RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6934
(113 letters)
>gnl|CDD|219990 pfam08726, efhand_Ca_insen, Ca2+ insensitive EF hand. EF hands are
helix-loop-helix binding motifs involved in the
regulation of many cellular processes. EF hands usually
bind to Ca2+ ions which causes a major conformational
change that allows the protein to interact with its
designated targets. This domain corresponds to an EF
hand which has partially or entirely lost its
calcium-binding properties. The calcium insensitive EF
hand is still able to mediate protein-protein
recognition.
Length = 69
Score = 93.5 bits (233), Expect = 9e-27
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 42 NVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGAL 101
+ ++E++E +F A+A +PYVT+E+L LT E A+YC+ RM PY P R +PGA
Sbjct: 1 DTDTAEQVEQSFRALA-EGKPYVTEEDLRRALTPEQAEYCIARMPPYSGPDG-RSVPGAY 58
Query: 102 DYIEFTRTLFQ 112
DYI F LF
Sbjct: 59 DYISFMEALFG 69
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse
superfamily of calcium sensors and calcium signal
modulators; most examples in this alignment model have
2 active canonical EF hands. Ca2+ binding induces a
conformational change in the EF-hand motif, leading to
the activation or inactivation of target proteins.
EF-hands tend to occur in pairs or higher copy numbers.
Length = 63
Score = 33.7 bits (78), Expect = 0.002
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
EG + E + ++ VD + DG + +E++ M
Sbjct: 30 GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62
Score = 31.0 bits (71), Expect = 0.020
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 56
E L D + DG +S E A + K S EEI+ +
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAAL--KSLGEGLSEEEIDEMIREV 45
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 32.0 bits (73), Expect = 0.009
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ + + EA + +D + DG +S +E++ M
Sbjct: 29 DEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 25.0 bits (55), Expect = 3.6
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 16 DLVDPNRDGHVSLQEYMAFMISKETENV--QSSEEIENAFHAIAASDRPYVTKEELYA 71
L+D + DG++ ++E + + + + E IE F+ I ++ EE
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLE 58
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 30.8 bits (71), Expect = 0.012
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISK 38
E + L D + DG + +E+ + +
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not
undergo calcium dependent conformational changes.
Length = 29
Score = 30.1 bits (69), Expect = 0.022
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFM 35
E + D + DG +S +E+ +
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELL 26
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 32.5 bits (74), Expect = 0.027
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 14 ILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYANL 73
IL +VD + DG +S E+ + K N+ ++ + E F A + VT +EL A L
Sbjct: 184 ILAIVDYDEDGQLSFSEFSDLI--KAFGNLVAANKKEELFKAADLNGDGVVTIDELAALL 241
Query: 74 TKE 76
+
Sbjct: 242 ALQ 244
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 29.9 bits (69), Expect = 0.027
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 11 FEAILDLVDPNRDGHVSLQEYMAFM 35
+ + D N DG +S +E +
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 31.1 bits (71), Expect = 0.069
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETE 41
+ E D E E +L D + DG + +E+ + T
Sbjct: 120 SLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSPTI 160
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 29.4 bits (67), Expect = 0.076
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISK 38
E + + D + DG +S +E+ +
Sbjct: 25 EVDILFREFDTDGDGKISFEEFCVLLQRL 53
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 29.7 bits (67), Expect = 0.18
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL 69
E + +++ VD + +G + E++ M K + S EEI+ AF +++ EL
Sbjct: 48 ELQDMINEVDADGNGTIDFPEFLTLMARKMKDT-DSEEEIKEAFKVFDRDGNGFISAAEL 106
Query: 70 ---YANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQN 113
NL +++ D V+ M D + G ++Y EF + +
Sbjct: 107 RHVMTNLGEKLTDEEVDEMIREADVDGD----GQINYEEFVKMMMSK 149
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated
in endocytosis, vesicle transport, and signal
transduction. The alignment contains a pair of EF-hand
motifs, typically one of them is canonical and binds to
Ca2+, while the other may not bind to Ca2+. A
hydrophobic binding pocket is formed by residues from
both EF-hand motifs. The EH domain binds to proteins
containing NPF (class I), [WF]W or SWG (class II), or
H[TS]F (class III) sequence motifs.
