEM----ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.++++|+.+|.+++|+|+.+||..++...+ ...+...+..+.... |.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREF-DTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHH-TTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHh-CCCCcCCCcHHHHhccC
Confidence 478999999999999999999999998876 333333322222111 44577999999998764
No 16
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.24 E-value=2.2e-10 Score=71.17 Aligned_cols=98 Identities=19% Similarity=0.282 Sum_probs=81.1
Q ss_pred CCChHH---HHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----
Q psy6934 5 GQPDPE---FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM---- 77 (113)
Q Consensus 5 ~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~---- 77 (113)
.+|.++ +++.|+.+|++++|.|+..++..++ . .+....+...+..+|..+|. +++.|+..+|..++....
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~il-r-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKIL-R-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHH-H-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 345544 5677888999999999999999998 3 55678889999999999999 999999999999987653
Q ss_pred -HHHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 78 -ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 78 -~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.+.+...++.+ |.+++|.|+..+++++|
T Consensus 90 ~~Eel~~aF~~f-----D~d~dG~Is~~eL~~vl 118 (160)
T COG5126 90 KEEELREAFKLF-----DKDHDGYISIGELRRVL 118 (160)
T ss_pred cHHHHHHHHHHh-----CCCCCceecHHHHHHHH
Confidence 67777777775 34467999999997765
No 17
>KOG0036|consensus
Probab=99.24 E-value=6.8e-11 Score=82.14 Aligned_cols=94 Identities=16% Similarity=0.285 Sum_probs=76.7
Q ss_pred CChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHH
Q psy6934 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----ADYC 81 (113)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~ 81 (113)
+..+.++.+++.+|.|.+|.++|+||..++ ...+.++..+|+.+|.+++|.|...|+.+.|...+ .+.+
T Consensus 48 ~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~-------~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~ 120 (463)
T KOG0036|consen 48 PNYEAAKMLFSAMDANRDGRVDYSEFKRYL-------DNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKA 120 (463)
T ss_pred CchHHHHHHHHhcccCcCCcccHHHHHHHH-------HHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHH
Confidence 445677889999999999999999999998 34466899999999999999999999999999988 3344
Q ss_pred HHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 82 VERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 82 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
..++... |.++.+.|+++||...++
T Consensus 121 ~k~~e~~-----d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 121 AKFFEHM-----DKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHHHHHh-----ccCCCeeeccHHHHhhhh
Confidence 4444443 444669999999977664
No 18
>PTZ00183 centrin; Provisional
Probab=99.24 E-value=2.4e-10 Score=70.69 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=73.8
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-----HHHHHH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM-----ADYCVE 83 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-----~~~~~~ 83 (113)
.++..+|..+|++++|.|++++|..++ ... ....+...+..+|+.+|.+++|.|+..+|..++.... .+.+..
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l-~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAM-RSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHH-HHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 456777888999999999999999887 432 2235667899999999999999999999998876531 344555
Q ss_pred hcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 84 RMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 84 ~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.+..+ |.+++|.|+.++|...+.
T Consensus 95 ~F~~~-----D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 95 AFRLF-----DDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHHh-----CCCCCCcCcHHHHHHHHH
Confidence 55443 344669999999977664
No 19
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.21 E-value=4.1e-11 Score=68.00 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=36.2
Q ss_pred HHHHHHHhhCC-CCCCCcCHHHHHHHhhH-hh----H-HHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 48 EIENAFHAIAA-SDRPYVTKEELYANLTK-EM----A-DYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 48 ~~~~~f~~~D~-~~~g~i~~~el~~~l~~-~~----~-~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.++.+|+.||+ +++|+|+..||+.++.+ ++ . +.+.+++... |.++||.|+|+||+.+|
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~-----D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNL-----DVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHh-----CCCCCCCCcHHHHHHHH
Confidence 56667777777 77777777777777766 44 2 4455555442 33455777777776554
No 20
>PTZ00184 calmodulin; Provisional
Probab=99.19 E-value=5.9e-10 Score=68.12 Aligned_cols=95 Identities=18% Similarity=0.327 Sum_probs=72.6
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-----HHHHHH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM-----ADYCVE 83 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-----~~~~~~ 83 (113)
+.+...|..+|.+++|.|++++|..++ ... ......+.+..+|+.+|.+++|.|+.++|..++.... .+.+..
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l-~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVM-RSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHH-HHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 445677888999999999999999887 432 3334567899999999999999999999999886532 334444
Q ss_pred hcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 84 RMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 84 ~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.+..+ |.+++|.|+.++|.+.+
T Consensus 89 ~F~~~-----D~~~~g~i~~~e~~~~l 110 (149)
T PTZ00184 89 AFKVF-----DRDGNGFISAAELRHVM 110 (149)
T ss_pred HHHhh-----CCCCCCeEeHHHHHHHH
Confidence 55444 34466999999997665
No 21
>KOG0044|consensus
Probab=99.18 E-value=6.6e-10 Score=71.12 Aligned_cols=102 Identities=12% Similarity=0.106 Sum_probs=81.8
Q ss_pred CCCChHHHHHHHHhhCCC-CCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----H
Q psy6934 4 EGQPDPEFEAILDLVDPN-RDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----A 78 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~ 78 (113)
..++..+++.+++.+-.+ .+|.++.++|..++ ....+...+..-...+|+.||.+++|+|+..||...|+... .
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~-~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~e 99 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIY-ASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLE 99 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHH-HHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHH
Confidence 468899999999998665 48999999999998 55555677777888999999999999999999888876553 5
Q ss_pred HHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 79 DYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 79 ~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
+.+...+..| |.+++|.|+++|+++.+.
T Consensus 100 ekl~w~F~ly-----D~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 100 EKLKWAFRLY-----DLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred HHhhhhheee-----cCCCCceEcHHHHHHHHH
Confidence 5555555555 444669999999987653
No 22
>KOG4223|consensus
Probab=99.09 E-value=5.3e-10 Score=75.59 Aligned_cols=103 Identities=20% Similarity=0.255 Sum_probs=71.7
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhcc-----CCc---CcHH----HHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKET-----ENV---QSSE----EIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-----~~~---~~~~----~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.+..+-|..+|.+.+|.|+|++|+..+..... ... .+.. .-+.-|++-|.+++|.++++||..+|++.
T Consensus 113 ~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPE 192 (325)
T KOG4223|consen 113 EEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPE 192 (325)
T ss_pred HHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChh
Confidence 44566777889999999999999998732110 111 1111 34567999999999999999999999987
Q ss_pred hHHHHHHhccc-ccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 77 MADYCVERMKP-YVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 77 ~~~~~~~~~~~-~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.......++.. -... +|+|+||.|+++||+.-|+.
T Consensus 193 e~p~M~~iVi~Etl~d-~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 193 EHPHMKDIVIAETLED-IDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred hcchHHHHHHHHHHhh-cccCCCCceeHHHHHhHHhh
Confidence 62222222211 1122 36778999999999988875
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.07 E-value=5.2e-10 Score=63.41 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHhhC-CCCCC-CcCHHHHHHHhhH-----hh----HHHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 48 EIENAFHAIA-ASDRP-YVTKEELYANLTK-----EM----ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 48 ~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-----~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.++++|+.|| ++++| .|+..||+.+|.+ .+ .+.+.+++... |.+++|.|+|++|+..+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~-----D~n~dG~v~f~eF~~li 77 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL-----DSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHh-----CCCCCCcCcHHHHHHHH
Confidence 4556666665 56666 3666666666655 33 23344444442 22244666666665544
No 24
>PLN02964 phosphatidylserine decarboxylase
Probab=99.06 E-value=1.2e-09 Score=80.64 Aligned_cols=69 Identities=28% Similarity=0.361 Sum_probs=58.6
Q ss_pred CCChHH---HHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 5 GQPDPE---FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 5 ~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
.++..+ +..+|+.+|.+++|.|+|+||+.++ ... ....++++++++|+.||.+++|+|+.+||+.++..
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL-~~l-g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLI-KAF-GNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHH-HHh-ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 356665 7899999999999999999999988 443 34577889999999999999999999999998876
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.99 E-value=4.1e-09 Score=59.78 Aligned_cols=68 Identities=7% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCC-CCCcceeHHHHHHHHhhhccCCcCcH-HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 9 PEFEAILDLVDP-NRDGHVSLQEYMAFMISKETENVQSS-EEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 9 ~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
..+..+|..+|+ +++|.|+..|+..++ ...++...+. +++.++++.+|.+++|.|+.+||..++..+.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll-~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELL-TQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHH-HHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 457789999999 999999999999999 4423333444 7899999999999999999999999988764
No 26
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.98 E-value=1.7e-09 Score=61.87 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHHHHHhhC-CCCCc-ceeHHHHHHHHhhhcc----CCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 10 EFEAILDLVD-PNRDG-HVSLQEYMAFMISKET----ENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 10 ~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
.+.++|..|| ++++| .|+.+|+..++ .... ....+..++..+++.+|.+++|.|+.+||..++..+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll-~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELL-QRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHH-HHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 3445566666 55666 37777776666 3211 2223455666666666776667777777666666653
No 27
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.94 E-value=3.5e-09 Score=56.57 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=41.9
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 12 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 12 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
+.+|..+|++++|.|+.+|+..++ ... ..+.+.+..+|+.+|.+++|.|+.+++..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l-~~~---g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFL-GKS---GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHH-HHc---CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 456777777777778888877776 322 225667777777777777777877777766544
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.92 E-value=4.1e-09 Score=60.60 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=52.9
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.++..+|..+|.+++|.|+.+++..++ ... ..+.+++..+|+.+|.+++|+|+.++|..++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l-~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPIL-LKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHH-HHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 456777888999999999999999988 332 3567789999999999999999999998887654
No 29
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.92 E-value=1.6e-08 Score=57.82 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=46.8
Q ss_pred HHHHHHHhhC-CCCCC-CcCHHHHHHHhhHh---------hHHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 48 EIENAFHAIA-ASDRP-YVTKEELYANLTKE---------MADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 48 ~~~~~f~~~D-~~~~g-~i~~~el~~~l~~~---------~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.++++|+.|| ++++| +|+..||+.++... ....+.+++... |.+++|.|+|+||+..|.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~el-----D~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDL-----DSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHh-----CCCCCCCCCHHHHHHHHH
Confidence 6889999999 78998 59999999999763 134677777664 444679999999988764
No 30
>PLN02964 phosphatidylserine decarboxylase
Probab=98.90 E-value=1.4e-08 Score=75.08 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=68.0
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHH---HHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEE---IENAFHAIAASDRPYVTKEELYANLTKEM----ADYC 81 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~---~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~ 81 (113)
+++.+.|..+|++++|.+ +...+..+ .....++++ +..+|+.+|.+++|.|+.+||..++...+ .+.+
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrsl----G~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL 217 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSC----SIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKK 217 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHH
Confidence 556777889999999997 33333322 111333443 89999999999999999999999998765 4556
Q ss_pred HHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 82 VERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 82 ~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.+.+..++ .+++|.|+++||.+.|.
T Consensus 218 ~eaFk~fD-----kDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 218 EELFKAAD-----LNGDGVVTIDELAALLA 242 (644)
T ss_pred HHHHHHhC-----CCCCCcCCHHHHHHHHH
Confidence 66666653 34669999999987664
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.90 E-value=2.5e-08 Score=56.48 Aligned_cols=68 Identities=9% Similarity=0.142 Sum_probs=57.3
Q ss_pred HHHHHHHHhhC-CCCCc-ceeHHHHHHHHhhh----ccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 9 PEFEAILDLVD-PNRDG-HVSLQEYMAFMISK----ETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 9 ~~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~----~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
..+.++|..+| ++++| .|+..++..++ .. ......+++++..+++.+|++++|.|+.++|..++....
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll-~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELI-NNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHH-HHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46788999998 79999 59999999998 43 134456778899999999999999999999998887654
No 32
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.89 E-value=5.2e-09 Score=59.70 Aligned_cols=68 Identities=7% Similarity=0.132 Sum_probs=39.6
Q ss_pred HHHHHHHHhhC-CCCCc-ceeHHHHHHHHhhh-c---cCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 9 PEFEAILDLVD-PNRDG-HVSLQEYMAFMISK-E---TENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 9 ~~~~~~~~~~d-~~~~g-~i~~~ef~~~~~~~-~---~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
+.+.+.|..+| .+++| .|+..++..++ .. . .....+.+.+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l-~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLL-QTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHH-HHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 45566666664 66666 36666666666 22 1 11123455666666666666666666666666665543
No 33
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.88 E-value=7.1e-09 Score=59.38 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHHHhhCC-CC-CcceeHHHHHHHHhhhc----cCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 9 PEFEAILDLVDP-NR-DGHVSLQEYMAFMISKE----TENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 9 ~~~~~~~~~~d~-~~-~g~i~~~ef~~~~~~~~----~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
.++..+|..+|. ++ +|.|+.+|+..++ ... .....+.+++..+++.+|.+++|.|+.++|..++...+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l-~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLM-EKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHH-HHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456677777775 76 5788888888777 321 12234566777777778888888888888877777655
No 34
>KOG4223|consensus
Probab=98.88 E-value=1.1e-08 Score=69.27 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=67.1
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHH---HHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHHHH
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSE---EIENAFHAIAASDRPYVTKEELYANLTKEM----ADYCVE 83 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~---~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~ 83 (113)
|..-+...|+|++|.|+++||+.=|.+.......++- +-...+..+|+|++|+++.+|+++++.+.+ ..++..
T Consensus 202 i~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~h 281 (325)
T KOG4223|consen 202 IAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARH 281 (325)
T ss_pred HHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHH
Confidence 4556677899999999999999877444322222221 223466788999999999999999997765 455555
Q ss_pred hcccccCCCCCCCCCCceehHHHHH
Q psy6934 84 RMKPYVDPKTERGIPGALDYIEFTR 108 (113)
Q Consensus 84 ~~~~~~~~~~d~~~~g~I~~~eF~~ 108 (113)
++... |.|+||++|++|-+.
