RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6934
(113 letters)
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 110 bits (276), Expect = 9e-30
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 5/107 (4%)
Query: 7 PDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTK 66
+ EF I+ +VDPNR G V+ Q ++ FM S+ET + +++++ +F +A D+ Y+T
Sbjct: 759 GEAEFARIMSIVDPNRMGVVTFQAFIDFM-SRETADTDTADQVMASFKILAG-DKNYITV 816
Query: 67 EELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQN 113
+EL L + A+YC+ RM PY +PGALDY+ F+ L+
Sbjct: 817 DELRRELPPDQAEYCIARMAPYNGR---DAVPGALDYMSFSTALYGE 860
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural
protein, Z-DISK structural complex; NMR {Homo sapiens}
SCOP: a.39.1.7
Length = 75
Score = 86.0 bits (213), Expect = 7e-24
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 40 TENVQSSEEIENAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPG 99
+ ++E++ +F +A+ D+PY+ EEL L + A YC++RM Y P +PG
Sbjct: 3 MADTDTAEQVIASFRILAS-DKPYILAEELRRELPPDQAQYCIKRMPAYSGP---GSVPG 58
Query: 100 ALDYIEFTRTLF 111
ALDY F+ L+
Sbjct: 59 ALDYAAFSSALY 70
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 42.7 bits (101), Expect = 4e-06
Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASD 60
+ G + IL +D N G+++ E+MA + S ++ AF+ I +
Sbjct: 65 LASVGIKKWDINRILQALDINDRGNITYTEFMAGCYRWKNI---ESTFLKAAFNKIDKDE 121
Query: 61 RPYVTKEELYANLTKE-MADYCVERMKPYVDP----KTERGIPGALDYIEFTR 108
Y++K ++ + + + + + ++ V I + + EF
Sbjct: 122 DGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKD 174
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 41.6 bits (98), Expect = 1e-05
Identities = 21/109 (19%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRP 62
+ Q + E +AIL D +R+G++ E++ + + +++ S +++E+AF
Sbjct: 384 DLPQIESEVDAILGAADFDRNGYIDYSEFVTVAMDR--KSLLSKDKLESAFQKFDQDGNG 441
Query: 63 YVTKEELYANLTKE-MADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110
++ +EL + + + + M +D + G +D+ EF + +
Sbjct: 442 KISVDELASVFGLDHLESKTWKEMISGIDSNND----GDVDFEEFCKMI 486
Score = 34.3 bits (79), Expect = 0.004
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ ++ ++ +D N DG V +E+ +
Sbjct: 452 FGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMI 486
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 41.6 bits (98), Expect = 1e-05
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASD 60
+ E + E + IL VD +++G++ E+++ + K + + S E + AF+
Sbjct: 391 LGELKNVEEEVDNILKEVDFDKNGYIEYSEFISVCMDK--QILFSEERLRRAFNLFDTDK 448
Query: 61 RPYVTKEELYANLTKE-MADYCVERMKPYVDPKTERGIPGALDYIEFTR 108
+TKEEL +++ + D + +D+ EF
Sbjct: 449 SGKITKEELANLFGLTSISEKTWNDVLGEADQNKD----NMIDFDEFVS 493
Score = 35.1 bits (81), Expect = 0.002
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ + +L D N+D + E+++ M
Sbjct: 461 FGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMM 495
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 41.6 bits (98), Expect = 1e-05
Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRP 62
E + + ++++ L+D + G + E++A I + + S E +E AF
Sbjct: 375 EGSTIEDQIDSLMPLLDMDGSGSIEYSEFIASAIDR--TILLSRERMERAFKMFDKDGSG 432
Query: 63 YVTKEELYANLTKEMADYCVERMKPY---VDPKTERGIPGALDYIEFTR 108
++ +EL+ ++ + +E ++ VD + G +D+ EF
Sbjct: 433 KISTKELFKLFSQADSSIQMEELESIIEQVDNNKD----GEVDFNEFVE 477
Score = 31.6 bits (72), Expect = 0.043
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ E E+I++ VD N+DG V E++ +
Sbjct: 447 DSSIQMEELESIIEQVDNNKDGEVDFNEFVEML 479
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 40.4 bits (95), Expect = 3e-05
Identities = 20/108 (18%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDR 61
++ + E + +LD VD +++G++ E++ + + + + S E +E AF + +
Sbjct: 375 LDASAVEHEVDQVLDAVDFDKNGYIEYSEFVTVAMDR--KTLLSRERLERAFRMFDSDNS 432
Query: 62 PYVTKEELYANL-TKEMADYCVERMKPYVDPKTERGIPGALDYIEFTR 108
++ EL ++ + + VD + G +D+ EF +
Sbjct: 433 GKISSTELATIFGVSDVDSETWKSVLSEVDKNND----GEVDFDEFQQ 476
Score = 34.3 bits (79), Expect = 0.004
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETEN 42
++++L VD N DG V E+ ++ K N
Sbjct: 444 FGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLL-KLCGN 484
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 38.7 bits (91), Expect = 1e-04
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAA 58
+ G D + ++ +D + DG + E+ A M ++ + + A
Sbjct: 108 CKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDA 165
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 38.1 bits (89), Expect = 1e-04
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKE 67
+P +++L ++ + M K + E+ F +A +R +T E
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVE-EFVSELCKGFSLLADPERHLITAE 60
Query: 68 ELYANLTK 75
L N
Sbjct: 61 SLRRNSGI 68
Score = 28.8 bits (65), Expect = 0.23
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEE 48
EG + + ++ D + DG ++ E+ M+ E ++ +E
Sbjct: 71 IEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAET 116
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 37.5 bits (87), Expect = 3e-04
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 1 MVEEGQPDP-EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 59
V G +A+ D + V EY+ + + +
Sbjct: 214 FVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCL--------LVLRILYAFADFD 265
Query: 60 DRPYVTKEEL 69
++KEE+
Sbjct: 266 KSGQLSKEEV 275
Score = 31.7 bits (72), Expect = 0.034
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETEN 42
+FE +VD + +S QE++ ++ ++
Sbjct: 285 PESARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMFHDD 323
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 37.2 bits (86), Expect = 4e-04
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQ------SSEEIENAFHA 55
V++ + + +L L D N DG + L E + +E ++ +E AF
Sbjct: 140 VDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFEL 199
Query: 56 IAASDRPYVTKEELYANLT----KEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTL 110
Y+ + EL A L K + + + Y G L + L
Sbjct: 200 YDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALIL 258
Score = 32.2 bits (73), Expect = 0.024
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 14/122 (11%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM-------ISKETENVQSSEEIENAFHA 55
+ PE + +D DG + + E + + + ++S EE +
Sbjct: 52 AGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRK 111
Query: 56 IAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIP-------GALDYIEFTR 108
++ EEL L + + T+ + G L+ E R
Sbjct: 112 YDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMAR 171
Query: 109 TL 110
L
Sbjct: 172 LL 173
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISK--ETENVQSSEEIENAF 53