Length = 67
Score = 28.3 bits (64), Expect = 0.20
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 7 PDPEFEAILDLVDPNRDGHVSLQEY 31
P I DL D ++DG + +E+
Sbjct: 31 PRSVLAQIWDLADTDKDGKLDKEEF 55
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 27.8 bits (62), Expect = 1.3
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 70 YANLTKEM-ADYCVERMKPYVDPKTE--------RGIPGALDYIEFT 107
Y++ + + +E+ + +DP T R G LDYI +T
Sbjct: 512 YSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYT 558
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 25.6 bits (57), Expect = 1.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFM 35
E L D + DG++S +E +
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKAL 26
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100
hierarchy contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
are expressed exclusively in vertebrates, and are
implicated in intracellular and extracellular
regulatory activities. Intracellularly, S100 proteins
act as Ca-signaling or Ca-buffering proteins. The most
unusual characteristic of certain S100 proteins is
their occurrence in extracellular space, where they act
in a cytokine-like manner through RAGE, the receptor
for advanced glycation products. Structural data
suggest that many S100 members exist within cells as
homo- or heterodimers and even oligomers;
oligomerization contributes to their functional
diversification. Upon binding calcium, most S100
proteins change conformation to a more open structure
exposing a hydrophobic cleft. This hydrophobic surface
represents the interaction site of S100 proteins with
their target proteins. There is experimental evidence
showing that many S100 proteins have multiple binding
partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such
as S100A1,-3,-4,-6,-7,-10,-11,and -13), this group
includes the ''fused'' gene family, a group of calcium
binding S100-related proteins. The ''fused'' gene
family includes multifunctional epidermal
differentiation proteins - profilaggrin, trichohyalin,
repetin, hornerin, and cornulin; functionally these
proteins are associated with keratin intermediate
filaments and partially crosslinked to the cell
envelope. These ''fused'' gene proteins contain
N-terminal sequence with two Ca-binding EF-hands motif,
which may be associated with calcium signaling in
epidermal cells and autoprocessing in a
calcium-dependent manner. In contrast to S100 proteins,
"fused" gene family proteins contain an extraordinary
high number of almost perfect peptide repeats with
regular array of polar and charged residues similar to
many known cell envelope proteins.
Length = 88
Score = 26.3 bits (59), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 4 EGQPDPE-FEAILDLVDPNRDGHVSLQEYMAFMIS 37
+ Q DPE + I+ +D N+DG V QE++ +
Sbjct: 45 KNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79
>gnl|CDD|240155 cd05029, S-100A6, S-100A6: S-100A6 domain found in proteins
similar to S100A6. S100A6 is a member of the S100
domain family within EF-hand Ca2+-binding proteins
superfamily. Note that the S-100 hierarchy, to which
this S-100A6 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins exhibit unique patterns of tissue- and
cell type-specific expression and have been implicated
in the Ca2+-dependent regulation of diverse
physiological processes, including cell cycle
regulation, differentiation, growth, and metabolic
control . S100A6 is normally expressed in the G1 phase
of the cell cycle in neuronal cells. The function of
S100A6 remains unclear, but evidence suggests that it
is involved in cell cycle regulation and exocytosis.
S100A6 may also be involved in tumorigenesis; the
protein is overexpressed in several tumors. Ca2+
binding to S100A6 leads to a conformational change in
the protein, which exposes a hydrophobic surface for
interaction with target proteins. Several such proteins
have been identified: glyceraldehyde-3-phosphate
dehydrogenase , annexins 2, 6 and 11 and
Calcyclin-Binding Protein (CacyBP).
Length = 88
Score = 26.3 bits (58), Expect = 2.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D E +++ +D N+D V+ QEY+ F+
Sbjct: 50 DAEIAKLMEDLDRNKDQEVNFQEYVTFL 77
>gnl|CDD|240150 cd05023, S-100A11, S-100A11: S-100A11 domain found in proteins
similar to S100A11. S100A11 is a member of the S-100
domain family within EF-hand Ca2+-binding proteins
superfamily. Note that the S-100 hierarchy, to which
this S-100A11 group belongs, contains only S-100
EF-hand domains, other EF-hands have been modeled
separately. S100 proteins exhibit unique patterns of
tissue- and cell type-specific expression and have been
implicated in the Ca2+-dependent regulation of diverse
physiological processes, including cell cycle
regulation, differentiation, growth, and metabolic
control . S100 proteins have also been associated with
a variety of pathological events, including neoplastic
transformation and neurodegenerative diseases such as
Alzheimer's, usually via over expression of the
protein. S100A11 is expressed in smooth muscle and
other tissues and involves in calcium-dependent
membrane aggregation, which is important for cell
vesiculation . As is the case for many other S100
proteins, S100A11 is homodimer, which is able to form a
heterodimer with S100B through subunit exchange. Ca2+
binding to S100A11 results in a conformational change
in the protein, exposing a hydrophobic surface that
interacts with target proteins. In addition to binding
to annexin A1 and A6 S100A11 also interacts with actin
and transglutaminase.