T Consensus 282 L~~ea-----D~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 282 LLHEA-----DEDKDGKLSKEEILE 301 (325)
T ss_pred Hhhhh-----ccCccccccHHHHhh
Confidence 65553 445779999999764
No 35
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.86 E-value=1.8e-08 Score=52.20 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=48.1
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHh
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANL 73 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 73 (113)
+..+|..+|.+++|.|++++|..++ .. .....+.+.+..+|+.+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l-~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAAL-KS-LGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHH-HH-hCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5677888888888999999988887 32 3355667788888888888888889888887654
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.86 E-value=4.3e-08 Score=56.30 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=48.9
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh--HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKEM--ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
..++.+|+.+|.+++|.|+.++++.++...+ .+.+..++..+. .+++|.|+|++|+..+.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d-----~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLAD-----IDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhc-----CCCCCCcCHHHHHHHHH
Confidence 4788999999999999999999999998776 556666666543 33569999999987664
No 37
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.84 E-value=2.7e-08 Score=56.18 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhCC--CCCcceeHHHHHHHHhhhccC----CcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 8 DPEFEAILDLVDP--NRDGHVSLQEYMAFMISKETE----NVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 8 ~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~~~~----~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.+.+..+|..+|. +++|.|+.+++..++ ..... ...+..++..+++.+|.+++|.|+.++|..++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l-~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELL-ETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHH-HHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3567778899999 799999999999887 32111 12357789999999999999999999998887765
No 38
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.84 E-value=7.1e-08 Score=55.23 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=46.1
Q ss_pred HHHHHHHhhCC-CC-CCCcCHHHHHHHhhH-h----h----HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 48 EIENAFHAIAA-SD-RPYVTKEELYANLTK-E----M----ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 48 ~~~~~f~~~D~-~~-~g~i~~~el~~~l~~-~----~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.++.+|+.||. ++ +|+|+..||+.++.. . + .+.+..++..+. .+++|.|+|++|+..+.
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D-----~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLD-----QNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhC-----CCCCCcCcHHHHHHHHH
Confidence 58899999997 87 699999999999875 2 2 456666766643 34669999999987764
No 39
>KOG0028|consensus
Probab=98.83 E-value=9.5e-08 Score=58.97 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=74.1
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh-h----HHHHHH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE-M----ADYCVE 83 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~----~~~~~~ 83 (113)
.+++..|..++++++|.|++.|+...+ ..+ .-....+++..+..-+|++++|.|+.++|+.++... + .+++..
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAm-ral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~ 110 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAM-RAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKK 110 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHH-HHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHH
Confidence 678899999999999999999996666 322 234556788899999999999999999999987643 2 556666
Q ss_pred hcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 84 RMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 84 ~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.+..++ .+++|.|++.+|++..
T Consensus 111 afrl~D-----~D~~Gkis~~~lkrva 132 (172)
T KOG0028|consen 111 AFRLFD-----DDKTGKISQRNLKRVA 132 (172)
T ss_pred HHHccc-----ccCCCCcCHHHHHHHH
Confidence 666543 3456999999997654
No 40
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.83 E-value=1.7e-08 Score=57.02 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=47.2
Q ss_pred HHHHHHHHhhCC--CCCCCcCHHHHHHHhhH-hh--------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 47 EEIENAFHAIAA--SDRPYVTKEELYANLTK-EM--------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 47 ~~~~~~f~~~D~--~~~g~i~~~el~~~l~~-~~--------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
+.++.+|..||+ +++|.|+..+|..++.. .+ .+.+..++..+. .+++|.|+|++|+..+.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d-----~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLD-----VNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhc-----cCCCCcCcHHHHHHHHH
Confidence 478899999999 89999999999999875 22 455666666543 33569999999988764
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.82 E-value=1.5e-08 Score=60.17 Aligned_cols=61 Identities=8% Similarity=0.086 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 46 SEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 46 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
...+.++|..+|.+++|.|+.+||..+........+..++..+ |.++||.||++||+..+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~-----D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESC-----DLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHH-----CCCCCCCCCHHHHHHHHh
Confidence 3578999999999999999999999876221133344444443 344779999999988773
No 42
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.82 E-value=6.7e-08 Score=55.08 Aligned_cols=60 Identities=28% Similarity=0.291 Sum_probs=47.5
Q ss_pred HHHHHHHHhhC-CCCCC-CcCHHHHHHHhhH-hh--------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 47 EEIENAFHAIA-ASDRP-YVTKEELYANLTK-EM--------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 47 ~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-~~--------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
+.++++|+.|| .+++| .|+..||+.+|.. .+ .+.+.+++..+. .+++|.|+|++|+..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D-----~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELD-----ENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHC-----CCCCCcCcHHHHHHHHH
Confidence 47899999997 99999 5999999999975 33 456777776643 34669999999987664
No 43
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.81 E-value=4.2e-08 Score=52.31 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=45.7
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHhhHhh--HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 50 ENAFHAIAASDRPYVTKEELYANLTKEM--ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 50 ~~~f~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
+.+|+.+|.+++|.|+.+|+..++...+ .+.+..++..+. .+++|.|+|++|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d-----~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLAD-----TDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhc-----CCCCCcCCHHHHHHHHH
Confidence 5789999999999999999999998776 455666665543 33569999999988764
No 44
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.80 E-value=1.5e-08 Score=57.37 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHHHHHhhCC-CC-CcceeHHHHHHHHhhh--ccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 11 FEAILDLVDP-NR-DGHVSLQEYMAFMISK--ETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 11 ~~~~~~~~d~-~~-~g~i~~~ef~~~~~~~--~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
+-.+|..|+. ++ +|.|+.+||..++ .. ......+.+++.++|+.+|.+++|.|+.+||..++..+.
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l-~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELI-QKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHH-HHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 3445555655 44 5667777777666 32 123344566666677667777777777777666665543
No 45
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.79 E-value=2.7e-08 Score=56.50 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=13.1
Q ss_pred HHHHHHHh-hCCCCCC-CcCHHHHHHHhhH
Q psy6934 48 EIENAFHA-IAASDRP-YVTKEELYANLTK 75 (113)
Q Consensus 48 ~~~~~f~~-~D~~~~g-~i~~~el~~~l~~ 75 (113)
.+..+|+. +|++++| +|+.+||+.++.+
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~ 39 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNT 39 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHH
Confidence 34444544 3444433 5555555555544
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.77 E-value=8.8e-09 Score=46.41 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=16.2
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 10 EFEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 10 ~~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
|++.+|+.+|+|++|.|+++||+.++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~ 26 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMM 26 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 45566666666666666666666655
No 47
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.77 E-value=7.4e-08 Score=57.20 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHh
Q psy6934 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANL 73 (113)
Q Consensus 8 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 73 (113)
...+..+|..+|.|++|.|+.+|+..+. ....+..+...|..+|.+++|.||.+|+..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~------l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR------LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH------ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3568899999999999999999999875 13446678889999999999999999999988
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.75 E-value=7.2e-08 Score=49.52 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=42.9
Q ss_pred CcceeHHHHHHHHhhhccCCc-CcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 23 DGHVSLQEYMAFMISKETENV-QSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 23 ~g~i~~~ef~~~~~~~~~~~~-~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
+|.|+.++|..++ ... ... .+.+++..+|..+|.+++|.|+.+||..++..
T Consensus 2 ~G~i~~~~~~~~l-~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRAL-SKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHH-HHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHH-HHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6889999999998 443 333 77888999999999999999999999988754
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.75 E-value=1.9e-08 Score=45.29 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
+++++|+.||+|++|+|+.+||..++.++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999998763
No 50
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.74 E-value=1.7e-07 Score=53.06 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=47.1
Q ss_pred HHHHHHHhhCC-CC-CCCcCHHHHHHHhhH---hh----HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 48 EIENAFHAIAA-SD-RPYVTKEELYANLTK---EM----ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 48 ~~~~~f~~~D~-~~-~g~i~~~el~~~l~~---~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.+..+|..||. ++ +|+|+.+||+.++.+ .+ .+.+.+++... |.+++|.|+|++|+..|.
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~-----D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDL-----DRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-----cCCCCCCCcHHHHHHHHH
Confidence 57789999998 67 899999999999964 33 66777777664 344669999999988764
No 51
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=98.74 E-value=9e-09 Score=55.42 Aligned_cols=68 Identities=50% Similarity=0.908 Sum_probs=52.8
Q ss_pred cCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 43 VQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 43 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
..+.+++.++|+.+ .++.++||.++|++.|.+.+.+.|.+.|..+.+.. .....|.++|..|++.|++
T Consensus 2 ~~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~aey~~~~Mp~~~~~~-~~~~~~~~DY~~f~~~l~g 69 (69)
T PF08726_consen 2 QDSAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQAEYCISRMPPYEGPD-GDAIPGAYDYESFTNSLFG 69 (69)
T ss_dssp SSTCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CCCHHHHHCCSEC--SSS-----TTEEECHHHHCCCT-
T ss_pred CCCHHHHHHHHHHH-HcCCCcccHHHHHHHcCcHHHHHHHHHCcccCCCC-cCCCCCCcCHHHHHHHHhC
Confidence 35668999999999 88899999999999999998999999999887433 3345588999999988875
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.66 E-value=4e-07 Score=51.67 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=54.7
Q ss_pred HHHHHHHHh-hCCCCCc-ceeHHHHHHHHhhhcc----CCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 9 PEFEAILDL-VDPNRDG-HVSLQEYMAFMISKET----ENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 9 ~~~~~~~~~-~d~~~~g-~i~~~ef~~~~~~~~~----~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
..+..+|.. ++.+++| .|+.+||..++ .... ........+..+++.+|.+++|.|+.+||..++..+.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll-~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFM-NTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHH-HHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 456677777 6777876 89999999998 5432 2344567899999999999999999999999887764
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.62 E-value=2.3e-07 Score=47.91 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 49 IENAFHAIAASDRPYVTKEELYANLTKEM----ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 49 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
++.+|..+|.+++|.|+..++..++...+ .+.+...+..+. .+++|.|++++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVD-----KDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhC-----CCCCCeEeHHHHHHHh
Confidence 56889999999999999999999998775 444555555543 2355999999997654
No 54
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.61 E-value=4.8e-08 Score=44.63 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=21.5
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhh
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLT 74 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~ 74 (113)
+++.+|+.+|.+++|+|+.+||..+|+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467888888888888888888888887
No 55
>KOG0037|consensus
Probab=98.60 E-value=1.4e-06 Score=56.36 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=80.1
Q ss_pred ChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhcc
Q psy6934 7 PDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMK 86 (113)
Q Consensus 7 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~ 86 (113)
+..++...|..+|.++.|.|+-+|....+ +......-..+..+.+..+||.+++|+|...||+.+...+ +....++.
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aL-sn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i--~~Wr~vF~ 131 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQAL-SNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI--NQWRNVFR 131 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHh-hcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH--HHHHHHHH
Confidence 45688899999999999999999999998 5444566777899999999999999999999999887764 44555666
Q ss_pred cccCCCCCCCCCCceehHHHHHHHh
Q psy6934 87 PYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 87 ~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.+ |.|+.|.|+..|+..+|.
T Consensus 132 ~~-----D~D~SG~I~~sEL~~Al~ 151 (221)
T KOG0037|consen 132 TY-----DRDRSGTIDSSELRQALT 151 (221)
T ss_pred hc-----ccCCCCcccHHHHHHHHH
Confidence 65 444669999999988875
No 56
>KOG0377|consensus
Probab=98.54 E-value=1.2e-06 Score=62.07 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=68.5
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcC--------------------------------------------
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQ-------------------------------------------- 44 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~-------------------------------------------- 44 (113)
.++..-|+.+|+..+|.|+...|..+|.. .+....
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~-i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMEN-ITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHH-HhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 57788899999999999999999888721 110000
Q ss_pred --cHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh--------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 45 --SSEEIENAFHAIAASDRPYVTKEELYANLTKEM--------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 45 --~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~--------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
....+..+|+.+|.+++|.|+.+||+.++.-++ .+.+.+.... +|.++||.|++.||+.+.+
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~-----mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARS-----MDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHh-----hccCCCCcccHHHHHHHHh
Confidence 012355689999999999999999998876543 3333333222 2455779999999988754
No 57
>KOG0031|consensus
Probab=98.49 E-value=6.1e-07 Score=55.17 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHHHHhccc
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKEM----ADYCVERMKP 87 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~~~~~ 87 (113)
+++++||...|.|++|.|..++|+.++.++| .++++.++.+
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E 76 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE 76 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 4666677777777777777777777666665 4455555544
No 58
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.48 E-value=1.3e-06 Score=49.50 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=46.7
Q ss_pred HHHHHHHhhCCC--CCcceeHHHHHHHHhhhccCCcCc----HHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 10 EFEAILDLVDPN--RDGHVSLQEYMAFMISKETENVQS----SEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 10 ~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~~~~~----~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.+-.+|..++.. .+|.|+.+|+..++ ........+ .+++..+|+.+|.+++|.|+.++|..++...
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll-~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLV-EKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHH-HHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 445666666643 46788888888887 432222233 7788888888888888888888888877655
No 59
>KOG0036|consensus
Probab=98.44 E-value=5.7e-06 Score=58.16 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=73.2
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhcccc
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPY 88 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~ 88 (113)
.++..+|+.+|.+++|.|+..+....+ .....+....+.....|+..|.+.+|.++..||++.+..... .+-.++..
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~-~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~-~l~~~F~~- 90 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGL-EKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKEL-ELYRIFQS- 90 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHH-HhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHH-HHHHHHhh-
Confidence 567889999999999999999998776 444333567778899999999999999999999999876533 33334433
Q ss_pred cCCCCCCCCCCceehHHHHHHH
Q psy6934 89 VDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 89 ~~~~~d~~~~g~I~~~eF~~~l 110 (113)
+|.++||.|+-+|.-+.+
T Consensus 91 ----iD~~hdG~i~~~Ei~~~l 108 (463)
T KOG0036|consen 91 ----IDLEHDGKIDPNEIWRYL 108 (463)
T ss_pred ----hccccCCccCHHHHHHHH
Confidence 245577999988765544
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.41 E-value=1.5e-06 Score=49.23 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=44.8
Q ss_pred HHHHHHHHhhCCC--CCCCcCHHHHHHHhhHhh---------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 47 EEIENAFHAIAAS--DRPYVTKEELYANLTKEM---------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 47 ~~~~~~f~~~D~~--~~g~i~~~el~~~l~~~~---------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
..+...|..|+.. ++|.|+.+||+.++.... .+.+..++..+ |.+++|.|+|++|+..+.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~-----D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDL-----DTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHc-----CCCCCCcCcHHHHHHHHH
Confidence 3677889999876 479999999999997432 34455665554 344679999999988764
No 61
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.36 E-value=1.3e-06 Score=44.80 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=30.5
Q ss_pred CCC-CChHHHHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 3 EEG-QPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 3 ~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
+.. ++++++..+|..+|.+++|.|+|+||+.++
T Consensus 18 g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 18 GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 345 899999999999999999999999999987
No 62
>KOG0034|consensus
Probab=98.35 E-value=3.8e-06 Score=53.83 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=53.8
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCc--HH----HHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQS--SE----EIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~--~~----~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
..++=.|+.||.+++|.|+.+++..++ ........+ .+ -+...|..+|.+++|+|+.+|+..++.+.