D E + ++ D + DG V+ +E++ M +K E I N
Sbjct: 119 DEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKI 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 7e-04
Identities = 29/165 (17%), Positives = 47/165 (28%), Gaps = 67/165 (40%)
Query: 3 EEGQPDPEFEAILDL-----------VDPNRDGH------VSLQE----YM--------- 32
E D E +L V+P++ G + L E Y+
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 33 -AFMISKETENVQSSEEIENAFHAIAASDRPYVTKEE-------------LYA------N 72
+ +T V++ E I+N A + RP+ K L A N
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 73 LT---KEMAD-YCVERMKPYVDPKTERGIPGALDYIEFTRTLFQN 113
+E+ D Y + V D I+F+
Sbjct: 166 TDDYFEELRDLY--QTYHVLVG-----------DLIKFSAETLSE 197
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 34.1 bits (79), Expect = 0.001
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSS-EEIENAFHA 55
E D E E ++ D + DG V+ +E++ M++ + + F +
Sbjct: 40 EKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVRGGGGGNGWSRLRRKFSS 92
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 33.9 bits (78), Expect = 0.002
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ P E I +L D ++DG ++L E+ A
Sbjct: 35 FTKSKLPILELSHIWELSDFDKDGALTLDEFCAAF 69
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 34.0 bits (78), Expect = 0.002
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+++ P + +I +L D ++DG ++ +E++ M
Sbjct: 40 LMQSSLPQAQLASIWNLSDIDQDGKLTAEEFILAM 74
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 33.4 bits (76), Expect = 0.004
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFMISKE 39
E ++ VD N+D V+L+E++A KE
Sbjct: 75 EHVMKNVDTNQDRLVTLEEFLASTQRKE 102
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 33.1 bits (76), Expect = 0.005
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
++ G P I L D G +S ++
Sbjct: 36 FLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAF 70
Score = 23.9 bits (52), Expect = 9.9
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFM 35
+++ I D + DG VS E
Sbjct: 11 KYDEIFLKTDKDMDGFVSGLEVREIF 36
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 34.0 bits (78), Expect = 0.005
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
+ + + I D+ D R+G + E++ + + E+++ AF +
Sbjct: 69 RNRRNLFADRIFDVFDVKRNGVIEFGEFVR-SLGVFHPSAPVHEKVKFAFKLYDLRQTGF 127
Query: 64 VTKEELY-----------ANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEF 106
+ +EEL L+++M + V++ D K + G +D E+
Sbjct: 128 IEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKND----GKIDIDEW 177
Score = 29.7 bits (67), Expect = 0.13
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 8/51 (15%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH 54
E + + D DG + + E+ F+ + +
Sbjct: 150 EDMIEVMVDKAFVQADRKNDGKIDIDEWKDFV--------SLNPSLIKNMT 192
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 33.9 bits (77), Expect = 0.005
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 17/127 (13%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQ----------SSEEIE 50
+ + D +A++ + D N+DG + L + + +E +Q + E
Sbjct: 140 KIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFE 199
Query: 51 NAFHAIAASDRPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIP-------GALDY 103
F S + E+ + M +D E + G +
Sbjct: 200 KIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQK 259
Query: 104 IEFTRTL 110
E L
Sbjct: 260 SELALCL 266
Score = 32.3 bits (73), Expect = 0.019
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMIS---------KETENVQSSEEIENAFHAIAASD 60
++ + D DG + ++E ++ + + +S E + A
Sbjct: 58 IKKSFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADS 117
Query: 61 RPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIP-------GALDYIEFTRTL 110
Y++ EL L + + +D T+ + G LD + R L
Sbjct: 118 SGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARIL 174
Score = 28.5 bits (63), Expect = 0.42
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 39
+ G D E +L D N+DG + E + K
Sbjct: 233 ISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGLKH 270
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 32.2 bits (74), Expect = 0.006
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 1 MVEEGQPDP-EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 53
+ G E + ++ +D + DG + E+++F + +++ F
Sbjct: 29 LRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNANPGL----MKDVAKVF 78
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 32.8 bits (75), Expect = 0.006
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ PE I +L D + DG ++L E+ A
Sbjct: 48 FTKSKLSIPELSYIWELSDADCDGALTLPEFCAAF 82
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 33.4 bits (77), Expect = 0.006
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D + +L D N DG V +E++ M
Sbjct: 149 FGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMM 183
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 31.8 bits (73), Expect = 0.007
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 56
EA+ +D N DG VS +E AF+ + +++ + ++ F +I
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFV--SKKRAIKNEQLLQLIFKSI 45
Score = 27.1 bits (61), Expect = 0.42
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 7 PDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 37
+ + I +D + +G + E+ F S
Sbjct: 34 NEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 32.9 bits (75), Expect = 0.007
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
G P P I L D N DG + E+ M
Sbjct: 62 GLPQPVLAQIWALADMNNDGRMDQVEFSIAM 92
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 33.2 bits (76), Expect = 0.007
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 9/110 (8%)
Query: 5 GQPDPEFEA--ILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRP 62
+ + D N D + EY+A + ++ +++ F
Sbjct: 53 DNEEATQYVEAMFRAFDTNGDNTIDFLEYVAALNLVLRGTLE--HKLKWTFKIYDKDRNG 110
Query: 63 YVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112
+ ++EL ++ + + K L E +F
Sbjct: 111 CIDRQEL-----LDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFL 155
Score = 28.2 bits (63), Expect = 0.41
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ P+ + I LVD N DG +SL E++
Sbjct: 142 KLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGA 174
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 33.2 bits (76), Expect = 0.007
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYV 64
+ E + + D N+DG++ EY+A + V +++ F +
Sbjct: 48 PSANKYVEQMFETFDFNKDGYIDFMEYVAALSLVLKGKVD--QKLRWYFKLYDVDGNGCI 105
Query: 65 TKEELY 70
+ EL
Sbjct: 106 DRGELL 111
Score = 32.1 bits (73), Expect = 0.020
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKET--ENVQSSEEIENAFHAIAASD 60
