BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6935
(1575 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1U4Q|B Chain B, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 322
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/321 (63%), Positives = 260/321 (80%)
Query: 795 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 854
ANKQ+ + +KD DFWL EVE+LL SED GKDLASV NL+KKHQL+EADI AH+DR+KD
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 855 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 914
+N QADSL+ S FD S +++KR++IN R++RIK++AA R+A+LNE++ LHQFFRD+ DE
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 915 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL 974
ESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ V +TG+KL D + +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 975 GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVE 1034
G EI+QRL W ELKQLAA RGQ+L+ESL YQ F+A VEEEEAWI+EK L++ E
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 1035 DYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQL 1094
DYGDT+AA+QGLLKKH+AFETDF+VH+DR D+C+ G LI+ NHH ++IT + + L+
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKG 301
Query: 1095 KLDNLMALATKRKTKLMDNSA 1115
K+ +L A +RK KL +NSA
Sbjct: 302 KVSDLEKAAAQRKAKLDENSA 322
Score = 181 bits (459), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 181/331 (54%), Gaps = 14/331 (4%)
Query: 571 ANKQRTYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDK 630
ANKQ+ + +KD + W+S EA L +E+ +V L+KKH+ +
Sbjct: 2 ANKQQNFNTGIKDFDF-----------WLSEVEALLASEDYGKDLASVNNLLKKHQLLEA 50
Query: 631 AINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQT 690
I+AHE+++ L + AD L+ + + + DKR+ + R++ +K +R++L ES
Sbjct: 51 DISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 110
Query: 691 LQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLA 749
L QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQ VL
Sbjct: 111 LHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLD 170
Query: 750 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD 809
G+ L D +G EE +Q RLA D W+ L Q + +L+E+ + + ++A V++ +
Sbjct: 171 TGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEE 228
Query: 810 FWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 869
W+ E +L+ SED G LA++Q L+KKH+ E D H DR+ D+ + LI
Sbjct: 229 AWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHH 288
Query: 870 ASSIQEKRQSINERYERIKNLAAHRQARLNE 900
+I K + + + ++ AA R+A+L+E
Sbjct: 289 VENITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
Score = 153 bits (387), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 139/260 (53%)
Query: 901 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 960
AN F I D + W+ E + L+ S+DYG+DL V NL KKH+ LEA++++H+ +++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 961 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 1020
+ + LM S +++ + + +N + +K +AA R KL+ES F +++E
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 1021 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH 1080
E+WI EK+ L+S EDYG + VQ L KKH E + + H + G KL +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 1081 HADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSE 1140
+ I QR Q L LA R +L ++ Y QF+ + E+WI +K T V SE
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 1141 EYGRDLSTVQTLLTKQETFD 1160
+YG L+ +Q LL K E F+
Sbjct: 242 DYGDTLAAIQGLLKKHEAFE 261
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 174/317 (54%), Gaps = 3/317 (0%)
Query: 692 QQFSRDADEMENWIAE-KLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 750
Q F+ + + W++E + LA+E+ KD A++ + +KHQ EA+++A+ DR++ + +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 751 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDF 810
+L+ S+ V+ + +I +++ + + KL E+++ + + D +
Sbjct: 66 ADSLMTSSAFDTSQ--VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 811 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 870
W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGK 183
Query: 871 SSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDY 930
IQ++ + ++ +K LAA R RL E+ QF ++ +EE+WI EK LV S+DY
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDY 243
Query: 931 GRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAW 990
G L +Q L KKH+ E + H+ + +V GE L+ +N V I ++K L
Sbjct: 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKV 303
Query: 991 SELKQLAANRGQKLDES 1007
S+L++ AA R KLDE+
Sbjct: 304 SDLEKAAAQRKAKLDEN 320
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 170/316 (53%), Gaps = 14/316 (4%)
Query: 374 WMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAA 433
W+S EA L +E+ +V L+KKH+ + I+AHE+++ L + AD L+ + +
Sbjct: 18 WLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDT 77
Query: 434 KPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESY 493
+ DKR+ + R++ +K +R++L ES L QF RD D+ E+WI EK L + E Y
Sbjct: 78 SQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDY 137
Query: 494 -KDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIAD 552
+D +Q+ +KH+ EAELAA+ IQ VL G+ L D +G EE +Q RLA D
Sbjct: 138 GRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD-NTIGKEE-IQQRLAQFVD 195
Query: 553 QWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVD 612
W+ L Q + +L+E+ + + ++A V E+ E W++ + + +E+
Sbjct: 196 HWKELKQLAAARGQRLEESLEYQQFVANV-----------EEEEAWINEKMTLVASEDYG 244
Query: 613 SKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWR 672
++ L+KKHE F+ H++++ + + LI +++ + I K K + +
Sbjct: 245 DTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVS 304
Query: 673 LLKEALIEKRSRLGES 688
L++A +++++L E+
Sbjct: 305 DLEKAAAQRKAKLDEN 320
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 25 ASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIES 84
A++QQ FN I+D + WLSE+E L SEDYGKDL SV NL KKH LLEAD+++H DR++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 85 VKAATEQFL 93
+ + + +
Sbjct: 62 LNSQADSLM 70
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 270 IQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESY-K 328
++++RE + R+ KS A ++R KL +S R F RD D+ ESWI EK S E Y +
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139
Query: 329 ETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGN-------------------------- 362
+ T +Q +KH+ EAE+AAH AI + +TG
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199
Query: 363 -------------------DFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHED 403
F + E+ E W++ + + +E+ ++ L+KKHE
Sbjct: 200 LKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEA 259
Query: 404 FDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 463
F+ H++++ + + LI +++ + I K K + + L++A +++++L E
Sbjct: 260 FETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
Query: 464 S 464
+
Sbjct: 320 N 320
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%)
Query: 1 MEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTS 60
+ Q V W+ L +G +L+E+ + Q F +E+ E W++E + SEDYG L +
Sbjct: 190 LAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAA 249
Query: 61 VQNLQKKHALLEADVASHLDRIESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDLE 118
+Q L KKH E D H DR+ V A E ++ ++ A +K + VSDLE
Sbjct: 250 IQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLE 307
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 21 KLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLD 80
KL E+ + F R ++D E W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H
Sbjct: 104 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 163
Query: 81 RIESV 85
I+ V
Sbjct: 164 AIQGV 168
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 269 DIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYK 328
+IQ+R Q ++ + + K A ++ ++LE+S +Q F + +E E+WI EK+ + E Y
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYG 244
Query: 329 ET-TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYR 366
+T +Q ++KH+AFE + H + + + G D +
Sbjct: 245 DTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 283
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain
Alpha Spectrin
Length = 216
Score = 296 bits (758), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 143/214 (66%), Positives = 178/214 (83%)
Query: 795 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 854
ANKQ+ + +KD DFWL EVE+LL SED GKDLASV NL+KKHQL+EADI AH+DR+KD
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 855 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 914
+N QADSL+ S FD S +++KR++IN R++RIK++AA R+A+LNE++ LHQFFRD+ DE
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 915 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL 974
ESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ V +TG+KL D + +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 975 GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESL 1008
G EI+QRL W ELKQLAA RGQ+L+ESL
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215
Score = 124 bits (311), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 14/226 (6%)
Query: 571 ANKQRTYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDK 630
ANKQ+ + +KD + W+S EA L +E+ +V L+KKH+ +
Sbjct: 2 ANKQQNFNTGIKDFDF-----------WLSEVEALLASEDYGKDLASVNNLLKKHQLLEA 50
Query: 631 AINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQT 690
I+AHE+++ L + AD L+ + + + DKR+ + R++ +K +R++L ES
Sbjct: 51 DISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 110
Query: 691 LQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLA 749
L QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQ VL
Sbjct: 111 LHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLD 170
Query: 750 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA 795
G+ L D +G EE +Q RLA D W+ L Q + +L+E+
Sbjct: 171 TGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%)
Query: 901 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 960
AN F I D + W+ E + L+ S+DYG+DL V NL KKH+ LEA++++H+ +++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 961 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 1020
+ + LM S +++ + + +N + +K +AA R KL+ES F +++E
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 1021 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNH 1080
E+WI EK+ L+S EDYG + VQ L KKH E + + H + G KL +
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 1081 HADSITQRCQQLQLKLDNLMALATKRKTKL 1110
+ I QR Q L LA R +L
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRL 211
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 118/214 (55%), Gaps = 3/214 (1%)
Query: 359 NTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGAL 418
N +F + + W+S EA L +E+ +V L+KKH+ + I+AHE+++ L
Sbjct: 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDL 62
Query: 419 QTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEME 478
+ AD L+ + + + DKR+ + R++ +K +R++L ES L QF RD D+ E
Sbjct: 63 NSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEE 122
Query: 479 NWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCV 537
+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQ VL G+ L D +
Sbjct: 123 SWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDD-NTI 181
Query: 538 GSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA 571
G EE +Q RLA D W+ L Q + +L+E+
Sbjct: 182 GKEE-IQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 106/207 (51%), Gaps = 1/207 (0%)
Query: 1011 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 1070
Q+F +++ + W+SE + LL+ EDYG +A+V LLKKH E D S H DR D+ S
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 1071 GNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWI 1130
+ L+ + + + + + + + ++A R+ KL ++ QF D ESWI
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 1131 ADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTP 1190
+K+ V SE+YGRDL+ VQ L K + +A L A E IQ + +L N
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE-PAIQGVLDTGKKLSDDNTIGKE 184
Query: 1191 AIVKRHGDVIARWQKLLGDSNARKQRL 1217
I +R + W++L + AR QRL
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQRL 211
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 115/211 (54%), Gaps = 3/211 (1%)
Query: 692 QQFSRDADEMENWIAE-KLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 750
Q F+ + + W++E + LA+E+ KD A++ + +KHQ EA+++A+ DR++ + +
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 751 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDF 810
+L+ S+ V+ + +I +++ + + KL E+++ + + D +
Sbjct: 66 ADSLMTSSAFDTSQ--VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 811 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 870
W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGK 183
Query: 871 SSIQEKRQSINERYERIKNLAAHRQARLNEA 901
IQ++ + ++ +K LAA R RL E+
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 79.7 bits (195), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 25 ASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIES 84
A++QQ FN I+D + WLSE+E L SEDYGKDL SV NL KKH LLEAD+++H DR++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 85 VKAATEQFL 93
+ + + +
Sbjct: 62 LNSQADSLM 70
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 270 IQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESY-K 328
++++RE + R+ KS A ++R KL +S R F RD D+ ESWI EK S E Y +
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139
Query: 329 ETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTG 361
+ T +Q +KH+ EAE+AAH AI + +TG
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTG 172
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 21 KLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLD 80
KL E+ + F R ++D E W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H
Sbjct: 104 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 163
Query: 81 RIESV 85
I+ V
Sbjct: 164 AIQGV 168
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 213
Score = 282 bits (722), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 136/212 (64%), Positives = 171/212 (80%)
Query: 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 963
+HQFFRD+ DEESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+PAIQ+V +
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 964 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 1023
TG+KL D + +G EI+QRL W ELKQLAA RGQ+L+ESL YQ F+A VEEEEAW
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 1024 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 1083
I+EK L++ EDYGDT+AA+QGLLKKH+AFETDF+VH+DR D+C+ G LI+ NHH +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 1084 SITQRCQQLQLKLDNLMALATKRKTKLMDNSA 1115
+IT + + L+ K+ +L A +RK KL +NSA
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDENSA 213
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 3/211 (1%)
Query: 691 LQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLA 749
+ QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQSVL
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 750 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD 809
G+ L D +G EE +Q RLA D W+ L Q + +L+E+ + + ++A V++ +
Sbjct: 62 TGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEE 119
Query: 810 FWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 869
W+ E +L+ SED G LA++Q L+KKH+ E D H DR+ D+ + LI
Sbjct: 120 AWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHH 179
Query: 870 ASSIQEKRQSINERYERIKNLAAHRQARLNE 900
+I K + + + ++ AA R+A+L+E
Sbjct: 180 VENITAKMKGLKGKVSDLEKAAAQRKAKLDE 210
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 113/201 (56%)
Query: 807 DLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSG 866
D + W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+ I+ + L D
Sbjct: 11 DEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDN 70
Query: 867 QFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVG 926
IQ++ + ++ +K LAA R RL E+ QF ++ +EE+WI EK LV
Sbjct: 71 TIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVA 130
Query: 927 SDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLL 986
S+DYG L +Q L KKH+ E + H+ + +V GE L+ +N V I ++K L
Sbjct: 131 SEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL 190
Query: 987 NQAWSELKQLAANRGQKLDES 1007
S+L++ AA R KLDE+
Sbjct: 191 KGKVSDLEKAAAQRKAKLDEN 211
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 119/223 (53%), Gaps = 14/223 (6%)
Query: 467 LQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANADRIQSVLA 525
+ QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+ IQSVL
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 526 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLP 585
G+ L D +G EE +Q RLA D W+ L Q + +L+E+ + + ++A V
Sbjct: 62 TGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANV---- 115
Query: 586 YFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTL 645
E+ E W++ + + +E+ ++ L+KKHE F+ H++++ +
Sbjct: 116 -------EEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCAN 168
Query: 646 ADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGES 688
+ LI +++ + I K K + + L++A +++++L E+
Sbjct: 169 GEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Query: 364 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 423
F+RD + E+W+ ++ +++E+ V+ L KKH+ + + AHE I ++
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 424 QLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAE 483
+L + + I + Q +D W+ LK+ + RL ES QQF + +E E WI E
Sbjct: 65 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINE 124
Query: 484 KLQLATEESYKDP-ANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDK 533
K+ L E Y D A IQ +KH+AFE + + DR+ V A G++LI K
Sbjct: 125 KMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 175
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 76/148 (51%)
Query: 1013 FLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGN 1072
F +++EE+WI EK+ L+S EDYG + VQ L KKH E + + H + G
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 1073 KLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIAD 1132
KL + + I QR Q L LA R +L ++ Y QF+ + E+WI +
Sbjct: 65 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINE 124
Query: 1133 KETHVKSEEYGRDLSTVQTLLTKQETFD 1160
K T V SE+YG L+ +Q LL K E F+
Sbjct: 125 KMTLVASEDYGDTLAAIQGLLKKHEAFE 152
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 1/169 (0%)
Query: 590 KDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQL 649
+D + E+W+ ++ +++E+ V+ L KKH+ + + AHE I ++ +L
Sbjct: 7 RDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKL 66
Query: 650 IAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKL 709
+ + I + Q +D W+ LK+ + RL ES QQF + +E E WI EK+
Sbjct: 67 SDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKM 126
Query: 710 QLATEESYKDP-ANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDK 757
L E Y D A IQ +KH+AFE + + DR+ V A G++LI K
Sbjct: 127 TLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK 175
Score = 63.9 bits (154), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 60/118 (50%)
Query: 1 MEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTS 60
+ Q V W+ L +G +L+E+ + Q F +E+ E W++E + SEDYG L +
Sbjct: 81 LAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAA 140
Query: 61 VQNLQKKHALLEADVASHLDRIESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDLE 118
+Q L KKH E D H DR+ V A E ++ ++ A +K + VSDLE
Sbjct: 141 IQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLE 198
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 31 FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESV 85
F R ++D E W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H I+SV
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSV 59
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 91/209 (43%), Gaps = 47/209 (22%)
Query: 302 QYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 360
Q+F RD D+ ESWI EK S E Y ++ T +Q +KH+ EAE+AAH AI + +T
Sbjct: 4 QFF-RDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT 62
Query: 361 GN---------------------------------------------DFYRDCEQAENWM 375
G F + E+ E W+
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 122
Query: 376 SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKP 435
+ + + +E+ ++ L+KKHE F+ H++++ + + LI +++ +
Sbjct: 123 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 182
Query: 436 IDDKRKQVLDRWRLLKEALIEKRSRLGES 464
I K K + + L++A +++++L E+
Sbjct: 183 ITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 269 DIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYK 328
+IQ+R Q ++ + + K A ++ ++LE+S +Q F + +E E+WI EK+ + E Y
Sbjct: 76 EIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYG 135
Query: 329 ET-TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYR 366
+T +Q ++KH+AFE + H + + + G D +
Sbjct: 136 DTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 174
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 1118 QFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTL 1177
QF D ESWI +K+ V SE+YGRDL+ VQ L K + +A L A E IQ++
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE-PAIQSVLDT 62
Query: 1178 KDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 1217
+L N I +R + W++L + AR QRL
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 102
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/463 (26%), Positives = 227/463 (49%), Gaps = 57/463 (12%)
Query: 1118 QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 1176
+F KA + ESW KE ++ ++Y LS ++ LL K E F++ L A + + ++ I
Sbjct: 374 KFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQ-DRVEQIAA 432
Query: 1177 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAK 1236
+ +L ++ +P++ R + +W L + R++ L R ++ I+ LYL +AK
Sbjct: 433 IAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAK 492
Query: 1237 KASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWFENAEEDLTDPVRCNS 1296
+A+ F N+W E A EDL D ++
Sbjct: 493 RAAPF------------------------------------NNWMEGAMEDLQDTFIVHT 516
Query: 1297 IEEIRALREXXXXXXXXXXXXXXDFEALAALDQQI----KSFNV---GPNPYTWFTMEAL 1349
IEEI+ L + +A+ + ++ ++++V G NPYT T + +
Sbjct: 517 IEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEI 576
Query: 1350 EDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQW----LTETRTSMMEG 1405
W ++++++ RD L +E RQ +N+ LRK+F AN W + E +E
Sbjct: 577 NGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEM 636
Query: 1406 TGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQL 1465
G+LE QL +++ + + + + ++E ++E LI DN++T ++ + W+QL
Sbjct: 637 HGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQL 696
Query: 1466 DQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY 1525
R + +E QI R+ G+S++ + EF F HFD+ K+G ++ +F++CL ++GY
Sbjct: 697 LTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGY 756
Query: 1526 DLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKET 1568
++ + EF I+ +VDPNR G V+ Q ++ FM S+ET
Sbjct: 757 NM-------GEAEFARIMSIVDPNRMGVVTFQAFIDFM-SRET 791
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 126/274 (45%), Gaps = 37/274 (13%)
Query: 986 LNQAWSELKQLAAN----------RGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVED 1035
+N AW L+Q R ++LD + F K E+W K+ +L +D
Sbjct: 340 INNAWGGLEQAEKGYEEWLLNEIRRLERLDH--LAEKFRQKASIHESWTDGKEAMLQQKD 397
Query: 1036 Y-GDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQL 1094
Y T++ ++ LLKKH+AFE+D + H+DR I + +L E + + S+ RCQ++
Sbjct: 398 YETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICD 457
Query: 1095 KLDNLMALATKRK------TKLMD--NSAYLQFMWKADVVESWIADKETHVKSEEYGRDL 1146
+ DNL AL KR+ KL++ + YL++ +A +W+ ++ +
Sbjct: 458 QWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTI 517
Query: 1147 STVQTLLTKQETFDAGLHAFEHE-----GIQN-----ITTLKDQLVASNHDQTPAIVKRH 1196
+Q L T E F A L + E GI N + T + +N T + +
Sbjct: 518 EEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEIN 577
Query: 1197 G------DVIARWQKLLGDSNARKQRLLRMQEQF 1224
G ++ R + L + +AR+Q+ R+++QF
Sbjct: 578 GKWEHVRQLVPRRDQALMEEHARQQQNERLRKQF 611
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 89/181 (49%), Gaps = 12/181 (6%)
Query: 357 LDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKT-DNVEALIKKHEDFDKAINAHEEKI 415
LD+ F + E+W +EA L ++ ++ T ++AL+KKHE F+ + AH++++
Sbjct: 368 LDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRV 427
Query: 416 GALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLL-------KEALIEKRSRLGES--QT 466
+ +A +L D+Y + ++ + +++ D+W L +EAL E+ +L E+ Q
Sbjct: 428 EQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREAL-ERTEKLLETIDQL 486
Query: 467 LQQFSRDADEMENWIAEKLQ-LATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLA 525
++++ A NW+ ++ L IQ H+ F+A L Q++L
Sbjct: 487 YLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILG 546
Query: 526 M 526
+
Sbjct: 547 I 547