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv-~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQIL-RMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHH-HHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 366778999999999999999999998 554443333 33 34557999999999999999999988664
No 63
>PF14658 EF-hand_9: EF-hand domain
Probab=98.33 E-value=4.9e-06 Score=44.33 Aligned_cols=58 Identities=16% Similarity=0.361 Sum_probs=27.8
Q ss_pred HHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCC-CCcCHHHHHHHh
Q psy6934 15 LDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDR-PYVTKEELYANL 73 (113)
Q Consensus 15 ~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~-g~i~~~el~~~l 73 (113)
|..||.++.|.|....++.++ .........++++....+.+|+++. |.|+.+.|..++
T Consensus 4 F~~fD~~~tG~V~v~~l~~~L-ra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 4 FDAFDTQKTGRVPVSDLITYL-RAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred hhhcCCcCCceEeHHHHHHHH-HHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 445555555555555555554 2222223444455555555555554 555555554444
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.32 E-value=1.8e-06 Score=45.99 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=43.3
Q ss_pred HHHHhhCCCCCCCcCHHHHHHHhhHhh-----HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 51 NAFHAIAASDRPYVTKEELYANLTKEM-----ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 51 ~~f~~~D~~~~g~i~~~el~~~l~~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.+|.+||.+++|.|...+|..+|+..+ ...+..+....+ ++ +.+|.|+++.|+..|.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elD-P~---g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELD-PE---GRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhC-CC---CCCceEeHHHHHHHHH
Confidence 379999999999999999999998775 344444544433 33 2359999999988775
No 65
>KOG2643|consensus
Probab=98.32 E-value=6.4e-07 Score=63.14 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=42.2
Q ss_pred CCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHh
Q psy6934 19 DPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANL 73 (113)
Q Consensus 19 d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l 73 (113)
+.+.+|.|+|.||+-++ ..+ ..++..++-||++||.|++|-|+.+||..+.
T Consensus 209 ~lg~~GLIsfSdYiFLl-TlL---S~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~ 259 (489)
T KOG2643|consen 209 KLGESGLISFSDYIFLL-TLL---SIPERNFRIAFKMFDLDGNGEIDKEEFETVQ 259 (489)
T ss_pred EcCCCCeeeHHHHHHHH-HHH---ccCcccceeeeeeeecCCCCcccHHHHHHHH
Confidence 45678999999998777 433 4455678899999999999999999998876
No 66
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.32 E-value=6.7e-07 Score=38.80 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=10.3
Q ss_pred HHHHhhCCCCCCCcCHHHHHH
Q psy6934 51 NAFHAIAASDRPYVTKEELYA 71 (113)
Q Consensus 51 ~~f~~~D~~~~g~i~~~el~~ 71 (113)
.+|+.+|.|++|.|+.+||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 344555555555555555444
No 67
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.30 E-value=5.1e-06 Score=47.14 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHhh---------HHHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKEM---------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~---------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.+...|..|. .+.++++..||+.++.+.- +..+..++.. +|.++||.|+|.||+..+
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~-----LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKD-----LDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHH-----hCCCCCCcCcHHHHHHHH
Confidence 5667787776 4456888888888876543 3444455544 355577888888886654
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.29 E-value=3.3e-06 Score=59.72 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=41.0
Q ss_pred eeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhcccccCCCCCCCCCCceehHH
Q psy6934 26 VSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIE 105 (113)
Q Consensus 26 i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~e 105 (113)
...+.++.-..............++.+|+.+|.+++|.|+.+||.. +..++..+ |.++||.|+++|
T Consensus 313 ~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------~~~~F~~~-----D~d~DG~Is~eE 378 (391)
T PRK12309 313 ETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------SDAVFDAL-----DLNHDGKITPEE 378 (391)
T ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------HHHHHHHh-----CCCCCCCCcHHH
Confidence 4445555432122233445556777788888888888888887743 12233332 333558888888
Q ss_pred HHHHH
Q psy6934 106 FTRTL 110 (113)
Q Consensus 106 F~~~l 110 (113)
|.+.+
T Consensus 379 f~~~~ 383 (391)
T PRK12309 379 MRAGL 383 (391)
T ss_pred HHHHH
Confidence 86543
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.27 E-value=2e-06 Score=37.26 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=22.2
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
+++.|+.+|.|++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998763
No 70
>KOG4666|consensus
Probab=98.26 E-value=3.7e-06 Score=57.53 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=74.3
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh-hHHHH--HHhc
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE-MADYC--VERM 85 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~--~~~~ 85 (113)
.-+..+|..+|.+++|.++|.|.+..+ ........+...++-+|+.|+...+|.+...+|.-+|... |.+.+ ...+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~l-avlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTL-AVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhh-eeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccc
Confidence 446788999999999999999999888 7777888999999999999999999999998887777543 43322 2222
Q ss_pred ccccCCCCCCCCCCceehHHHHHHH
Q psy6934 86 KPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 86 ~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
..... ..+|+|+|.+|.+.+
T Consensus 338 ~~i~q-----~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 338 PSIEQ-----KDDPKIYASNFRKFA 357 (412)
T ss_pred hhhhc-----ccCcceeHHHHHHHH
Confidence 22222 235899999996544
No 71
>KOG0030|consensus
Probab=98.18 E-value=3.4e-05 Score=46.84 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=73.1
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCC--CCCCcCHHHHHHHhhHhh-------HH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS--DRPYVTKEELYANLTKEM-------AD 79 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~--~~g~i~~~el~~~l~~~~-------~~ 79 (113)
.+++++|..+|..++|+|++...-.++ +.....++..++......++++ +-.+|+.+++.-++.... .+
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvl--RalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~e 88 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVL--RALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYE 88 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHH--HHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHH
Confidence 788999999999999999999988886 3345667788999999888777 457899988877776554 44
Q ss_pred HHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 80 YCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
...+-+..++ +++.|.|.+.++.+.|.
T Consensus 89 dfvegLrvFD-----keg~G~i~~aeLRhvLt 115 (152)
T KOG0030|consen 89 DFVEGLRVFD-----KEGNGTIMGAELRHVLT 115 (152)
T ss_pred HHHHHHHhhc-----ccCCcceeHHHHHHHHH
Confidence 4555555543 33559999999966553
No 72
>KOG0751|consensus
Probab=98.02 E-value=1e-05 Score=58.19 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHH-hhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 4 EGQPDPEFEAILD-LVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 4 ~~~~~~~~~~~~~-~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
+.....++.++.+ ..|.-+||.|+|+||+.+- ... ..+......+|+.||+.++|.++.+++..++.+.
T Consensus 68 e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe-~~l---C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 68 ESNFNDKIVRLLASIADQTKDGLISFQEFRAFE-SVL---CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred cccCChHHHHHHHhhhhhcccccccHHHHHHHH-hhc---cCchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3344455555554 4577889999999999875 433 3346678899999999999999999999988553
No 73
>KOG2562|consensus
Probab=98.02 E-value=1.4e-05 Score=56.88 Aligned_cols=97 Identities=12% Similarity=0.273 Sum_probs=65.0
Q ss_pred ChHHHHHHHHh----hCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-----
Q psy6934 7 PDPEFEAILDL----VDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM----- 77 (113)
Q Consensus 7 ~~~~~~~~~~~----~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----- 77 (113)
|..=++++|+. .-.-.+|+++|.+|+-++ ... ....+..-+.-+|+.+|.+++|.|+..||+.+.....
T Consensus 309 t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~Fi-lA~-e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~ 386 (493)
T KOG2562|consen 309 TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFI-LAE-EDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMEC 386 (493)
T ss_pred hhHHHHHHHhhccccceeeecCcccHHHHHHHH-HHh-ccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHh
Confidence 34446778872 223467889999999987 432 4456667888999999999999999999988765431
Q ss_pred -------HHHHHHhcccccCCCCCCCCCCceehHHHHHH
Q psy6934 78 -------ADYCVERMKPYVDPKTERGIPGALDYIEFTRT 109 (113)
Q Consensus 78 -------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 109 (113)
.+.+...|..+..+. ..++|+.++|...
T Consensus 387 ~~~e~l~fed~l~qi~DMvkP~----~~~kItLqDlk~s 421 (493)
T KOG2562|consen 387 MGQEALPFEDALCQIRDMVKPE----DENKITLQDLKGS 421 (493)
T ss_pred cCCCcccHHHHHHHHHHHhCcc----CCCceeHHHHhhc
Confidence 222222222222111 3489999999653
No 74
>KOG0041|consensus
Probab=98.01 E-value=1.3e-05 Score=51.57 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHH----HHHHhcccccCCCCCCCCCCceehHHHHH
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKEMAD----YCVERMKPYVDPKTERGIPGALDYIEFTR 108 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~----~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 108 (113)
.+..+|+.||.+.+|+|+..||+.++.++|.. -+..+|++. |.|.||+|+|-+|.-
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeV-----ded~dgklSfreflL 159 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEV-----DEDFDGKLSFREFLL 159 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHh-----hcccccchhHHHHHH
Confidence 56678999999999999999999999999822 234555553 344779999999953
No 75
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.00 E-value=1.4e-05 Score=36.23 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=23.3
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 10 EFEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 10 ~~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
++..+|..+|.+++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l 26 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAIL 26 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 57889999999999999999999988
No 76
>KOG0377|consensus
Probab=97.98 E-value=5.2e-05 Score=54.08 Aligned_cols=68 Identities=18% Similarity=0.320 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhCCCCCcceeHHHHHHHHh--hhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMI--SKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 8 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~--~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
.+.++.+|+.+|.|.+|.|+.+||...+. +...+...+..++.+.-+..|-+++|.|+..||..+++-
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 35678899999999999999999987642 345677788889999999999999999999999887654
No 77
>KOG2643|consensus
Probab=97.97 E-value=1.3e-05 Score=56.82 Aligned_cols=103 Identities=12% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhc-cC-----------CcC-cHHHHHHH--HHhhCCCCCCCcCHHHH
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE-TE-----------NVQ-SSEEIENA--FHAIAASDRPYVTKEEL 69 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~-~~-----------~~~-~~~~~~~~--f~~~D~~~~g~i~~~el 69 (113)
.+++..+...|..+|.|++|.|+-+||..+..... .. ... ..-.+..+ -.-|-++++++++.++|
T Consensus 229 S~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF 308 (489)
T KOG2643|consen 229 SIPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEF 308 (489)
T ss_pred ccCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHH
Confidence 35566677778889999999999999987652100 00 000 11122222 23356788899999999
Q ss_pred HHHhhHhhHHHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 70 YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.+++..+..+.+.-.+.++..++ .|.|+-.+|..+|+.
T Consensus 309 ~~F~e~Lq~Eil~lEF~~~~~~~-----~g~Ise~DFA~~lL~ 346 (489)
T KOG2643|consen 309 LKFQENLQEEILELEFERFDKGD-----SGAISEVDFAELLLA 346 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhCccc-----ccccCHHHHHHHHHH
Confidence 99998888887777777765322 278888888887763
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.89 E-value=6.3e-05 Score=53.32 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=47.6
Q ss_pred ChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 7 PDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 7 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
....+..+|+.+|.+++|.|+.+||+. ...+|..+|.+++|.|+.+||...+..
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG---------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH---------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 357789999999999999999999952 357899999999999999999998764
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.80 E-value=0.00011 Score=37.06 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=36.4
Q ss_pred ceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 25 HVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 25 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
+++|.|...++ +..+-...++.+..+|+..|++++|++..+||..++..+
T Consensus 1 kmsf~Evk~lL--k~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLL--KMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHH--HHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHH--HHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47888888776 334456677788889999999999999999999887653
No 80
>KOG0041|consensus
Probab=97.75 E-value=0.00018 Score=46.40 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=55.1
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
..+..+|..||.+.||.|++.|...+| . .+.-+.+.--++.+....|.|.+|+|+..++.-++++.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mm-E-KLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMM-E-KLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHH-H-HhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 344678899999999999999999887 4 34556667788999999999999999999988777654
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.74 E-value=0.00021 Score=41.68 Aligned_cols=63 Identities=14% Similarity=0.272 Sum_probs=50.3
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.....+|...++ ++|.|+-+.-..++ . +...+.+.+..+|...|.+++|+++.+||.-+++-.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f-~---~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFF-M---KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHH-H---HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHH-H---HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 445677777775 57999999998887 3 356788999999999999999999999998877543
No 82
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.72 E-value=0.00059 Score=38.75 Aligned_cols=66 Identities=5% Similarity=0.088 Sum_probs=51.7
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhhhc---cCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFMISKE---TENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~---~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
+-.+|..|. ...+.++..||..++.... ......+..+..+|+..|.+++|.|+..||..++..+.