Length = 89
Score = 24.7 bits (54), Expect = 6.4
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 4 EGQPDPE-FEAILDLVDPNRDGHVSLQEYM 32
+ Q DP + ++ +D N DG + QE++
Sbjct: 46 KNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75
>gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional.
Length = 380
Score = 25.6 bits (57), Expect = 6.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 1 MVEEGQPDPEFEAILDLVDP 20
MV G P P E IL+L+ P
Sbjct: 185 MVHIGNPPPSLEEILELLRP 204
>gnl|CDD|181601 PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit;
Reviewed.
Length = 548
Score = 25.6 bits (57), Expect = 6.6
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRP 62
G+P P LVD +D ++ E + + E E + E+E A +A + +P
Sbjct: 146 SSGRPGPV------LVDIPKDIQLAEGELEPHLTTVENEPAFPAAELEQARALLAQAKKP 199
Query: 63 --YV 64
YV
Sbjct: 200 VLYV 203
>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family,
BZL_OCoD_HPCL subfamily, TPP-binding module; composed of
proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA
decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase
(2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves
the acyloin linkage of benzoin producing 2 molecules of
benzaldehyde and enabling the Pseudomonas to grow on
benzoin as the sole carbon and energy source. OCoD has a
role in the detoxification of oxalate, catalyzing the
decarboxylation of oxalyl-CoA to formate. 2-HPCL is a
peroxisomal enzyme which plays a role in the
alpha-oxidation of 3-methyl-branched fatty acids,
catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA
into formyl-CoA and a 2-methyl-branched fatty aldehyde.
All these enzymes depend on Mg2+ and TPP for activity.
Length = 172
Score = 25.6 bits (57), Expect = 6.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 41 ENVQSSEEIENAFHAIAASDRPYV 64
E V + EE++ A AS +P +
Sbjct: 143 ELVTTPEELKPALKRALASGKPAL 166
>gnl|CDD|176723 cd08307, Death_Pelle, Death domain of the protein kinase Pelle.
Death domain (DD) of the protein kinase Pelle from
Drosophila melanogaster and simlar proteins. In
Drosophila, interaction between the DDs of Tube and
Pelle is an important component of the Toll pathway,
which functions in establishing dorsoventral polarity
in embryos and in mediating innate immune responses to
pathogens. Tube and Pelle transmit the signal from the
Toll receptor to the Dorsal/Cactus complex. Pelle also
functions in photoreceptor axon targeting. DDs are
protein-protein interaction domains found in a variety
of domain architectures. Their common feature is that
they form homodimers by self-association or
heterodimers by associating with other members of the
DD superfamily including CARD (Caspase activation and
recruitment domain), DED (Death Effector Domain), and
PYRIN. They serve as adaptors in signaling pathways and
can recruit other proteins into signaling complexes.
Length = 97
Score = 25.0 bits (55), Expect = 7.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 65 TKEELYANLTKEMADYCVERMKPYVDPK 92
T EL+ L +E + +K VDPK
Sbjct: 66 TITELFVLLYREKLFRAMRIIKDLVDPK 93
>gnl|CDD|226050 COG3519, COG3519, Type VI protein secretion system component VasA
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 621
Score = 25.4 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAF 34
EA+L G+ LQEY AF
Sbjct: 244 EALLPYPKNVFPGYRLLQEYFAF 266
>gnl|CDD|185352 PRK15455, PRK15455, PrkA family serine protein kinase; Provisional.
Length = 644
Score = 25.3 bits (56), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 5 GQPDPEFEAILDLVDPNRDGHVSLQEY 31
G+ P E+ L L DP+ DG + +EY
Sbjct: 139 GERSPVNESPLGLFDPDEDGPILEEEY 165
>gnl|CDD|220509 pfam09994, DUF2235, Uncharacterized conserved protein (DUF2235).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 264
Score = 25.0 bits (55), Expect = 9.7
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 33 AFMISKETENVQSSEEIENAFHAIAASDR 61
+ E + S +E+A HA+A +R
Sbjct: 182 LWRWRHEFPDTTLSPNVEHARHAVALDER 210
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,931,260
Number of extensions: 493649
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 47
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (23.9 bits)