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 596 ENWMSAREAFLNAEEVDSKT-DNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADH 654
E+W +EA L ++ ++ T ++AL+KKHE F+ + AH++++ + +A +L D+
Sbjct: 383 ESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDY 442
Query: 655 YAAKPIDDKRKQVLDRWRLL-------KEALIEKRSRLGES--QTLQQFSRDADEMENWI 705
Y + ++ + +++ D+W L +EAL E+ +L E+ Q ++++ A NW+
Sbjct: 443 YDSPSVNARCQKICDQWDNLGALTQKRREAL-ERTEKLLETIDQLYLEYAKRAAPFNNWM 501
Query: 706 AEKLQ-LATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 750
++ L IQ H+ F+A L Q++L +
Sbjct: 502 EGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGI 547
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 106/254 (41%), Gaps = 27/254 (10%)
Query: 811 WLGEVESLLTSED-SGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD 869
W E++L +D L+ ++ L+KKH+ E+D+ AH DR++ + A L + +D
Sbjct: 385 WTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYD 444
Query: 870 ASSIQEKRQSINERYERIKNLAAHRQARLNEA----NTLHQFFRDIADE----ESWIKEK 921
+ S+ + Q I ++++ + L R+ L T+ Q + + A +W++
Sbjct: 445 SPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGA 504
Query: 922 KLLVGSDDYGRDLTGVQNLKKKHKRLEAELA---SHQPAIQNVQETGEKLMDVSNLGV-- 976
+ + +Q L H++ +A L + AI + K++ ++ +
Sbjct: 505 MEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAG 564
Query: 977 --PEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQ--------HFLAKVEEEEAWISE 1026
P + +N W ++QL R Q L E Q F A+ WI
Sbjct: 565 TNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQT 624
Query: 1027 KQQ---LLSVEDYG 1037
K + +S+E +G
Sbjct: 625 KMEEIGRISIEMHG 638
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 39 ELWLSEIEGQLMSEDY-GKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQF--LEH 95
E W E L +DY L+ ++ L KKH E+D+A+H DR+E + A ++ L++
Sbjct: 383 ESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDY 442
Query: 96 Y 96
Y
Sbjct: 443 Y 443
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 9/164 (5%)
Query: 194 VPAAYVKKMEAGLTASQQNLADVKEVKILETANDIQERREQVLNRYADFKSEAR-SKREK 252
+P + E + A QQ L D ++ + L +QE+ + +N + +++ R S R
Sbjct: 270 IPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEIN-FNTLQTKLRLSNRPA 328
Query: 253 LEDITVKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELE 312
E K++ N+ EQ Y ++ + E+L+ + F++ A E
Sbjct: 329 F---MPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLD--HLAEKFRQKASIHE 383
Query: 313 SWIYEKLQAASDESYKETT--NLQAKIQKHQAFEAEVAAHSNAI 354
SW K + Y+ T ++A ++KH+AFE+++AAH + +
Sbjct: 384 SWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRV 427
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
Structures
Length = 110
Score = 157 bits (397), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 92/110 (83%)
Query: 896 ARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQ 955
A+LNE++ LHQFFRD+ DEESWIKEKKLLV S+DYGRDLTGVQNL+KKHKRLEAELA+H+
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 956 PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLD 1005
PAIQ V +TG+KL D + +G EI+QRL W ELKQLAA RGQ+L+
Sbjct: 61 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 110
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 459 SRLGESQTLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANA 517
++L ES L QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 518 DRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKL 568
IQ VL G+ L D +G EE +Q RLA D W+ L Q + +L
Sbjct: 61 PAIQGVLDTGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 683 SRLGESQTLQQFSRDADEMENWIAEKLQLATEESY-KDPANIQSKHQKHQAFEAELAANA 741
++L ES L QF RD D+ E+WI EK L + E Y +D +Q+ +KH+ EAELAA+
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 742 DRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKL 792
IQ VL G+ L D +G EE +Q RLA D W+ L Q + +L
Sbjct: 61 PAIQGVLDTGKKLSDD-NTIGKEE-IQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%)
Query: 1003 KLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRD 1062
KL+ES F +++EE+WI EK+ L+S EDYG + VQ L KKH E + + H
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 1063 RCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKL 1110
+ G KL + + I QR Q L LA R +L
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 60/108 (55%)
Query: 791 KLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDD 850
KL E+++ + + D + W+ E + L++SED G+DL VQNL KKH+ +EA++ AH+
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 851 RIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARL 898
I+ + L D IQ++ + ++ +K LAA R RL
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 21 KLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLD 80
KL E+ + F R ++D E W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 81 RIESV 85
I+ V
Sbjct: 62 AIQGV 66
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 1108 TKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFE 1167
KL ++ QF D ESWI +K+ V SE+YGRDL+ VQ L K + +A L A E
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 1168 HEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 1217
IQ + +L N I +R + W++L + AR QRL
Sbjct: 61 -PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 294 KLEDSRRFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSN 352
KL +S R F RD D+ ESWI EK S E Y ++ T +Q +KH+ EAE+AAH
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 353 AIVVLDNTGNDFYRD 367
AI + +TG D
Sbjct: 62 AIQGVLDTGKKLSDD 76
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%)
Query: 364 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 423
F+RD + E+W+ ++ +++E+ V+ L KKH+ + + AHE I +
Sbjct: 12 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGK 71
Query: 424 QLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRL 461
+L + + I + Q +D W+ LK+ + RL
Sbjct: 72 KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 590 KDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQL 649
+D + E+W+ ++ +++E+ V+ L KKH+ + + AHE I + +L
Sbjct: 14 RDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKL 73
Query: 650 IAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRL 685
+ + I + Q +D W+ LK+ + RL
Sbjct: 74 SDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin
pdb|2SPC|B Chain B, Crystal Structure Of The Repetitive Segments Of Spectrin
Length = 107
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 86/100 (86%)
Query: 364 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 423
+ RDCE AE+WMSAREAFLNA++ + NVEALIKKHEDFDKAIN HE+KI ALQT+AD
Sbjct: 8 YMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVAD 67
Query: 424 QLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 463
QLIA +HYA+ +D+KRKQVL+RWR LKE LIEKRSRLG+
Sbjct: 68 QLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/98 (73%), Positives = 85/98 (86%)
Query: 590 KDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQL 649
+DCE AE+WMSAREAFLNA++ + NVEALIKKHEDFDKAIN HE+KI ALQT+ADQL
Sbjct: 10 RDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQL 69
Query: 650 IAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 687
IA +HYA+ +D+KRKQVL+RWR LKE LIEKRSRLG+
Sbjct: 70 IAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1119 FMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLK 1178
+M ++ ESW++ +E + +++ V+ L+ K E FD ++ E + I + T+
Sbjct: 8 YMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQK-IAALQTVA 66
Query: 1179 DQLVASNHDQTPAIVKRHGDVIARWQKL 1206
DQL+A NH + + ++ V+ RW+ L
Sbjct: 67 DQLIAQNHYASNLVDEKRKQVLERWRHL 94
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 48/90 (53%)
Query: 811 WLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDA 870
W+ E+ L ++D +V+ LIKKH+ + I H+ +I + AD LI + +
Sbjct: 18 WMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYAS 77
Query: 871 SSIQEKRQSINERYERIKNLAAHRQARLNE 900
+ + EKR+ + ER+ +K +++RL +
Sbjct: 78 NLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 1006 ESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCA 1065
++L Q ++ E E+W+S ++ L+ +D + V+ L+KKH+ F+ + H + A
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 1066 DICSAGNKLIEAKNHHADSIT 1086
+ + ++LI A+NH+A ++
Sbjct: 61 ALQTVADQLI-AQNHYASNLV 80
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%)
Query: 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 963
L + RD ESW+ ++ + +DD V+ L KKH+ + + H+ I +Q
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQT 64
Query: 964 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQ 995
++L+ ++ ++++ K + + W LK+
Sbjct: 65 VADQLIAQNHYASNLVDEKRKQVLERWRHLKE 96
>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
pdb|3F31|B Chain B, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
Length = 149
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 85/102 (83%)
Query: 261 VKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQ 320
VK+LETA DIQERR+QVL+RY FK + +R+KLEDS RFQ+F+RDA+ELE WI EKLQ
Sbjct: 8 VKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQ 67
Query: 321 AASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGN 362
ASDE+YK+ TNLQ K+QKHQAFEAEV A+S AIV LD TGN
Sbjct: 68 IASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGN 109
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 432 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 491
A+ I ++R+QVLDR+ KE +R +L +S Q F RDA+E+E WI EKLQ+A++E
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
Query: 492 SYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIA 551
+YKDP N+Q K QKHQAFEAE+ AN+ I + G +I + + E ++ RL +
Sbjct: 73 NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHF--ASETIRTRLMELH 130
Query: 552 DQWEFLTQKTTEKSLKL 568
QWE L +K EK +KL
Sbjct: 131 RQWELLLEKMREKGIKL 147
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 87/137 (63%), Gaps = 2/137 (1%)
Query: 656 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 715
A+ I ++R+QVLDR+ KE +R +L +S Q F RDA+E+E WI EKLQ+A++E
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
Query: 716 SYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIA 775
+YKDP N+Q K QKHQAFEAE+ AN+ I + G +I + + E ++ RL +
Sbjct: 73 NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHF--ASETIRTRLMELH 130
Query: 776 DQWEFLTQKTTEKSLKL 792
QWE L +K EK +KL
Sbjct: 131 RQWELLLEKMREKGIKL 147
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 870 ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDD 929
A IQE+RQ + +RY R K L+ R+ +L ++ F RD + E WI+EK L + SD+
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEK-LQIASDE 72
Query: 930 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQA 989
+D T +Q +KH+ EAE+ ++ AI + ETG ++ + I RL L++
Sbjct: 73 NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQ 132
Query: 990 WSELKQLAANRGQKL 1004
W L + +G KL
Sbjct: 133 WELLLEKMREKGIKL 147
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 969 MDVSNLGVPE----IEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWI 1024
MD S + V E I++R + + + K+L+ R QKL++S +Q F EE E WI
Sbjct: 3 MDPSGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWI 62
Query: 1025 SEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADS 1084
EK Q+ S E+Y D +QG L+KH AFE + + + GN +I + +++
Sbjct: 63 QEKLQIASDENYKDP-TNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASET 121
Query: 1085 ITQRCQQLQLKLDNLMALATKRKTKLM 1111
I R +L + + L+ ++ KL+
Sbjct: 122 IRTRLMELHRQWELLLEKMREKGIKLL 148
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 759 QCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESL 818
+ + + E +Q R + D++ + +T + KL+++ + + + ++L+ W+ E +
Sbjct: 9 KVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQE-KLQ 67
Query: 819 LTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQ 878
+ S+++ KD ++Q ++KHQ EA++QA+ I ++ + +I G F + +I+ +
Sbjct: 68 IASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLM 127
Query: 879 SINERYE 885
++ ++E
Sbjct: 128 ELHRQWE 134
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 587 FSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLA 646
F ++D E+ E W+ + + E T N++ ++KH+ F+ + A+ I L
Sbjct: 50 FFQRDAEELEKWIQEKLQIASDENYKDPT-NLQGKLQKHQAFEAEVQANSGAIVKLDETG 108
Query: 647 DQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRL 685
+ +I+ H+A++ I + ++ +W LL E + EK +L
Sbjct: 109 NLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKL 147
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 1069 SAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVES 1128
+G K++E A+ I +R QQ+ + L+T R+ KL D+ + F A+ +E
Sbjct: 5 PSGVKVLET----AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEK 60
Query: 1129 WIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQ 1188
WI +K + S+E +D + +Q L K + F+A + A I + + +++ H
Sbjct: 61 WIQEK-LQIASDENYKDPTNLQGKLQKHQAFEAEVQA-NSGAIVKLDETGNLMISEGHFA 118
Query: 1189 TPAIVKRHGDVIARWQKLL 1207
+ I R ++ +W+ LL
Sbjct: 119 SETIRTRLMELHRQWELLL 137
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 6 HLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQ 65
H ++ L+T + KL+++ + Q F R E++E W+ E + Q+ S++ KD T++Q
Sbjct: 29 HRFKELSTL---RRQKLEDSYRFQFFQRDAEELEKWIQE-KLQIASDENYKDPTNLQGKL 84
Query: 66 KKHALLEADVASH 78
+KH EA+V ++
Sbjct: 85 QKHQAFEAEVQAN 97
>pdb|3FB2|A Chain A, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a.
pdb|3FB2|B Chain B, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a
Length = 218
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 123/217 (56%), Gaps = 14/217 (6%)
Query: 467 LQQFSRDADEMENWI-AEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLA 525
LQ+F D ++ +WI + ++++E KD ++ ++HQ E+ A A Q+
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 526 MGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLP 585
GQ L+ E ++ +L I DQ E++ K ++R + +L
Sbjct: 75 FGQQLLAHGHYASPE--IKQKL-DILDQ---------ERADLEKAWVQRRXXLDQCLELQ 122
Query: 586 YFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTL 645
F + DCEQAENW +AREAFLN E+ D+VEALIKKHEDFDKAIN EEKI ALQ
Sbjct: 123 LFHR-DCEQAENWXAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 646 ADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKR 682
ADQLIAA HYA I +R +VLDRWR LK IEKR
Sbjct: 182 ADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQXIEKR 218
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 101/204 (49%), Gaps = 46/204 (22%)
Query: 301 FQYFKRDADELESWIYE-KLQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDN 359
Q F D +L SWI + +SDE K+ T +A +++HQ E+ A + +
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 360 TGND---------------------------------------------FYRDCEQAENW 374
G F+RDCEQAENW
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 375 MSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAK 434
+AREAFLN E+ D+VEALIKKHEDFDKAIN EEKI ALQ ADQLIAA HYA
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 435 PIDDKRKQVLDRWRLLKEALIEKR 458
I +R +VLDRWR LK IEKR
Sbjct: 195 DISSRRNEVLDRWRRLKAQXIEKR 218
Score = 100 bits (250), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 103/185 (55%)
Query: 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 963
L +F D D SWI + LV SD+ +D+TG + L ++H+ E+ + Q ++
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 964 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 1023
G++L+ + PEI+Q+L +L+Q ++L++ R LD+ L Q F E+ E W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 1024 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 1083
+ ++ L+ ED GD++ +V+ L+KKH+ F+ +V ++ A + + ++LI A ++
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 1084 SITQR 1088
I+ R
Sbjct: 195 DISSR 199
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 98/203 (48%), Gaps = 5/203 (2%)
Query: 364 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 423
F D +W++ ++++E+ EAL+++H++ I+A A +
Sbjct: 18 FLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQ 77
Query: 424 QLIAADHYAAKPIDDKRKQVLDRWRL-LKEALIEKRSRLGESQTLQQFSRDADEMENWIA 482
QL+A HYA+ I K +LD+ R L++A +++R L + LQ F RD ++ ENW A
Sbjct: 78 QLLAHGHYASPEIKQK-LDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENWXA 136
Query: 483 EK-LQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEE 541
+ L TE+ ++++ +KH+ F+ + ++I ++ A LI +
Sbjct: 137 AREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGD- 195
Query: 542 AVQARLASIADQWEFLTQKTTEK 564
+ +R + D+W L + EK
Sbjct: 196 -ISSRRNEVLDRWRRLKAQXIEK 217
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 597 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 656
+W++ ++++E+ EAL+++H++ I+A A + QL+A HYA
Sbjct: 27 SWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYA 86
Query: 657 AKPIDDKRKQVLDRWRL-LKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK-LQLATE 714
+ I K +LD+ R L++A +++R L + LQ F RD ++ ENW A + L TE
Sbjct: 87 SPEIKQK-LDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENWXAAREAFLNTE 145
Query: 715 ESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASI 774
+ ++++ +KH+ F+ + ++I ++ A LI + + +R +
Sbjct: 146 DKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGD--ISSRRNEV 203
Query: 775 ADQWEFLTQKTTEK 788
D+W L + EK
Sbjct: 204 LDRWRRLKAQXIEK 217
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)
Query: 1011 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 1070
Q FL+ + +WI+ + L+S ++ + + LL++H T+
Sbjct: 16 QRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQF 75
Query: 1071 GNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQ-FMWKADVVESW 1129
G +L+ ++ + I Q+ L + +L +R+ L D LQ F + E+W
Sbjct: 76 GQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXL-DQCLELQLFHRDCEQAENW 134
Query: 1130 IADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQT 1189
A +E + +E+ G L +V+ L+ K E FD ++ E E I + DQL+A+ H
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQE-EKIAALQAFADQLIAAGHYAK 193
Query: 1190 PAIVKRHGDVIARWQKL 1206
I R +V+ RW++L
Sbjct: 194 GDISSRRNEVLDRWRRL 210
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 88/194 (45%)
Query: 801 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 860
+++ +DL W+ + L++S++ KD+ + L+++HQ +I A +
Sbjct: 18 FLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQ 77
Query: 861 SLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKE 920
L+ G + + I++K +++ ++ R+ L++ L F RD E+W
Sbjct: 78 QLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENWXAA 137
Query: 921 KKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIE 980
++ + ++D G L V+ L KKH+ + + + I +Q ++L+ + +I
Sbjct: 138 REAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDIS 197
Query: 981 QRLKLLNQAWSELK 994
R + W LK
Sbjct: 198 SRRNEVLDRWRRLK 211
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 22 LQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDR 81
L + + Q F+R E E W + E L +ED G L SV+ L KKH + + ++
Sbjct: 115 LDQCLELQLFHRDCEQAENWXAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEK 174
Query: 82 IESVKAATEQFLE--HYGKDEDSS 103
I +++A +Q + HY K + SS
Sbjct: 175 IAALQAFADQLIAAGHYAKGDISS 198
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 62/70 (88%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK++
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDP 62
Query: 205 GLTASQQNLA 214
+AS++NL
Sbjct: 63 AQSASRENLG 72
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 177/379 (46%), Gaps = 49/379 (12%)
Query: 1118 QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 1176
+F KA E+W KE + ++Y L+ V+ LL K E F++ L A + + ++ I
Sbjct: 135 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQ-DRVEQIAA 193
Query: 1177 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAK 1236
+ +L ++ + R + +W +L + R++ L RM++ I+ L+L FAK
Sbjct: 194 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 253
Query: 1237 KASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWFENAEEDLTDPVRCNS 1296
+A+ F N+W E A EDL D +S
Sbjct: 254 RAAPF------------------------------------NNWMEGAMEDLQDMFIVHS 277
Query: 1297 IEEIRALREXXXXXXXXXXXXXXDFEALAALDQQ----IKSFNV---GPNPYTWFTMEAL 1349
IEEI++L + +++ A+ + I+S+N+ NPY+ TM+ L
Sbjct: 278 IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDEL 337
Query: 1350 EDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQW----LTETRTSMMEG 1405
W +++++ RD L +E RQ N+ LR++FA ANA W + E S ++
Sbjct: 338 RTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQI 397
Query: 1406 TGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQL 1465
TG+LE Q+ +K+ + + ++++ K+E +++E L+ DN++T ++ + W+ L
Sbjct: 398 TGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELL 457
Query: 1466 DQLGMRMQHNLEQQIQARN 1484
R + +E QI R+
Sbjct: 458 LTTIARTINEVETQILTRD 476
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 1013 FLAKVEEEEAWISEKQQLLSVEDY-GDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAG 1071
F K E W K+Q+L +DY ++ V+ LL+KH+AFE+D + H+DR I +
Sbjct: 136 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 195
Query: 1072 NKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRK------TKLMD--NSAYLQFMWKA 1123
+L E H A ++ RCQ++ + D L L KR+ KL++ + +L+F +A
Sbjct: 196 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA 255
Query: 1124 DVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGL 1163
+W+ ++ + +Q+L+T E F A L
Sbjct: 256 APFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATL 295
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/389 (23%), Positives = 162/389 (41%), Gaps = 49/389 (12%)
Query: 676 EALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFE- 734
E L+E+ RL S+ L+ R +EN EK A ++ +D + + KH+ + E
Sbjct: 10 ERLMEEYERLA-SELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEK 68
Query: 735 AELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQ----------- 783
+L N + +Q+ L I R E ++ IA W+ L Q
Sbjct: 69 CQLEINFNTLQTKLR-----ISNRPAFMPSEG--KMVSDIAGAWQRLEQAEKGYEEWLLN 121
Query: 784 --KTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLV 841
+ E+ L E +Q+ A + G+ + LL + L V+ L++KH+
Sbjct: 122 EIRRLERLEHLAEKFRQK----ASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAF 177
Query: 842 EADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEA 901
E+D+ AH DR++ + A L + DA ++ ++ Q I ++++R+ L R+ L
Sbjct: 178 ESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERM 237
Query: 902 -------NTLH-QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELA- 952
+ LH +F + A +W++ + + +Q+L H++ +A L
Sbjct: 238 EKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPE 297
Query: 953 --SHQPAIQNVQETGEKLMDVSNLGV----PEIEQRLKLLNQAWSELKQLAANRGQKLDE 1006
+ +I +Q EK++ N+ + P + L W ++KQL R Q L E
Sbjct: 298 ADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQE 357
Query: 1007 SLTYQH--------FLAKVEEEEAWISEK 1027
L QH F A+ WI K
Sbjct: 358 ELARQHANERLRRQFAAQANAIGPWIQNK 386
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 157/324 (48%), Gaps = 37/324 (11%)
Query: 452 EALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFE- 510
E L+E+ RL S+ L+ R +EN EK A ++ +D + + KH+ + E
Sbjct: 10 ERLMEEYERLA-SELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEK 68
Query: 511 AELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKE 570
+L N + +Q+ L I R E ++ IA W+ L Q EK +
Sbjct: 69 CQLEINFNTLQTKLR-----ISNRPAFMPSEG--KMVSDIAGAWQRLEQ--AEKGYEEWL 119
Query: 571 ANKQRTYIAAVKDLPYFSKKDCEQA---ENWMSAREAFLNAEEVDSKT-DNVEALIKKHE 626
N+ I ++ L + ++K ++A E W +E L ++ +S + V AL++KHE
Sbjct: 120 LNE----IRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHE 175
Query: 627 DFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLL-------KEALI 679
F+ + AH++++ + +A +L D++ A ++D+ +++ D+W L +EAL
Sbjct: 176 AFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL- 234
Query: 680 EKRSRLGES--QTLQQFSRDADEMENWI---AEKLQ-LATEESYKDPANIQSKHQKHQAF 733
E+ +L E+ Q +F++ A NW+ E LQ + S ++ IQS H+ F
Sbjct: 235 ERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEE---IQSLITAHEQF 291
Query: 734 EAELAANADRIQSVLAMGQNLIDK 757
+A L QS++A+ QN ++K
Sbjct: 292 KATLPEADGERQSIMAI-QNEVEK 314
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 19/191 (9%)
Query: 357 LDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKT-DNVEALIKKHEDFDKAINAHEEKI 415
L++ F + E W +E L ++ +S + V AL++KHE F+ + AH++++
Sbjct: 129 LEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRV 188
Query: 416 GALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLL-------KEALIEKRSRLGES--QT 466
+ +A +L D++ A ++D+ +++ D+W L +EAL E+ +L E+ Q
Sbjct: 189 EQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL-ERMEKLLETIDQL 247
Query: 467 LQQFSRDADEMENWI---AEKLQ-LATEESYKDPANIQSKHQKHQAFEAELAANADRIQS 522
+F++ A NW+ E LQ + S ++ IQS H+ F+A L QS
Sbjct: 248 HLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEE---IQSLITAHEQFKATLPEADGERQS 304
Query: 523 VLAMGQNLIDK 533
++A+ QN ++K
Sbjct: 305 IMAI-QNEVEK 314
Score = 37.4 bits (85), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 39 ELWLSEIEGQLMSEDY-GKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLE 94