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 445666776 3456899999999983322 24455678899999999999999999999999988764
No 83
>KOG4065|consensus
Probab=97.71 E-value=0.00013 Score=42.95 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=44.4
Q ss_pred HHHHhhCCCCCCCcCHHHHHHHhhHhh--------------HHHHHHhcccccCCCCCCCCCCceehHHHHHH
Q psy6934 51 NAFHAIAASDRPYVTKEELYANLTKEM--------------ADYCVERMKPYVDPKTERGIPGALDYIEFTRT 109 (113)
Q Consensus 51 ~~f~~~D~~~~g~i~~~el~~~l~~~~--------------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 109 (113)
..|++.|.+++|+|+--||..++.... ..++..++....+.+ |.++||.|+|-||.+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~Dd-DfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDD-DFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhccc-ccCCCceeeHHHHHhh
Confidence 478999999999999999998885321 345555555544555 7889999999999875
No 84
>KOG4251|consensus
Probab=97.64 E-value=0.00021 Score=47.58 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=47.6
Q ss_pred cHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhccc---ccCCCCCCCCCCceehHHHHHH
Q psy6934 45 SSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKP---YVDPKTERGIPGALDYIEFTRT 109 (113)
Q Consensus 45 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~---~~~~~~d~~~~g~I~~~eF~~~ 109 (113)
....++.+|...|.+.+|+|+..|+++++.+...+.+.+.+.. ++.. +|.++||.|+|++|.-.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFra-VDpdgDGhvsWdEykvk 165 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRA-VDPDGDGHVSWDEYKVK 165 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheee-eCCCCCCceehhhhhhH
Confidence 3468999999999999999999999999987654444333322 2222 36678999999999543
No 85
>KOG4251|consensus
Probab=97.64 E-value=6.1e-05 Score=50.03 Aligned_cols=48 Identities=21% Similarity=0.119 Sum_probs=26.5
Q ss_pred cCHHHHHHHhhHhh-HHHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 64 VTKEELYANLTKEM-ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 64 i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
++.+|+..+|++.. ..-+..+++..... +|+++|..++-.+|+....|
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrd-lDqdgDkqlSvpeFislpvG 264 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRD-LDQDGDKQLSVPEFISLPVG 264 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHH-hccCCCeeecchhhhcCCCc
Confidence 34467777776553 22222222222211 36667799999999876543
No 86
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.57 E-value=0.0001 Score=31.63 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=11.2
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHh
Q psy6934 50 ENAFHAIAASDRPYVTKEELYANL 73 (113)
Q Consensus 50 ~~~f~~~D~~~~g~i~~~el~~~l 73 (113)
+.+|+.+|.+++|.|+..+|..++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 344444444444444444444443
No 87
>KOG0040|consensus
Probab=97.53 E-value=0.00053 Score=55.29 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=57.8
Q ss_pred CCCChH---HHHHHHHhhCCCCCcceeHHHHHHHHhhhcc-----CCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 4 EGQPDP---EFEAILDLVDPNRDGHVSLQEYMAFMISKET-----ENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 4 ~~~~~~---~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~-----~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
.|.|++ ++..+|.-||++.+|.+++++|..++.+... ....++-++.+.....|++.+|+|+..+...++.+
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 466665 4567888999999999999999999854222 22334458999999999999999999999998865
Q ss_pred h
Q psy6934 76 E 76 (113)
Q Consensus 76 ~ 76 (113)
.
T Consensus 2325 ~ 2325 (2399)
T KOG0040|consen 2325 K 2325 (2399)
T ss_pred c
Confidence 4
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.49 E-value=2.4e-05 Score=46.33 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-HHHHHHhcccccCCCCCCCCCCceehHHHHH
Q psy6934 44 QSSEEIENAFHAIAASDRPYVTKEELYANLTKEM-ADYCVERMKPYVDPKTERGIPGALDYIEFTR 108 (113)
Q Consensus 44 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 108 (113)
.-...+...|..+|.+++|.|+..||..+...+. .+.+..-+..++ |.++||.|+..||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~C----D~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSC----DVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-----TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHc----CCCCCCCCCHHHHcc
Confidence 3445788899999999999999999988776442 222333333334 334779999999965
No 89
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.41 E-value=0.00057 Score=39.85 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh--HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 46 SEEIENAFHAIAASDRPYVTKEELYANLTKEM--ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 46 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
......+|+..+. ++|.|+.++.+.++.+.+ .+.+..+.... |.+++|.++++||+-+|+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~La-----D~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLA-----DIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH------SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhh-----cCCCCCcCCHHHHHHHHH
Confidence 4577889999985 589999999999998766 55566555443 334679999999998774
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.41 E-value=0.00027 Score=30.23 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 10 EFEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 10 ~~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
+++.+|..+|.+++|.|++.+|..++
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 46789999999999999999999887
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.37 E-value=0.00035 Score=38.87 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=33.8
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhhhccCC-cCcHHHHHHHHHhhCCC----CCCCcCHHHHHHHhh
Q psy6934 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETEN-VQSSEEIENAFHAIAAS----DRPYVTKEELYANLT 74 (113)
Q Consensus 10 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~~f~~~D~~----~~g~i~~~el~~~l~ 74 (113)
+|..+|..+.. +.+.|+.++|..++ ....+. ..+.+.+..+++.|.++ ..+.++.++|..+|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL-~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFL-REEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHH-HHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHH-HHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 46677777744 55667777777777 333332 23455555555555332 234455555544443
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.34 E-value=0.00013 Score=43.23 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=42.0
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYA 71 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~ 71 (113)
..+.-.|...|.|++|.|+-.|+..+. ... ...+..++..|+..|.+++|.|+..|...
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~-~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLR-RPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGG-STT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHH-HHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 456778899999999999999998775 322 34445688899999999999999998754
No 93
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.23 E-value=0.0012 Score=36.73 Aligned_cols=62 Identities=32% Similarity=0.476 Sum_probs=46.6
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHhh------HHHHHHhccccc-CCCCCCCCCCceehHHHHHHHhc
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKEM------ADYCVERMKPYV-DPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~------~~~~~~~~~~~~-~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
++..+|+.+-. +.+.|+.++|..+|...+ .+.+.+++.++. +. .....+.+++++|.+.|+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~--~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDE--RNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHH--HHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccch--hhcccCCcCHHHHHHHHCC
Confidence 47789999955 799999999999997654 566777777764 21 0012389999999999875
No 94
>KOG0046|consensus
Probab=97.11 E-value=0.0016 Score=47.48 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=25.1
Q ss_pred CCCcceeHHHHHHHHhhhc-cCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 21 NRDGHVSLQEYMAFMISKE-TENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 21 ~~~g~i~~~ef~~~~~~~~-~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
+++|.|+..+...++.... ......+++++++....+.+.+|.|+.++|..++-.+
T Consensus 30 ~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 30 DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4455555555555541111 1112233445555555555555555555555444333
No 95
>KOG1029|consensus
Probab=97.08 E-value=0.0036 Score=47.77 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKEM-ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
..+..|+.+|+..+|+++...-+.+|...+ .+.....|=... |.|+||+++-+||+-+|+
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~Ls----Dvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLS----DVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeee----ccCCCCcccHHHHHHHHH
Confidence 356789999999999999999888887655 333333322222 556789999999998775
No 96
>PLN02952 phosphoinositide phospholipase C
Probab=96.99 E-value=0.0052 Score=45.98 Aligned_cols=90 Identities=10% Similarity=0.157 Sum_probs=59.0
Q ss_pred CCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh------HHHHHHhcccccCCC--C
Q psy6934 22 RDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM------ADYCVERMKPYVDPK--T 93 (113)
Q Consensus 22 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~------~~~~~~~~~~~~~~~--~ 93 (113)
+.|.++|++|..+..........+..++..+|..+-. +.+.|+.++|..+|...+ .+.+..++..+.... .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 3579999999877622223445578899999999954 457899999999998764 233344433222110 0
Q ss_pred CCCCCCceehHHHHHHHhc
Q psy6934 94 ERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 94 d~~~~g~I~~~eF~~~l~~ 112 (113)
.....+.++++.|...|+.
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 0112246999999988874
No 97
>KOG0038|consensus
Probab=96.68 E-value=0.0064 Score=37.55 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=49.2
Q ss_pred HHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHH----HHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 15 LDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIEN----AFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 15 ~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~----~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
|+.+|-|+++.|.-.+....+ ....+...+.+++.. +...-|.+|+|+|+..+|..++.+
T Consensus 114 FkIYDfd~D~~i~~~DL~~~l-~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 114 FKIYDFDGDEFIGHDDLEKTL-TSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred eEEeecCCCCcccHHHHHHHH-HHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 456799999999999998888 777777888876654 456669999999999999988755
No 98
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.67 E-value=0.0035 Score=31.67 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=25.8
Q ss_pred CCCCChHHHHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 3 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
.-.+.+..+..+|+.+|.+++|.++.+||..++
T Consensus 15 NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 15 NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp T----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 445678889999999999999999999999886
No 99
>KOG2562|consensus
Probab=96.58 E-value=0.0059 Score=43.98 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=59.9
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHh----hhccCCc--------CcHHHHHHH---HHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFMI----SKETENV--------QSSEEIENA---FHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~~----~~~~~~~--------~~~~~~~~~---f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
+.++|=.+++.++|+|+..+.+.--- ....... -+.+-..-+ |-.+|.+++|.|+.++|...-..
T Consensus 227 i~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~ 306 (493)
T KOG2562|consen 227 IQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH 306 (493)
T ss_pred hhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc
Confidence 45566667999999999998754320 1110000 111223333 67779999999999999988765
Q ss_pred hhHH-HHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 76 EMAD-YCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 76 ~~~~-~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.... .++.++.+...+. =...+|+++|++|+..++.
T Consensus 307 tlt~~ivdRIFs~v~r~~-~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 307 TLTERIVDRIFSQVPRGF-TVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred chhhHHHHHHHhhccccc-eeeecCcccHHHHHHHHHH
Confidence 5432 3334444111110 1123488999999887653
No 100
>KOG0035|consensus
Probab=96.37 E-value=0.029 Score=43.65 Aligned_cols=96 Identities=25% Similarity=0.428 Sum_probs=69.9
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhccccc
Q psy6934 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYV 89 (113)
Q Consensus 10 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~ 89 (113)
++..+....|+++.|.++|.+|...| .+..........+..+|+.+-+... +|..+||..-+-....+.+...+..+.
T Consensus 789 e~~~lvn~~n~l~~~qv~~~e~~ddl-~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~~~d~lv~d~~~~e~~~~~ 866 (890)
T KOG0035|consen 789 EWFRLVNKKNPLIQGQVQLLEFEDDL-EREYEDLDTELRAILAFEDWAKTKA-YLLLEELVRERDELVRDLDIQEMAAYD 866 (890)
T ss_pred HHHHHHhccCcccccceeHHHHHhHh-hhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHhhccHhhHHHHHHhhcccc
Confidence 34455566688888999999999999 7777778888899999999966655 899999988444444555555555544
Q ss_pred -CCCCCCCCCCceehHHHHHHHh
Q psy6934 90 -DPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 90 -~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
+.. -.+.|+|-.|...++
T Consensus 867 ~~~~----~~r~Ld~~~~s~~~~ 885 (890)
T KOG0035|consen 867 EDER----LPRGLDQVKFSSSLY 885 (890)
T ss_pred cCCc----ccccchHHHHHHHhh
Confidence 222 336699998877665
No 101
>KOG0169|consensus
Probab=96.13 E-value=0.022 Score=43.39 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=66.0
Q ss_pred CChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-HHHHHHh
Q psy6934 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM-ADYCVER 84 (113)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~ 84 (113)
.....+..+|..+|++.+|.+++.+-+.++ ...........++..|+..+..+++.+...++..+..... ..++...
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~--~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~ 210 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLL--KQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFL 210 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHH--HHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHH
Confidence 345678889999999999999999988875 2334455666778888888888899999998888876654 1245555
Q ss_pred cccccCCCCCCCCCCceehHHHH
Q psy6934 85 MKPYVDPKTERGIPGALDYIEFT 107 (113)
Q Consensus 85 ~~~~~~~~~d~~~~g~I~~~eF~ 107 (113)
+..+..+. +.++.+++.
T Consensus 211 f~~~s~~~------~~ls~~~L~ 227 (746)
T KOG0169|consen 211 FVQYSHGK------EYLSTDDLL 227 (746)
T ss_pred HHHHhCCC------CccCHHHHH
Confidence 55544333 455555443
No 102
>KOG0169|consensus
Probab=95.61 E-value=0.12 Score=39.50 Aligned_cols=100 Identities=22% Similarity=0.335 Sum_probs=72.0
Q ss_pred CChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh------HH
Q psy6934 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM------AD 79 (113)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~------~~ 79 (113)
+....+..+|+..+..+++++.+++|..+. ... .... ++...|..+-.+ .++++.++|..+|...+ .+
T Consensus 169 l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~-~~~---~~rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~ 242 (746)
T KOG0169|consen 169 LSESKARRLFKESDNSQTGKLEEEEFVKFR-KEL---TKRP-EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLD 242 (746)
T ss_pred hhHHHHHHHHHHHHhhccceehHHHHHHHH-Hhh---ccCc-hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHH
Confidence 455667788888888889999999999987 332 2222 788888888444 89999999999997664 55
Q ss_pred HHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 80 YCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 80 ~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
.+.+++..+.... ..-+.+.++.+.|.+.|+.
T Consensus 243 ~ae~ii~~~e~~k-~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 243 EAEEIIERYEPSK-EFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHHHHhhhhh-hccccceecHHHHHHHhcC
Confidence 6666666553211 1123367999999988875
No 103
>KOG0751|consensus
Probab=95.48 E-value=0.033 Score=40.84 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=44.1
Q ss_pred hHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcC----cH-----------------------------HHHHHHHH
Q psy6934 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQ----SS-----------------------------EEIENAFH 54 (113)
Q Consensus 8 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~----~~-----------------------------~~~~~~f~ 54 (113)
+.-....|..+|..++|.++++++..++..-...+.. +. +..+.+|+
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr 186 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFR 186 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999999999988321111110 11 22345666
Q ss_pred hhCCCCCCCcCHHHHHHHhhHh
Q psy6934 55 AIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 55 ~~D~~~~g~i~~~el~~~l~~~ 76 (113)
..|+.++|+|+.-++...+...
T Consensus 187 ~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 187 EKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HhcccCCCeeeeechHhhhhhh
Confidence 6677777777766666665443
No 104
>KOG4578|consensus
Probab=95.45 E-value=0.012 Score=40.90 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCCCCCCcCHHHH---HHHhhHhh-HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 48 EIENAFHAIAASDRPYVTKEEL---YANLTKEM-ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el---~~~l~~~~-~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.+.+.|..+|+|+++-|...|+ +.++.+.. ...+..-+.+|. |.++|..|+++||...|-
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yC----DlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYC----DLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhc----ccCCCceecHHHHhhhhc
Confidence 5677899999999999999984 45554433 555656666665 444789999999977653
No 105
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.28 E-value=0.19 Score=31.89 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcC------cHHHHHHHHHhhCCCCCCCcCHHHHHHHh
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQ------SSEEIENAFHAIAASDRPYVTKEELYANL 73 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~------~~~~~~~~f~~~D~~~~g~i~~~el~~~l 73 (113)
.+-++.+++||+.++..+.+.+++.|...++.... ...+ ..-++...|-.. .+.+|++..+.++.+.