E + + D +D N DG +SL+E+M + E + + S ++ + I
Sbjct: 125 EAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTRSLDLTHIVKLIQNDG 184
Query: 61 RPYVTKEEL 69
+ EE
Sbjct: 185 KNPHAPEEA 193
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 33.2 bits (76), Expect = 0.008
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEE-----IENAFHAIAASDRP 62
+ ++ + + D + D ++ +E++ + + + E + A
Sbjct: 54 EALWQGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDG 113
Query: 63 YVTKEELYANLTK 75
VT + LT
Sbjct: 114 AVTVADTARALTA 126
Score = 29.3 bits (66), Expect = 0.18
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ G P+ +D + DG V E +
Sbjct: 124 LTAFGVPEDLARQAAAALDTDGDGKVGETEIVPAF 158
Score = 28.9 bits (65), Expect = 0.25
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 56
P A L + D + DG V++ + + + + A A+
Sbjct: 92 FAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGV----PEDLARQAAAAL 141
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 32.9 bits (76), Expect = 0.009
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E G D E ++ VD + DG + E++A M
Sbjct: 125 CEEFGVEDVRIEELMRDVDQDNDGRIDYNEFVAMM 159
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 32.5 bits (74), Expect = 0.009
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
++ P + +L D + DG + E+ M
Sbjct: 40 LLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAM 74
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 39
+E D +++L VD N DG + E+M M K+
Sbjct: 160 IENPLIDKAIDSLLQEVDLNGDGEIDFHEFMLMMSKKK 197
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 33.0 bits (76), Expect = 0.011
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 1 MVEEGQPDP-EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAAS 59
+ ++G P F+ +LD +D + G + E++A + ++ S + I AF
Sbjct: 78 LEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEFIAAALDRKQL---SKKLIYCAFRVFDVD 134
Query: 60 DRPYVTKEEL 69
+ +T EL
Sbjct: 135 NDGEITTAEL 144
Score = 28.8 bits (65), Expect = 0.30
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ + ++ VD N DG + E+ M
Sbjct: 157 ITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEMM 189
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 32.6 bits (74), Expect = 0.013
Identities = 7/61 (11%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKE 67
+ +D + DG V L+E+ + + + ++ ++ I +
Sbjct: 104 QNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQL----QCADVPAVYNVITDGGKVTFDLN 159
Query: 68 E 68
Sbjct: 160 R 160
Score = 29.5 bits (66), Expect = 0.15
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSE-------EIENAFHAIAASDRP 62
E+ + D N+D VS +EY+A ++ I F + S
Sbjct: 61 EWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDG 120
Query: 63 YVTKEELYANLTK 75
V EE
Sbjct: 121 IVDLEEFQNYCKN 133
Score = 29.5 bits (66), Expect = 0.17
Identities = 3/35 (8%), Positives = 8/35 (22%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ A+ +++ L Y
Sbjct: 131 CKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELY 165
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 32.6 bits (75), Expect = 0.013
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHA--------IAASD 60
P + ++D+ D + +G V +E++ + + +++ AF I+ +
Sbjct: 38 PLVQRVIDIFDTDGNGEVDFKEFIEGVSQFSVKG-DKEQKLRFAFRIYDMDKDGYISNGE 96
Query: 61 RPYVTKEELYANLTKEMADYCVERMKPYVDPKTERGIPGALDYIEFTR 108
V K + NL V++ D + G + + EF
Sbjct: 97 LFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGD----GRISFEEFCA 140
Score = 26.8 bits (60), Expect = 1.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 1 MVEEGQPDPEFEAILDL----VDPNRDGHVSLQEYMAFM 35
MV D + + I+D D + DG +S +E+ A +
Sbjct: 104 MVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 142
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 32.1 bits (73), Expect = 0.013
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEE 48
D +F+ + + + N G + ++++ S+ ++ +
Sbjct: 59 DEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAATPMATGD 99
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 32.2 bits (73), Expect = 0.014
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
P+ I L D ++DG + +E+
Sbjct: 80 KLPNTVLGKIWKLADVDKDGLLDDEEFALAN 110
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 32.1 bits (73), Expect = 0.019
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
M P + D ++ G + E +
Sbjct: 154 MKAFDVPQEAAYTFFEKADTDKSGKLERTELVHLF 188
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 56
E + D++D + DG V + E M + + E F
Sbjct: 122 EPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD----VPQEAAYTFFEKA 171
Score = 25.2 bits (55), Expect = 5.6
Identities = 2/46 (4%), Positives = 9/46 (19%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHA 55
+ ++++ + E + A
Sbjct: 82 AVRVFFLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIA 127
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 30.7 bits (70), Expect = 0.023
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 5 GQPDP-EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 53
G P E ++ +D + DG +S E+ F + +++ F
Sbjct: 41 GSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARANR----GLVKDVSKIF 86
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 31.3 bits (72), Expect = 0.028
Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 7 PDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEE-IENAF 53
+ + I +D + +G + E+ F S + +++ + ++ +
Sbjct: 34 NEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLY 81
Score = 27.9 bits (63), Expect = 0.53
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMI 36
+ + D N DG+++L+E++ F +
Sbjct: 106 IEKVAEQVMKADANGDGYITLEEFLEFSL 134
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 31.5 bits (72), Expect = 0.036
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKET 40
+ F+A++ D R G + +Y+ I
Sbjct: 128 EQTFQALMRKFDRQRRGSLGFDDYVELSIFVCR 160
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 31.3 bits (71), Expect = 0.040
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKET--ENVQSSEEIENAFHAIAASD 60
+ P+ + +D N DG ++L+E++ M + E V S + N I
Sbjct: 129 QTLSPEEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICNGK 188
Query: 61 RP 62
+P
Sbjct: 189 QP 190
Score = 30.9 bits (70), Expect = 0.055
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYV 64
+ + + + + D N+DG V E++A + E ++ ++++ F A +
Sbjct: 53 QKANKHIDQVYNTFDTNKDGFVDFLEFIAAVNLIMQEKME--QKLKWYFKLYDADGNGSI 110
Query: 65 TKEEL 69
K EL
Sbjct: 111 DKNEL 115
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 31.3 bits (71), Expect = 0.040
Identities = 6/65 (9%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 11 FEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSS------EEIENAFHAIAASDRPYV 64