E W E L+ +DY LT V+ L +KH E+D+A+H DR+E + A ++ E
Sbjct: 144 ETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNE 200
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 304 FKRDADELESWIYEKLQAASDESYKET--TNLQAKIQKHQAFEAEVAAHSNAI 354
F++ A E+W Y K Q + Y+ T ++A ++KH+AFE+++AAH + +
Sbjct: 136 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRV 188
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/68 (77%), Positives = 58/68 (85%)
Query: 143 DVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK+
Sbjct: 13 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72
Query: 203 EAGLTASQ 210
A + Q
Sbjct: 73 AAAWSHPQ 80
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 57/62 (91%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured At
Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 57/62 (91%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 57/62 (91%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPA+YVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 57/62 (91%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQG+VPAAYVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGYVPAAYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSP EV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 55/61 (90%)
Query: 143 DVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEV DRQGFVPAAYVKK+
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYVKKL 61
Query: 203 E 203
+
Sbjct: 62 D 62
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSP EV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Hexagonal Crystal Obtained In Sodium Formate At
Ph 6.5
Length = 62
Score = 111 bits (277), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSP EV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 55/61 (90%)
Query: 143 DVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEV DRQGFVPAAYVKK+
Sbjct: 2 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVADRQGFVPAAYVKKL 61
Query: 203 E 203
+
Sbjct: 62 D 62
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 55/62 (88%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWK EVN RQGFVPAAYVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ LYDY EKSPREV++KK D+LTLLNS NKDWWK+EVNDRQGFVPAAY+KK
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l Mutant
Length = 62
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ LYDY EKSPRE+++KK D+LTLLNS NKDWWKVEVNDRQGF+PAAY+KK
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWWKVEVNDRQGFIPAAYLKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ LYDY EKSPRE+++KK D+LTLLNS NKDWWK+EVNDRQGFVPAAY+KK
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNDRQGFVPAAYLKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l Mutant
Length = 62
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ LYDY EKSPREV++KK D+LTLLNS NKDWWKVEV+DRQGF+PAAY+KK
Sbjct: 1 MDETGKELVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWWKVEVDDRQGFIPAAYLKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 147 KECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
KE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVN RQGFVPAAYVKK++
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNGRQGFVPAAYVKKLD 57
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 105 bits (263), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK++
Sbjct: 3 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 55/62 (88%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ LYDY EKSPRE+++KK D+LTLLNS NKDWWK+EVN RQGFVPAAY+KK
Sbjct: 1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3
Domain. Crystal Obtained In Ammonium Sulphate At Ph 7
Length = 57
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 52/57 (91%)
Query: 147 KECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
KE V+ALYDY EKSP EV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK++
Sbjct: 1 KELVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 104 bits (259), Expect = 5e-22, Method: Composition-based stats.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPA YVKK
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAGYVKK 60
Query: 202 ME 203
++
Sbjct: 61 LD 62
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 103 bits (257), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 8/70 (11%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEV----ND----RQGF 193
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEV ND RQGF
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGF 60
Query: 194 VPAAYVKKME 203
VPAAYVKK++
Sbjct: 61 VPAAYVKKLD 70
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 49/70 (70%), Positives = 56/70 (80%), Gaps = 8/70 (11%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN--------DRQGF 193
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEV +RQGF
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGF 60
Query: 194 VPAAYVKKME 203
VPAAYVKK++
Sbjct: 61 VPAAYVKKLD 70
>pdb|3LBX|A Chain A, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 161
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 67/99 (67%)
Query: 262 KILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQA 321
K+LETA +IQERR++VL RY FK + +KLEDS Q FKRDAD+L WI EK+
Sbjct: 19 KVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNI 78
Query: 322 ASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 360
+D+SY++ TN+Q K QKHQ+ EAEV S + L+ T
Sbjct: 79 LTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKT 117
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 432 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 491
A+ I ++R++VL R++ KE + E+ +L +S LQ F RDAD++ WI EK+ + T++
Sbjct: 23 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 82
Query: 492 SYKDPANIQSKHQKHQAFEAELAANADRIQSVL 524
SY+DP NIQ K+QKHQ+ EAE+ + R+ S L
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKS-RLMSEL 114
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 656 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 715
A+ I ++R++VL R++ KE + E+ +L +S LQ F RDAD++ WI EK+ + T++
Sbjct: 23 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 82
Query: 716 SYKDPANIQSKHQKHQAFEAELAANADRIQSVL 748
SY+DP NIQ K+QKHQ+ EAE+ + R+ S L
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKS-RLMSEL 114
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 870 ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDD 929
A IQE+RQ + RY+ K A R +L ++ L F RD D WI EK ++
Sbjct: 24 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS 83
Query: 930 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 966
Y D T +Q +KH+ LEAE+ + + +++T E
Sbjct: 84 Y-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE 119
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 956 PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLA 1015
P V+ +G K+++ + EI++R + + + K+ A RGQKL++S Q F
Sbjct: 8 PKETVVESSGPKVLETAE----EIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR 63
Query: 1016 KVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETD 1056
++ WI EK +L+ + Y D +QG +KH + E +
Sbjct: 64 DADDLGKWIMEKVNILTDKSYEDP-TNIQGKYQKHQSLEAE 103
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 765 EAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDS 824
E +Q R + +++ ++ E+ KL+++ + + DL W+ E ++LT + S
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILT-DKS 83
Query: 825 GKDLASVQNLIKKHQLVEADIQA 847
+D ++Q +KHQ +EA++Q
Sbjct: 84 YEDPTNIQGKYQKHQSLEAEVQT 106
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 2 EQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSV 61
++++ ++S ++G KL+++ Q F R +D+ W+ E L + Y +D T++
Sbjct: 32 QEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSY-EDPTNI 90
Query: 62 QNLQKKHALLEADVAS 77
Q +KH LEA+V +
Sbjct: 91 QGKYQKHQSLEAEVQT 106
>pdb|1OWA|A Chain A, Solution Structural Studies On Human Erythrocyte Alpha
Spectrin N Terminal Tetramerization Domain
Length = 156
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 67/99 (67%)
Query: 262 KILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQA 321
K+LETA +IQERR++VL RY FK + +KLEDS Q FKRDAD+L WI EK+
Sbjct: 16 KVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNI 75
Query: 322 ASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 360
+D+SY++ TN+Q K QKHQ+ EAEV S + L+ T
Sbjct: 76 LTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKT 114
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 432 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 491
A+ I ++R++VL R++ KE + E+ +L +S LQ F RDAD++ WI EK+ + T++
Sbjct: 20 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 79
Query: 492 SYKDPANIQSKHQKHQAFEAELAANADRIQSVL 524
SY+DP NIQ K+QKHQ+ EAE+ + R+ S L
Sbjct: 80 SYEDPTNIQGKYQKHQSLEAEVQTKS-RLMSEL 111
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
Query: 656 AAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEE 715
A+ I ++R++VL R++ KE + E+ +L +S LQ F RDAD++ WI EK+ + T++
Sbjct: 20 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 79
Query: 716 SYKDPANIQSKHQKHQAFEAELAANADRIQSVL 748
SY+DP NIQ K+QKHQ+ EAE+ + R+ S L
Sbjct: 80 SYEDPTNIQGKYQKHQSLEAEVQTKS-RLMSEL 111
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 870 ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDD 929
A IQE+RQ + RY+ K A R +L ++ L F RD D WI EK ++
Sbjct: 21 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS 80
Query: 930 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 966
Y D T +Q +KH+ LEAE+ + + +++T E
Sbjct: 81 Y-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTRE 116
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 956 PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLA 1015
P V+ +G K+++ + EI++R + + + K+ A RGQKL++S Q F
Sbjct: 5 PKETVVESSGPKVLETAE----EIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKR 60
Query: 1016 KVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETD 1056
++ WI EK +L+ + Y D +QG +KH + E +
Sbjct: 61 DADDLGKWIMEKVNILTDKSYEDP-TNIQGKYQKHQSLEAE 100
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 765 EAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDS 824
E +Q R + +++ ++ E+ KL+++ + + DL W+ E ++LT + S
Sbjct: 22 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILT-DKS 80
Query: 825 GKDLASVQNLIKKHQLVEADIQA 847
+D ++Q +KHQ +EA++Q
Sbjct: 81 YEDPTNIQGKYQKHQSLEAEVQT 103
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 2 EQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSV 61
++++ ++S ++G KL+++ Q F R +D+ W+ E L + Y +D T++
Sbjct: 29 QEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSY-EDPTNI 87
Query: 62 QNLQKKHALLEADVAS 77
Q +KH LEA+V +
Sbjct: 88 QGKYQKHQSLEAEVQT 103
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 100 bits (248), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 50/57 (87%)
Query: 147 KECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
KE V+ALYDY EK EV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK++
Sbjct: 1 KELVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 57
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 95.1 bits (235), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/70 (70%), Positives = 56/70 (80%), Gaps = 8/70 (11%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN--------DRQGF 193
+D TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEV +RQGF
Sbjct: 1 MDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGF 60
Query: 194 VPAAYVKKME 203
VPAAYVKK++
Sbjct: 61 VPAAYVKKLD 70
>pdb|3KBU|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
pdb|3KBU|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
Length = 326
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 3/322 (0%)
Query: 795 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 854
AN+ + Y + + W+GE E + S++ KD ++K+H + ++ + IK
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQ 62
Query: 855 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 914
+ +A L+ +G + I + +++ Y +K++A R+ +L L Q R+ D
Sbjct: 63 LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDL 122
Query: 915 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQNVQETGEKLMDVSN 973
E WI EK+L+ S + G+D V L+ K + E + Q + NV E+L+D +
Sbjct: 123 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGH 182
Query: 974 LGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSV 1033
I + LN+ W++L +L R Q L S + E I EK + L
Sbjct: 183 SEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP- 241
Query: 1034 EDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHHADSITQRCQQL 1092
ED G + + + H AFE D + + +L A A++I + Q++
Sbjct: 242 EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEV 301
Query: 1093 QLKLDNLMALATKRKTKLMDNS 1114
L+ R+T+L+D +
Sbjct: 302 SAAWQALLDACAGRRTQLVDTA 323
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 16/332 (4%)
Query: 901 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 960
AN Q++ D + E+WI E++L V SD+ +D G + K+H R + + + +N
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYG---RN 59
Query: 961 VQETGEKLMDVSNLGVPEIEQRLKLLNQA---WSELKQLAANRGQKLDESLTYQHFLAKV 1017
+++ + + + G PE EQ ++L Q ++ LK +A R +KL+ Y F K
Sbjct: 60 IKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLEN--MYHLFQLKR 117
Query: 1018 EEE--EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKL 1074
E + E WISEK+ + S + G V L K F + ++ ++R ++ + +L
Sbjct: 118 ETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL 177
Query: 1075 IEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKE 1134
I+A + A +I + L +L+ L R L + ++ + + I +K
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH 237
Query: 1135 THVKSEEYGRDLSTVQTLLTKQETFDAGLH--AFEHEGIQNITTLKDQLVASNHDQTPAI 1192
+ E+ G D ST ++ F+ +H + + Q++ T A ++ AI
Sbjct: 238 REL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAG--EKAEAI 294
Query: 1193 VKRHGDVIARWQKLLGDSNARKQRLLRMQEQF 1224
+ +V A WQ LL R+ +L+ ++F
Sbjct: 295 QNKEQEVSAAWQALLDACAGRRTQLVDTADKF 326
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 21/332 (6%)
Query: 359 NTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGAL 418
N +Y D ++AE W+ +E ++ ++E+ + ++K+H +A+ + I L
Sbjct: 4 NEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQL 63
Query: 419 QTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEME 478
+ A L++A H + I + QV + LK+ E++ +L L Q R+ D++E
Sbjct: 64 ASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLE 123
Query: 479 NWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVLAMGQNLIDKRQC 536
WI+EK L ++ E +D ++ K + F E A +R+ +V A + LID
Sbjct: 124 QWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID---- 179
Query: 537 VGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQAE 596
G EA A+IA +W+ + L+L + Q +AA DL + E
Sbjct: 180 AGHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDLHRYFYTGAE-IL 230
Query: 597 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 656
+ + L E+V E+ + H F++ ++ ++ Q +A +L A YA
Sbjct: 231 GLIDEKHREL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA--YA 287
Query: 657 ---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 685
A+ I +K ++V W+ L +A +R++L
Sbjct: 288 GEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 319
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 149/320 (46%), Gaps = 24/320 (7%)
Query: 591 DCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 650
D ++AE W+ +E ++ ++E+ + ++K+H +A+ + I L + A L+
Sbjct: 12 DADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLL 71
Query: 651 AADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK-L 709
+A H + I + QV + LK+ E++ +L L Q R+ D++E WI+EK L
Sbjct: 72 SAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWISEKEL 131
Query: 710 QLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVLAMGQNLIDKRQCVGSEEAVQ 768
++ E +D ++ K + F E A +R+ +V A + LID G EA
Sbjct: 132 VASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID----AGHSEA-- 185
Query: 769 ARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD--FWLG-EVESLL------ 819
A+IA +W+ + L+L + Q +AA DL F+ G E+ L+
Sbjct: 186 ---ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDLHRYFYTGAEILGLIDEKHRE 239
Query: 820 TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD-ASSIQEKRQ 878
ED G D ++ ++ + H E D+ +++ A L + + A +IQ K Q
Sbjct: 240 LPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQ 299
Query: 879 SINERYERIKNLAAHRQARL 898
++ ++ + + A R+ +L
Sbjct: 300 EVSAAWQALLDACAGRRTQL 319
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 137/323 (42%), Gaps = 20/323 (6%)
Query: 692 QQFSRDADEMENWIAEK-LQLATEESYKDPAN---IQSKHQKHQAFEAELAAN----ADR 743
QQ+ DADE E WI E+ L + ++E KD + +H + Q + N A R
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASR 66
Query: 744 IQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIA 803
Q +L+ G + Q + + V A + D E+ KL+
Sbjct: 67 AQGLLSAGHP--EGEQIIRLQGQVDKHYAGLKD-------VACERKRKLENMYHLFQLKR 117
Query: 804 AVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQADSL 862
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N + L
Sbjct: 118 ETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL 177
Query: 863 IDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKK 922
ID+G +A++I E + +NE + + L R L + LH++F A+ I EK
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH 237
Query: 923 LLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIEQ 981
+ +D G D + ++ + H E ++ +Q Q+ +L + I+
Sbjct: 238 REL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQN 296
Query: 982 RLKLLNQAWSELKQLAANRGQKL 1004
+ + ++ AW L A R +L
Sbjct: 297 KEQEVSAAWQALLDACAGRRTQL 319
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 85/237 (35%), Gaps = 63/237 (26%)
Query: 276 QVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEK-LQAASDESYKETTNLQ 334
QV YA K A ++ KLE+ KR+ D+LE WI EK L A+S E
Sbjct: 87 QVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPE--------- 137
Query: 335 AKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNV 394
G DF D+V
Sbjct: 138 -------------------------MGQDF---------------------------DHV 145
Query: 395 EALIKKHEDFDKAINA-HEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEA 453
L K DF + A +E++ + ++LI A H A I + + + + W L E
Sbjct: 146 TLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLEL 205
Query: 454 LIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFE 510
+ + L S L ++ E+ I EK + E+ D + +S H+ H AFE
Sbjct: 206 IDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 262
>pdb|3KBT|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBT|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
Length = 326
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 143/322 (44%), Gaps = 3/322 (0%)
Query: 795 ANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKD 854
AN+ + Y + + W+GE E + S++ KD ++K+H + ++ + IK
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQ 62
Query: 855 MNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 914
+ +A L+ +G + I + +++ Y +K++A R+ +L L Q R+ D
Sbjct: 63 LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDL 122
Query: 915 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQNVQETGEKLMDVSN 973
E WI EK+L+ S + G+D V L+ K + E + Q + NV E+L+D +
Sbjct: 123 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGH 182
Query: 974 LGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSV 1033
I + LN+ W++L +L R Q L S + E I EK + L
Sbjct: 183 SEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP- 241
Query: 1034 EDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHHADSITQRCQQL 1092
ED G + + + H AFE D + + +L A A++I + Q++
Sbjct: 242 EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEV 301
Query: 1093 QLKLDNLMALATKRKTKLMDNS 1114
L+ R+T+L+D +
Sbjct: 302 SAAWQALLDACAGRRTQLVDTA 323
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 152/332 (45%), Gaps = 16/332 (4%)
Query: 901 ANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQN 960
AN Q++ D + E+WI E++L V SD+ +D G + K+H R + + + +N
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYG---RN 59
Query: 961 VQETGEKLMDVSNLGVPEIEQRLKLLNQA---WSELKQLAANRGQKLDESLTYQHFLAKV 1017
+++ + + + G PE EQ ++L Q ++ LK +A R +KL+ Y F K
Sbjct: 60 IKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLEN--MYHLFQLKR 117
Query: 1018 EEE--EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKL 1074
E + E WISEK+ + S + G V L K F + ++ ++R ++ + +L
Sbjct: 118 ETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL 177
Query: 1075 IEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKE 1134
I+A + A +I + L +L+ L R L + ++ + + I +K
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH 237
Query: 1135 THVKSEEYGRDLSTVQTLLTKQETFDAGLH--AFEHEGIQNITTLKDQLVASNHDQTPAI 1192
+ E+ G D ST ++ F+ +H + + Q++ T A ++ AI
Sbjct: 238 REL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAG--EKAEAI 294
Query: 1193 VKRHGDVIARWQKLLGDSNARKQRLLRMQEQF 1224
+ +V A WQ LL R+ +L+ ++F
Sbjct: 295 QNKEQEVSAAWQALLDACAGRRTQLVDTADKF 326
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 153/332 (46%), Gaps = 21/332 (6%)
Query: 359 NTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGAL 418
N +Y D ++AE W+ +E ++ ++E+ + ++K+H +A+ + I L
Sbjct: 4 NEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQL 63
Query: 419 QTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEME 478
+ A L++A H + I + QV + LK+ E++ +L L Q R+ D++E
Sbjct: 64 ASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLE 123
Query: 479 NWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVLAMGQNLIDKRQC 536
WI+EK L ++ E +D ++ K + F E A +R+ +V A + LID
Sbjct: 124 QWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID---- 179
Query: 537 VGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQAE 596
G EA A+IA +W+ + L+L + Q +AA DL + E
Sbjct: 180 AGHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDLHRYFYTGAE-IL 230
Query: 597 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 656
+ + L E+V E+ + H F++ ++ ++ Q +A +L A YA
Sbjct: 231 GLIDEKHREL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA--YA 287
Query: 657 ---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 685
A+ I +K ++V W+ L +A +R++L
Sbjct: 288 GEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 319
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 149/320 (46%), Gaps = 24/320 (7%)
Query: 591 DCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 650
D ++AE W+ +E ++ ++E+ + ++K+H +A+ + I L + A L+
Sbjct: 12 DADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLL 71
Query: 651 AADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK-L 709
+A H + I + QV + LK+ E++ +L L Q R+ D++E WI+EK L
Sbjct: 72 SAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKEL 131
Query: 710 QLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVLAMGQNLIDKRQCVGSEEAVQ 768
++ E +D ++ K + F E A +R+ +V A + LID G EA
Sbjct: 132 VASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLID----AGHSEA-- 185
Query: 769 ARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLD--FWLG-EVESLL------ 819
A+IA +W+ + L+L + Q +AA DL F+ G E+ L+
Sbjct: 186 ---ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDLHRYFYTGAEILGLIDEKHRE 239
Query: 820 TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFD-ASSIQEKRQ 878
ED G D ++ ++ + H E D+ +++ A L + + A +IQ K Q
Sbjct: 240 LPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQ 299
Query: 879 SINERYERIKNLAAHRQARL 898
++ ++ + + A R+ +L
Sbjct: 300 EVSAAWQALLDACAGRRTQL 319
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 138/323 (42%), Gaps = 20/323 (6%)
Query: 692 QQFSRDADEMENWIAEK-LQLATEESYKDPAN---IQSKHQKHQAFEAELAAN----ADR 743
QQ+ DADE E WI E+ L + ++E KD + +H + Q + N A R
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASR 66
Query: 744 IQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIA 803
Q +L+ G + Q + + V A + D E E+ KL+
Sbjct: 67 AQGLLSAGHP--EGEQIIRLQGQVDKHYAGLKDVAE-------ERKRKLENMYHLFQLKR 117
Query: 804 AVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQADSL 862
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N + L
Sbjct: 118 ETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERL 177
Query: 863 IDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKK 922
ID+G +A++I E + +NE + + L R L + LH++F A+ I EK
Sbjct: 178 IDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKH 237
Query: 923 LLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIEQ 981
+ +D G D + ++ + H E ++ +Q Q+ +L + I+
Sbjct: 238 REL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQN 296
Query: 982 RLKLLNQAWSELKQLAANRGQKL 1004
+ + ++ AW L A R +L
Sbjct: 297 KEQEVSAAWQALLDACAGRRTQL 319
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 85/237 (35%), Gaps = 63/237 (26%)
Query: 276 QVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEK-LQAASDESYKETTNLQ 334