T Consensus 92 rFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr-~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 92 RFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR-NANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred cCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc-ccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 46778889999999887778899999988873211 1111 234666777765 6778899998888765
No 106
>KOG4065|consensus
Probab=95.09 E-value=0.23 Score=29.56 Aligned_cols=69 Identities=7% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCCChHHHH-HHHHhhCCCCCcceeHHHHHHHHhhhc--------cCCcCcHHHH----HHHHHhhCCCCCCCcCHHHHH
Q psy6934 4 EGQPDPEFE-AILDLVDPNRDGHVSLQEYMAFMISKE--------TENVQSSEEI----ENAFHAIAASDRPYVTKEELY 70 (113)
Q Consensus 4 ~~~~~~~~~-~~~~~~d~~~~g~i~~~ef~~~~~~~~--------~~~~~~~~~~----~~~f~~~D~~~~g~i~~~el~ 70 (113)
..+|+++++ -.|+..|.|++|.++=-|.+..+.+.. ..+..++.++ ..+.+--|.+++|+|+..|+.
T Consensus 61 a~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 61 AKMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred hhCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 457788876 456778999999999999988874311 1222344444 345677799999999999886
Q ss_pred HH
Q psy6934 71 AN 72 (113)
Q Consensus 71 ~~ 72 (113)
..
T Consensus 141 K~ 142 (144)
T KOG4065|consen 141 KR 142 (144)
T ss_pred hh
Confidence 43
No 107
>KOG4578|consensus
Probab=95.02 E-value=0.018 Score=40.06 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
+...|...|+|.++.|+-.|+..+= ....+......-.+..|+..|.|++..|+..|++..|..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK-~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFK-RVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHH-HHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4556778899999999988876653 333344566678889999999999999999999988854
No 108
>KOG1265|consensus
Probab=94.82 E-value=0.15 Score=40.06 Aligned_cols=68 Identities=26% Similarity=0.389 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh--------------HHHHHHhcccccCCCCCCCCCCceehHHHHHH
Q psy6934 44 QSSEEIENAFHAIAASDRPYVTKEELYANLTKEM--------------ADYCVERMKPYVDPKTERGIPGALDYIEFTRT 109 (113)
Q Consensus 44 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~--------------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 109 (113)
-+..++.++|..+-.++..++|.++|..+|...+ ...+..+|..|.... +...+|.|+-+-|++.
T Consensus 218 cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~-~~a~~gqms~dgf~ry 296 (1189)
T KOG1265|consen 218 CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS-DNAEKGQMSTDGFVRY 296 (1189)
T ss_pred CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch-hhhhccccchhhhHHH
Confidence 3446899999999988889999999999997643 556667777776333 5567799999999999
Q ss_pred Hhc
Q psy6934 110 LFQ 112 (113)
Q Consensus 110 l~~ 112 (113)
|++
T Consensus 297 l~g 299 (1189)
T KOG1265|consen 297 LMG 299 (1189)
T ss_pred hhC
Confidence 987
No 109
>KOG0046|consensus
Probab=94.61 E-value=0.25 Score=36.65 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKEM-------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
.++++.|...| +++|+|+..++..++.+.+ .+++...+... +.+.+|.|+|++|+...+
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~-----~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEV-----GVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhcc-----CCCcCCccCHHHHHHHHH
Confidence 37889999999 9999999999999998764 45555555553 344569999999988654
No 110
>KOG3555|consensus
Probab=94.61 E-value=0.086 Score=37.01 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=46.4
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.++..||...|.|.++.++-.|...+. . ...+.-++..|...|...+|.|+..|.-..+...
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~-l-----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIE-L-----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhh-c-----cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 667788888888888888888877765 2 3445577888888888888888888877766543
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.11 E-value=0.92 Score=25.76 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh---------------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKEM---------------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~---------------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
++++.+|+.+ .+.+|.++...|..+|+..- ...+..++... ... ..|+-+.|+.+|.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~-~~~------~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV-QLS------PKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT-TT-------S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc-CCC------CccCHHHHHHHHH
Confidence 5788899999 78899999999988886542 22333333332 122 6799999999886
Q ss_pred c
Q psy6934 112 Q 112 (113)
Q Consensus 112 ~ 112 (113)
.
T Consensus 75 ~ 75 (90)
T PF09069_consen 75 S 75 (90)
T ss_dssp T
T ss_pred h
Confidence 4
No 112
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=93.01 E-value=0.12 Score=30.64 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=24.1
Q ss_pred CChHHHHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
+|+++++.+|..+-.|..|.+.|.+|+.-+
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 689999999999999999999999999987
No 113
>KOG4347|consensus
Probab=92.76 E-value=0.2 Score=37.89 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=46.4
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 69 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 69 (113)
.-+.++|...|.+.+|.++|.+++..+ ... ....--+.++-.|+.+|.++. ....++.
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL-~~l-~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGL-SIL-KAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHH-HHH-HhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 345788999999999999999999887 432 345556788889999999998 8888776
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.74 E-value=0.41 Score=29.85 Aligned_cols=35 Identities=6% Similarity=0.335 Sum_probs=25.8
Q ss_pred CCCCCChHHHHHHHHhhCCCCCcceeHHHHHHHHh
Q psy6934 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 36 (113)
Q Consensus 2 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 36 (113)
+...+|..+++.+|..+-..+...|+|++|+.++.
T Consensus 34 ~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 34 IDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp --SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 45568999999999998666666799999999883
No 115
>KOG1955|consensus
Probab=91.53 E-value=0.47 Score=35.13 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=42.3
Q ss_pred HHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhh
Q psy6934 15 LDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 74 (113)
Q Consensus 15 ~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 74 (113)
|+.+.+|-.|.|+=..=..++ .+...+-+++..+|++.|.+.+|-+++.||..+++
T Consensus 237 FrtvQpDp~gfisGsaAknFF----tKSklpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 237 FRTVQPDPHGFISGSAAKNFF----TKSKLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred hhcccCCcccccccHHHHhhh----hhccCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 444566777888776666665 24566778889999999999999999999888764
No 116
>PLN02222 phosphoinositide phospholipase C 2
Probab=91.50 E-value=0.71 Score=34.87 Aligned_cols=67 Identities=10% Similarity=0.248 Sum_probs=31.7
Q ss_pred CChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCC-cCcHHHHHHHHHhhCC-CCCCCcCHHHHHHHhhH
Q psy6934 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETEN-VQSSEEIENAFHAIAA-SDRPYVTKEELYANLTK 75 (113)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~-~~~~~~~~~~f~~~D~-~~~g~i~~~el~~~l~~ 75 (113)
..+.++..+|..+-. ++.++.++|..++ ...... ..+.+....++..+.. ...+.++.+.|..+|.+
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL-~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFL-IDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHH-HHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 344566666666542 2456666666665 322221 2233444444444321 12344555555555543
No 117
>KOG3555|consensus
Probab=91.40 E-value=0.31 Score=34.35 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=43.4
Q ss_pred cHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 45 SSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 45 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
-...+.++|..+|.+.+|.++..||+.+-....+.-+... ++.. |...||.|+-.||+...
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpF----fnsC-D~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPF----FNSC-DTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHH----Hhhh-cccccCccccchhhhhh
Confidence 3468899999999999999999999877554333322223 3332 33467999999997654
No 118
>PLN02228 Phosphoinositide phospholipase C
Probab=91.30 E-value=0.96 Score=34.11 Aligned_cols=67 Identities=18% Similarity=0.372 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccC-CcCcHHHHHHHHHhhCCC----CCCCcCHHHHHHHhh
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETE-NVQSSEEIENAFHAIAAS----DRPYVTKEELYANLT 74 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~f~~~D~~----~~g~i~~~el~~~l~ 74 (113)
+.++.++..+|..+-.+ +.++.++|..++ ..... ...+.+.+..+|..|... ..|.++.+.|..+|.
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL-~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFV-SEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHH-HHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 34667777787776533 468888887777 43332 223445566666666432 235677777766664
No 119
>PLN02228 Phosphoinositide phospholipase C
Probab=90.84 E-value=2.9 Score=31.65 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 41 ENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 41 ~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
....+..++..+|..+-. ++.++.++|..+|...+ .+.+..++..+.... .....|.++.+.|...|++
T Consensus 18 ~~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 18 KTREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHN-VFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccch-hhcccCccCHHHHHHHhcC
Confidence 445578899999999854 36899999999998764 344556665554211 1112367999999888864
No 120
>KOG1707|consensus
Probab=90.75 E-value=1.3 Score=33.39 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhhHHH-HHHhcccccCCCCCCCCCCceehHHHHH
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKEMADY-CVERMKPYVDPKTERGIPGALDYIEFTR 108 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~~d~~~~g~I~~~eF~~ 108 (113)
+-+...|..||.+++|.++..||..+........ ......... -....|.++|.-|..
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLS 373 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHH
Confidence 3567889999999999999999999887664211 111111110 112348899988854
No 121
>PLN02230 phosphoinositide phospholipase C 4
Probab=90.17 E-value=1.1 Score=34.06 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=40.9
Q ss_pred CcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-------HHHHHHhcccccCCC--CCCCCCCceehHHHHHHHhc
Q psy6934 42 NVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM-------ADYCVERMKPYVDPK--TERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 42 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-------~~~~~~~~~~~~~~~--~d~~~~g~I~~~eF~~~l~~ 112 (113)
...+..+++.+|..|-.+ .+.++.++|..+|...+ .+.+...+..+.... ...-..+.++.+.|.+.|++
T Consensus 24 ~~~p~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 24 ESGPVADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cCCCcHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 345667888888888433 37888888888887654 222333333221000 00012256888888887764
No 122
>KOG3866|consensus
Probab=89.40 E-value=0.33 Score=33.82 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=37.0
Q ss_pred HHHhhCCCCCCCcCHHHHHHHhhHhh----------------HHHHHHhcccccCCCCCCCCCCceehHHHHHH
Q psy6934 52 AFHAIAASDRPYVTKEELYANLTKEM----------------ADYCVERMKPYVDPKTERGIPGALDYIEFTRT 109 (113)
Q Consensus 52 ~f~~~D~~~~g~i~~~el~~~l~~~~----------------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~ 109 (113)
.|...|.+++|+++-.||..++.... .++...+-...... +|++.|.-|+.++|++.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~-vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ-VDTNQDRLVTLEEFLND 321 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh-cccchhhhhhHHHHHhh
Confidence 46677999999999999998876542 11111111111112 36668899999999764
No 123
>KOG2243|consensus
Probab=88.89 E-value=0.7 Score=38.66 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=35.6
Q ss_pred HHHhhCCCCCCCcCHHHHHHHhhHhh---HHHHHHhccccc-CCCCCCCCCCceehHHHHHHHh
Q psy6934 52 AFHAIAASDRPYVTKEELYANLTKEM---ADYCVERMKPYV-DPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 52 ~f~~~D~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~-~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
-|+.||+++.|.|+..+|..++.... ..++.-.+.-.. +.+ ..++|++|+....
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~den------d~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADEN------DMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCcc------ccccHHHHHHHhc
Confidence 47778999999999999999886542 111111111111 333 7899999988654
No 124
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.81 E-value=1.1 Score=27.91 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=43.0
Q ss_pred HHHHHHhhC---CCCCcceeHHHHHHHHhhh-ccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 11 FEAILDLVD---PNRDGHVSLQEYMAFMISK-ETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 11 ~~~~~~~~d---~~~~g~i~~~ef~~~~~~~-~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
++.+|..|- ..+...++-.-|..++.-. ......+...+--+|..+-..+...|+.++|..+|..+.
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 456777762 2334468888898888433 234446777888888887555666799888888877654
No 125
>KOG1029|consensus
Probab=87.72 E-value=1.1 Score=34.96 Aligned_cols=61 Identities=10% Similarity=0.227 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhh
Q psy6934 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 74 (113)
Q Consensus 10 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 74 (113)
....+|+..|+..+|.++-..=..++ .....+...+..+|.+-|.|++|.++.+||.-.++
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL----~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSAL----GQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHH----HhcCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 45678899999999998766555544 23456777899999999999999999999876554
No 126
>KOG1955|consensus
Probab=87.65 E-value=1.6 Score=32.55 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh--HHHHHHhcccccCCCCCCCCCCceehHHHHHHHh
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKEM--ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLF 111 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~ 111 (113)
+....-|+.+-.|-.|+|+-.--+.++.+.. ..++..+.... |.++||.++..|||.++.
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLs-----D~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELS-----DVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhc-----ccCccccccHHHHHhhHh
Confidence 4567789999999999999998888887654 56665554442 445679999999998764
No 127
>KOG0035|consensus
Probab=86.52 E-value=2.1 Score=33.95 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh-----HHHHHHhcccccCCCCCCCCCCceehHHHHHHH
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKEM-----ADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-----~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l 110 (113)
.+++..|+.+++...|.++.+++..+|...| .....+.+.+..+.. |..+-|.+++.+|...|
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~-n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKK-NPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhcc-CcccccceeHHHHHhHh
Confidence 4788899999999999999999999998876 122222222222111 22234889999987765
No 128
>PLN02223 phosphoinositide phospholipase C
Probab=86.51 E-value=2.6 Score=31.64 Aligned_cols=70 Identities=14% Similarity=-0.017 Sum_probs=42.6
Q ss_pred CcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHh---hHhh------HHHHHHhcccccCCC---CCCCCCCceehHHHHHH
Q psy6934 42 NVQSSEEIENAFHAIAASDRPYVTKEELYANL---TKEM------ADYCVERMKPYVDPK---TERGIPGALDYIEFTRT 109 (113)
Q Consensus 42 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l---~~~~------~~~~~~~~~~~~~~~---~d~~~~g~I~~~eF~~~ 109 (113)
...+.++++.+|..+ .++.|.++.+.|.++| ...+ .+.+..++..+.... ....+.+.++.+.|.+.