F+ + DG ++ ++++ + E ++S ++ + +
Sbjct: 60 FDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQI 119
Query: 65 TKEEL 69
+E
Sbjct: 120 NADEF 124
Score = 30.1 bits (68), Expect = 0.097
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 56
P + I+ + D N DG ++ E+ A++ + S E AF+ +
Sbjct: 101 GPVVKGIVGMCDKNADGQINADEFAAWLTALGM----SKAEAAEAFNQV 145
Score = 29.3 bits (66), Expect = 0.19
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ G E + VD N +G +SL E + +
Sbjct: 128 LTALGMSKAEAAEAFNQVDTNGNGELSLDELLTAV 162
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 30.8 bits (70), Expect = 0.047
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
G A D +D N DG +SL+E++
Sbjct: 120 FGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
Score = 29.7 bits (67), Expect = 0.14
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAI 56
+ + VD N D ++S EY F +F AI
Sbjct: 88 AKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGL----DKTMAPASFDAI 137
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 31.0 bits (70), Expect = 0.053
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKE 67
+ D+ D + D + EY +S + + AF ++ + VT+E
Sbjct: 108 TKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGI----PKSDCDAAFDTLSDGGKTMVTRE 163
Query: 68 ELYANLTKEMADY 80
+ +Y
Sbjct: 164 I----FARLWTEY 172
Score = 30.6 bits (69), Expect = 0.068
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ G P + +A D + V+ + +
Sbjct: 135 YMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARLW 169
Score = 30.2 bits (68), Expect = 0.083
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 11 FEAILDLVDPNRDGHVSLQEYMAFM--ISKETENVQSSEE-----IENAFHAIAASDRPY 63
++ + D N D V+ +E++ K E +S E + F S
Sbjct: 66 WDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNI 125
Query: 64 VTKEELYANLT 74
+ K E
Sbjct: 126 IDKHEYSTVYM 136
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 30.2 bits (68), Expect = 0.058
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
G PD I DL D + G +S QE+ +
Sbjct: 41 GLPDLILGKIWDLADTDGKGVLSKQEFFVAL 71
Score = 24.8 bits (54), Expect = 4.5
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 9 PEFEAILDLVDPNRDGHVSLQEYMAFMI-SKETENVQSSEEIENAFHAIAASDRPYVTKE 67
P +E V+ G V + AF+ S + + + ++K+
Sbjct: 11 PVYEKYYRQVEAGNTGRVLALDAAAFLKKSG-----LPDLILGKIWDLADTDGKGVLSKQ 65
Query: 68 ELYA 71
E +
Sbjct: 66 EFFV 69
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 30.9 bits (70), Expect = 0.058
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 26/129 (20%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM--------------ISKETENVQSSEEI 49
E +P + I++ + V+ + +M + ++ S ++
Sbjct: 56 ELAINPLGDRIINAFFSEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKL 115
Query: 50 ENAFHAIAASDRPYVTKEELY--------ANLTKEMADYCVERMKPYVDPKTERGIPGAL 101
AF ++++EL N++ E +R D + A+
Sbjct: 116 HFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGD----SAI 171
Query: 102 DYIEFTRTL 110
+ EF + L
Sbjct: 172 SFTEFVKVL 180
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 31.0 bits (70), Expect = 0.060
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISK 38
D E + ++ D + DG V+ +E++ M +K
Sbjct: 420 DEEVDEMIREADIDGDGQVNYEEFVQMMTAK 450
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 29.6 bits (67), Expect = 0.061
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFM 35
+ + +D N DG VS +E+ +
Sbjct: 50 DDLFQELDKNGDGEVSFEEFQVLV 73
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 29.7 bits (67), Expect = 0.063
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+E + + I+ +D RDG V Q + + +
Sbjct: 41 FLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLI 75
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 30.1 bits (69), Expect = 0.072
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISK 38
D E + ++ D + DGH++ +E++ M+SK
Sbjct: 118 DDEVDEMIREADIDGDGHINYEEFVRMMVSK 148
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 30.3 bits (69), Expect = 0.073
Identities = 6/35 (17%), Positives = 19/35 (54%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 38
E D E + +L V+ + +G + ++++ ++ +
Sbjct: 114 EKLTDAEVDELLKGVEVDSNGEIDYKKFIEDVLRQ 148
Score = 24.5 bits (54), Expect = 8.8
Identities = 4/40 (10%), Positives = 11/40 (27%), Gaps = 4/40 (10%)
Query: 18 VDPNRDGHVSLQEYMAFMISK----ETENVQSSEEIENAF 53
++L + + + +E+ AF
Sbjct: 50 SSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFVKAF 89
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 30.6 bits (69), Expect = 0.074
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 38
+ G + A+ +D N G V+ E+ A+ +
Sbjct: 159 LEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASAV 196
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 30.1 bits (68), Expect = 0.086
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D + + +D N++G +S E++ +
Sbjct: 133 PDLTDDKAITCFNTLDFNKNGQISRDEFLVTV 164
Score = 30.1 bits (68), Expect = 0.089
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 53
E+ + + D +D ++DG+VSL E+ AF+ + + ++ F
Sbjct: 96 EKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFL--QAVGPDLTDDKAITCF 144
Score = 29.3 bits (66), Expect = 0.18
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISK-----ETENVQSSEEIENAFHAIAASDRPYV 64
EF + D + +S++E E + + + I YV
Sbjct: 60 EFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYV 119
Query: 65 TKEEL 69
+ E
Sbjct: 120 SLPEF 124
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 29.4 bits (66), Expect = 0.099
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
M+ + + ++ +D N DG +S EY +
Sbjct: 47 MLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLI 81
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 30.2 bits (68), Expect = 0.11
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+E P+ E I +D NRDG +SL+E++
Sbjct: 141 DESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGA 173
Score = 29.4 bits (66), Expect = 0.17
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
G E + D N DG + +E++ + ++ ++++ AF Y
Sbjct: 58 YGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLE--QKLKWAFSMYDLDGNGY 115
Query: 64 VTKEEL 69
++K E+
Sbjct: 116 ISKAEM 121
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 30.1 bits (67), Expect = 0.11
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
MV P+ I L D +RDG + +E+
Sbjct: 483 MVGTKLPNSVLGRIWKLSDVDRDGMLDDEEFALAS 517
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 28.6 bits (64), Expect = 0.16
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ + + F+ ++ +D NRD V QEY F+