QV YA K A ++ KLE+ KR+ D+LE WI EK L A+S E
Sbjct: 87 QVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPE--------- 137
Query: 335 AKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNV 394
G DF D+V
Sbjct: 138 -------------------------MGQDF---------------------------DHV 145
Query: 395 EALIKKHEDFDKAINA-HEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEA 453
L K DF + A +E++ + ++LI A H A I + + + + W L E
Sbjct: 146 TLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLEL 205
Query: 454 LIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFE 510
+ + L S L ++ E+ I EK + E+ D + +S H+ H AFE
Sbjct: 206 IDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFE 262
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of Spectrin
Sh3
Length = 65
Score = 89.7 bits (221), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/65 (70%), Positives = 52/65 (80%), Gaps = 8/65 (12%)
Query: 147 KECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN--------DRQGFVPAAY 198
KE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEV +RQGFVPAAY
Sbjct: 1 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAY 60
Query: 199 VKKME 203
VKK++
Sbjct: 61 VKKLD 65
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 86.3 bits (212), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/44 (84%), Positives = 42/44 (95%)
Query: 162 REVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAG 205
REV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK+++G
Sbjct: 14 REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 57
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 145 TGKECVIALYDYTEKS 160
TGKE V+ALYDY EKS
Sbjct: 58 TGKELVLALYDYQEKS 73
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 86.3 bits (212), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/45 (84%), Positives = 43/45 (95%)
Query: 161 PREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAG 205
PREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK+++G
Sbjct: 5 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 49
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At S19-P20
Length = 63
Score = 85.1 bits (209), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/45 (84%), Positives = 43/45 (95%)
Query: 161 PREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAG 205
PREV+MKK D+LTLLNS NKDWWKVEVNDRQGFVPAAYVKK+++G
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG 47
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 145/298 (48%), Gaps = 8/298 (2%)
Query: 590 KDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAI-NAHEEKIGALQTLADQ 648
++ + E W++ RE + E+ ++V L ++ +F + N +E++ + LAD+
Sbjct: 13 REVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADE 72
Query: 649 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSR-LGESQTLQQFSRDADEMENWIAE 707
LI + H A I + + + + W L E LI+ R++ L S L +F DA E+ I +
Sbjct: 73 LINSGHSDAATIAEWKDGLNEAWADLLE-LIDTRTQILAASYELHKFYHDAKEIFGRIQD 131
Query: 708 KLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEA- 766
K + EE +D +++ + H FE ++ A +++ + L + ++A
Sbjct: 132 KHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARL---QAAYAGDKAD 188
Query: 767 -VQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSG 825
+Q R + + W+ L + ++L + + + + V+DL W+ +V + +++
Sbjct: 189 DIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKP 248
Query: 826 KDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINER 883
+D++SV+ L+ HQ ++A+I A +D SL+ + + I+EK + E+
Sbjct: 249 RDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEK 306
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 143/317 (45%), Gaps = 26/317 (8%)
Query: 366 RDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAI-NAHEEKIGALQTLADQ 424
R+ + E W++ RE + E+ ++V L ++ +F + N +E++ + LAD+
Sbjct: 13 REVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADE 72
Query: 425 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSR-LGESQTLQQFSRDADEMENWIAE 483
LI + H A I + + + + W L E LI+ R++ L S L +F DA E+ I +
Sbjct: 73 LINSGHSDAATIAEWKDGLNEAWADLLE-LIDTRTQILAASYELHKFYHDAKEIFGRIQD 131
Query: 484 KLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEA- 542
K + EE +D +++ + H FE ++ A +++ + L + ++A
Sbjct: 132 KHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARL---QAAYAGDKAD 188
Query: 543 -VQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQAENWMSA 601
+Q R + + W+ L + ++L + + + + V+DL WM
Sbjct: 189 DIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLML-----------WMED 237
Query: 602 REAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPI- 660
+ A+E +VE L+ H+ I+A + L L+A HYA++ I
Sbjct: 238 VIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIK 297
Query: 661 ------DDKRKQVLDRW 671
+KRK+++D+W
Sbjct: 298 EKLLQLTEKRKEMIDKW 314
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 134/292 (45%), Gaps = 7/292 (2%)
Query: 805 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADI-QAHDDRIKDMNGQADSLI 863
V DL+ W+ E E + S + G+D V L ++ + D +R+ +N AD LI
Sbjct: 15 VDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELI 74
Query: 864 DSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWI--KEK 921
+SG DA++I E + +NE + + L R L + LH+F+ D + I K K
Sbjct: 75 NSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHK 134
Query: 922 KLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIE 980
KL ++ GRD V+ L++ H E ++ + ++ +QE +L + +I+
Sbjct: 135 KL---PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQ 191
Query: 981 QRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTM 1040
+R + +AW L +R +L ++ F + V + W+ + + + ++ +
Sbjct: 192 KRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDV 251
Query: 1041 AAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQL 1092
++V+ L+ H + + D G L+ K++ ++ I ++ QL
Sbjct: 252 SSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQL 303
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 124/285 (43%), Gaps = 4/285 (1%)
Query: 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQNVQ 962
L Q R++ D E WI E++++ GS + G+D V L+++ + + + Q + V
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 963 ETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 1022
++L++ + I + LN+AW++L +L R Q L S F +E
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFG 127
Query: 1023 WISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHH 1081
I +K + L E+ G V+ L + H FE D + + +L A
Sbjct: 128 RIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDK 186
Query: 1082 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEE 1141
AD I +R ++ +L+ R+ +L+D +F + W+ D ++++E
Sbjct: 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQE 246
Query: 1142 YGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNH 1186
RD+S+V+ L+ + A + A ++ L L+A H
Sbjct: 247 KPRDVSSVELLMNNHQGIKAEIDA-RNDSFTTCIELGKSLLARKH 290
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 156/340 (45%), Gaps = 51/340 (15%)
Query: 467 LQQFSRDADEMENWIAEKLQLA-TEESYKDPANIQSKHQKHQAFEAELA-ANADRIQSVL 524
L Q +R+ D++E WIAE+ +A + E +D ++ ++ + F + +R+ +V
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 525 AMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDL 584
+ LI+ G +A A+IA +W+ + L+L + Q +AA +L
Sbjct: 68 HLADELINS----GHSDA-----ATIA-EWKDGLNEAWADLLELIDTRTQ--ILAASYEL 115
Query: 585 PYFSKKDCEQAENWMSAREAFLN--------AEEVDSKTDNVEALIKKHEDFDKAINAHE 636
F + A+E F EE+ + VE L + H F+ I A
Sbjct: 116 HKF----------YHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALG 165
Query: 637 EKIGALQTLADQLIAADHYAAKPIDDKRK---QVLDRWRLLKEALIEKRSRLGESQTLQQ 693
++ LQ A +L AA YA DD +K +VL+ W+ L +A +R RL ++ +
Sbjct: 166 TQVRQLQEDAARLQAA--YAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFR 223
Query: 694 FSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQ 752
F ++ W+ + + Q+ +E +D ++++ HQ +AE+ A D + + +G+
Sbjct: 224 FFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGK 283
Query: 753 NLIDKRQCVGSEEAVQARLASIA-----------DQWEFL 781
+L+ R+ SEE ++ +L + D+WE+L
Sbjct: 284 SLL-ARKHYASEE-IKEKLLQLTEKRKEMIDKWEDRWEWL 321
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 145/315 (46%), Gaps = 24/315 (7%)
Query: 691 LQQFSRDADEMENWIAEKLQLA-TEESYKDPANIQSKHQKHQAFEAELA-ANADRIQSVL 748
L Q +R+ D++E WIAE+ +A + E +D ++ ++ + F + +R+ +V
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 749 AMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDL 808
+ LI+ G +A A+IA +W+ + L+L + Q +AA +L
Sbjct: 68 HLADELINS----GHSDA-----ATIA-EWKDGLNEAWADLLELIDTRTQ--ILAASYEL 115
Query: 809 DFWLGEVESLLT---------SEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQA 859
+ + + + E+ G+D +V+ L + H E DIQA +++ + A
Sbjct: 116 HKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDA 175
Query: 860 DSLIDSGQFD-ASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWI 918
L + D A IQ++ + E ++ + + R+ RL + +FF + D W+
Sbjct: 176 ARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWM 235
Query: 919 KEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPE 978
++ + + + RD++ V+ L H+ ++AE+ + + E G+ L+ + E
Sbjct: 236 EDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEE 295
Query: 979 IEQRLKLLNQAWSEL 993
I+++L L + E+
Sbjct: 296 IKEKLLQLTEKRKEM 310
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 138/321 (42%), Gaps = 68/321 (21%)
Query: 299 RRFQYFKRDADELESWIYEK-LQAASDE---SYKETTNLQAKIQK--------------- 339
R FQ R+ D+LE WI E+ + A S E Y+ T LQ + ++
Sbjct: 7 RLFQ-LNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDT 65
Query: 340 --HQAFEAEVAAHSNAIVV------LDNTGND--------------------FYRDCEQA 371
H A E + HS+A + L+ D FY D ++
Sbjct: 66 VNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEI 125
Query: 372 ENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHY 431
+ + L EE+ + VE L + H F+ I A ++ LQ A +L AA Y
Sbjct: 126 FGRIQDKHKKL-PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAA--Y 182
Query: 432 AAKPIDDKRK---QVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKL-QL 487
A DD +K +VL+ W+ L +A +R RL ++ +F ++ W+ + + Q+
Sbjct: 183 AGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQI 242
Query: 488 ATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARL 547
+E +D ++++ HQ +AE+ A D + + +G++L+ R+ SEE ++ +L
Sbjct: 243 EAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLL-ARKHYASEE-IKEKL 300
Query: 548 ASIA-----------DQWEFL 557
+ D+WE+L
Sbjct: 301 LQLTEKRKEMIDKWEDRWEWL 321
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 109/248 (43%), Gaps = 24/248 (9%)
Query: 1016 KVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKL 1074
+V++ E WI+E++ + + G V L ++ F D ++ ++R + ++L
Sbjct: 14 EVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADEL 73
Query: 1075 IEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKE 1134
I + + A +I + L +L+ L R L + +F A + I DK
Sbjct: 74 INSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKH 133
Query: 1135 THVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQL--------VASNH 1186
+ EE GRD +TV+TL TF EH+ IQ + T QL A
Sbjct: 134 KKL-PEELGRDQNTVETLQRMHTTF-------EHD-IQALGTQVRQLQEDAARLQAAYAG 184
Query: 1187 DQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFR---QIEDLYLTF---AKKASS 1240
D+ I KR +V+ W+ LL +R+ RL+ ++FR + DL L ++ +
Sbjct: 185 DKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEA 244
Query: 1241 FNKPQPLS 1248
KP+ +S
Sbjct: 245 QEKPRDVS 252
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
Query: 1122 KADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQL 1181
+ D +E WIA++E S E G+D V L + F E + + L D+L
Sbjct: 14 EVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADEL 73
Query: 1182 VASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSF 1241
+ S H I + + W LL + R Q L E + D F +
Sbjct: 74 INSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKH 133
Query: 1242 NK-PQPLSRD 1250
K P+ L RD
Sbjct: 134 KKLPEELGRD 143
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 3 QIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQ 62
+++ W+SL A E + +L + + F + D+ LW+ ++ Q+ +++ +D++SV+
Sbjct: 196 EVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVE 255
Query: 63 NLQKKHALLEADVASHLDRIESVKAATEQFL--EHYGKDE 100
L H ++A++ + D + + L +HY +E
Sbjct: 256 LLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEE 295
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 267 ANDIQERREQVLNRYADFKSEARSKREKLEDSR-RFQYFKRDADELESWIYEKL-QAASD 324
A+DIQ+R +VL + S+R +L D+ +F++F D L W+ + + Q +
Sbjct: 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRD-LMLWMEDVIRQIEAQ 245
Query: 325 ESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTG 361
E ++ ++++ + HQ +AE+ A +++ G
Sbjct: 246 EKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELG 282
>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
Spectrin
Length = 214
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 5/187 (2%)
Query: 907 FFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 966
F +D+ D ++W+ + V S+D L + L ++H ++ E+ HQ + Q V+E+GE
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 967 KLMDVSNLGVPE---IEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAW 1023
K+ + PE + QRL+ L+ W L ++ +R L + L +Q F ++ EA
Sbjct: 65 KV--IQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 1024 ISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHAD 1083
+S ++ L+ + D++ A + ++K + F +RD+ +GNKL+ N ++D
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 1084 SITQRCQ 1090
I ++ Q
Sbjct: 183 KIKEKVQ 189
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 69/150 (46%), Gaps = 1/150 (0%)
Query: 1011 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 1070
Q FL +++ +AW+S Q+ ++ ED +++ + LL++H + + H+D + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 1071 GNKLIEAK-NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESW 1129
G K+I+ + + + QR + L D L + R L + +F A E+
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 1130 IADKETHVKSEEYGRDLSTVQTLLTKQETF 1159
++++E + E L + + K E F
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDF 152
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 13/206 (6%)
Query: 468 QQFSRDADEMENWIA-EKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAM 526
Q F +D D+ + W++ + +A+E+ + + Q+H + E+ + D Q V
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 527 GQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPY 586
G+ +I + Q + RL + W+ L + +S L + + +
Sbjct: 63 GEKVI-QGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEF--------- 112
Query: 587 FSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLA 646
+KD +QAE +S +E L E + EA I+K EDF ++ + +K+ +
Sbjct: 113 --QKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSG 170
Query: 647 DQLIAADHYAAKPIDDKRKQVLDRWR 672
++L+A + + I +K + + DR R
Sbjct: 171 NKLVAEGNLYSDKIKEKVQLIEDRHR 196
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 28 QQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKA 87
+Q F + ++D + WLS + + SED + L + L ++HA ++ ++ H D + VK
Sbjct: 2 EQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 88 ATEQFLEHYGKDEDSSEALLKKHEALVSDLEAFG 121
+ E+ ++ G+ + L ++ E L + +A G
Sbjct: 62 SGEKVIQ--GQTDPEYLLLGQRLEGLDTGWDALG 93
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/191 (15%), Positives = 87/191 (45%), Gaps = 3/191 (1%)
Query: 798 QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNG 857
++ ++ + D WL + + SED + L + L+++H ++ +I H D + +
Sbjct: 2 EQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 858 QADSLIDSGQFDASS--IQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEE 915
+ +I GQ D + ++ + ++ ++ + + R L + +F +D E
Sbjct: 62 SGEKVI-QGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAE 120
Query: 916 SWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLG 975
+ + ++ + + L + +K + + +++ + + ++G KL+ NL
Sbjct: 121 AILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLY 180
Query: 976 VPEIEQRLKLL 986
+I+++++L+
Sbjct: 181 SDKIKEKVQLI 191
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 363 DFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLA 422
+F +D +QAE +S +E L E + EA I+K EDF ++ + +K+ +
Sbjct: 111 EFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSG 170
Query: 423 DQLIAADHYAAKPIDDKRKQVLDRWR 448
++L+A + + I +K + + DR R
Sbjct: 171 NKLVAEGNLYSDKIKEKVQLIEDRHR 196
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 73/170 (42%), Gaps = 2/170 (1%)
Query: 364 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLAD 423
F +D + + W+S + + +E++ E L+++H I+ H++ ++ +
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 424 QLIAADHYAAKPIDDKRKQVLDR-WRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIA 482
++I + +R + LD W L + L + Q+F +DA + E ++
Sbjct: 65 KVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILS 124
Query: 483 -EKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLI 531
++ LA E ++ +K + F + N D++ S + G L+
Sbjct: 125 NQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLV 174
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular Permutant,
Cut At N47-D48
Length = 62
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN 188
TGKE V+ALYDY EKSPREV+MKK D+LTLLNS NKDWWKVEVN
Sbjct: 19 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 62
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 189 DRQGFVPAAYVKKMEAG 205
DRQGFVPAAYVKK+++G
Sbjct: 2 DRQGFVPAAYVKKLDSG 18
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats From
Alpha-Actinin
Length = 250
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 45/269 (16%)
Query: 1118 QFMWKADVVESWIADKETHVKSEEY-GRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 1176
+F KA E+W KE + ++Y L+ V+ LL K E F++ L A + + ++ I
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQ-DRVEQIAA 76
Query: 1177 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAK 1236
+ +L ++ + R + +W +L + R++ L RM++ I+ L+L FAK
Sbjct: 77 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAK 136
Query: 1237 KASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWFENAEEDLTDPVRCNS 1296
+A+ F N+W E A EDL D +S
Sbjct: 137 RAAPF------------------------------------NNWMEGAMEDLQDMFIVHS 160
Query: 1297 IEEIRALREXXXXXXXXXXXXXXDFEALAALDQQ----IKSFNV---GPNPYTWFTMEAL 1349
IEEI++L + +++ A+ + I+S+N+ NPY+ TM+ L
Sbjct: 161 IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDEL 220
Query: 1350 EDTWRNLQKIIKERDIELAKEATRQDEND 1378
W +++++ RD L +E RQ N+
Sbjct: 221 RTKWDKVKQLVPIRDQSLQEELARQHANE 249
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 1013 FLAKVEEEEAWISEKQQLLSVEDY-GDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAG 1071
F K E W K+Q+L +DY ++ V+ LL+KH+AFE+D + H+DR I +
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 1072 NKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRK------TKLMD--NSAYLQFMWKA 1123
+L E H A ++ RCQ++ + D L L KR+ KL++ + +L+F +A
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRA 138
Query: 1124 DVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGL 1163
+W+ ++ + +Q+L+T E F A L
Sbjct: 139 APFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATL 178
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 27/221 (12%)
Query: 813 GEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASS 872
G+ + LL + L V+ L++KH+ E+D+ AH DR++ + A L + DA +
Sbjct: 32 GKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVN 91
Query: 873 IQEKRQSINERYERIKNLAAHRQARLNEA-------NTLH-QFFRDIADEESWIK----- 919
+ ++ Q I ++++R+ L R+ L + LH +F + A +W++
Sbjct: 92 VNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMED 151
Query: 920 -EKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELA---SHQPAIQNVQETGEKLMDVSNLG 975
+ +V S + +Q+L H++ +A L + +I +Q EK++ N+
Sbjct: 152 LQDMFIVHS------IEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIR 205
Query: 976 V----PEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQH 1012
+ P + L W ++KQL R Q L E L QH
Sbjct: 206 ISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQH 246
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 357 LDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKT-DNVEALIKKHEDFDKAINAHEEKI 415
L++ F + E W +E L ++ +S + V AL++KHE F+ + AH++++
Sbjct: 12 LEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRV 71
Query: 416 GALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLL-------KEALIEKRSRLGES--QT 466
+ +A +L D++ A ++D+ +++ D+W L +EAL E+ +L E+ Q
Sbjct: 72 EQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREAL-ERMEKLLETIDQL 130
Query: 467 LQQFSRDADEMENWIAEKLQ-LATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLA 525
+F++ A NW+ ++ L IQS H+ F+A L QS++A
Sbjct: 131 HLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMA 190
Query: 526 MGQNLIDK 533
+ QN ++K
Sbjct: 191 I-QNEVEK 197
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 596 ENWMSAREAFLNAEEVDSKT-DNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADH 654
E W +E L ++ +S + V AL++KHE F+ + AH++++ + +A +L D+
Sbjct: 27 ETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDY 86
Query: 655 YAAKPIDDKRKQVLDRWRLL-------KEALIEKRSRLGES--QTLQQFSRDADEMENWI 705
+ A ++D+ +++ D+W L +EAL E+ +L E+ Q +F++ A NW+
Sbjct: 87 HDAVNVNDRCQKICDQWDRLGTLTQKRREAL-ERMEKLLETIDQLHLEFAKRAAPFNNWM 145
Query: 706 AEKLQ-LATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDK 757
++ L IQS H+ F+A L QS++A+ QN ++K
Sbjct: 146 EGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAI-QNEVEK 197
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 39 ELWLSEIEGQLMSEDY-GKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLE 94
E W E L+ +DY LT V+ L +KH E+D+A+H DR+E + A ++ E
Sbjct: 27 ETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNE 83
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 304 FKRDADELESWIYEKLQAASDESYKET--TNLQAKIQKHQAFEAEVAAHSNAI 354
F++ A E+W Y K Q + Y+ T ++A ++KH+AFE+++AAH + +
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRV 71
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 185
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%)
Query: 801 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 860
+ + +DL W+ + + +++ +D++SV+ L+K HQ + A+I+ +
Sbjct: 9 FFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGE 68
Query: 861 SLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKE 920
SL+ + I+EK Q + R + + R RL + QF RD + E+W+
Sbjct: 69 SLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIA 128
Query: 921 KKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS 953
++ + S D+G + V+ L K+H+ E AS
Sbjct: 129 QEPYLASGDFGHTVDSVEKLIKRHEAFEKSTAS 161
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%)
Query: 906 QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETG 965
+FF D SW++ + + + RD++ V+ L K H+ + AE+ + E G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 966 EKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWIS 1025
E L+ + EI ++L+ + E+ + R ++L L F EAW+
Sbjct: 68 ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLI 127
Query: 1026 EKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADI 1067
++ L+ D+G T+ +V+ L+K+H+AFE + +R A +
Sbjct: 128 AQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAAL 169
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 26/182 (14%)
Query: 469 QFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMG 527
+F A ++ +W+ + Q+ T+E +D ++++ + HQ AE+ + + L +G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 528 QNLIDKRQCVGSEEA------VQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAV 581
++L+ +RQ SEE V +R + ++WE A +R + +
Sbjct: 68 ESLL-QRQHQASEEIREKLQQVMSRRKEMNEKWE---------------ARWER--LRML 109
Query: 582 KDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGA 641
++ FS+ D AE W+ A+E +L + + D+VE LIK+HE F+K+ + E+ A
Sbjct: 110 LEVCQFSR-DASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAA 168
Query: 642 LQ 643
L+
Sbjct: 169 LE 170
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 373 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 432
+WM + + +E +VE L+K H+ + I + A L + L+ H A
Sbjct: 18 SWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQA 77
Query: 433 AKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENW-IAEKLQLATEE 491
++ I +K +QV+ R + + E + RL + QFSRDA E W IA++ LA+ +
Sbjct: 78 SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGD 137
Query: 492 SYKDPANIQSKHQKHQAFEAELAANADRIQSV 523
+++ ++H+AFE A+ A+R ++
Sbjct: 138 FGHTVDSVEKLIKRHEAFEKSTASWAERFAAL 169
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 597 NWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYA 656
+WM + + +E +VE L+K H+ + I + A L + L+ H A
Sbjct: 18 SWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQA 77
Query: 657 AKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENW-IAEKLQLATEE 715
++ I +K +QV+ R + + E + RL + QFSRDA E W IA++ LA+ +