T Consensus 11 ~~~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 11 PANQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred CCCCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 445677899999888 4677889999988888 4332 223333333222111 00112256999999888
Q ss_pred Hhc
Q psy6934 110 LFQ 112 (113)
Q Consensus 110 l~~ 112 (113)
|++
T Consensus 90 L~s 92 (537)
T PLN02223 90 LFS 92 (537)
T ss_pred hcC
Confidence 875
No 129
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.98 E-value=6.2 Score=30.04 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=47.1
Q ss_pred CcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh------HHHHHHhcccccCCCCCCCCCCceehHHHHHHHhc
Q psy6934 42 NVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM------ADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 42 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~------~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
...+..++..+|..+-. ++.++.++|..+|...+ .+.+..++..+.... ..+.++++.|.+.|++
T Consensus 20 ~~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~----~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 20 ASEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLL----HRNGLHLDAFFKYLFG 90 (581)
T ss_pred cCCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhh----hccCcCHHHHHHHhcC
Confidence 34466699999999853 57999999999998764 345566666543111 2367999999988875
No 130
>KOG4347|consensus
Probab=85.76 E-value=1.7 Score=33.20 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=35.4
Q ss_pred eeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 26 VSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 26 i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
|+|..|...+ .....-..+..-+...|+.+|.+++|.|+..+|...|..+.
T Consensus 535 i~~~~f~~~f-~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 535 IDYAQFLEVF-RELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHhhHHHHh-hccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 4444455444 22222234445677899999999999999999999887765
No 131
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=81.96 E-value=5.7 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=27.0
Q ss_pred HHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 47 EEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 47 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
+.+.++|..+++.+.+.+|..|+.+++...
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 689999999999889999999999998763
No 132
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.95 E-value=3.9 Score=22.04 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=36.4
Q ss_pred cceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh-hHHHHHHhcc
Q psy6934 24 GHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE-MADYCVERMK 86 (113)
Q Consensus 24 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~ 86 (113)
-.|+|...+..+ ... .+...+..+...|+.=..+.|+.++|.+.++.. |.+.+...+.
T Consensus 7 p~~~F~~L~~~l-~~~----l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~ 65 (70)
T PF12174_consen 7 PWMPFPMLFSAL-SKH----LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIK 65 (70)
T ss_pred CcccHHHHHHHH-HHH----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888877777 432 333344444444444468899999999998876 4555555543
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=79.87 E-value=18 Score=27.76 Aligned_cols=67 Identities=10% Similarity=0.187 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccC-CcCcHHHHHHHHHhh-------CCCCCCCcCHHHHHHHhhH
Q psy6934 7 PDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETE-NVQSSEEIENAFHAI-------AASDRPYVTKEELYANLTK 75 (113)
Q Consensus 7 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~-~~~~~~~~~~~f~~~-------D~~~~g~i~~~el~~~l~~ 75 (113)
+..++..+|..+-.++ +.++.++|..++ ..... ...+.+....++..+ ...+.+.++.+.|..+|..
T Consensus 36 ~r~ei~~lf~~~~~~~-~~mt~~~l~~FL-~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 36 PPDDVKDVFCKFSVGG-GHMGADQLRRFL-VLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ChHHHHHHHHHHhCCC-CccCHHHHHHHH-HHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 5689999999985443 579999999998 44333 234455555554432 1123356899999998854
No 134
>PLN02230 phosphoinositide phospholipase C 4
Probab=79.41 E-value=22 Score=27.32 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCC--cCcHHHHHHHHHhh-------CCCCCCCcCHHHHHHHhhH
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETEN--VQSSEEIENAFHAI-------AASDRPYVTKEELYANLTK 75 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~--~~~~~~~~~~f~~~-------D~~~~g~i~~~el~~~l~~ 75 (113)
..++.++..+|..+-.++ +.++.++|..++ ...+.. ..+.+.+..++..+ ..-+.+.++.+.|..+|.+
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL-~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLM-AEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHH-HHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 346789999999996444 689999999998 444322 23455555555433 1223456999999998865
No 135
>KOG4666|consensus
Probab=79.25 E-value=4.1 Score=28.81 Aligned_cols=68 Identities=10% Similarity=0.018 Sum_probs=50.7
Q ss_pred ChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 7 PDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 7 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
|+.=++--|+.|+.+.||.+.-.+|-.++.... ....-.+-..|+.++...+|+|+.++++++....+
T Consensus 294 t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l---gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 294 TPVIIQYAFKRFSVAEDGISGEHILSLILQVVL---GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred cHHHHHHHHHhcccccccccchHHHHHHHHHhc---CcceeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 445667788999999999999888776662221 22233455689999999999999999999876653
No 136
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=77.88 E-value=3.4 Score=16.78 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=6.3
Q ss_pred CCCCCCCcCHHHH
Q psy6934 57 AASDRPYVTKEEL 69 (113)
Q Consensus 57 D~~~~g~i~~~el 69 (113)
|.+++|.|+.-++
T Consensus 1 DvN~DG~vna~D~ 13 (21)
T PF00404_consen 1 DVNGDGKVNAIDL 13 (21)
T ss_dssp -TTSSSSSSHHHH
T ss_pred CCCCCCcCCHHHH
Confidence 3455555555444
No 137
>KOG3866|consensus
Probab=76.74 E-value=5 Score=28.23 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=39.2
Q ss_pred HHHhhCCCCCcceeHHHHHHHHhhhc--c-CCcCcHHHH----------H-HHHHhhCCCCCCCcCHHHHHHHh
Q psy6934 14 ILDLVDPNRDGHVSLQEYMAFMISKE--T-ENVQSSEEI----------E-NAFHAIAASDRPYVTKEELYANL 73 (113)
Q Consensus 14 ~~~~~d~~~~g~i~~~ef~~~~~~~~--~-~~~~~~~~~----------~-~~f~~~D~~~~g~i~~~el~~~l 73 (113)
+|...|.|++|.++-.|.-+++.... . .....+..+ + .+.+..|.+.+.-||.+||...-
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhh
Confidence 45566789999999999887773211 1 111111111 1 25788899999999999887643
No 138
>KOG0998|consensus
Probab=75.20 E-value=1.6 Score=34.58 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=51.0
Q ss_pred HHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhh
Q psy6934 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 74 (113)
Q Consensus 10 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 74 (113)
.+..+|...|.+.+|.|+..++...+ .. .......+..+|...|.++.|.|+..++.-.+.
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f-~~---~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIF-LP---FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHhccccCCCccccccccccc-cc---CCCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 44567888999999999999999987 43 577778999999999999999999997665543
No 139
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=74.49 E-value=10 Score=23.31 Aligned_cols=50 Identities=10% Similarity=0.186 Sum_probs=28.1
Q ss_pred HHHHHHHHhhCCCC-------CcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCC
Q psy6934 9 PEFEAILDLVDPNR-------DGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 59 (113)
Q Consensus 9 ~~~~~~~~~~d~~~-------~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 59 (113)
..++++++.+..+| .+.|+|+.|..+|.. .+....+++--+..|..|=..
T Consensus 25 kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~-yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 25 KKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKT-YLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp --HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHH-HTT-S--HHHHHHHHHHS---
T ss_pred HHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHH-HHcCCCCHHHHHHHHHHHhCc
Confidence 35566676664332 347999999999944 444447777778888888443
No 140
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=73.88 E-value=6.5 Score=22.29 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=24.0
Q ss_pred CcceeHHHHHHHHh--hhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 23 DGHVSLQEYMAFMI--SKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 23 ~g~i~~~ef~~~~~--~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
||.++-.|--.+-. ...+ ..+.++...+...+........+..++.+.+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERF--GLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46677666544321 1111 223344444444443444445666666666554
No 141
>KOG4286|consensus
Probab=73.52 E-value=8.2 Score=30.37 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 12 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 12 ~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
.-+++.||+.++|.|..-+|...+ ... .....++.++.+|+.....++-++ ...|-.+|+.
T Consensus 473 N~llNvyD~~R~g~irvls~ki~~-i~l-ck~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~d 533 (966)
T KOG4286|consen 473 NWLLNVYDTGRTGRIRVLSFKIGI-ISL-CKAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHD 533 (966)
T ss_pred HHHHHhcccCCCcceEEeeehhhH-HHH-hcchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHH
Confidence 456789999999999999998876 333 345667788899999877666554 5555555543
No 142
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=72.75 E-value=7.8 Score=18.77 Aligned_cols=29 Identities=38% Similarity=0.511 Sum_probs=20.5
Q ss_pred HHHHHHHhhCC--CCCCCcCHHHHHHHhhHh
Q psy6934 48 EIENAFHAIAA--SDRPYVTKEELYANLTKE 76 (113)
Q Consensus 48 ~~~~~f~~~D~--~~~g~i~~~el~~~l~~~ 76 (113)
.+..+|..|.. ....+++..||+.++...
T Consensus 7 ~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 7 TIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 56677877742 335679999998888664
No 143
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.41 E-value=5.4 Score=24.08 Aligned_cols=66 Identities=8% Similarity=0.046 Sum_probs=39.5
Q ss_pred HHHHHHHHhhCCCC--CcceeHHHHHHHHhhhcc-------CCcC----------cHHHHHHHHHhhCCCCCCCcCHHHH
Q psy6934 9 PEFEAILDLVDPNR--DGHVSLQEYMAFMISKET-------ENVQ----------SSEEIENAFHAIAASDRPYVTKEEL 69 (113)
Q Consensus 9 ~~~~~~~~~~d~~~--~g~i~~~ef~~~~~~~~~-------~~~~----------~~~~~~~~f~~~D~~~~g~i~~~el 69 (113)
..+.++|.....+. +..++..+...++ +... +... .+--+.+.+..||++++|+|+.-.+
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L-~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLL-SSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHH-HHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHH-HHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 45566776655443 4569999887776 3211 1111 1124667899999999999999999
Q ss_pred HHHhhH
Q psy6934 70 YANLTK 75 (113)
Q Consensus 70 ~~~l~~ 75 (113)
+..|..
T Consensus 120 KvaL~~ 125 (127)
T PF09068_consen 120 KVALIT 125 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887754
No 144
>KOG0039|consensus
Probab=69.33 E-value=21 Score=27.62 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=35.6
Q ss_pred CcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 23 DGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 23 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
+| +++++|. + .....+..++..|..+|. .+|.++.+++..++...
T Consensus 2 ~~-~~~~~~~-~------~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~ 46 (646)
T KOG0039|consen 2 EG-ISFQELK-I------TDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSS 46 (646)
T ss_pred CC-cchhhhc-c------cCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHH
Confidence 46 8888888 2 245667789999999988 89999999988877543
No 145
>KOG2243|consensus
Probab=68.91 E-value=15 Score=31.60 Aligned_cols=59 Identities=15% Similarity=0.270 Sum_probs=42.9
Q ss_pred HHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 14 ILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 14 ~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
.|+.+|++|.|.|+-.+|...|.+.. .-+..++.-...--..+.+..++.++|..-++.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k---~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK---HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc---cchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 46788999999999999999994332 334445555566666777788888888766543
No 146
>KOG2871|consensus
Probab=68.82 E-value=5.6 Score=28.61 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=28.3
Q ss_pred cHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 45 SSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 45 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
+.+.++.+|+.+|+.++|+|+-.-++.++....
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 457899999999999999999998888876543
No 147
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.72 E-value=3.1 Score=22.00 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=19.0
Q ss_pred HhhCCCCCCCcCHHHHHHHhhH
Q psy6934 54 HAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 54 ~~~D~~~~g~i~~~el~~~l~~ 75 (113)
+.||...+.+|+.+++.++...
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999998754
No 148
>KOG4403|consensus
Probab=65.77 E-value=22 Score=26.32 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=42.0
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
.++-+-+..+.+.+|.|.+|.|+.+|=-.++ ...++-.++...=.+.|.. .+..|+.++|......
T Consensus 64 klg~EAir~iHrqmDDD~nG~Id~~ESdeFl-rEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDDDHNGSIDVEESDEFL-REDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred hhhHHHHHHHHHhcccccCCCcccccchHHH-HHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 4555677888888888888889888766665 3323333444444445542 3557888888776543
No 149
>KOG1954|consensus
Probab=65.20 E-value=6.1 Score=28.74 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=10.8
Q ss_pred HHHHHHHhhCCCCCCCcCHHHH
Q psy6934 48 EIENAFHAIAASDRPYVTKEEL 69 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el 69 (113)
-+-.+|+.-|.+.+|.++.+||
T Consensus 478 vlgkiwklad~d~dg~ld~eef 499 (532)
T KOG1954|consen 478 VLGKIWKLADIDKDGMLDDEEF 499 (532)
T ss_pred HHHhhhhhhcCCcccCcCHHHH
Confidence 3444455555555555555554
No 150
>KOG4070|consensus
Probab=64.61 E-value=9.1 Score=24.02 Aligned_cols=52 Identities=8% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHH---hhhccCCcCcHHHHHHHHHhh
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFM---ISKETENVQSSEEIENAFHAI 56 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~---~~~~~~~~~~~~~~~~~f~~~ 56 (113)
.+|..+....|+.+---.-+.++|++|...+ +....+....++.+.++.+.+
T Consensus 53 ~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 53 SVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLL 107 (180)
T ss_pred cccccccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 4455566666665544445579999995554 223445556666777766665
No 151
>KOG0042|consensus
Probab=64.28 E-value=24 Score=27.08 Aligned_cols=69 Identities=7% Similarity=0.184 Sum_probs=43.7
Q ss_pred CChHHHH---HHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 6 QPDPEFE---AILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 6 ~~~~~~~---~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.+++++. ..|..+|.++.|.++.+..+.+| .... ..-++..+.+..+..|..-+|++...|+.+++...