Sbjct: 45 FLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.17
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 29/114 (25%)
Query: 13 AILDLVDPNRDGHVSLQEYMAFMISKETENVQSS----------EEIE--NAFHA--IAA 58
+ D + H+SL + + E +++ E+ N IA
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 59 SDRPYVTKEELYANLT----KEMADYCVERMKP------YVD----PKTERGIP 98
S R + + + ++ + + + ++P + P + IP
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IP 388
Score = 29.8 bits (66), Expect = 0.18
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMI--SKETENVQS-------------SEEIENA 52
E + I+ + F SK+ E VQ I+
Sbjct: 48 KEEIDHIIMS--KDAV----SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 53 FHAIAASDRPYVTKEELYANLTKEMADYCVERMKPY 88
+ R Y+ + + N + A Y V R++PY
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Score = 27.1 bits (59), Expect = 1.5
Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 30/127 (23%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM----ISKETENVQSSEEIENAF---HA 55
E G+ +++ IL V ++ + +++ S EEI++ A
Sbjct: 10 ETGEHQYQYKDIL---------SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 56 IAASDRPYVT----KEELYANLTKEM--ADY--CVERMKP-YVDPKTERGIPGALDYIEF 106
++ + R + T +EE+ +E+ +Y + +K P + YIE
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM-----YIEQ 115
Query: 107 TRTLFQN 113
L+ +
Sbjct: 116 RDRLYND 122
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 29.1 bits (66), Expect = 0.18
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 39
E + + E ++ D N DG + E++ FM E
Sbjct: 126 ETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE 161
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 29.1 bits (66), Expect = 0.19
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E + E + ++ D N D + E++ M
Sbjct: 132 ENLTEEELQEMIAEADRNDDNEIDEDEFIRIM 163
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 29.2 bits (65), Expect = 0.21
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
G + + D + G V ++++ + E++ F+ + Y
Sbjct: 84 HGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSI--LLRGTVHEKLRWTFNLYDINKDGY 141
Query: 64 VTKEELY 70
+ KEE+
Sbjct: 142 INKEEMM 148
Score = 27.6 bits (61), Expect = 0.81
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+++E P + +D N+DG V+L E++
Sbjct: 165 VLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 199
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 29.0 bits (65), Expect = 0.23
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
G + + D + G V ++++ + E++ F+ + Y
Sbjct: 51 HGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSI--LLRGTVHEKLRWTFNLYDINKDGY 108
Query: 64 VTKEELY 70
+ KEE+
Sbjct: 109 INKEEMM 115
Score = 25.5 bits (56), Expect = 3.3
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAF 34
+ +D N+DG V+L E++
Sbjct: 143 DVFFQKMDKNKDGIVTLDEFLES 165
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 29.0 bits (66), Expect = 0.23
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISK---ETENVQSSEEIENAF 53
+ E + ++ N GHV +++ M K ET ++ +E+ +AF
Sbjct: 46 EMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDAF 94
Score = 28.7 bits (65), Expect = 0.25
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ E I+ VD N DG V +E++ M
Sbjct: 120 HQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMM 151
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 29.1 bits (66), Expect = 0.23
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E + +A++D +D + G V +E+M M
Sbjct: 122 ETLSSEDLDAMIDEIDADGSGTVDFEEFMGVM 153
Score = 27.1 bits (61), Expect = 0.91
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSS---EEIENAF 53
++D DP +G + + E V +E+ AF
Sbjct: 49 KSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAF 97
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 29.0 bits (65), Expect = 0.23
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH 54
EE P+ + I ++D N DG ++LQE+ ++ I A
Sbjct: 141 EENTPEKRVDRIFAMMDKNADGKLTLQEFQEG--------SKADPSIVQALS 184
Score = 26.7 bits (59), Expect = 1.4
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
G P + ++ D N+DG + E++ + + E++ AF + Y
Sbjct: 58 FGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLD--EKLRWAFKLYDLDNDGY 115
Query: 64 VTKEELY 70
+T+ E+
Sbjct: 116 ITRNEML 122
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 29.2 bits (65), Expect = 0.24
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+E P+ E I N D ++ +E++
Sbjct: 151 DENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGT 183
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 28.2 bits (63), Expect = 0.24
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 2 VEEGQPDPE-FEAILDLVDPNRDGHVSLQEYMAFM 35
+ D + I +D N+D V QE+++ +
Sbjct: 47 TIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLV 81
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 28.9 bits (65), Expect = 0.25
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETE 41
+ EA D + G + + E +
Sbjct: 144 ISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYT 181
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 28.7 bits (65), Expect = 0.26
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E + + E ++ D N DG + E++ M
Sbjct: 127 EHVTEEDIEDLMKDSDKNNDGRIDFDEFLKMM 158
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 28.2 bits (63), Expect = 0.26
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ I+ +D N DG V QE++ +
Sbjct: 51 ADAVDKIMKELDENGDGEVDFQEFVVLV 78
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 29.0 bits (65), Expect = 0.26
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 27/130 (20%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM---------------ISKETENVQSSEE 48
+P + I++ P+ V ++ + K +
Sbjct: 56 ALAVNPLGDRIIESFFPDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNK 115
Query: 49 IENAFHAIAASDRPYVTKEELYA--------NLTKEMADYCVERMKPYVDPKTERGIPGA 100
+ AF +++ E+ +T+E + +R D + GA
Sbjct: 116 LHYAFQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGD----GA 171
Query: 101 LDYIEFTRTL 110
+ ++EFT++L
Sbjct: 172 VSFVEFTKSL 181
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 28.2 bits (63), Expect = 0.26
Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 1 MVEEGQPDPE-FEAILDLVDPNRDGHVSLQEYMAFM 35
+ + + + D N D + E+++ +
Sbjct: 43 LSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSLL 78
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 28.2 bits (63), Expect = 0.27
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFM 35
+ +D N DG V+ QE++ +
Sbjct: 52 DVWFKELDINTDGAVNFQEFLILV 75
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 28.8 bits (63), Expect = 0.29