Sbjct: 78 SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGD 137
Query: 716 SYKDPANIQSKHQKHQAFEAELAANADRIQSV 747
+++ ++H+AFE A+ A+R ++
Sbjct: 138 FGHTVDSVEKLIKRHEAFEKSTASWAERFAAL 169
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 364 FYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQ 419
F RD AE W+ A+E +L + + D+VE LIK+HE F+K+ + E+ AL+
Sbjct: 115 FSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALE 170
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 81/167 (48%), Gaps = 15/167 (8%)
Query: 693 QFSRDADEMENWIAEKL-QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMG 751
+F A ++ +W+ + Q+ T+E +D ++++ + HQ AE+ + + L +G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 752 QNLIDKRQCVGSEEA------VQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAV 805
++L+ +RQ SEE V +R + ++WE ++ L++ Q + A+V
Sbjct: 68 ESLL-QRQHQASEEIREKLQQVMSRRKEMNEKWEARWER-----LRMLLEVCQFSRDASV 121
Query: 806 KDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRI 852
+ WL E L S D G + SV+ LIK+H+ E + +R
Sbjct: 122 AEA--WLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERF 166
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 56/121 (46%)
Query: 1040 MAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNL 1099
+++V+ L+K H + + G L++ ++ ++ I ++ QQ+ + +
Sbjct: 36 VSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEM 95
Query: 1100 MALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETF 1159
R +L QF A V E+W+ +E ++ S ++G + +V+ L+ + E F
Sbjct: 96 NEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAF 155
Query: 1160 D 1160
+
Sbjct: 156 E 156
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 31 FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAAT 89
F+R E WL E L S D+G + SV+ L K+H E AS +R +++ T
Sbjct: 115 FSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPT 173
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 265 ETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESW-IYEKLQAAS 323
+ + +I+E+ +QV++R + + ++ E+L F RDA E+W I ++ AS
Sbjct: 76 QASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLAS 135
Query: 324 DESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLD 358
+ +++ I++H+AFE A+ + L+
Sbjct: 136 GDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALE 170
>pdb|3F57|A Chain A, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
pdb|3F57|B Chain B, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
Length = 225
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 3/213 (1%)
Query: 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAEL-ASHQPAIQNVQ 962
L Q R+ D E WI EK+L+ S + G+D V L+ K + E A Q + NV
Sbjct: 10 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 69
Query: 963 ETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 1022
E+L+D + I + LN+ W++L +L R Q L S + E
Sbjct: 70 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 129
Query: 1023 WISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KNHH 1081
I EK + L ED G + + + H AFE D + + +L A
Sbjct: 130 LIDEKHRELP-EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEK 188
Query: 1082 ADSITQRCQQLQLKLDNLMALATKRKTKLMDNS 1114
A++I + Q++ L+ R+T+L+D +
Sbjct: 189 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTA 221
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 91/200 (45%), Gaps = 3/200 (1%)
Query: 807 DLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQADSLIDS 865
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N + LID+
Sbjct: 19 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDA 78
Query: 866 GQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLV 925
G +A++I E + +NE + + L R L + LH++F A+ I EK +
Sbjct: 79 GHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL 138
Query: 926 GSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIEQRLK 984
+D G D + ++ + H E ++ +Q Q+ +L + I+ + +
Sbjct: 139 -PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQ 197
Query: 985 LLNQAWSELKQLAANRGQKL 1004
++ AW L A R +L
Sbjct: 198 EVSAAWQALLDACAGRRTQL 217
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)
Query: 589 KKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQTLAD 647
K++ + E W+S +E ++ E+ D+V L K DF + A +E++ + +
Sbjct: 14 KRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIE 73
Query: 648 QLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAE 707
+LI A H A I + + + + W L E + + L S L ++ E+ I E
Sbjct: 74 RLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDE 133
Query: 708 KLQLATEESYKDPANIQSKHQKHQAFE 734
K + E+ D + +S H+ H AFE
Sbjct: 134 KHRELPEDVGLDASTAESFHRVHTAFE 160
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 1/146 (0%)
Query: 366 RDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQTLADQ 424
R+ + E W+S +E ++ E+ D+V L K DF + A +E++ + ++
Sbjct: 15 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 74
Query: 425 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK 484
LI A H A I + + + + W L E + + L S L ++ E+ I EK
Sbjct: 75 LIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEK 134
Query: 485 LQLATEESYKDPANIQSKHQKHQAFE 510
+ E+ D + +S H+ H AFE
Sbjct: 135 HRELPEDVGLDASTAESFHRVHTAFE 160
Score = 38.1 bits (87), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 6/208 (2%)
Query: 1021 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAF--ETDFSVHRDRCADICSAGNKLIEAK 1078
E WISEK+ + S + G V L K F ET ++ ++R ++ + +LI+A
Sbjct: 21 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETG-AIGQERVDNVNAFIERLIDAG 79
Query: 1079 NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVK 1138
+ A +I + L +L+ L R L + ++ + + I +K +
Sbjct: 80 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL- 138
Query: 1139 SEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQL-VASNHDQTPAIVKRHG 1197
E+ G D ST ++ F+ +H + +Q + +L A ++ AI +
Sbjct: 139 PEDVGLDASTAESFHRVHTAFERDVHLLGVQ-VQQFQDVATRLQTAYAGEKAEAIQNKEQ 197
Query: 1198 DVIARWQKLLGDSNARKQRLLRMQEQFR 1225
+V A WQ LL R+ +L+ ++FR
Sbjct: 198 EVSAAWQALLDACAGRRTQLVDTADKFR 225
Score = 37.7 bits (86), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%)
Query: 1117 LQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITT 1176
Q + D +E WI++KE S E G+D V L K F A E + N+
Sbjct: 11 FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNA 70
Query: 1177 LKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 1217
++L+ + H + I + + W LL + R Q L
Sbjct: 71 FIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL 111
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 691 LQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVL 748
L Q R+ D++E WI+EK L ++ E +D ++ K + F E A +R+ +V
Sbjct: 10 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 69
Query: 749 AMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDL 808
A + LID G EA A+IA +W+ + L+L + Q +AA DL
Sbjct: 70 AFIERLID----AGHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDL 117
Query: 809 D--FWLG-EVESLL------TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQA 859
F+ G E+ L+ ED G D ++ ++ + H E D+ +++ A
Sbjct: 118 HRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVA 177
Query: 860 DSL--IDSGQFDASSIQEKRQSINERYERIKNLAAHRQARL 898
L +G+ A +IQ K Q ++ ++ + + A R+ +L
Sbjct: 178 TRLQTAYAGE-KAEAIQNKEQEVSAAWQALLDACAGRRTQL 217
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 21/224 (9%)
Query: 467 LQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSVL 524
L Q R+ D++E WI+EK L ++ E +D ++ K + F E A +R+ +V
Sbjct: 10 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 69
Query: 525 AMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDL 584
A + LID G EA A+IA +W+ + L+L + Q +AA DL
Sbjct: 70 AFIERLID----AGHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYDL 117
Query: 585 PYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQT 644
+ E + + L E+V E+ + H F++ ++ ++ Q
Sbjct: 118 HRYFYTGAEIL-GLIDEKHREL-PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQD 175
Query: 645 LADQLIAADHYA---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 685
+A +L A YA A+ I +K ++V W+ L +A +R++L
Sbjct: 176 VATRLQTA--YAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 217
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAGLTAS 209
VIA+YDY + E+S K ++ ++N ++ DWW+ E+N G P+ YV KM S
Sbjct: 21 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV-KMTTDSDPS 79
Query: 210 QQNLADVKEVKILETANDIQERREQVLN 237
QQ AD ++ L+T I+ +R+ ++
Sbjct: 80 QQWCAD---LQTLDTMQPIERKRQGYIH 104
>pdb|3EDU|A Chain A, Crystal Structure Of The Ankyrin-Binding Domain Of Human
Erythroid Spectrin
Length = 218
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 92/215 (42%), Gaps = 3/215 (1%)
Query: 902 NTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELAS-HQPAIQN 960
+L Q R+ D E WI EK+L+ S + G+D V L+ K + E + Q + N
Sbjct: 1 GSLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDN 60
Query: 961 VQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEE 1020
V E+L+D + I + LN+ W++L +L R Q L S + E
Sbjct: 61 VNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEI 120
Query: 1021 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA-KN 1079
I EK + L ED G + + + H AFE + + + +L A
Sbjct: 121 LGLIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAG 179
Query: 1080 HHADSITQRCQQLQLKLDNLMALATKRKTKLMDNS 1114
A++I + Q++ L+ R+T+L+D +
Sbjct: 180 EKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTA 214
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 3/200 (1%)
Query: 807 DLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQA-HDDRIKDMNGQADSLIDS 865
DL+ W+ E E + +S + G+D V L K + + A +R+ ++N + LID+
Sbjct: 12 DLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDA 71
Query: 866 GQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLV 925
G +A++I E + +NE + + L R L + LH++F A+ I EK +
Sbjct: 72 GHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL 131
Query: 926 GSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDV-SNLGVPEIEQRLK 984
+D G D + ++ + H E EL +Q Q+ +L + I+ + +
Sbjct: 132 -PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQ 190
Query: 985 LLNQAWSELKQLAANRGQKL 1004
++ AW L A R +L
Sbjct: 191 EVSAAWQALLDACAGRRTQL 210
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 1/150 (0%)
Query: 589 KKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQTLAD 647
K++ + E W+S +E ++ E+ D+V L K DF + A +E++ + +
Sbjct: 7 KRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIE 66
Query: 648 QLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAE 707
+LI A H A I + + + + W L E + + L S L ++ E+ I E
Sbjct: 67 RLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDE 126
Query: 708 KLQLATEESYKDPANIQSKHQKHQAFEAEL 737
K + E+ D + +S H+ H AFE EL
Sbjct: 127 KHRELPEDVGLDASTAESFHRVHTAFEREL 156
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 1/149 (0%)
Query: 366 RDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINA-HEEKIGALQTLADQ 424
R+ + E W+S +E ++ E+ D+V L K DF + A +E++ + ++
Sbjct: 8 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 67
Query: 425 LIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEK 484
LI A H A I + + + + W L E + + L S L ++ E+ I EK
Sbjct: 68 LIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEK 127
Query: 485 LQLATEESYKDPANIQSKHQKHQAFEAEL 513
+ E+ D + +S H+ H AFE EL
Sbjct: 128 HRELPEDVGLDASTAESFHRVHTAFEREL 156
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 6/208 (2%)
Query: 1021 EAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAF--ETDFSVHRDRCADICSAGNKLIEAK 1078
E WISEK+ + S + G V L K F ET ++ ++R ++ + +LI+A
Sbjct: 14 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETG-AIGQERVDNVNAFIERLIDAG 72
Query: 1079 NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVK 1138
+ A +I + L +L+ L R L + ++ + + I +K +
Sbjct: 73 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL- 131
Query: 1139 SEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQL-VASNHDQTPAIVKRHG 1197
E+ G D ST ++ F+ LH + +Q + +L A ++ AI +
Sbjct: 132 PEDVGLDASTAESFHRVHTAFERELHLLGVQ-VQQFQDVATRLQTAYAGEKAEAIQNKEQ 190
Query: 1198 DVIARWQKLLGDSNARKQRLLRMQEQFR 1225
+V A WQ LL R+ +L+ ++FR
Sbjct: 191 EVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%)
Query: 1114 SAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQN 1173
+ Q + D +E WI++KE S E G+D V L K F A E + N
Sbjct: 1 GSLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDN 60
Query: 1174 ITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRL 1217
+ ++L+ + H + I + + W LL + R Q L
Sbjct: 61 VNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL 104
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 690 TLQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSV 747
+L Q R+ D++E WI+EK L ++ E +D ++ K + F E A +R+ +V
Sbjct: 2 SLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 61
Query: 748 LAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKD 807
A + LID G EA A+IA +W+ + L+L + Q +AA D
Sbjct: 62 NAFIERLID----AGHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYD 109
Query: 808 LD--FWLG-EVESLL------TSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 858
L F+ G E+ L+ ED G D ++ ++ + H E ++ +++
Sbjct: 110 LHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDV 169
Query: 859 ADSL--IDSGQFDASSIQEKRQSINERYERIKNLAAHRQARL 898
A L +G+ A +IQ K Q ++ ++ + + A R+ +L
Sbjct: 170 ATRLQTAYAGE-KAEAIQNKEQEVSAAWQALLDACAGRRTQL 210
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 21/225 (9%)
Query: 466 TLQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAELAA-NADRIQSV 523
+L Q R+ D++E WI+EK L ++ E +D ++ K + F E A +R+ +V
Sbjct: 2 SLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 61
Query: 524 LAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKD 583
A + LID G EA A+IA +W+ + L+L + Q +AA D
Sbjct: 62 NAFIERLID----AGHSEA-----ATIA-EWKDGLNEMWADLLELIDTRMQ--LLAASYD 109
Query: 584 LPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQ 643
L + E + + L E+V E+ + H F++ ++ ++ Q
Sbjct: 110 LHRYFYTGAEIL-GLIDEKHREL-PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQ 167
Query: 644 TLADQLIAADHYA---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 685
+A +L A YA A+ I +K ++V W+ L +A +R++L
Sbjct: 168 DVATRLQTA--YAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 210
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 114/273 (41%), Gaps = 51/273 (18%)
Query: 991 SELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKH 1050
+L ++ R Q+L T +L + E WI++KQ L D+GD++ +VQ + H
Sbjct: 749 GQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH 808
Query: 1051 ----------------------DAFETDFSVHRDRCADICSAG----------NKLIEAK 1078
++ +T + + R + AG + L +A+
Sbjct: 809 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIK-REPFVAPAGLTPNEIDSTWSALEKAE 867
Query: 1079 NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVK 1138
HA+++ +++LK +A+ ++ +++ +E+W K ++
Sbjct: 868 QEHAEAL-----RIELKRQKKIAVLLQKYNRILKK------------LENWATTKSVYLG 910
Query: 1139 SEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGD 1198
S E G ++ VQ L E FD + E + ++ ++ QL N++ P + +R
Sbjct: 911 SNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDT 970
Query: 1199 VIA-RWQKLLGDSNARKQRLLRMQEQFRQIEDL 1230
A +W + + K LL E+ ++IEDL
Sbjct: 971 FFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 1003
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 21/213 (9%)
Query: 894 RQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRL------ 947
R+ RL T + + + WI +K+ + S D+G + VQ+ HK
Sbjct: 758 REQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKP 817
Query: 948 -EAELASHQPAIQNVQETGEKLMDVSNLGVP------EIEQRLKLLNQA---WSELKQLA 997
+ + S AI N +T +L+ P EI+ L +A +E ++
Sbjct: 818 PKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIE 877
Query: 998 ANRGQKLDESL-TYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETD 1056
R +K+ L Y L K+E W + K L + GD++ AVQ LK +AF+ +
Sbjct: 878 LKRQKKIAVLLQKYNRILKKLEN---WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934
Query: 1057 F-SVHRDRCADICSAGNKLIEAKNHHADSITQR 1088
S+ +D+ S +L E + +T+R
Sbjct: 935 CQSLEGQSNSDLLSILAQLTELNYNGVPELTER 967
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 80/170 (47%), Gaps = 19/170 (11%)
Query: 360 TGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKA--------INAH 411
T +D+ + + W++ ++A L + + ++V++ + H+++ K ++
Sbjct: 767 TKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSEL 826
Query: 412 EEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLK-------EAL-IEKRSRLGE 463
E +LQT +LI + + A P ++ W L+ EAL IE + +
Sbjct: 827 EAIYNSLQTKL-RLIKREPFVA-PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 884
Query: 464 SQTLQQFSRDADEMENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAE 512
+ LQ+++R ++ENW K + L + E+ +Q+K + +AF+ E
Sbjct: 885 AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 460 RLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPA-NIQSKHQKHQAF-EAELAANA 517
RLG QT + + A+E+ WI +K + D ++QS H+ + + E
Sbjct: 761 RLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKG 820
Query: 518 DRIQSVLAMGQNLIDKRQCVGSEEAV-QARLAS--IADQWEFLTQKTTEKSLKLKEANKQ 574
+ + A+ +L K + + E V A L I W L + E + L+ K+
Sbjct: 821 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 880
Query: 575 RTYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFD 629
+ IA + L +++ ++ ENW + + +L + E V+A +K E FD
Sbjct: 881 QKKIAVL--LQKYNRI-LKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFD 932
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 123/292 (42%), Gaps = 42/292 (14%)
Query: 741 ADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASI---ADQWEFLTQKTTEKS---LKLKE 794
AD ++ + N+ R S++A A L + +Q+ F K ++ +++E
Sbjct: 699 ADFVKRYYLLAPNV--PRDAEDSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARIEE 756
Query: 795 ANKQRT--------YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKH-------- 838
A +QR Y+ +L W+ + ++ L S D G + SVQ+ + H
Sbjct: 757 AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 816
Query: 839 ----------QLVEADIQAHDDRIKDMNGQADSLIDSGQFDAS-SIQEKRQSINERYERI 887
+ + +Q IK A + + + D++ S EK + + RI
Sbjct: 817 PPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRI 876
Query: 888 KNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRL 947
+ RQ ++ A L ++ R + E+W K + +GS++ G +T VQ K +
Sbjct: 877 E---LKRQKKI--AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAF 931
Query: 948 EAELASHQP-AIQNVQETGEKLMDVSNLGVPEIEQRL-KLLNQAWSELKQLA 997
+ E S + + ++ +L +++ GVPE+ +R Q W+ +K A
Sbjct: 932 DGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSA 983
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 20/191 (10%)
Query: 684 RLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPA-NIQSKHQKHQAF-EAELAANA 741
RLG QT + + A+E+ WI +K + D ++QS H+ + + E
Sbjct: 761 RLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKG 820
Query: 742 DRIQSVLAMGQNLIDKRQCVGSEEAV-QARLAS--IADQWEFLTQKTTEKSLKLKEANKQ 798
+ + A+ +L K + + E V A L I W L + E + L+ K+
Sbjct: 821 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 880
Query: 799 RTYIAA--------VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDD 850
+ IA +K L+ W L S ++G + +VQ +K +++A D
Sbjct: 881 QKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLK-------NLEAFDG 933
Query: 851 RIKDMNGQADS 861
+ + GQ++S
Sbjct: 934 ECQSLEGQSNS 944
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAGLTAS 209
VI +YDYT ++ E++ K ++ +LN + DWWK EV+ + G P+ YV K+ + S
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV-KLTTDMDPS 63
Query: 210 QQNLADVKEVKILETANDIQERREQ 234
QQ +D+ + +L ER+ Q
Sbjct: 64 QQWCSDLHLLDMLTPT----ERKRQ 84
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
+ALY + + ++ M+ D++TLL +N+DWWK ++ DR GF PA +V+++
Sbjct: 11 VALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 54.3 bits (129), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
+G + ALYDYT ++P E+ + D+L ++ WW VE N ++GFVP +Y++K+
Sbjct: 6 SGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKL 63
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power
Stroke State
Length = 995
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 51/255 (20%)
Query: 1009 TYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKH------------------ 1050
T +L + E WI++KQ L D+GD++ +VQ + H
Sbjct: 759 TKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSEL 818
Query: 1051 ----DAFETDFSVHRDRCADICSAG----------NKLIEAKNHHADSITQRCQQLQLKL 1096
++ +T + + R + AG + L +A+ HA+++ +++LK
Sbjct: 819 EAIYNSLQTKLRLIK-REPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL-----RIELKR 872
Query: 1097 DNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQ 1156
+A+ ++ +++ +E+W K ++ S E G ++ VQ L
Sbjct: 873 QKKIAVLLQKYNRILKK------------LENWATTKSVYLGSNETGDSITAVQAKLKNL 920
Query: 1157 ETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIA-RWQKLLGDSNARKQ 1215
E FD + E + ++ ++ QL N++ P + +R A +W + + K
Sbjct: 921 EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKN 980
Query: 1216 RLLRMQEQFRQIEDL 1230
LL E+ ++IEDL
Sbjct: 981 TLLAELERLQKIEDL 995
Score = 37.7 bits (86), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 21/190 (11%)
Query: 917 WIKEKKLLVGSDDYGRDLTGVQNL-------KKKHKRLEAELASHQPAIQNVQETGEKLM 969
WI +K+ + S D+G + VQ+ KK K + + S AI N +T +L+
Sbjct: 773 WINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLI 832
Query: 970 DVSNLGVP------EIEQRLKLLNQA---WSELKQLAANRGQKLDESL-TYQHFLAKVEE 1019
P EI+ L +A +E ++ R +K+ L Y L K+E
Sbjct: 833 KREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLEN 892
Query: 1020 EEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDF-SVHRDRCADICSAGNKLIEAK 1078
W + K L + GD++ AVQ LK +AF+ + S+ +D+ S +L E
Sbjct: 893 ---WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN 949
Query: 1079 NHHADSITQR 1088
+ +T+R
Sbjct: 950 YNGVPELTER 959
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 19/198 (9%)
Query: 332 NLQAKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKT 391
NL Q F A V A + T +D+ + + W++ ++A L + +
Sbjct: 731 NLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSI 790
Query: 392 DNVEALIKKHEDFDKA--------INAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQV 443
++V++ + H+++ K ++ E +LQT +LI + + A P ++
Sbjct: 791 ESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQT-KLRLIKREPFVA-PAGLTPNEI 848
Query: 444 LDRWRLLK-------EAL-IEKRSRLGESQTLQQFSRDADEMENWIAEK-LQLATEESYK 494
W L+ EAL IE + + + LQ+++R ++ENW K + L + E+
Sbjct: 849 DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 908
Query: 495 DPANIQSKHQKHQAFEAE 512
+Q+K + +AF+ E
Sbjct: 909 SITAVQAKLKNLEAFDGE 926
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 801 YIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKH------------------QLVE 842
Y+ +L W+ + ++ L S D G + SVQ+ + H + +
Sbjct: 763 YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIY 822
Query: 843 ADIQAHDDRIKDMNGQADSLIDSGQFDAS-SIQEKRQSINERYERIKNLAAHRQARLNEA 901
+Q IK A + + + D++ S EK + + RI+ RQ ++ A
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIE---LKRQKKI--A 877
Query: 902 NTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQP-AIQN 960
L ++ R + E+W K + +GS++ G +T VQ K + + E S + + +
Sbjct: 878 VLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSD 937
Query: 961 VQETGEKLMDVSNLGVPEIEQRL-KLLNQAWSELKQLA 997
+ +L +++ GVPE+ +R Q W+ +K A
Sbjct: 938 LLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSA 975
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 598 WMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKA--------INAHEEKIGALQTLADQL 649
W++ ++A L + + ++V++ + H+++ K ++ E +LQT +L
Sbjct: 773 WINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQT-KLRL 831
Query: 650 IAADHYAAKPIDDKRKQVLDRWRLLK-------EAL-IEKRSRLGESQTLQQFSRDADEM 701
I + + A P ++ W L+ EAL IE + + + LQ+++R ++
Sbjct: 832 IKREPFVA-PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKL 890
Query: 702 ENWIAEK-LQLATEESYKDPANIQSKHQKHQAFEAE 736
ENW K + L + E+ +Q+K + +AF+ E
Sbjct: 891 ENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 926
>pdb|1WLX|A Chain A, Solution Structure Of The Third Spectrin Repeat Of Alpha-
Actinin-4
Length = 129
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 1274 ASSFNSWFENAEEDLTDPVRCNSIEEIRALREXXXXXXXXXXXXXXDFEALAALD---QQ 1330
A+ FN+W E+A EDL D ++IEEI L + EA+ A+ Q+
Sbjct: 21 AAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQR 80
Query: 1331 IKSFN----VGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQ 1374
I N G NPYT T + + W +Q+++ +RD L +E ++Q
Sbjct: 81 IAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHALLEEQSKQ 128
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
VIA+YDY + E+S K ++ ++N ++ DWW+ E+N G P+ YVK
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 37/49 (75%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