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vl-k~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVL-KSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH-HHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 4455553 44566677777777777777777 2221 34555666666666766677777777777666544
No 152
>KOG0042|consensus
Probab=63.55 E-value=8.8 Score=29.27 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHhh----HHHHHHhccccc-CCCCCCCCCCceehHHHHHHH
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKEM----ADYCVERMKPYV-DPKTERGIPGALDYIEFTRTL 110 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----~~~~~~~~~~~~-~~~~d~~~~g~I~~~eF~~~l 110 (113)
..+.-|..+|.++.|+++..+..++|.+.. .+.+.+.+.+.. ..+ |.+...+|.+.+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~------g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLN------GFVELREFLQLM 655 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc------ceeeHHHHHHHH
Confidence 345679999999999999999999998775 455555555544 334 888888886654
No 153
>KOG2871|consensus
Probab=63.32 E-value=18 Score=26.22 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=43.9
Q ss_pred CChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHH
Q psy6934 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 69 (113)
Q Consensus 6 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el 69 (113)
-..+++.+.|..+|+.+.|.|+-.-+..+| ..........+.+...=+.+|+++-|.|-..++
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm-~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVM-TALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHH-HHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 346899999999999999999999998887 333223334445544445667777776655543
No 154
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=61.58 E-value=6.4 Score=23.29 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=19.0
Q ss_pred CCCCCChHHHHHHHHhhCC--------CCCcceeHHHHHHHH
Q psy6934 2 VEEGQPDPEFEAILDLVDP--------NRDGHVSLQEYMAFM 35 (113)
Q Consensus 2 ~~~~~~~~~~~~~~~~~d~--------~~~g~i~~~ef~~~~ 35 (113)
|..+.|+++++++++.++. ...|.+.|...+..+
T Consensus 34 I~~~Ltkeevee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F 75 (113)
T PF08963_consen 34 IRKGLTKEEVEEFLRLCEELSEELEEQKAEGFVIFDPLLAQF 75 (113)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4567888888888877642 245777777776666
No 155
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=59.62 E-value=27 Score=19.55 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.5
Q ss_pred cHHHHHHHHHhhCCCCCCCc
Q psy6934 45 SSEEIENAFHAIAASDRPYV 64 (113)
Q Consensus 45 ~~~~~~~~f~~~D~~~~g~i 64 (113)
+.+++.+||+.+..+++..+
T Consensus 57 S~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 57 SQMELEEAFRLYELNKDSEL 76 (83)
T ss_pred CHHHHHHHHHHHHhcCcccE
Confidence 66789999999987776544
No 156
>PLN02223 phosphoinositide phospholipase C
Probab=57.22 E-value=85 Score=23.97 Aligned_cols=70 Identities=7% Similarity=-0.042 Sum_probs=42.9
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHH---hhhccCCcCcHHHHHHHHHhhCC--------CCCCCcCHHHHHHHh
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFM---ISKETENVQSSEEIENAFHAIAA--------SDRPYVTKEELYANL 73 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~---~~~~~~~~~~~~~~~~~f~~~D~--------~~~g~i~~~el~~~l 73 (113)
...+.++..+|..+- .+.|.++.+.+..++ ....-....+.++...++..+-. ...+.++.+.|..+|
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 347899999999984 456678877766655 22222223344444444443311 123669999999988
Q ss_pred hH
Q psy6934 74 TK 75 (113)
Q Consensus 74 ~~ 75 (113)
.+
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 65
No 157
>KOG4403|consensus
Probab=53.12 E-value=22 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=41.2
Q ss_pred CCCcceeHHHHHHHHhhhccC---CcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 21 NRDGHVSLQEYMAFMISKETE---NVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 21 ~~~g~i~~~ef~~~~~~~~~~---~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.|+......||+.+. .+... .....+.++.+-+..|.|++|.|+.+|=-.+|+..
T Consensus 40 agds~at~nefc~~~-~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEd 97 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVD-APECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRED 97 (575)
T ss_pred cCCchhhhccchhcC-CchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHH
Confidence 456677888888765 33222 34466789999999999999999999987777654
No 158
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=51.71 E-value=6.2 Score=19.26 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=18.9
Q ss_pred CCCCCChHHHHHHHHhhCCCCCcceeHHHHHHH
Q psy6934 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAF 34 (113)
Q Consensus 2 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 34 (113)
++.|+++.++..+.+.... ...++.++.+..
T Consensus 11 ~~LGy~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 11 ISLGYSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHTTS-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 4578888888888877643 223556666554
No 159
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=48.98 E-value=76 Score=20.98 Aligned_cols=42 Identities=5% Similarity=0.184 Sum_probs=27.3
Q ss_pred CcceeHHHHHHHHhhhccCCcC-----------cHHHHHHHHHhhCCCCCCCcC
Q psy6934 23 DGHVSLQEYMAFMISKETENVQ-----------SSEEIENAFHAIAASDRPYVT 65 (113)
Q Consensus 23 ~g~i~~~ef~~~~~~~~~~~~~-----------~~~~~~~~f~~~D~~~~g~i~ 65 (113)
.|.++|+.++.-| .....+.. ..+.+...-+.||++.+|.|-
T Consensus 175 ~geldFn~iL~~M-k~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 175 KGELDFNDILDKM-KLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred cCCCcHHHHHHHH-HHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCcee
Confidence 4679999999988 44322111 113455667888888888764
No 160
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=48.92 E-value=11 Score=22.03 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=18.6
Q ss_pred HhhCCCCCCCcCHHHHHHHhhH
Q psy6934 54 HAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 54 ~~~D~~~~g~i~~~el~~~l~~ 75 (113)
+.||.+.+.+||.+++.++...
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 4689999999999999998754
No 161
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=48.44 E-value=49 Score=18.61 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhh
Q psy6934 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLT 74 (113)
Q Consensus 5 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~ 74 (113)
.+|+.++++.++..=.+ .-.|.+.+|...+ ....+ .....+....=..+|--.+++||.=||--..+
T Consensus 3 rITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L-~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFGK-RTIVPWSEFRQAL-QKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp --SSHHHHHHHHHHHTT--SEEEHHHHHHHH-HHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred eeccHHHHHHHHHHCCC-CeEeeHHHHHHHH-HHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 47889999999864333 2469999999998 43322 23333444444678899999999988765543
No 162
>KOG1264|consensus
Probab=46.90 E-value=52 Score=26.70 Aligned_cols=90 Identities=21% Similarity=0.228 Sum_probs=45.9
Q ss_pred CCCcceeHHHHHHHHhhhccCCcCcH--HHHHHHHHh--hCCCCCCCcCHHHHHHHhhHhhHH-------HHHHhccccc
Q psy6934 21 NRDGHVSLQEYMAFMISKETENVQSS--EEIENAFHA--IAASDRPYVTKEELYANLTKEMAD-------YCVERMKPYV 89 (113)
Q Consensus 21 ~~~g~i~~~ef~~~~~~~~~~~~~~~--~~~~~~f~~--~D~~~~g~i~~~el~~~l~~~~~~-------~~~~~~~~~~ 89 (113)
-+.+.++|+.|..+. .+.+...... .+...+|-. -+...--.++..+|.++|...+.+ .+...+..+.
T Consensus 192 ~~k~dlsf~~f~~ly-~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~ 270 (1267)
T KOG1264|consen 192 ARKDDLSFEQFHLLY-KKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFI 270 (1267)
T ss_pred hccccccHHHHHHHH-HHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH
Confidence 456678888888776 3322222111 122222221 122223468999999998654411 1222222222
Q ss_pred -CCCCCCCCCCceehHHHHHHHhc
Q psy6934 90 -DPKTERGIPGALDYIEFTRTLFQ 112 (113)
Q Consensus 90 -~~~~d~~~~g~I~~~eF~~~l~~ 112 (113)
+.. .--....+.+.||+..|+.
T Consensus 271 ~D~~-re~~EPyl~v~EFv~fLFS 293 (1267)
T KOG1264|consen 271 DDTM-RETAEPYLFVDEFVTFLFS 293 (1267)
T ss_pred hhhh-hhccCcceeHHHHHHHHhh
Confidence 111 1112257999999998875
No 163
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=45.34 E-value=24 Score=18.45 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=18.8
Q ss_pred HHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 50 ENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 50 ~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
..||+.| .+.+|.|+..++...|.-
T Consensus 10 dkA~e~y-~~~~g~i~lkdIA~~Lgv 34 (60)
T PF10668_consen 10 DKAFEIY-KESNGKIKLKDIAEKLGV 34 (60)
T ss_pred HHHHHHH-HHhCCCccHHHHHHHHCC
Confidence 3566666 667999999999887743
No 164
>KOG4004|consensus
Probab=44.84 E-value=11 Score=24.89 Aligned_cols=54 Identities=9% Similarity=0.065 Sum_probs=24.6
Q ss_pred HHHHhhCC-CCCCCcCHHHHHHHhhHhhHHHHHHhcccccCCCCCCCCCCceehHHHH
Q psy6934 51 NAFHAIAA-SDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFT 107 (113)
Q Consensus 51 ~~f~~~D~-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~~eF~ 107 (113)
+-|..+|. ..+|++|..||.-+-.++-+ ....+.++..+. |.++||.|+.+||.
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap~ip--me~c~~~f~e~c-d~~nd~~ial~ew~ 245 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAPLIP--MEHCTTRFFETC-DLDNDKYIALDEWA 245 (259)
T ss_pred eeeccccCCCccccccccccccccCCccc--HHhhchhhhhcc-cCCCCCceeHHHhh
Confidence 34444444 23566666665544433211 111223333333 44455666666664
No 165
>KOG0869|consensus
Probab=42.04 E-value=36 Score=21.50 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=20.5
Q ss_pred HHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 52 AFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 52 ~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
|=..+-.++..+|+.++|..++.++|
T Consensus 75 AsekC~~EkRKTIngdDllwAm~tLG 100 (168)
T KOG0869|consen 75 ASEKCQREKRKTINGDDLLWAMSTLG 100 (168)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHcC
Confidence 33445567788899999999999988
No 166
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=41.58 E-value=31 Score=18.66 Aligned_cols=14 Identities=14% Similarity=0.302 Sum_probs=7.4
Q ss_pred CCcceeHHHHHHHH
Q psy6934 22 RDGHVSLQEYMAFM 35 (113)
Q Consensus 22 ~~g~i~~~ef~~~~ 35 (113)
..|++.-+||..++
T Consensus 27 ~~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 27 ASGKLRGEEINSLL 40 (75)
T ss_pred HcCcccHHHHHHHH
Confidence 34555555555554
No 167
>COG5562 Phage envelope protein [General function prediction only]
Probab=39.51 E-value=21 Score=21.88 Aligned_cols=17 Identities=12% Similarity=0.479 Sum_probs=13.6
Q ss_pred CCCCCcceeHHHHHHHH
Q psy6934 19 DPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 19 d~~~~g~i~~~ef~~~~ 35 (113)
..+..|..+|+||+..+
T Consensus 82 ~~~qsGqttF~ef~~~l 98 (137)
T COG5562 82 RRHQSGQTTFEEFCSAL 98 (137)
T ss_pred HHHhcCCccHHHHHHHH
Confidence 34567889999999887
No 168
>KOG0113|consensus
Probab=39.21 E-value=26 Score=24.61 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 56 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~ 56 (113)
..+...+...|++.+-.+.=+-|.+++ ...++-..++.+|+..|..|
T Consensus 79 ~~~~~~l~~wdP~~dp~a~gDPy~TLF-v~RLnydT~EskLrreF~~Y 125 (335)
T KOG0113|consen 79 HKLERRLKLWDPNNDPNAIGDPYKTLF-VARLNYDTSESKLRREFEKY 125 (335)
T ss_pred HHHHHHHHhcCCCCCCcccCCccceee-eeeccccccHHHHHHHHHhc
Confidence 346777788899887666668899988 55566788889999999987
No 169
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=37.87 E-value=37 Score=15.16 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=9.5
Q ss_pred CCCcCHHHHHHHhhH
Q psy6934 61 RPYVTKEELYANLTK 75 (113)
Q Consensus 61 ~g~i~~~el~~~l~~ 75 (113)
+|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777776666544
No 170
>PF04239 DUF421: Protein of unknown function (DUF421); InterPro: IPR007353 This family of uncharacterised proteins is known as YDFR family; PDB: 3C6F_D.
Probab=37.09 E-value=15 Score=21.07 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=17.9
Q ss_pred CcCHHHHHHHhhHhhHHHHHHhcccccCCCCCCCCCCceeh
Q psy6934 63 YVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDY 103 (113)
Q Consensus 63 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~~g~I~~ 103 (113)
.|+.++|...|+..|...+.+........+ |.|+.
T Consensus 26 ~it~~dl~~~LR~~gi~~l~dV~~a~lE~~------G~lsv 60 (99)
T PF04239_consen 26 RITEEDLLSALREQGIESLSDVKAAVLEPN------GQLSV 60 (99)
T ss_dssp T--HHHHHHHHHHTT--SGGGEEEEEE-TT------S-EEE
T ss_pred CCCHHHHHHHHHhhCCCCHHHcCEEEECCC------CCEEE
Confidence 577777777777777655555544444555 66654
No 171
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=36.81 E-value=71 Score=17.44 Aligned_cols=46 Identities=11% Similarity=0.317 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCC
Q psy6934 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 59 (113)
Q Consensus 8 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~ 59 (113)
...++.++...- ..|.|+|.+...++ . ....+.+.+..+|..+...
T Consensus 6 ~~~i~~Li~~gK--~~G~lT~~eI~~~L-~---~~~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 6 EEAIKKLIEKGK--KKGYLTYDEINDAL-P---EDDLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHHHH--HHSS-BHHHHHHH--S----S---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh--hcCcCCHHHHHHHc-C---ccCCCHHHHHHHHHHHHHC
Confidence 355666666542 35779999998887 2 2234556666666666433
No 172
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.60 E-value=53 Score=20.45 Aligned_cols=12 Identities=8% Similarity=-0.014 Sum_probs=6.4
Q ss_pred CcCHHHHHHHhh
Q psy6934 63 YVTKEELYANLT 74 (113)
Q Consensus 63 ~i~~~el~~~l~ 74 (113)
.++.-.+...|.
T Consensus 82 a~d~y~fts~l~ 93 (148)
T COG4103 82 AIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 173
>KOG1265|consensus
Probab=36.51 E-value=2.5e+02 Score=23.34 Aligned_cols=66 Identities=12% Similarity=0.257 Sum_probs=50.7
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhcc---------CCcCcHHHHHHHHHhhCCCC----CCCcCHHHHHHHhhH
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKET---------ENVQSSEEIENAFHAIAASD----RPYVTKEELYANLTK 75 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~---------~~~~~~~~~~~~f~~~D~~~----~g~i~~~el~~~l~~ 75 (113)
.+++++|..+..++.-.++.+.++.++ .... .+......++.+.+.|..+. .|.|+.+-|.++|..