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 12 EAILDLVDPNRDGHVSLQE-YMAFMISKET 40
+ D + D +++L E F I ++
Sbjct: 193 TRFFETCDLDNDKYIALDEWAGCFGIKQKD 222
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 28.6 bits (64), Expect = 0.29
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+E P+ I +++D N+DG ++L+E+
Sbjct: 141 DEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGS 173
Score = 27.1 bits (60), Expect = 1.2
Identities = 10/67 (14%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
G P E + ++ D +++G++ +E++ + T + ++++ AF +
Sbjct: 58 FGDPSAFAEYVFNVFDADKNGYIDFKEFICALSV--TSRGELNDKLIWAFQLYDLDNNGL 115
Query: 64 VTKEELY 70
++ +E+
Sbjct: 116 ISYDEML 122
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 27.5 bits (62), Expect = 0.31
Identities = 3/35 (8%), Positives = 13/35 (37%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 38
+ + +D + +G ++ E+ + +
Sbjct: 32 PYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEKM 66
Score = 23.2 bits (51), Expect = 10.0
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMIS 37
+ + + D N+DG +SL E+ ++
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALA 29
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 28.4 bits (63), Expect = 0.31
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ + + F+ ++ +D NRD V QEY F+
Sbjct: 57 FLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 91
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 28.7 bits (64), Expect = 0.32
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E P E +D N+DG V++ E++
Sbjct: 181 EDAPRQHVETFFQKMDKNKDGVVTIDEFIESC 212
Score = 28.7 bits (64), Expect = 0.33
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
+G + + D + +G VS ++++ + E++ AF+ + Y
Sbjct: 97 QGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSI--LLRGTVQEKLNWAFNLYDINKDGY 154
Query: 64 VTKEELY 70
+TKEE+
Sbjct: 155 ITKEEML 161
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 28.3 bits (63), Expect = 0.32
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ + + F+ ++ +D NRD V QEY F+
Sbjct: 48 WLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFL 82
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 28.9 bits (64), Expect = 0.35
Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
+G + + D + +G + ++++ + V E+++ AF+ +
Sbjct: 124 QGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVH--EKLKWAFNLYDINKDGC 181
Query: 64 VTKEELY 70
+TKEE+
Sbjct: 182 ITKEEML 188
Score = 28.5 bits (63), Expect = 0.40
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E P E +D N+DG V++ E++
Sbjct: 208 EDAPLEHVERFFQKMDRNQDGVVTIDEFLETC 239
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 27.9 bits (62), Expect = 0.37
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
++ G+ + +L +D N D V E++ F+
Sbjct: 44 FLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFV 78
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 28.2 bits (64), Expect = 0.37
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E D E + ++D D + DG VS QE++ M
Sbjct: 110 ENLTDEELQEMIDEADRDGDGEVSEQEFLRIM 141
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 27.8 bits (62), Expect = 0.39
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+EE + + +++ +D N DG QE+MAF+
Sbjct: 44 FLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFV 78
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.5 bits (61), Expect = 0.48
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ ++ + ++D N+D V EY+ +
Sbjct: 45 WTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSL 79
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 27.5 bits (62), Expect = 0.48
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D E +A+L D + DG + E+ +
Sbjct: 79 DTETKALLAAGDSDHDGKIGADEFAKMV 106
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 27.5 bits (62), Expect = 0.50
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D E +A L D + DG + + E+ +
Sbjct: 80 DAETKAFLKAADKDGDGKIGIDEFETLV 107
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 28.2 bits (63), Expect = 0.50
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH 54
+ + + IL+ D +RDG ++L E+ + S + ++F
Sbjct: 136 LSASEMKQLIDNILEESDIDRDGTINLSEFQHVI--------SRSPDFASSFK 180
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 27.6 bits (61), Expect = 0.52
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ +E + + E I++ +D N D +S +E++ M
Sbjct: 48 LKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLM 82
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 27.9 bits (63), Expect = 0.52
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E D E A+++ D + DG ++ E++A
Sbjct: 127 ETLTDEELRAMIEEFDLDGDGEINENEFIAIC 158
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 26.8 bits (60), Expect = 0.58
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 1 MVEEGQP----DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
M G + +++ VD N DG VS +E++ M
Sbjct: 33 MQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMM 71
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 27.0 bits (60), Expect = 0.59
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 4 EGQPDPEF-EAILDLVDPNRDGHVSLQEYMAFM 35
G+ + ++ +D N D + +EY F+
Sbjct: 44 LGEMKESSIDDLMKSLDKNSDQEIDFKEYSVFL 76
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 27.9 bits (62), Expect = 0.63
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH 54
+E P+ + I L+D N DG+++L E+ + I A +
Sbjct: 141 DEATPEMRVKKIFKLMDKNEDGYITLDEFREGS--------KVDPSIIGALN 184
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 27.7 bits (62), Expect = 0.72
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETE 41
E + L + +G + ++++ + E
Sbjct: 160 QDEVDQALSEAPIDGNGLIDIKKFAQILTKGAKE 193
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 27.7 bits (62), Expect = 0.81
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 4 EGQPDPEFEAILDLVDPN-RDGHVSLQEYMAFM--ISKETENVQSSEE-IENAFH 54
E D LD D + +DG V+L E+ + +S + + +A+
Sbjct: 147 EWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQ 201
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 27.1 bits (60), Expect = 0.81
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E I++ +D N+D V E++ +
Sbjct: 52 PMLVEKIMNDLDSNKDNEVDFNEFVVLV 79
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 27.1 bits (61), Expect = 0.83
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMIS 37
D E +A L D + DG + + E+ A + +
Sbjct: 79 DAETKAFLADGDKDGDGMIGVDEFAAMIKA 108
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 26.8 bits (60), Expect = 0.87
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D E +A L D + DG + + E+ A +