A++D+ + RE++ K DV+ +L+++NKDWW +++D +G+ PA++V+
Sbjct: 15 AVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVR 63
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V AL+D+ + E++ K+ DV+TL+N ++ +WW+ ++N+R+G P+ YV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 52.0 bits (123), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V AL+D+ + E++ K+ DV+TL+N ++ +WW+ ++N+R+G P+ YV
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V AL+D+ + E++ K+ DV+TL+N ++ +WW+ ++N+R+G P+ YV
Sbjct: 7 VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56
>pdb|2IAK|A Chain A, Crystal Structure Of A Protease Resistant Fragment Of The
Plakin Domain Of Bullous Pemphigoid Antigen1 (Bpag1)
Length = 224
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 12/205 (5%)
Query: 805 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLID 864
V+DL W+ E++ L + G DL SV++ ++ H+ V I+ + +K+ I
Sbjct: 29 VQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAK------IS 82
Query: 865 SGQFDAS---SIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEK 921
Q A S +K + +Y ++ N + +++ L +TLH F +E W+ EK
Sbjct: 83 EIQMTAPLKLSYTDKLHRLESQYAKLLNTSRNQERHL---DTLHNFVTRATNELIWLNEK 139
Query: 922 KLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQ 981
+ + D+ + V K H L EL + +I+ VQE E+L+ ++ IE
Sbjct: 140 EESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEA 199
Query: 982 RLKLLNQAWSELKQLAANRGQKLDE 1006
+ WS + QL Q + E
Sbjct: 200 YRAAMQTQWSWILQLCQCVEQHIQE 224
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 50.4 bits (119), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 143 DVTGKECVIALYDYTEKSPREVSMKKSDVLTLLN----SNNKDWWKVEVNDRQGFVPAAY 198
+ G + A+Y + ++P E+S+ + L +L + N +WW EVN ++G+VP+ Y
Sbjct: 9 EAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNY 68
Query: 199 VKKMEAG 205
++K E+G
Sbjct: 69 IRKTESG 75
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYV 199
VIALYDY P+E+++++++ LL+S+ WW+V+ N +G+VP++Y+
Sbjct: 11 VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 61
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
C AL+D+ +E+ K DV+ ++++ N++WW V D +G+ PA++V+
Sbjct: 32 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVR 83
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNN--KDWWKVEVNDRQGFVPAAYVK 200
+ALY++ + P +++ KK DV+T+L ++ DWW N ++G PA YV+
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYVR 58
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 115 SDLEAFGNTILGLREQAQSCRQ-----QETPVIDVTGKECVIALYDYTEKSPREVSMKKS 169
SD++ + + E C Q QE + + K + AL+DY ++ E+ MK+
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEK--MGIMNKGVIYALWDYEPQNDDELPMKEG 192
Query: 170 DVLTLLNSNNKD---WWKVEVNDRQGFVP 195
D +T+++ ++D WW +ND++G+VP
Sbjct: 193 DCMTIIHREDEDEIEWWWARLNDKEGYVP 221
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
C AL+D+ +E+ K DV+ + ++ N++WW V D +G+ PA++V+
Sbjct: 69 CAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVR 120
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYV 199
VIALYDY P+E+++++++ LL+S+ WW+V+ N +G+VP++Y+
Sbjct: 22 VIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYL 72
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 1 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 60
Query: 203 EA 204
++
Sbjct: 61 DS 62
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 2 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
Query: 203 EA 204
++
Sbjct: 62 DS 63
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYVK 200
IA YD+ + E+S K+ D+L +LN +++W+K E+N + GF+P Y++
Sbjct: 4 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V AL+D+ + E+ ++ D + ++++++ +WWK + + G P YV
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210
>pdb|2LV7|A Chain A, Solution Structure Of Ca2+-Bound Cabp7 N-Terminal Doman
Length = 100
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 7/76 (9%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+ ED L+E FK FD+D +G +++ E + +R+LGY +P + E E I+ +D
Sbjct: 30 IPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGY-MP------NEVELEVIIQRLD 82
Query: 1548 PNRDGHVSLQEYMAFM 1563
+ DG V +E++ +
Sbjct: 83 MDGDGQVDFEEFVTLL 98
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
E IA +DY +S RE+S KK L L + ++DWW+ N G VP Y+
Sbjct: 7 EFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
V ALYDY ++ E++ K+ D + + + WW+ E+N ++G+VPA YV+ +
Sbjct: 6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 58
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
V ALYDY ++ E++ K+ D + + + WW+ E+N ++G+VPA YV+ +
Sbjct: 7 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI 59
>pdb|3SG5|A Chain A, Crystal Structure Of Dimeric Gcamp3-D380y, Qp(Linker 1),
Lp(Linker 2)
Length = 448
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++NL Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 292 LGHKLEYNLPDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 340
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + DG + E++ M K +S
Sbjct: 341 ----QNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYTDS 381
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKD---WWKVEVNDRQGFVP 195
+ + K + AL+DY ++ E+ MK+ D +T+++ ++D WW +ND++G+VP
Sbjct: 165 MGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVP 221
>pdb|4TNC|A Chain A, Refined Structure Of Chicken Skeletal Muscle Troponin C In
The Two-Calcium State At 2-Angstroms Resolution
Length = 162
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 1476 LEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQP 1535
++QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 4 MDQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE---- 56
Query: 1536 DPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564
E +AI++ VD + G + +E++ M+
Sbjct: 57 --ELDAIIEEVDEDGSGTIDFEEFLVMMV 83
>pdb|3SG4|A Chain A, Crystal Structure Of Gcamp3-D380y, Lp(Linker 2)
Length = 448
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++NL Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 292 LGHKLEYNLPDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 340
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + DG + E++ M K +S
Sbjct: 341 ----QNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYTDS 381
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
C AL+D+ +E+ K DV+ ++++ N++WW V D +G+ PA++V+
Sbjct: 38 CAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVR 89
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
+A + YT ++ +E+S ++ DVL L + DWW+ E N +G +P Y+
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized Average
Structure
Length = 77
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYV 199
VIALYDY P+E++++ + LL+S+ WW+V+ N +G+ P++Y+
Sbjct: 23 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 73
>pdb|1TCF|A Chain A, Crystal Structure Of Calcium-Saturated Rabbit Skeletal
Troponin C
pdb|1TN4|A Chain A, Four Calcium Tnc
pdb|2TN4|A Chain A, Four Calcium Tnc
Length = 159
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1481 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540
QA +S +SE+ + EF F FD D G ++ E + +R LG P E E +
Sbjct: 4 QAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQ-TPTKE------ELD 56
Query: 1541 AILDLVDPNRDGHVSLQEYMAFMI 1564
AI++ VD + G + +E++ M+
Sbjct: 57 AIIEEVDEDGSGTIDFEEFLVMMV 80
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1546
G SE+ L E +F+ FD++ G ++ E RA G E D E E+++
Sbjct: 89 GKSEEELAE---LFRIFDRNADGYIDAEELAEIFRASG-------EHVTDEEIESLMKDG 138
Query: 1547 DPNRDGHVSLQEYMAFM 1563
D N DG + E++ M
Sbjct: 139 DKNNDGRIDFDEFLKMM 155
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
V+ALYDY SP ++S +K D + +L + +WWK ++G++P+ YV ++++
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDS 61
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNK---DWWKVEVNDRQGFVPAAYVK 200
ALYD +SP E+S +K D++T+L + + WW ++ RQG VP +K
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLK 59
>pdb|1AVS|A Chain A, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1AVS|B Chain B, X-Ray Crystallographic Study Of Calcium-Saturated N-
Terminal Domain Of Troponin C
pdb|1BLQ|A Chain A, Structure And Interaction Site Of The Regulatory Domain Of
Troponin-C When Complexed With The 96-148 Region Of
Troponin-I, Nmr, 29 Structures
pdb|1SKT|A Chain A, Solution Structure Of Apo N-Domain Of Troponin C, Nmr, 40
Structures
pdb|1TNP|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1TNQ|A Chain A, Structures Of The Apo And Calcium Troponin-C Regulatory
Domains: The Muscle Contraction Switch
pdb|1ZAC|A Chain A, N-Domain Of Troponin C From Chicken Skeletal Muscle, Nmr,
Minimized Average Structure
Length = 90
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 1481 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540
QA ++ +SE+ + EF F FD D G ++ E + +R LG + P E E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE------ELD 59
Query: 1541 AILDLVDPNRDGHVSLQEYMAFMI 1564
AI++ VD + G + +E++ M+
Sbjct: 60 AIIEEVDEDGSGTIDFEEFLVMMV 83
>pdb|1A2X|A Chain A, Complex Of Troponin C With A 47 Residue (1-47) Fragment Of
Troponin I
Length = 159
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1481 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540
QA +S +SE+ + EF F FD D G ++ E + +R LG P E E +
Sbjct: 4 QAEARSYLSEEMIAEFKAAFDMFDADGGGDISVKELGTVMRMLGQ-TPTKE------ELD 56
Query: 1541 AILDLVDPNRDGHVSLQEYMAFMI 1564
AI++ VD + G + +E++ M+
Sbjct: 57 AIIEEVDEDGSGTIDFEEFLVMMV 80
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1546
G SE+ L E F+ FD++ G ++ E RA G E D E E+++
Sbjct: 89 GKSEEELAE---CFRIFDRNADGYIDAEELAEIFRASG-------EHVTDEEIESLMKDG 138
Query: 1547 DPNRDGHVSLQEYMAFM 1563
D N DG + E++ M
Sbjct: 139 DKNNDGRIDFDEFLKMM 155
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNN--KDWWKVEVNDRQGFVPAAYVK 200
+ALY + + ++ +K DV+T+L ++ DWW VN R+G PA YV+
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 44.7 bits (104), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYVK 200
IA YD+ + E+S K+ D+L +LN +++W+K E+N + GF+P Y++
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63
>pdb|1YTZ|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
pdb|1YV0|C Chain C, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
pdb|1NCX|A Chain A, Troponin C
pdb|1NCY|A Chain A, Troponin-C, Complex With Manganese
pdb|1NCZ|A Chain A, Troponin C
pdb|1TOP|A Chain A, Structure Of Chicken Skeletal Muscle Troponin-C At 1.78
Angstroms Resolution
Length = 162
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 1477 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1536
+QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 5 DQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE----- 56
Query: 1537 PEFEAILDLVDPNRDGHVSLQEYMAFMI 1564
E +AI++ VD + G + +E++ M+
Sbjct: 57 -ELDAIIEEVDEDGSGTIDFEEFLVMMV 83
>pdb|2W49|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W49|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight Muscle
pdb|2W4U|0 Chain 0, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|3 Chain 3, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|6 Chain 6, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
pdb|2W4U|9 Chain 9, Isometrically Contracting Insect Asynchronous Flight Muscle
Quick Frozen After A Length Step
Length = 159
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 1477 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1536
+QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 2 DQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE----- 53
Query: 1537 PEFEAILDLVDPNRDGHVSLQEYMAFMI 1564
E +AI++ VD + G + +E++ M+
Sbjct: 54 -ELDAIIEEVDEDGSGTIDFEEFLVMMV 80
>pdb|1TNW|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal Muscle
Troponin C
pdb|1TNX|A Chain A, Nmr Solution Structure Of Calcium Saturated Skeletal Muscle
Troponin C
Length = 162
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 1477 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1536
+QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 5 DQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE----- 56
Query: 1537 PEFEAILDLVDPNRDGHVSLQEYMAFMI 1564
E +AI++ VD + G + +E++ M+
Sbjct: 57 -ELDAIIEEVDEDGSGTIDFEEFLVMMV 83
>pdb|5TNC|A Chain A, Refined Crystal Structure Of Troponin C From Turkey Skeletal
Muscle At 2.0 Angstroms Resolution
Length = 162
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 1477 EQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPD 1536
+QQ +AR + +SE+ + EF F FD D G ++ E + +R LG + P E
Sbjct: 5 DQQAEAR--AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE----- 56
Query: 1537 PEFEAILDLVDPNRDGHVSLQEYMAFMI 1564
E +AI++ VD + G + +E++ M+
Sbjct: 57 -ELDAIIEEVDEDGSGTIDFEEFLVMMV 83
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 3 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62
Query: 203 EA 204
++
Sbjct: 63 DS 64
>pdb|3QRX|A Chain A, Chlamydomonas Reinhardtii Centrin Bound To Melittin
Length = 169
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 1481 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540
Q + + G++E+ +E F FD D SG ++ E K +RALG++ P E E +
Sbjct: 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE-PKKE------EIK 67
Query: 1541 AILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
++ +D + G + +E++ M +K ++S
Sbjct: 68 KMISEIDKDGSGTIDFEEFLTMMTAKMGERDS 99
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
+ALYDY ++ ++S KK + L ++N+ DWW R G++P+ YV
Sbjct: 4 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYV 54
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1544
S+D KE + +F DK+ G+L++ E +K +R G D M++ + E + +LD
Sbjct: 353 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLD 412
Query: 1545 LVDPNRDGHVSLQEYMAFMISKET 1568
VD +++G++ E++ + ++T
Sbjct: 413 AVDFDKNGYIEYSEFVTVAMDRKT 436
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F+ FD D SGK++ TE + D ++++L VD N DG V E+
Sbjct: 447 FRMFDSDNSGKISSTELATIFGVSDVD---------SETWKSVLSEVDKNNDGEVDFDEF 497
Query: 1560 MAFMI 1564
++
Sbjct: 498 QQMLL 502
>pdb|3PDY|A Chain A, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
pdb|3PDY|B Chain B, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
Length = 210
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 78/194 (40%), Gaps = 6/194 (3%)
Query: 805 VKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLID 864
++DL W+ E + + + G DL SV+ + H+ + I+ +I+ D
Sbjct: 14 LQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARS------D 67
Query: 865 SGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLL 924
GQ ++ R + + L +ARL +LH F E W+ EK+
Sbjct: 68 EGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELMWLNEKEEE 127
Query: 925 VGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLK 984
D+ T + K+ + L EL + I+ +Q G++L+ + P +E
Sbjct: 128 EVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQA 187
Query: 985 LLNQAWSELKQLAA 998
L WS + QL
Sbjct: 188 ALQTQWSWMLQLCC 201
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 90/212 (42%), Gaps = 18/212 (8%)
Query: 908 FRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEK 967
R + D +W++E + V ++G DL V+ H+ L + + I+ + +
Sbjct: 11 LRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQ 70
Query: 968 LMDVSNLGVPEIEQRL-----KLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 1022
L + + RL KLLN + + L+ L ESL F+A +E
Sbjct: 71 LSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSL---------ESL--HSFVAAATKELM 119
Query: 1023 WISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHA 1082
W++EK++ D+ D + + + A + + + ++ +AG++L+ ++H A
Sbjct: 120 WLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLR-EDHPA 178
Query: 1083 DSITQRCQ-QLQLKLDNLMALATKRKTKLMDN 1113
+ Q LQ + ++ L + L +N
Sbjct: 179 RPTVESFQAALQTQWSWMLQLCCCIEAHLKEN 210
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1544
S+D KE + +F DK+ G+L++ E +K +R G D M++ + E + +LD
Sbjct: 354 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLD 413
Query: 1545 LVDPNRDGHVSLQEYMAFMISKET 1568
VD +++G++ E++ + ++T
Sbjct: 414 AVDFDKNGYIEYSEFVTVAMDRKT 437
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F+ FD D SGK++ TE + D ++++L VD N DG V E+
Sbjct: 448 FRMFDSDNSGKISSTELATIFGVSDVD---------SETWKSVLSEVDKNNDGEVDFDEF 498
Query: 1560 MAFMI 1564
++
Sbjct: 499 QQMLL 503
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
G +ALYDY ++ ++S KK + ++N+ DWW+ + G++P+ YV
Sbjct: 4 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYV 59
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 43.9 bits (102), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 2 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
Query: 203 E 203
+
Sbjct: 62 D 62
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1544
S+D KE + +F DK+ G+L++ E +K +R G D M++ + E + +LD
Sbjct: 330 SQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLD 389
Query: 1545 LVDPNRDGHVSLQEYMAFMISKET 1568
VD +++G++ E++ + ++T
Sbjct: 390 AVDFDKNGYIEYSEFVTVAMDRKT 413
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F+ FD D SGK++ TE + D ++++L VD N DG V E+
Sbjct: 424 FRMFDSDNSGKISSTELATIFGVSDVD---------SETWKSVLSEVDKNNDGEVDFDEF 474
Query: 1560 MAFMI 1564
++
Sbjct: 475 QQMLL 479
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
G +ALYDY ++ ++S KK + ++N+ DWW+ + G++P+ YV
Sbjct: 26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYV 81
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 37/60 (61%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
+ + C ALYD+ ++ E+ K+ D++TL N +++W++ ++ + GF P YV+ + A
Sbjct: 9 SDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVA 68
>pdb|3SG7|A Chain A, Crystal Structure Of Gcamp3-Kf(Linker 1)
Length = 448
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 292 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 340
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + DG + E++ M K +S
Sbjct: 341 ----QNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDS 381
>pdb|3SG3|A Chain A, Crystal Structure Of Gcamp3-D380y
Length = 449
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + DG + E++ M K +S
Sbjct: 342 ----QNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKYTDS 382
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
G +ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 6 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The Src
Sh3 Domain
Length = 64
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
G +ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 6 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 61
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNS-NNKDWWKVEVNDRQGFVPAAYV 199
IA D+ + E+S K+ D+L +LN ++++W+K E+N + GF+P Y+
Sbjct: 4 IAKVDFKATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYI 53
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
ALY + ++P E+ +++ D++ + + ++ +WWK R G +P+ YV
Sbjct: 19 ALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
AL+D+T S E++ K DV+ LL+ NKDW + V G P ++VK ++
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 230
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
C ALYD+ ++ E+ K+ D++TL N +++W++ ++ GF P YV+ + A
Sbjct: 9 CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA 64
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKV-EVNDRQGFVPAAYVKKME 203
V+ALYDY + ++ ++K D +L +N WW+ + N ++G++P+ YV + E
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY + ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 13 TGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Query: 203 E 203
+
Sbjct: 73 D 73
>pdb|2AMI|A Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor
Domain Of Centrin
Length = 96
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 1481 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540
Q + + G++E+ +E F FD D SG ++ E K +RALG++ P E E +
Sbjct: 17 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE-PKKE------EIK 69
Query: 1541 AILDLVDPNRDGHVSLQEYMAFMISK 1566
++ +D + G + +E++ M +K
Sbjct: 70 KMISEIDKDGSGTIDFEEFLTMMTAK 95
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 144 VTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYVKK 201
+T + VIA +DYT + +E+ +KK++ L LL+ ++K WW+V +R G+VP+ YV++
Sbjct: 1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVER 58
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY + ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 13 TGVTLFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
Query: 203 E 203
+
Sbjct: 73 D 73
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine Kinase,
20 Structures
Length = 58
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKV-EVNDRQGFVPAAYVKKME 203
V+ALYDY + ++ ++K D +L +N WW+ + N ++G++P+ YV + E
Sbjct: 4 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 58
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYV 199
VIALYDY P+E++++ + LL+S+ WW+V+ N +G+ P++Y+
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 3 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 62
Query: 203 EA 204
++
Sbjct: 63 DS 64
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQ-GFVPAAYV 199
V+ALYDYT E+++ + D++ + +N+DWW + Q G+ PA +V
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYV 199
VIALYDY P+E++++ + LL+S+ WW+V+ N +G+ P++Y+
Sbjct: 8 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYL 58
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
V+ALYDY SP ++S +K D + +L + +WWK ++G++P+ YV ++++
Sbjct: 6 VVALYDYVSWSPDDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDS 61
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKD--WWKVEVNDRQGFVPAAYVK 200
+G C + ++ Y ++ E+++K+ D++TL+N + D WW+ E+N R+G P +VK
Sbjct: 6 SGDYCKV-IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
G +ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 84 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 139
>pdb|1SMG|A Chain A, Calcium-Bound E41a Mutant Of The N-Domain Of Chicken
Troponin C, Nmr, 40 Structures
Length = 90
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 1481 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540
QA ++ +SE+ + EF F FD D G ++ + +R LG + P E E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKALGTVMRMLGQN-PTKE------ELD 59
Query: 1541 AILDLVDPNRDGHVSLQEYMAFMI 1564
AI++ VD + G + +E++ M+
Sbjct: 60 AIIEEVDEDGSGTIDFEEFLVMMV 83
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
ALYD+ E+ + +V+ +L+S+N WW ++++ G PA YV M
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 60
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
G +ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 2 GVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYV 57
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
AL+D+T S E++ K DV+ LL+ NKDW + V G P ++VK ++
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 60
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
TG +ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV +
Sbjct: 1 TGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 60
Query: 203 EA 204
++
Sbjct: 61 DS 62
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
ALYD+ E+ + +V+ +L+S+N WW ++++ G PA YV M
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 57
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLN--SNNKDWWKVEVNDRQGFVPAAYVKK 201
+A Y++ + RE+S+++ DV+ + + ++ WWK E N R G+ P+ YV++
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEE 63
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM-- 202
+G+ C ALY + + E++++K D++ + + WW +N ++G PAAYV+++
Sbjct: 6 SGRLCK-ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPS 64
Query: 203 EAGLTASQ 210
AG TA++
Sbjct: 65 NAGNTATK 72
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 147 KECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
+ C LYD+ ++ E+ K+ D++TL N +++W++ ++ GF P YV+
Sbjct: 3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVE 56
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAG 205
+ALYDY E+S D++T + + WW+ R G PA YV+ ++G
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG 75
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 36/61 (59%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
+G E + + +Y ++ E+S++ +V+ ++ N WW V ++ QG+VPA Y++ +
Sbjct: 6 SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNS 65
Query: 205 G 205
G
Sbjct: 66 G 66
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
G +ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 1 GSTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|3SG6|A Chain A, Crystal Structure Of Dimeric Gcamp2-Lia(Linker 1)
Length = 450
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 294 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 342
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + +G + E++ M K +S