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfl-n~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFL-NKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHH-hhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 789999999988877789999999988 4322 12335567888888887765 588999999988854
No 174
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=36.46 E-value=89 Score=18.16 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=7.3
Q ss_pred CcceeHHHHHHHH
Q psy6934 23 DGHVSLQEYMAFM 35 (113)
Q Consensus 23 ~g~i~~~ef~~~~ 35 (113)
+|.+....|-..+
T Consensus 42 dG~L~rs~Fg~CI 54 (100)
T PF08414_consen 42 DGLLPRSDFGECI 54 (100)
T ss_dssp TTBEEGGGHHHHH
T ss_pred CCcccHHHHHHhc
Confidence 4555555555554
No 175
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=35.06 E-value=1.2e+02 Score=19.39 Aligned_cols=7 Identities=14% Similarity=0.909 Sum_probs=2.5
Q ss_pred eeHHHHH
Q psy6934 26 VSLQEYM 32 (113)
Q Consensus 26 i~~~ef~ 32 (113)
+++++|+
T Consensus 150 mt~~~Fi 156 (185)
T cd00171 150 MTLEDFI 156 (185)
T ss_pred CCHHHHH
Confidence 3333333
No 176
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=35.03 E-value=70 Score=16.55 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=21.2
Q ss_pred cCcHHHHHHHHHhh--CCCCCCCcCHHHHHHHhhHh
Q psy6934 43 VQSSEEIENAFHAI--AASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 43 ~~~~~~~~~~f~~~--D~~~~g~i~~~el~~~l~~~ 76 (113)
..+-+.+...++.| ++ +...++.++|+.+|...
T Consensus 11 sl~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 35667788888888 44 34568899999888664
No 177
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=33.58 E-value=1.3e+02 Score=19.02 Aligned_cols=45 Identities=4% Similarity=0.207 Sum_probs=23.2
Q ss_pred CCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 21 NRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 21 ~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
+.+|.|++..|..++ ...+. .|.. ..| -.+..+++.++++.++..
T Consensus 95 ~~n~~i~~~~ff~~l-Q~~lG------dWIT--~~~-Lkh~n~MSk~Qik~L~~~ 139 (175)
T PF04876_consen 95 STNGLIDIGKFFDIL-QPKLG------DWIT--KNF-LKHPNRMSKDQIKTLCEQ 139 (175)
T ss_pred CcccceeHHHHHHHH-HHHhh------hHHH--HHH-HhccchhhHHHHHHHHHH
Confidence 345668888888777 32211 2211 112 234556666666665543
No 178
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=32.92 E-value=1.9e+02 Score=21.96 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=38.8
Q ss_pred ceeHHHHHHHHhhhccCCcCcH-HHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 25 HVSLQEYMAFMISKETENVQSS-EEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 25 ~i~~~ef~~~~~~~~~~~~~~~-~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
+.+..||-.++-++.+.-.++. .-+.-+|+..|.++=--|+..+|+.+|.-.
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 3678888777745555544444 456779999999988889999999988544
No 179
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=29.56 E-value=77 Score=19.78 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 48 EIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 48 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.+..-....|..+.++||..+|+.++-..
T Consensus 70 ~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 70 QLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 34445666788888899999999987544
No 180
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=29.32 E-value=62 Score=19.97 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=6.7
Q ss_pred cCHHHHHHHhhHh
Q psy6934 64 VTKEELYANLTKE 76 (113)
Q Consensus 64 i~~~el~~~l~~~ 76 (113)
||.+|++++.+..
T Consensus 10 vTldevr~Av~~f 22 (140)
T PF13075_consen 10 VTLDEVRRAVHQF 22 (140)
T ss_pred ccHHHHHHHHHHH
Confidence 4555555555443
No 181
>KOG2301|consensus
Probab=29.31 E-value=53 Score=28.50 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 44 QSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 44 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
..-+...+++..||++.+|+|...++..+++.+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 3446788999999999999999999999887654
No 182
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=28.82 E-value=48 Score=15.73 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=13.4
Q ss_pred CCCCCCCcCHHHHHHHhhH
Q psy6934 57 AASDRPYVTKEELYANLTK 75 (113)
Q Consensus 57 D~~~~g~i~~~el~~~l~~ 75 (113)
+....|.++.++|+.++.+
T Consensus 7 ~g~~~GP~s~~el~~l~~~ 25 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISS 25 (45)
T ss_pred CCeEECCcCHHHHHHHHHc
Confidence 3445688888888877654
No 183
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.43 E-value=1.7e+02 Score=19.06 Aligned_cols=23 Identities=4% Similarity=0.005 Sum_probs=15.7
Q ss_pred HHHhhCCCCCCCcCHHHHHHHhh
Q psy6934 52 AFHAIAASDRPYVTKEELYANLT 74 (113)
Q Consensus 52 ~f~~~D~~~~g~i~~~el~~~l~ 74 (113)
+-+.|.+|+.|.|+...+..+.+
T Consensus 124 V~~af~~dk~G~l~~~rIl~Lrr 146 (195)
T PF11363_consen 124 VNRAFQVDKEGNLNTSRILGLRR 146 (195)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHh
Confidence 44566677888888887666553
No 184
>PF14164 YqzH: YqzH-like protein
Probab=26.43 E-value=1.1e+02 Score=16.20 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=23.4
Q ss_pred HHHHHHHhhCCC-CCCCcCHHHHHHHhhHhh
Q psy6934 48 EIENAFHAIAAS-DRPYVTKEELYANLTKEM 77 (113)
Q Consensus 48 ~~~~~f~~~D~~-~~g~i~~~el~~~l~~~~ 77 (113)
-++.+|+.|-.+ ..-.++..|++.+.....
T Consensus 9 mi~~~l~QYg~d~~~~pls~~E~~~L~~~i~ 39 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDEEWEELCKHIQ 39 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHHHHHHHHHHHH
Confidence 567889999777 567899999888776543
No 185
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=26.09 E-value=55 Score=18.11 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=9.4
Q ss_pred CCCceehHHHHH
Q psy6934 97 IPGALDYIEFTR 108 (113)
Q Consensus 97 ~~g~I~~~eF~~ 108 (113)
.++.|+|+||+.
T Consensus 32 APmSIS~eeY~~ 43 (81)
T PF10891_consen 32 APMSISFEEYIR 43 (81)
T ss_pred cccEeeHHHHHH
Confidence 348999999964
No 186
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=25.60 E-value=88 Score=20.50 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=19.2
Q ss_pred HHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 53 FHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 53 f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
..-+|.+++|.++.+|+..+....
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 346899999999999998876543
No 187
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=25.48 E-value=1.9e+02 Score=18.50 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.4
Q ss_pred cCHHHHHHH
Q psy6934 64 VTKEELYAN 72 (113)
Q Consensus 64 i~~~el~~~ 72 (113)
+|.++|.+.
T Consensus 152 mt~~~Fi~~ 160 (187)
T smart00222 152 MTLEDFIKN 160 (187)
T ss_pred CCHHHHHHH
Confidence 333333333
No 188
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=25.46 E-value=85 Score=19.97 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=23.6
Q ss_pred CcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHhh
Q psy6934 42 NVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEM 77 (113)
Q Consensus 42 ~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~ 77 (113)
......+++++|+.--+.+....+.=-|..++.++.
T Consensus 31 ~~tdT~~Lr~aFr~pPkS~Gk~Fs~~~Lf~LI~k~~ 66 (175)
T PF09441_consen 31 LDTDTSELREAFRSPPKSDGKSFSTFTLFELIRKLE 66 (175)
T ss_pred CCCCHHHHHHHhcCCCCcCCccchHHHHHHHHHHHh
Confidence 345567899999987666555566655666665544
No 189
>KOG4629|consensus
Probab=25.29 E-value=2.2e+02 Score=22.78 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhH
Q psy6934 11 FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTK 75 (113)
Q Consensus 11 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 75 (113)
...+|+..-+.+.-.+..+.|..++ ..++.+.+|..|+...+..|+.+.|+.....
T Consensus 406 A~~iF~nv~~p~~~~i~ld~~~~f~---------~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 406 ARKIFKNVAKPGVILIDLDDLLRFM---------GDEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHhccCCCCccchhhhhhhhcC---------CHHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 3456666555555556666666665 2457778888887766666999988876643
No 190
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=24.72 E-value=19 Score=16.15 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=10.4
Q ss_pred CCCCChHHHHHHHHhhC
Q psy6934 3 EEGQPDPEFEAILDLVD 19 (113)
Q Consensus 3 ~~~~~~~~~~~~~~~~d 19 (113)
+.|++.+++...+...+
T Consensus 10 ~mGf~~~~a~~aL~~~~ 26 (37)
T smart00165 10 EMGFSREEALKALRAAN 26 (37)
T ss_pred HcCCCHHHHHHHHHHhC
Confidence 45677776666665543
No 191
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=24.30 E-value=96 Score=18.36 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=24.4
Q ss_pred hCCCCCCCcCHHHHHHHhhHhh--HHHHHHhccccc
Q psy6934 56 IAASDRPYVTKEELYANLTKEM--ADYCVERMKPYV 89 (113)
Q Consensus 56 ~D~~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~ 89 (113)
|+++.+.-++.++|.+++.+.| .....+.+..+.
T Consensus 57 F~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fv 92 (125)
T PF06744_consen 57 FDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFV 92 (125)
T ss_pred CCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 4777788899999999998877 444444544443
No 192
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=23.88 E-value=1.2e+02 Score=17.89 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=5.0
Q ss_pred CcceeHHHHHHH
Q psy6934 23 DGHVSLQEYMAF 34 (113)
Q Consensus 23 ~g~i~~~ef~~~ 34 (113)
||.|+-+|-..+
T Consensus 37 DG~v~~~E~~~i 48 (140)
T PF05099_consen 37 DGEVDPEEIEAI 48 (140)
T ss_dssp TSS--CHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 455666664433
No 193
>cd08814 DED_Caspase_10_repeat2 Death Effector Domain, repeat 2, of Caspase-10. Death effector domain (DED) found in Caspase-10, repeat 2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-10 is an initiator of death receptor mediated apoptosis. Together with FADD, caspase-8 and the pseudo-caspase c-FLIP, it forms the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. It contains two N-terminal DED domains and a C-terminal caspase domain. DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other m
Probab=23.84 E-value=1.4e+02 Score=16.44 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=7.6
Q ss_pred CCCCChHHHHHHHH
Q psy6934 3 EEGQPDPEFEAILD 16 (113)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (113)
++++|.+++..+--
T Consensus 12 Se~lt~edL~~lKF 25 (79)
T cd08814 12 SENITSEDLKDIIF 25 (79)
T ss_pred HhhcCHHHHHHHHH
Confidence 45566666655543
No 194
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=23.84 E-value=2.4e+02 Score=19.02 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=22.1
Q ss_pred CChHHHHHHHHhhC---CCCCcceeHHHHHHHH
Q psy6934 6 QPDPEFEAILDLVD---PNRDGHVSLQEYMAFM 35 (113)
Q Consensus 6 ~~~~~~~~~~~~~d---~~~~g~i~~~ef~~~~ 35 (113)
+|...+..||...+ ..+.+.-+|+.|+...
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa 33 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAA 33 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHH
Confidence 36677888887653 2356789999999887
No 195
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=22.81 E-value=2.2e+02 Score=18.92 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=6.5
Q ss_pred CcceeHHHHHHHH
Q psy6934 23 DGHVSLQEYMAFM 35 (113)
Q Consensus 23 ~g~i~~~ef~~~~ 35 (113)
.|.|+-++|..++
T Consensus 39 ~G~Id~~e~kkav 51 (215)
T PF09873_consen 39 PGKIDVEEFKKAV 51 (215)
T ss_pred CCcccHHHHHHHH
Confidence 4455555555544
No 196
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=22.54 E-value=23 Score=15.97 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=10.3
Q ss_pred CCCCChHHHHHHHHhhC
Q psy6934 3 EEGQPDPEFEAILDLVD 19 (113)
Q Consensus 3 ~~~~~~~~~~~~~~~~d 19 (113)
+.|++.+++...+...+
T Consensus 10 ~mGf~~~~~~~AL~~~~ 26 (38)
T cd00194 10 EMGFSREEARKALRATN 26 (38)
T ss_pred HcCCCHHHHHHHHHHhC
Confidence 45666666666665554
No 197
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=21.93 E-value=1.1e+02 Score=14.51 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=4.8
Q ss_pred CCcCHHHHHHH
Q psy6934 62 PYVTKEELYAN 72 (113)
Q Consensus 62 g~i~~~el~~~ 72 (113)
+.++..++...
T Consensus 17 ~~~~~~~v~~~ 27 (47)
T PF02671_consen 17 GRISRSEVIEE 27 (47)
T ss_dssp TCSCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 34444444433
No 198
>KOG0998|consensus
Probab=21.84 E-value=81 Score=25.51 Aligned_cols=64 Identities=22% Similarity=0.436 Sum_probs=49.4
Q ss_pred HHHHHHHHhhCCCCCcceeHHHHHHHHhhhccCCcCcHHHHHHHHHhhCCCCCCCcCHHHHHHHhhHh
Q psy6934 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKE 76 (113)
Q Consensus 9 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~ 76 (113)
.....+|+.+|+.++|.|+-.+=..++ . ........+-.++..-|..+.|++...++...++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~-~---~s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFL-S---KSGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLV 74 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhh-h---ccccchhhhhccccccccccCCccccccccccchHh
Confidence 566788888999999999988877665 2 345666677778888888888999888887776554
No 199
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=20.54 E-value=1.4e+02 Score=15.33 Aligned_cols=28 Identities=7% Similarity=0.201 Sum_probs=18.0
Q ss_pred CCCChHHHHHHHHhhCCCCCcceeHHHHHHHH
Q psy6934 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 35 (113)
...|++++.+++...+ +.++..+...++
T Consensus 8 ~~lTeEEl~~~i~~L~----~~~~~~dm~~IW 35 (61)
T TIGR01639 8 KKLSKEELNELINSLD----EIPNRNDMLIIW 35 (61)
T ss_pred HHccHHHHHHHHHhhc----CCCCHHHHHHHH
Confidence 4567777777777654 346666766554
No 200
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=20.04 E-value=2.7e+02 Score=18.30 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=5.6
Q ss_pred CCCcCHHHHHHHh
Q psy6934 61 RPYVTKEELYANL 73 (113)
Q Consensus 61 ~g~i~~~el~~~l 73 (113)
...|+++++.+++
T Consensus 130 ~~lISp~Di~~A~ 142 (223)
T PF04157_consen 130 SELISPEDILRAC 142 (223)
T ss_dssp SST--HHHHHHHH
T ss_pred CCCcCHHHHHHHH
Confidence 3455555555554
Done!