Sbjct: 80 DAETKAFLKAGDSDGDGAIGVDEWAALV 107
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 27.5 bits (61), Expect = 0.89
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 3 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 53
E +A+ D+VD +++G ++L E+ A+ K +QSSE+ E F
Sbjct: 103 EPTLIRIWGDALFDIVDKDQNGAITLDEWKAYT--KAAGIIQSSEDCEETF 151
Score = 27.5 bits (61), Expect = 0.94
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 36
Q + E + D + G + + E +
Sbjct: 140 IIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL 172
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 27.2 bits (61), Expect = 0.92
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETE 41
E + + P+ G+V + + E
Sbjct: 130 PEEIKNMWAAFPPDVAGNVDYKNICYVITHGEDA 163
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 26.7 bits (59), Expect = 0.92
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
V E + + ++ +D N D V QEY F+
Sbjct: 46 FVGEKVDEEGLKKLMGSLDENSDQQVDFQEYAVFL 80
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 27.5 bits (61), Expect = 0.92
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+++ + + + D DG + +E+ + +
Sbjct: 159 LKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 26.7 bits (59), Expect = 0.98
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFM 35
+ + +D N+D + EY +
Sbjct: 65 DEKMKSLDVNQDSELKFNEYWRLI 88
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 26.4 bits (59), Expect = 1.0
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
+ + + ++ + D N DG +S +E++
Sbjct: 42 LSKDKVKEASAKLIKMADKNSDGKISKEEFLNAN 75
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 26.3 bits (58), Expect = 1.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D E +++ +D N+D V+ QEY+ F+
Sbjct: 50 DAEIARLMEDLDRNKDQEVNFQEYVTFL 77
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 26.7 bits (59), Expect = 1.1
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 4 EGQPDPE-FEAILDLVDPNRDGHVSLQEYMAFM 35
+ Q DP + ++ +D + DG + QE++ +
Sbjct: 50 QNQKDPGVLDRMMKKLDLDSDGQLDFQEFLNLI 82
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Length = 354
Score = 27.5 bits (60), Expect = 1.1
Identities = 15/100 (15%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEEL-- 69
+ IL L++ R+G + + ++S ++ + E F + ++R Y + +
Sbjct: 145 DGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRF--LEETNRLYAAEGQKLM 202
Query: 70 -------YANLTKEMADYCVERMKPYVDPKTERGIPGALD 102
Y + + + +R+ Y+D T++ + ++
Sbjct: 203 QEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVE 242
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 27.1 bits (60), Expect = 1.2
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 2 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFH 54
+ + + IL+ D +RDG ++L E+ + S + ++F
Sbjct: 167 LSASEMKQLIDNILEESDIDRDGTINLSEFQHVI--------SRSPDFASSFK 211
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 26.5 bits (59), Expect = 1.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E +A L D + DG + ++E+ + +
Sbjct: 80 SAETKAFLAAGDTDGDGKIGVEEFQSLV 107
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 26.8 bits (59), Expect = 1.3
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 1 MVEEGQP--DPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIE 50
+ + G P E + ++ V + S +++ M+ K + ++ E
Sbjct: 74 LEKLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLGKRSAILRMILMYE 125
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase,
chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo
sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A
2wk5_A 2j0f_A
Length = 474
Score = 27.0 bits (60), Expect = 1.6
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 6 QPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVT 65
P PE + + +L+ RDG + + ++ +I A +A R +
Sbjct: 22 DPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIG-AM-LMAIRLRG-MD 78
Query: 66 KEELYANLTKEMAD 79
EE + LT+ +A
Sbjct: 79 LEET-SVLTQALAQ 91
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 26.1 bits (58), Expect = 1.6
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMIS 37
+ E ++++D D + DG + E+ + S
Sbjct: 79 ESETKSLMDAADNDGDGKIGADEFQEMVHS 108
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 26.3 bits (59), Expect = 1.7
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMISK 38
E E ++ V + DG ++ + ++ +++
Sbjct: 111 SSEVEELMKEVSVSGDGAINYESFVDMLVTG 141
Score = 24.4 bits (54), Expect = 9.5
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 53
E I ++ L + + S+E+ +AF
Sbjct: 42 ELNTIKGQLNAKE---FDLATFKTVYRKPIKTPTEQSKEMLDAF 82
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 26.6 bits (58), Expect = 1.7
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 5 GQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETEN 42
D D+VD N DG ++ +E + + N
Sbjct: 94 QGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASAN 131
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral
replication, antiviral E inhibitor, helicase, hydrolase;
HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A*
3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Length = 510
Score = 26.7 bits (58), Expect = 1.9
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 5 GQPDPEFE-AILDLVDPNRDGHVSLQEYMAFMISKETENVQSS---EEIENAFHAIAASD 60
P +E A L DP G SLQ+ M + TE +E A I
Sbjct: 35 PLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPKPSVLEAAKKTIINVL 94
Query: 61 RPYVTKEE 68
+ +
Sbjct: 95 EQTIDPPD 102
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 25.7 bits (57), Expect = 2.0
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 4 EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 35
E + ++ D + DG + ++E+ +
Sbjct: 75 RDLSAKETKTLMAAGDKDGDGKIGVEEFSTLV 106
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 25.9 bits (58), Expect = 2.2
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFM 35
D E + + ++ G+ + E+ +
Sbjct: 111 DEEVDEMYREAPIDKKGNFNYVEFTRIL 138
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 26.0 bits (58), Expect = 2.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 22/52 (42%)
Query: 42 NVQSSEEIENAF--------------HAIAASDRPYVTKEEL---YANLTKE 76
+V E+I+N H+IA + KEE + ++E
Sbjct: 79 DVSLDEDIKNLKKFLEENWGSLDIIVHSIAYAP-----KEEFKGGVIDTSRE 125
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 26.1 bits (58), Expect = 2.6
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 22/52 (42%)
Query: 42 NVQSSEEIENAF--------------HAIAASDRPYVTKEEL---YANLTKE 76
+V + I+ F HAI SD K+EL Y + ++
Sbjct: 89 DVADAASIDAVFETLEKKWGKLDFLVHAIGFSD-----KDELTGRYIDTSEA 135
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 26.0 bits (58), Expect = 2.6