Sbjct: 343 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS 383
>pdb|3SG2|A Chain A, Crystal Structure Of Gcamp2-T116v,D381y
Length = 449
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + +G + E++ M K +S
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKYTDS 382
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKD---WWKVEVNDRQGFVPAAYVKKMEAG 205
V ALYDY ++ E+S + ++ +LN N+D +W+ E N R G P+ V+++ +G
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG 69
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 1469 GMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1528
G MQ + R+Q ++E+ + EF F FDKD G + E + +R+LG
Sbjct: 279 GAVMQKKTKGWEPTRDQ--LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG---- 332
Query: 1529 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + DG + E++ M K +S
Sbjct: 333 ---QNPTEAELQDMINEVDADGDGTIDFPEFLIMMARKMKDTDS 373
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 142 IDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYVK 200
+ +T + VIA +DYT + +E+ +KK++ L LL+ ++K WW+V +R G+VP+ YV+
Sbjct: 26 LHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLD-DSKTWWRVRNAANRTGYVPSNYVE 84
Query: 201 K 201
+
Sbjct: 85 R 85
>pdb|3EVU|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2, (#1)
pdb|3EVV|A Chain A, Crystal Structure Of Calcium Bound Dimeric Gcamp2 (#2)
pdb|3EK4|A Chain A, Calcium-Saturated Gcamp2 Monomer
pdb|3EK7|A Chain A, Calcium-Saturated Gcamp2 Dimer
Length = 449
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + +G + E++ M K +S
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS 382
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
ALYD+ E+ + +V+ +L+S+N WW ++++ G PA YV M
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 58
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
ALY + ++P E+ ++ D++ + + ++ +WWK R G +P+ YV +
Sbjct: 12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 61
>pdb|1NPQ|A Chain A, Structure Of A Rhodamine-Labeled N-Domain Troponin C Mutant
(Ca2+ Saturated) In Complex With Skeletal Troponin I 115-
131
Length = 90
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 1481 QARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540
QA ++ +SE+ + EF F FD D G ++ E + +R LG + E +
Sbjct: 7 QAEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLG-------QNPTKCELD 59
Query: 1541 AILDLVDPNRDGHVSLQEYMAFMI 1564
AI+ VD + G + +E++ M+
Sbjct: 60 AIICEVDEDGSGTIDFEEFLVMMV 83
>pdb|3EK8|A Chain A, Calcium-Saturated Gcamp2 T116vG87R MUTANT MONOMER
Length = 449
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + +G + E++ M K +S
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS 382
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
ALYD+ E+ + +V+ +L+S+N WW ++++ G PA YV M
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM 56
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
+ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV +++
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDS 60
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAG 205
E IALY Y+ P +++ + + + L+ + +WW + DR G P+ YVK ++G
Sbjct: 9 EEYIALYPYSSVEPGDLTFTEGEEI-LVTQKDGEWWTGSIGDRSGIFPSNYVKPKDSG 65
>pdb|3EVR|A Chain A, Crystal Structure Of Calcium Bound Monomeric Gcamp2
Length = 411
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 256 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 304
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ VD + +G + E++ M K +S
Sbjct: 305 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDS 345
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
AL+D+T S E++ K DV+ LL+ NKDW + V G P ++VK ++
Sbjct: 23 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 74
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 41.6 bits (96), Expect = 0.004, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 33/49 (67%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
ALYD+ ++ E+ ++ D++TL N +++W++ ++ + GF P +YV+
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQ 66
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN-DRQGFVPAAYVKKMEAGLT 207
V+A +DY + +E+ +KK++ L LL+ ++K WW+V + ++ GFVP+ YV++ +
Sbjct: 9 VVVAKFDYVAQQEQELDIKKNERLWLLD-DSKSWWRVRNSMNKTGFVPSNYVERKNSARA 67
Query: 208 AS 209
A+
Sbjct: 68 AA 69
>pdb|1CLM|A Chain A, Structure Of Paramecium Tetraurelia Calmodulin At 1.8
Angstroms Resolution
Length = 148
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISKETRQNS 1572
+ +G + E+++ M K Q+S
Sbjct: 57 ADGNGTIDFPEFLSLMARKMKEQDS 81
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
FK FD+D +G ++ E + + LG L D E + ++ D + DGH++ +E+
Sbjct: 89 FKVFDRDGNGLISAAELRHVMTNLGEKLT-------DDEVDEMIREADIDGDGHINYEEF 141
Query: 1560 MAFMISK 1566
+ M+SK
Sbjct: 142 VRMMVSK 148
>pdb|1EXR|A Chain A, The 1.0 Angstrom Crystal Structure Of Ca+2 Bound Calmodulin
pdb|1N0Y|A Chain A, Crystal Structure Of Pb-Bound Calmodulin
pdb|1N0Y|B Chain B, Crystal Structure Of Pb-Bound Calmodulin
pdb|1OSA|A Chain A, Crystal Structure Of Recombinant Paramecium Tetraurelia
Calmodulin At 1.68 Angstroms Resolution
Length = 148
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISKETRQNS 1572
+ +G + E+++ M K Q+S
Sbjct: 57 ADGNGTIDFPEFLSLMARKMKEQDS 81
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
FK FD+D +G ++ E + + LG L D E + ++ D + DGH++ +E+
Sbjct: 89 FKVFDRDGNGLISAAELRHVMTNLGEKLT-------DDEVDEMIREADIDGDGHINYEEF 141
Query: 1560 MAFMISK 1566
+ M+SK
Sbjct: 142 VRMMVSK 148
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
+ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
+ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 153 LYDYTEKSPREVSMKKSDVLTLLNSNNKD--WWKVEVNDRQGFVPAAYVK 200
++ Y ++ E+++K+ D++TL+N + D WW+ E+N R+G P +VK
Sbjct: 8 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
IA +DY ++ RE+S KK L L + DWW+ N G +P Y+
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI 61
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
+ALYDY ++ ++S KK + L ++N+ DWW + G++P+ YV
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYV 56
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 153 LYDYTEKSPREVSMKKSDVLTLLNSNNKD--WWKVEVNDRQGFVPAAYVK 200
++ Y ++ E+++K+ D++TL+N + D WW+ E+N R+G P +VK
Sbjct: 9 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKME 203
+ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV ++
Sbjct: 5 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 59
>pdb|2K0J|A Chain A, Solution Structure Of Cam Complexed To Drp1p
pdb|2K61|A Chain A, Solution Structure Of Cam Complexed To Dapk Peptide
Length = 148
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ DG + E++ M K
Sbjct: 57 ADGDGTIDFPEFLTMMARK 75
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
IALYDY E+S D++T + + WW+ R G PA YV+
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
+ALYDY ++ ++S K + +LNS+ DWW+ G++P+ YV
Sbjct: 4 VALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 54
>pdb|3EKH|A Chain A, Calcium-Saturated Gcamp2 T116vK378W MUTANT MONOMER
Length = 449
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 341
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1563
+ + E + +++ VD + +G + E++ M
Sbjct: 342 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMM 373
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
ALY + ++P E+ ++ D++ + + ++ +WWK R G +P+ YV +
Sbjct: 8 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 57
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
G E V ALY + + ++ +K D + LL + +W+K N R G PA YVK
Sbjct: 1 GMEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
E V+A+YDYT+ E+S ++ ++ ++ N+ W++ +N G P YV+ +
Sbjct: 18 EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISG 74
>pdb|2LHI|A Chain A, Solution Structure Of Ca2+CNA1 PEPTIDE-Bound Ycam
Length = 176
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1545
S ++E+ + EF F FDKD +G ++ +E + +R+LG P + E +++
Sbjct: 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLS-P------SEAEVNDLMNE 55
Query: 1546 VDPNRDGHVSLQEYMAFMISKETRQNSS 1573
+D + + + E++A M S++ + N S
Sbjct: 56 IDVDGNHQIEFSEFLALM-SRQLKSNDS 82
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKD-WWKVEVNDRQGFVPAAYVKK 201
A YD+ + E+S+K+ D++ +LN + WW+ E+ R G+ P+ YV++
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 40.8 bits (94), Expect = 0.006, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
G++C + L+DY+ ++ E+ + DV+ ++ + WW +N++ G P+ +VK++E
Sbjct: 4 GRQCKV-LFDYSPQNEDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVKELE 60
>pdb|3O78|A Chain A, The Structure Of Ca2+ Sensor (Case-12)
pdb|3O78|B Chain B, The Structure Of Ca2+ Sensor (Case-12)
Length = 415
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + E + +R+LG
Sbjct: 259 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 307
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566
+ + E + +++ VD + +G + E++ M K
Sbjct: 308 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 342
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKME 203
ALYDY ++ ++S K + +LNS+ DWW+V G++P+ Y+ ++
Sbjct: 12 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAPVD 65
>pdb|1LKJ|A Chain A, Nmr Structure Of Apo Calmodulin From Yeast Saccharomyces
Cerevisiae
Length = 146
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1545
S ++E+ + EF F FDKD +G ++ +E + +R+LG + E +++
Sbjct: 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGL-------SPSEAEVNDLMNE 54
Query: 1546 VDPNRDGHVSLQEYMAFMISKETRQNSS 1573
+D + + + E++A M S++ + N S
Sbjct: 55 IDVDGNHQIEFSEFLALM-SRQLKSNDS 81
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 142 IDVTGK---ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAY 198
+D+TG + A+ DY + S E+++ DV+ ++ + WW ++ ++G++PA++
Sbjct: 3 MDITGPIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASF 62
Query: 199 VKKMEA 204
++ +++
Sbjct: 63 LEPLDS 68
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 129 EQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN 188
E S + E P + G E +A+ YT EVS+ + + + +++ WW + +
Sbjct: 64 EPLDSPDETEDPEPNYAG-EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 122
Query: 189 DRQGFVPAAYVKKMEAGLTASQQNL 213
D G+ P+ Y++K ++ +Q+ +
Sbjct: 123 DVTGYFPSMYLQKSGQDVSQAQRQI 147
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYVKK 201
E V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 2 EYVRALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEK 56
>pdb|2LHH|A Chain A, Solution Structure Of Ca2+-Bound Ycam
Length = 128
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1545
S ++E+ + EF F FDKD +G ++ +E + +R+LG + E +++
Sbjct: 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGL-------SPSEAEVNDLMNE 54
Query: 1546 VDPNRDGHVSLQEYMAFMISKETRQNSS 1573
+D + + + E++A M S++ + N S
Sbjct: 55 IDVDGNHQIEFSEFLALM-SRQLKSNDS 81
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN-DRQGFVPAAYVKK 201
V+A +DY + +E+ +KK++ L LL+ ++K WW+V + ++ GFVP+ YV++
Sbjct: 8 VVVAKFDYVAQQEQELDIKKNERLWLLD-DSKSWWRVRNSMNKTGFVPSNYVER 60
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3
Domain Complexed With An Artificial High Affinity Ligand
(Pd1)
Length = 86
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 139 TPVIDVTGKE--CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFV 194
TP I G E V+ALYDY ++S +K D + +L + +WWK ++G++
Sbjct: 15 TPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYI 73
Query: 195 PAAYVKKMEA 204
P+ YV ++++
Sbjct: 74 PSNYVARVDS 83
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+G+E + + YT +S E+ +K + ++ N + WW + ++G+ PA+Y+KK
Sbjct: 6 SGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKK 62
>pdb|3O77|A Chain A, The Structure Of Ca2+ Sensor (Case-16)
Length = 415
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 15/99 (15%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N +R+Q ++E+ + EF F FDKD G + E + +R+LG
Sbjct: 259 LGHKLEYN------SRDQ--LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--- 307
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566
+ + E + +++ VD + +G + E++ M K
Sbjct: 308 ----QNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 342
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
+ALYDY E+S D++T + + WW+ R G PA YV+
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 63
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 40.4 bits (93), Expect = 0.009, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 127 LREQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE 186
L E RQ ++ E V AL+D+ ++ KK D+L + + + WW E
Sbjct: 114 LIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE 173
Query: 187 VND-RQGFVPAAYVKK 201
++ ++G +P YV+K
Sbjct: 174 DSEGKRGMIPVPYVEK 189
>pdb|1SW8|A Chain A, Solution Structure Of The N-Terminal Domain Of Human N60d
Calmodulin Refined With Paramagnetism Based Strategy
Length = 79
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ DG + E++ M K
Sbjct: 57 ADGDGTIDFPEFLTMMARK 75
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG------YDLPMVEEGQPDPEFEA 1541
S++ KE + +F+H DK+ G+L++ E L +DLP +E E +A
Sbjct: 57 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIE-----SEVDA 111
Query: 1542 ILDLVDPNRDGHVSLQEYMAFMISKET 1568
IL D +R+G++ E++ + +++
Sbjct: 112 ILGAADFDRNGYIDYSEFVTVAMDRKS 138
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLN-SNNKDWWKVEVNDRQGFVPAAYV 199
IA +D++ + E+S +K+ +L +LN ++ +W++ E++ ++G +P+ Y+
Sbjct: 4 IAKHDFSATADDELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 154 YDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
+D+ +SP+E++++K D++ + +K+W + E + R G PA YV+ +
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVL 56
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLN-SNNKDWWKVEVNDRQGFVPAAYV 199
IA +D++ + E+S +K +L +LN ++ +W++ E++ ++G +P+ Y+
Sbjct: 4 IAKHDFSATADDELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYI 53
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKME 203
ALYDY ++ ++S K + +LNS+ DWW+ G++P+ Y+ ++
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
+ V+ALY Y P ++S KK + + +L + +WWK + + ++GF+P+ YV K+
Sbjct: 8 DIVVALYPYDGIHPDDLSFKKGEKMKVLEEHG-EWWKAKSLLTKKEGFIPSNYVAKL 63
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 39.7 bits (91), Expect = 0.013, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKKM 202
E V LYD+ ++ KK ++L ++ + WW D R G +P YV+K+
Sbjct: 126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 39.7 bits (91), Expect = 0.014, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKKM 202
E V LYD+ ++ KK ++L ++ + WW D R G +P YV+K+
Sbjct: 126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 39.7 bits (91), Expect = 0.014, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
+ALYDY + ++S K + +LNS+ DWW+ G++P+ YV +++
Sbjct: 4 VALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDS 59
>pdb|2LAN|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 N-Domain With Rdc
pdb|2LAP|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain With Rdc
Length = 167
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 1482 ARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPE 1538
+R + + ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q
Sbjct: 13 SRKDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ--- 69
Query: 1539 FEAILDLVDPNRDGHVSLQEYMAFMISKETRQNSSLV 1575
++ N GHV +++ M K + + ++
Sbjct: 70 -------INMNLGGHVDFDDFVELMGPKLLAETADMI 99
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNR 1550
+KE F+ FD + G+++ +E + +R LG+ + G D E I+ VD N
Sbjct: 100 GVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQV-----GHRD--IEEIIRDVDLNG 152
Query: 1551 DGHVSLQEYMAFM 1563
DG V +E++ M
Sbjct: 153 DGRVDFEEFVRMM 165
>pdb|2F2O|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2O|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|A Chain A, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
pdb|2F2P|B Chain B, Structure Of Calmodulin Bound To A Calcineurin Peptide: A
New Way Of Making An Old Binding Mode
Length = 179
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|1TRF|A Chain A, Solution Structure Of The Tr1c Fragment Of Skeletal Muscle
Troponin-C
Length = 76
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+SE+ + EF F FD D G ++ E + +R LG + P E E +AI++ VD
Sbjct: 3 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN-PTKE------ELDAIIEEVD 55
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ G + +E++ M+ +
Sbjct: 56 EDGSGTIDFEEFLVMMVRQ 74
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 39.7 bits (91), Expect = 0.015, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 153 LYDYTEKSPREVSMKKSDVLTLLNSNNKD--WWKVEVNDRQGFVPAAYVK 200
++ Y ++ E+++K+ D++TL+N + D WW+ E+N R+G P +VK
Sbjct: 15 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 127 LREQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE 186
L E RQ ++ E V AL+D+ ++ KK D+L + + + WW E
Sbjct: 114 LIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE 173
Query: 187 VND-RQGFVPAAYVKK 201
++ ++G +P YV+K
Sbjct: 174 DSEGKRGMIPVPYVEK 189
>pdb|1RFJ|A Chain A, Crystal Structure Of Potato Calmodulin Pcm6
Length = 149
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++ED + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLNLMARK 76
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 127 LREQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE 186
L E RQ ++ E V AL+D+ ++ KK D+L + + + WW E
Sbjct: 116 LIEPVSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAE 175
Query: 187 VND-RQGFVPAAYVKK 201
++ ++G +P YV+K
Sbjct: 176 DSEGKRGMIPVPYVEK 191
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 39.3 bits (90), Expect = 0.017, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYV 199
+ALYDY + ++S K + +LNS+ DWW+ G++P+ YV
Sbjct: 5 VALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYV 55
>pdb|3PE0|A Chain A, Structure Of The Central Region Of The Plakin Domain Of
Plectin
pdb|3PE0|B Chain B, Structure Of The Central Region Of The Plakin Domain Of
Plectin
Length = 283
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%)
Query: 903 TLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQ 962
+LH F E W+ EK+ D+ T + K+ + L EL + I+ +Q
Sbjct: 9 SLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQ 68
Query: 963 ETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEA 1022
G++L+ + P +E L WS + QL L E+ Y F + V E E
Sbjct: 69 NAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEG 128
Query: 1023 WISEKQQLLSVEDYGDTMAAVQGL 1046
+ + Q+ L + D A V L
Sbjct: 129 QLQKLQEALRRKYSCDRSATVTRL 152
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 1013 FLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGN 1072
F+A +E W++EK++ D+ D + + + A + + + ++ +AG+
Sbjct: 13 FVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGD 72
Query: 1073 KLIEAKNHHADSITQRCQQ-LQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVES 1128
+L+ ++H A + Q LQ + ++ L + L +N+AY QF +DV E+
Sbjct: 73 RLLR-EDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFF--SDVREA 126
>pdb|3KF9|A Chain A, Crystal Structure Of The SdcenSKMLCK COMPLEX
pdb|3KF9|C Chain C, Crystal Structure Of The SdcenSKMLCK COMPLEX
Length = 149
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV 1546
G++E+ +E F FD D SG ++ E K +RALG++ P E E + ++ +
Sbjct: 1 GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE-PKKE------EIKKMIADI 53
Query: 1547 DPNRDGHVSLQEYMAFMISKETRQNS 1572
D + G + +E++ M +K ++S
Sbjct: 54 DKDGSGTIDFEEFLQMMTAKMGERDS 79
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 1475 NLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQ 1534
+ E+ +Q D+ +E F+ FD D++GK++ K + LG E
Sbjct: 62 DFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELG-------ENM 114
Query: 1535 PDPEFEAILDLVDPNRDGHVSLQEYMAFMISKET 1568
D E + ++D D + DG V+ +E+ F I K+T
Sbjct: 115 TDEELQEMIDEADRDGDGEVNEEEF--FRIMKKT 146
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG------YDLPMVEEGQPDPEFEAI 1542
S++ KE + +F+H DK+ G+L++ E L +DLP +E E +AI
Sbjct: 341 SQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIES-----EVDAI 395
Query: 1543 LDLVDPNRDGHVSLQEYMAFMISKET 1568
L D +R+G++ E++ + +++
Sbjct: 396 LGAADFDRNGYIDYSEFVTVAMDRKS 421
>pdb|2A4J|A Chain A, Solution Structure Of The C-Terminal Domain (T94-Y172) Of
The Human Centrin 2 In Complex With A 17 Residues Peptide
(P1-Xpc) From Xeroderma Pigmentosum Group C Protein
pdb|2K2I|A Chain A, Nmr Solution Structure Of The C-Terminal Domain (T94-Y172)
Of The Human Centrin 2 In Complex With A Repeat Sequence
Of Human Sfi1 (R641-T660)
Length = 79
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
FK FD D++GK++ K + LG +L D E + ++D D + DG VS QE+
Sbjct: 17 FKLFDDDETGKISFKNLKRVAKELGENL-------TDEELQEMIDEADRDGDGEVSEQEF 69
Query: 1560 MAFM 1563
+ M
Sbjct: 70 LRIM 73
>pdb|2KXW|A Chain A, Structure Of The C-Domain Fragment Of Apo Calmodulin Bound
To The Iq Motif Of Nav1.2
Length = 73
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
FK FD+D +G ++ E + + LG L D E + ++ D + DGH++ +E+
Sbjct: 14 FKVFDRDGNGLISAAELRHVMTNLGEKLT-------DDEVDEMIREADIDGDGHINYEEF 66
Query: 1560 MAFMISK 1566
+ M+SK
Sbjct: 67 VRMMVSK 73
>pdb|4DJC|A Chain A, 1.35 A Crystal Structure Of The Nav1.5 Diii-Iv-CaCAM COMPLEX
Length = 152
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 8 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 60
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 61 ADGNGTIDFPEFLTMMARK 79
>pdb|1DMO|A Chain A, Calmodulin, Nmr, 30 Structures
pdb|3CLN|A Chain A, Structure Of Calmodulin Refined At 2.2 Angstroms Resolution
Length = 148
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|2YGG|B Chain B, Complex Of Cambr And Cam
Length = 150
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|1PRW|A Chain A, Crystal Structure Of Bovine Brain Ca++ Calmodulin In A
Compact Form
Length = 149
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|1UP5|A Chain A, Chicken Calmodulin
pdb|1UP5|B Chain B, Chicken Calmodulin
Length = 148
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1CDL|A Chain A, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|B Chain B, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|C Chain C, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1CDL|D Chain D, Target Enzyme Recognition By Calmodulin: 2.4 Angstroms
Structure Of A Calmodulin-Peptide Complex
pdb|1PK0|D Chain D, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|E Chain E, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|F Chain F, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|3GP2|A Chain A, Calmodulin Bound To Peptide From Calmodulin Kinase Ii
(Camkii)
Length = 147
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1IQ5|A Chain A, CalmodulinNEMATODE CA2+CALMODULIN DEPENDENT KINASE KINASE
Fragment
pdb|1LVC|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 2'
Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 2'
Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 2'
Deoxy, 3' Anthraniloyl Atp
pdb|2BKI|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|2BKI|D Chain D, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
pdb|1WRZ|A Chain A, Calmodulin Complexed With A Peptide From A Human
Death-Associated Protein Kinase
pdb|2V01|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Pb
pdb|2V02|A Chain A, Recombinant Vertebrate Calmodulin Complexed With Ba
pdb|2R28|A Chain A, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2R28|B Chain B, The Complex Structure Of Calmodulin Bound To A Calcineurin
Peptide
pdb|2W73|A Chain A, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|2W73|B Chain B, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|2W73|E Chain E, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|2W73|F Chain F, High-Resolution Structure Of The Complex Between Calmodulin
And A Peptide From Calcineurin A
pdb|3HR4|B Chain B, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|D Chain D, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|F Chain F, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|H Chain H, Human Inos Reductase And Calmodulin Complex
pdb|3OXQ|A Chain A, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|3OXQ|B Chain B, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|3OXQ|C Chain C, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|3OXQ|D Chain D, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN COMPLEX
pdb|2Y4V|A Chain A, Crystal Structure Of Human Calmodulin In Complex With A Dap
Kinase-1 Mutant (W305y) Peptide
pdb|3SJQ|A Chain A, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|3SJQ|B Chain B, Crystal Structure Of A Small Conductance Potassium Channel
Splice Variant Complexed With Calcium-Calmodulin