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 22/52 (42%)
Query: 42 NVQSSEEIENAF--------------HAIAASDRPYVTKEEL---YANLTKE 76
+V + EIE F H IA ++ KEEL Y N ++
Sbjct: 67 DVTNDAEIETCFASIKEQVGVIHGIAHCIAFAN-----KEELVGEYLNTNRD 113
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 26.0 bits (58), Expect = 2.6
Identities = 4/44 (9%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 10 EFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAF 53
+ A+ + + +E++ + + AF
Sbjct: 48 DVFAVGG-THKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAF 90
Score = 25.2 bits (56), Expect = 5.2
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 8 DPEFEAILDLVDPNRD--GHVSLQEYMAFMISK 38
D + + I+ L D D G+V ++++ +++
Sbjct: 119 DEDVDEIIKLTDLQEDLEGNVKYEDFVKKVMAG 151
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 26.1 bits (58), Expect = 2.7
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 22/52 (42%)
Query: 42 NVQSSEEIENAF--------------HAIAASDRPYVTKEEL---YANLTKE 76
+V +E ++N F HA+A SD K EL Y + +
Sbjct: 88 DVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSD-----KNELKGRYVDTSLG 134
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta
structure, transcription; 2.90A {Sulfolobus tokodaii}
Length = 199
Score = 25.8 bits (57), Expect = 2.7
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 46 SEEIENAFHAIAASDRPYVTKEEL 69
E ++ D P VT +++
Sbjct: 45 PPEFQSRIPFDKVKDIPEVTLDDM 68
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 25.7 bits (57), Expect = 2.7
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 8 DPEFEAILDLVDPNRDGHVSLQEYMAFMIS 37
E + L D + DG + +E+ + S
Sbjct: 79 ASETKTFLAAADHDGDGKIGAEEFQEMVQS 108
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 22/52 (42%)
Query: 42 NVQSSEEIENAF--------------HAIAASDRPYVTKEEL---YANLTKE 76
+V E ++ + H++A + KE L +K
Sbjct: 64 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAP-----KEALEGSLLETSKS 110
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 25.7 bits (57), Expect = 3.0
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGH-VSLQEYMA 33
+VE G+ P+F PN+D V+L E +
Sbjct: 4 LVELGEKAPDFTL------PNQDFEPVNLYEVLK 31
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 25.8 bits (56), Expect = 3.1
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 14 ILDLVDPNRDGHVSLQEYMAFMIS 37
+L++ D R G + + + +IS
Sbjct: 137 LLNVYDTGRTGRIRVLSFKTGIIS 160
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 25.6 bits (57), Expect = 3.2
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYA 71
+ +++ ++Y+ ++ + + EE+ F + Y+TK ++
Sbjct: 50 SIDEKKIKELYGDNLTYEQYLEYLSIC-VHDKDNVEELIKMFAHFDNNCTGYLTKSQMKN 108
Query: 72 NLTK---EMADYCVERMKPYVDPKTERGIPGALDYIEFTRTLFQ 112
LT + D + +DY F + Q
Sbjct: 109 ILTTWGDALTDQEAIDALNAFSSE------DNIDYKLFCEDILQ 146
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 25.6 bits (56), Expect = 3.3
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 5 GQPDPEFE--AILDLVDPNRDGHVSLQEYMAFMISKETE 41
G P E ++ V +S ++++ M+ K +
Sbjct: 80 GVPKTHLEMKKMISEVTGGVSDTISYRDFVNMMLGKRSA 118
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 25.7 bits (57), Expect = 3.4
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDGH-VSLQEY 31
MVE G+ P+FE P+ + V L
Sbjct: 3 MVEIGELAPDFEL------PDTELKKVKLSAL 28
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 25.7 bits (57), Expect = 3.8
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 22/52 (42%)
Query: 42 NVQSSEEIENAF--------------HAIAASDRPYVTKEEL---YANLTKE 76
+VQS EE+ N F H+IA ++ E+L ++ ++E
Sbjct: 92 DVQSDEEVINGFEQIGKDVGNIDGVYHSIAFAN-----MEDLRGRFSETSRE 138
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 25.3 bits (55), Expect = 4.2
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFM 35
+ +L D N DG++ E+ +
Sbjct: 119 DGVLRDDDKNNDGYIDYAEFAKSL 142
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 25.6 bits (57), Expect = 4.4
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 22/52 (42%)
Query: 42 NVQSSEEIENAF--------------HAIAASDRPYVTKEEL---YANLTKE 76
+V EE++ F HAIA + +E + Y + ++
Sbjct: 66 DVTQDEELDALFAGVKEAFGGLDYLVHAIAFAP-----REAMEGRYIDTRRQ 112
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 25.0 bits (55), Expect = 5.6
Identities = 6/64 (9%), Positives = 17/64 (26%), Gaps = 8/64 (12%)
Query: 12 EAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPYVTKEELYA 71
++ ++D + G + + + + F + V EL
Sbjct: 43 RIMIAMLDRDHTGKMGFNAFKELWAAL--------NAWKENFMTVDQDGSGTVEHHELRQ 94
Query: 72 NLTK 75
+
Sbjct: 95 AIGL 98
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET:
CIT; 2.15A {Sulfolobus solfataricus}
Length = 161
Score = 24.5 bits (54), Expect = 7.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDG-HVSLQEY 31
MV+ G P FE +G +SL +Y
Sbjct: 1 MVKVGDKAPLFEG------IADNGEKISLSDY 26
>3qi7_A Putative transcriptional regulator; periplasmic binding
protein-like, structural genomics, joint for structural
genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Length = 371
Score = 24.7 bits (53), Expect = 7.8
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 5/48 (10%)
Query: 62 PYVTKEELYANLTKEMADYCVERMKPYV-----DPKTERGIPGALDYI 104
K+ A + + + C P+V + TE ++
Sbjct: 165 TDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNINTEEDKNKVKQFL 212
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication,
zinc-finger, nuclear protein.; 3.0A {Human herpesvirus
1} SCOP: e.58.1.1
Length = 1136
Score = 25.0 bits (54), Expect = 8.0
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 9 PEFEAILDLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY 63
+++ V D V + M ++ E N + + + A HA++ + PY
Sbjct: 611 EALHTVVNNVRQVVDREVE--QLMRNLV--EGRNFKFRDGLGEANHAMSLTLDPY 661
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 24.5 bits (54), Expect = 9.0
Identities = 3/32 (9%), Positives = 9/32 (28%), Gaps = 7/32 (21%)
Query: 1 MVEEGQPDPEFEAILDLVDPNRDG-HVSLQEY 31
++E + G +L+ +
Sbjct: 8 VLELPAATFDLPL------SLSGGTQTTLRAH 33
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 24.8 bits (55), Expect = 9.1
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 16 DLVDPNRDGHVSLQEYMAFMISKETENVQSSEEIENAFHAIAASDRPY-----VTKEELY 70
D+ N + + ++ E V +E++ + +A +R + K ++
Sbjct: 480 DIALWN---WTHIPQALSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIEVMLPKADIP 536
Query: 71 ANLTK 75
L
Sbjct: 537 PLLGA 541
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,831,822
Number of extensions: 97593
Number of successful extensions: 471
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 227
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)