pdb|4DCK|B Chain B, Crystal Structure Of The C-Terminus Of Voltage-Gated Sodium
Channel In Complex With Fgf13 And Cam
pdb|3SUI|A Chain A, Crystal Structure Of Ca2+-Calmodulin In Complex With A Trpv1
C- Terminal Peptide
pdb|4G27|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Phenylurea
pdb|4G28|R Chain R, Calcium-Calmodulin Complexed With The Calmodulin Binding
Domain From A Small Conductance Potassium Channel Splice
Variant And Ebio-1
Length = 149
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|1XFU|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFV|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFY|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|O Chain O, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|P Chain P, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|R Chain R, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|S Chain S, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|T Chain T, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 39.3 bits (90), Expect = 0.019, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 154 YDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
+D+ +SP+E++++K D++ + +K+W + E + R G PA YV+
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
>pdb|3EWT|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
pdb|3EWV|A Chain A, Crystal Structure Of Calmodulin Complexed With A Peptide
Length = 154
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 10 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 62
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 63 ADGNGTIDFPEFLTMMARK 81
>pdb|2WEL|D Chain D, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 150
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 6 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 58
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 59 ADGNGTIDFPEFLTMMARK 77
>pdb|2VAY|A Chain A, Calmodulin Complexed With Cav1.1 Iq Peptide
pdb|2LGF|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
L-Selectin
Length = 146
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 54
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 55 ADGNGTIDFPEFLTMMARK 73
>pdb|1CM1|A Chain A, Motions Of Calmodulin-Single-Conformer Refinement
pdb|1CM4|A Chain A, Motions Of Calmodulin-four-conformer Refinement
pdb|1CKK|A Chain A, CalmodulinRAT CA2+CALMODULIN DEPENDENT PROTEIN KINASE
Fragment
pdb|1CFF|A Chain A, Nmr Solution Structure Of A Complex Of Calmodulin With A
Binding Peptide Of The Ca2+-Pump
pdb|1QIV|A Chain A, Calmodulin Complexed With N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd), 1:2
Complex
pdb|1QIW|A Chain A, Calmodulin Complexed With N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1QIW|B Chain B, Calmodulin Complexed With N-(3,3,-Diphenylpropyl)-N'-[1-R-(
3,4-Bis-Butoxyphenyl)-Ethyl]-Propylenediamine (Dpd)
pdb|1G4Y|R Chain R, 1.60 A Crystal Structure Of The Gating Domain From Small
Conductance Potassium Channel Complexed With
Calcium-Calmodulin
pdb|1K90|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 3'
Deoxy-Atp
pdb|1K90|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 3'
Deoxy-Atp
pdb|1K90|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin And 3'
Deoxy-Atp
pdb|1IWQ|A Chain A, Crystal Structure Of Marcks Calmodulin Binding Domain
Peptide Complexed With Ca2+CALMODULIN
pdb|1NWD|A Chain A, Solution Structure Of Ca2+CALMODULIN BOUND TO THE C-
Terminal Domain Of Petunia Glutamate Decarboxylase
pdb|1L7Z|A Chain A, Crystal Structure Of Ca2+/calmodulin Complexed With
Myristoylated Cap-23/nap-22 Peptide
pdb|1S26|D Chain D, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|E Chain E, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|F Chain F, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin, 3',5'
Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin, 3',5'
Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin, 3',5'
Cyclic Amp (Camp), And Pyrophosphate
pdb|1QX5|D Chain D, Crystal Structure Of Apocalmodulin
pdb|1QX5|I Chain I, Crystal Structure Of Apocalmodulin
pdb|1QX5|B Chain B, Crystal Structure Of Apocalmodulin
pdb|1QX5|J Chain J, Crystal Structure Of Apocalmodulin
pdb|1QX5|K Chain K, Crystal Structure Of Apocalmodulin
pdb|1QX5|T Chain T, Crystal Structure Of Apocalmodulin
pdb|1QX5|R Chain R, Crystal Structure Of Apocalmodulin
pdb|1QX5|Y Chain Y, Crystal Structure Of Apocalmodulin
pdb|1XA5|A Chain A, Structure Of Calmodulin In Complex With Kar-2, A Bis-Indol
Alkaloid
pdb|1SY9|A Chain A, Structure Of Calmodulin Complexed With A Fragment Of The
Olfactory Cng Channel
pdb|2F3Y|A Chain A, CalmodulinIQ DOMAIN COMPLEX
pdb|2F3Z|A Chain A, CalmodulinIQ-Aa Domain Complex
pdb|1X02|A Chain A, Solution Structure Of Stereo Array Isotope Labeled (Sail)
Calmodulin
pdb|2DFS|B Chain B, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|C Chain C, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|D Chain D, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|E Chain E, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|F Chain F, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|G Chain G, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|N Chain N, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|O Chain O, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|P Chain P, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|Q Chain Q, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|R Chain R, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|S Chain S, 3-D Structure Of Myosin-V Inhibited State
pdb|1YR5|A Chain A, 1.7-A Structure Of Calmodulin Bound To A Peptide From Dap
Kinase
pdb|2FOT|A Chain A, Crystal Structure Of The Complex Between Calmodulin And
Alphaii-Spectrin
pdb|2BCX|A Chain A, Crystal Structure Of Calmodulin In Complex With A Ryanodine
Receptor Peptide
pdb|1A29|A Chain A, Calmodulin Complexed With Trifluoperazine (1:2 Complex)
pdb|1CFC|A Chain A, Calcium-Free Calmodulin
pdb|1CFD|A Chain A, Calcium-Free Calmodulin
pdb|1CLL|A Chain A, Calmodulin Structure Refined At 1.7 Angstroms Resolution
pdb|1CTR|A Chain A, Drug Binding By Calmodulin: Crystal Structure Of A
Calmodulin-Trifluoperazine Complex
pdb|1LIN|A Chain A, Calmodulin Complexed With Trifluoperazine (1:4 Complex)
pdb|1MUX|A Chain A, Solution Nmr Structure Of CalmodulinW-7 Complex: The Basis
Of Diversity In Molecular Recognition, 30 Structures
pdb|2HQW|A Chain A, Crystal Structure Of Ca2+CALMODULIN BOUND TO NMDA RECEPTOR
NR1C1 Peptide
pdb|2O5G|A Chain A, Calmodulin-Smooth Muscle Light Chain Kinase Peptide Complex
pdb|2O60|A Chain A, Calmodulin Bound To Peptide From Neuronal Nitric Oxide
Synthase
pdb|3BXK|A Chain A, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1) Iq
Domain And Ca2+calmodulin Complex
pdb|3BXK|C Chain C, Crystal Structure Of The PQ-Type Calcium Channel (Cav2.1) Iq
Domain And Ca2+calmodulin Complex
pdb|3BXL|A Chain A, Crystal Structure Of The R-Type Calcium Channel (Cav2.3) Iq
Domain And Ca2+calmodulin Complex
pdb|2K0E|A Chain A, A Coupled Equilibrium Shift Mechanism In Calmodulin-
Mediated Signal Transduction
pdb|2K0F|A Chain A, Calmodulin Complexed With Calmodulin-Binding Peptide From
Smooth Muscle Myosin Light Chain Kinase
pdb|3DVE|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain Complex
pdb|3DVJ|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.2 Iq Domain (Without
Cloning Artifact, Hm To Tv) Complex
pdb|3DVK|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.3 Iq Domain Complex
pdb|3DVM|A Chain A, Crystal Structure Of Ca2+CAM-Cav2.1 Iq Domain Complex
pdb|2JZI|A Chain A, Structure Of Calmodulin Complexed With The Calmodulin
Binding Domain Of Calcineurin
pdb|3BYA|A Chain A, Structure Of A Calmodulin Complex
pdb|3G43|A Chain A, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|3G43|B Chain B, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|3G43|C Chain C, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|3G43|D Chain D, Crystal Structure Of The Calmodulin-Bound Cav1.2 C-Terminal
Regulatory Domain Dimer
pdb|2KNE|A Chain A, Calmodulin Wraps Around Its Binding Domain In The Plasma
Membrane Ca2+ Pump Anchored By A Novel 18-1 Motif
pdb|2KDU|A Chain A, Structural Basis Of The Munc13-1CA2+-Calmodulin Interaction:
A Novel 1-26 Calmodulin Binding Motif With A Bipartite
Binding Mode
pdb|2X0G|B Chain B, X-ray Structure Of A Dap-kinase Calmodulin Complex
pdb|3GOF|A Chain A, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3GOF|B Chain B, Calmodulin Bound To Peptide From Macrophage Nitric Oxide
Synthase
pdb|3IF7|A Chain A, Structure Of Calmodulin Complexed With Its First Endogenous
Inhibitor, Sphingosylphosphorylcholine
pdb|2L53|A Chain A, Solution Nmr Structure Of Apo-Calmodulin In Complex With The
Iq Motif Of Human Cardiac Sodium Channel Nav1.5
pdb|2L7L|A Chain A, Solution Structure Of Ca2+CALMODULIN COMPLEXED WITH A
PEPTIDE Representing The Calmodulin-Binding Domain Of
Calmodulin Kinase I
pdb|2LL6|A Chain A, Solution Nmr Structure Of Cam Bound To Inos Cam Binding
Domain Peptide
pdb|2LL7|A Chain A, Solution Nmr Structure Of Cam Bound To The Enos Cam Binding
Domain Peptide
pdb|4EHQ|A Chain A, Crystal Structure Of Calmodulin Binding Domain Of Orai1 In
Complex With Ca2+CALMODULIN DISPLAYS A UNIQUE BINDING
MODE
Length = 148
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 39.3 bits (90), Expect = 0.020, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+AY+
Sbjct: 4 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 53
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
V+ALYDY ++S +K D + +L + +WWK ++G++P+ YV ++++
Sbjct: 11 IVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDS 67
>pdb|2BE6|A Chain A, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|B Chain B, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|2BE6|C Chain C, 2.0 A Crystal Structure Of The Cav1.2 Iq Domain-CaCAM
COMPLEX
pdb|1ZUZ|A Chain A, Calmodulin In Complex With A Mutant Peptide From Human Drp-1
Kinase
Length = 150
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|4GOW|D Chain D, Crystal Structure Of Ca2+CAM:KV7.4 (KCNQ4) B HELIX COMPLEX
Length = 144
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 2 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 54
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 55 ADGNGTIDFPEFLTMMARK 73
>pdb|4DS7|A Chain A, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|B Chain B, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|C Chain C, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
pdb|4DS7|D Chain D, Crystal Structure Of Yeast Calmodulin Bound To The
C-Terminal Fragment Of Spindle Pole Body Protein Spc110
Length = 147
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD SG ++ +E + +R+LG + E +++ +D
Sbjct: 5 LTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGL-------SPSEAEVADLMNEID 57
Query: 1548 PNRDGHVSLQEYMAFMISKETRQNSS 1573
+ + + E++A M S++ + N S
Sbjct: 58 VDGNHAIEFSEFLALM-SRQLKCNDS 82
>pdb|1CDM|A Chain A, Modulation Of Calmodulin Plasticity In Molecular Recognition
On The Basis Of X-Ray Structures
Length = 144
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 53
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 54 ADGNGTIDFPEFLTMMARK 72
>pdb|2LV6|A Chain A, The Complex Between Ca-calmodulin And Skeletal Muscle Myosin
Light Chain Kinase From Combination Of Nmr And Aqueous
And Contrast-matched Saxs Data
Length = 148
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 38.9 bits (89), Expect = 0.021, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKK 201
G E V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 2 GAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|2IX7|A Chain A, Structure Of Apo-Calmodulin Bound To Unconventional Myosin V
pdb|2IX7|B Chain B, Structure Of Apo-Calmodulin Bound To Unconventional Myosin V
Length = 145
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 3 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 55
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 56 ADGNGTIDFPEFLTMMARK 74
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLN-SNNKDWWKVEVN-DRQGFVPAAYVKKM 202
+G EC IA Y++ + +++ K DVLT++ + + +W+K + R+G +PA YV+K
Sbjct: 10 SGTEC-IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
Query: 203 EA 204
E
Sbjct: 69 EG 70
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 38.9 bits (89), Expect = 0.023, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+AY+
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58
>pdb|2BBM|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex By
Multidimensional Nmr
pdb|2BBN|A Chain A, Solution Structure Of A Calmodulin-Target Peptide Complex By
Multidimensional Nmr
pdb|1MXE|A Chain A, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|1MXE|B Chain B, Structure Of The Complex Of Calmodulin With The Target
Sequence Of Camki
pdb|4CLN|A Chain A, Structure Of A Recombinant Calmodulin From Drosophila
Melanogaster Refined At 2.2-Angstroms Resolution
Length = 148
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
ALY + K ++ K+DV+T+L + WW EV ++G+ P +YVK + A
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVKLISA 68
>pdb|3IFK|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal
Domain Fragment, Residues 1-90
pdb|3IFK|B Chain B, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal
Domain Fragment, Residues 1-90
Length = 90
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1OOJ|A Chain A, Structural Genomics Of Caenorhabditis Elegans : Calmodulin
Length = 149
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|1AHR|A Chain A, Calmodulin Mutant With A Two Residue Deletion In The Central
Helix
Length = 146
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 38.9 bits (89), Expect = 0.025, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
ALY Y + E+S +D++ ++ + WW + +QG P YV K+
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI 60
>pdb|2BKH|B Chain B, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
pdb|2VAS|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|3GN4|B Chain B, Myosin Lever Arm
pdb|3GN4|D Chain D, Myosin Lever Arm
pdb|3GN4|F Chain F, Myosin Lever Arm
pdb|3GN4|H Chain H, Myosin Lever Arm
pdb|3L9I|C Chain C, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
pdb|2X51|B Chain B, M6 Delta Insert1
pdb|4ANJ|B Chain B, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
pdb|4DBP|C Chain C, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
pdb|4DBQ|B Chain B, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 149
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|2OBH|A Chain A, Centrin-Xpc Peptide
pdb|2OBH|B Chain B, Centrin-Xpc Peptide
Length = 143
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
FK FD D++GK++ K + LG +L D E + ++D D + DG VS QE+
Sbjct: 85 FKLFDDDETGKISFKNLKRVAKELGENL-------TDEELQEMIDEADRDGDGEVSEQEF 137
Query: 1560 MAFM 1563
+ M
Sbjct: 138 LRIM 141
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F FD D +G ++ E K +RALG++ P E E + ++ +D G ++ ++
Sbjct: 12 FDLFDADGTGTIDVKELKVAMRALGFE-PKKE------EIKKMISEIDKEGTGKMNFGDF 64
Query: 1560 MAFMISKETRQNS 1572
+ M K + +++
Sbjct: 65 LTVMTQKMSEKDT 77
>pdb|3UUL|A Chain A, Crystal Structure Of First N-Terminal Utrophin Spectrin
Repeat
pdb|3UUL|B Chain B, Crystal Structure Of First N-Terminal Utrophin Spectrin
Repeat
Length = 118
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 928 DDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVP---EIEQRLK 984
DD D+ V+ H+ EL++HQ ++ +V + G +LM L EI++++
Sbjct: 29 DDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMT 88
Query: 985 LLNQAWSELKQLAANRGQKLDESL 1008
LLN W L+ + R +L ++L
Sbjct: 89 LLNARWEALRVESMERQSRLHDAL 112
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 368 CEQAENWM-SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 426
E+ W+ SA + F +++ ++V+ HE F ++AH+ +G++ +QL+
Sbjct: 11 LEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70
Query: 427 AADHYAAK---PIDDKRKQVLDRWRLLKEALIEKRSRL 461
+ + I ++ + RW L+ +E++SRL
Sbjct: 71 TQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 592 CEQAENWM-SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 650
E+ W+ SA + F +++ ++V+ HE F ++AH+ +G++ +QL+
Sbjct: 11 LEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70
Query: 651 AADHYAAK---PIDDKRKQVLDRWRLLKEALIEKRSRL 685
+ + I ++ + RW L+ +E++SRL
Sbjct: 71 TQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 800 TYIAAVKDLDFWLGEVESLLTSEDS-GKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 858
+Y A++++ WL E +D D+ V+ H+ ++ AH + +
Sbjct: 6 SYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65
Query: 859 ADSLIDSGQF---DASSIQEKRQSINERYERIKNLAAHRQARLNEA 901
+ L+ G + IQE+ +N R+E ++ + RQ+RL++A
Sbjct: 66 GNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDA 111
>pdb|1Y0V|H Chain H, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|I Chain I, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|J Chain J, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|K Chain K, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|L Chain L, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|M Chain M, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 146
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1548
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 3 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVDA 55
Query: 1549 NRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 56 DGNGTIDFPEFLTMMARK 73
>pdb|2VB6|B Chain B, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State (
Crystal Form 2)
Length = 149
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|1DEG|A Chain A, The Linker Of Des-Glu84 Calmodulin Is Bent As Seen In The
Crystal Structure
Length = 142
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1548
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVDA 53
Query: 1549 NRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 54 DGNGTIDFPEFLTMMARK 71
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor Whi-P180
Length = 484
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTE----FKSCLRALGYDLPMVEEGQPDPEFEAILD 1544
S+D KE + +F DK+ G+L++ E +K R G D ++ + E + +LD
Sbjct: 330 SQDETKELTAIFHKXDKNGDGQLDRAELIEGYKELXRXKGQDASXLDASAVEHEVDQVLD 389
Query: 1545 LVDPNRDGHVSLQEYMAFMISKET 1568
VD +++G++ E++ ++T
Sbjct: 390 AVDFDKNGYIEYSEFVTVAXDRKT 413
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F+ FD D SGK++ TE + D ++++L VD N DG V E+
Sbjct: 424 FRXFDSDNSGKISSTELATIFGVSDVD---------SETWKSVLSEVDKNNDGEVDFDEF 474
>pdb|1K93|D Chain D, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|E Chain E, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|F Chain F, Crystal Structure Of The Adenylyl Cyclase Domain Of Anthrax
Edema Factor (Ef) In Complex With Calmodulin
Length = 144
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 1489 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP 1548
+E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVDA 53
Query: 1549 NRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 54 DGNGTIDFPEFLTMMARK 71
>pdb|1F54|A Chain A, Solution Structure Of The Apo N-Terminal Domain Of Yeast
Calmodulin
pdb|1F55|A Chain A, Solution Structure Of The Calcium Bound N-Terminal Domain Of
Yeast Calmodulin
Length = 77
Score = 38.5 bits (88), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1545
S ++E+ + EF F FDKD +G ++ +E + +R+LG + E +++
Sbjct: 2 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGL-------SPSEAEVNDLMNE 54
Query: 1546 VDPNRDGHVSLQEYMAFM 1563
+D + + + E++A M
Sbjct: 55 IDVDGNHQIEFSEFLALM 72
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 38.5 bits (88), Expect = 0.030, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLN-SNNKDWWKVEVN-DRQGFVPAAYVKKM 202
+G EC IA Y++ + +++ K DVLT++ + + +W+K + R+G +PA YV+K
Sbjct: 10 SGTEC-IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
Query: 203 EA 204
E
Sbjct: 69 EG 70
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 38.5 bits (88), Expect = 0.032, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V A+YD+ E++ K +++T+L+ ++ +WWK E + G P+ +V
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|3UCT|A Chain A, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCT|B Chain B, Structure Of Mn2+-Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
pdb|3UCW|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|B Chain B, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|C Chain C, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCW|D Chain D, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin
pdb|3UCY|A Chain A, Structure Of Mg2+ Bound N-Terminal Domain Of Calmodulin In
The Presence Of Zn2+
Length = 79
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|3B32|A Chain A, Crystal Structure Of Calcium-Saturated Calmodulin N-Terminal
Domain Fragment, Residues 1-75
Length = 75
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|1AK8|A Chain A, Nmr Solution Structure Of Cerium-Loaded Calmodulin Amino-
Terminal Domain (Ce2-Tr1c), 23 Structures
Length = 76
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLTMMARK 76
>pdb|2LQC|A Chain A, Nmr Solution Structure Of A Ca2+-Calmodulin With A Binding
Motif (Nscate) Peptide From The N-Terminal Cytoplasmic
Domain Of The L-Type Voltage-Cated Calcium Channel
Alpha1c Subunit
Length = 77
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|2LLO|A Chain A, Solution Nmr-Derived Structure Of Calmodulin N-Lobe Bound
With Er Alpha Peptide
Length = 80
Score = 38.1 bits (87), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
V+ALYDY ++S +K D + +L + +WWK ++G++P+ YV ++++
Sbjct: 12 VVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDS 67
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.1 bits (87), Expect = 0.036, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 143 DVTGK---ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
D+TG + A+ DY + S E+++ DV+ ++ + WW ++ ++G++PA+++
Sbjct: 3 DITGPIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFL 62
Query: 200 KKMEA 204
+ +++
Sbjct: 63 EPLDS 67
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 129 EQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN 188
E S + E P + G E +A+ YT EVS+ + + + +++ WW + +
Sbjct: 63 EPLDSPDETEDPEPNYAG-EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 121
Query: 189 DRQGFVPAAYVKK 201
D G+ P+ Y++K
Sbjct: 122 DVTGYFPSMYLQK 134
>pdb|1F70|A Chain A, Refined Solution Structure Of Calmodulin N-Terminal Domain
pdb|2PQ3|A Chain A, N-Terminal Calmodulin Zn-Trapped Intermediate
pdb|2KUG|A Chain A, Halothane Binds To Druggable Sites In Calcium-Calmodulin:
Solution Structure Of Halothane-Cam N-Terminal Domain
Length = 76
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|3UUM|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
pdb|3UUM|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Utrophin
Length = 123
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 928 DDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVP---EIEQRLK 984
DD D+ V+ H+ EL++HQ ++ +V + G +LM L EI++++
Sbjct: 29 DDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMT 88
Query: 985 LLNQAWSELKQLAANRGQKLDESL 1008
LLN W L+ + R +L ++L
Sbjct: 89 LLNARWEALRVESMERQSRLHDAL 112
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 368 CEQAENWM-SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 426
E+ W+ SA + F +++ ++V+ HE F ++AH+ +G++ +QL+
Sbjct: 11 LEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70
Query: 427 AADHYAAK---PIDDKRKQVLDRWRLLKEALIEKRSRL 461
+ + I ++ + RW L+ +E++SRL
Sbjct: 71 TQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 592 CEQAENWM-SAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLI 650
E+ W+ SA + F +++ ++V+ HE F ++AH+ +G++ +QL+
Sbjct: 11 LEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70
Query: 651 AADHYAAK---PIDDKRKQVLDRWRLLKEALIEKRSRL 685
+ + I ++ + RW L+ +E++SRL
Sbjct: 71 TQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 800 TYIAAVKDLDFWLGEVESLLTSEDS-GKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQ 858
+Y A++++ WL E +D D+ V+ H+ ++ AH + +
Sbjct: 6 SYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA 65
Query: 859 ADSLIDSGQF---DASSIQEKRQSINERYERIKNLAAHRQARLNEA 901
+ L+ G + IQE+ +N R+E ++ + RQ+RL++A
Sbjct: 66 GNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDA 111
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 34/53 (64%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
A+ DY + S E+++ DV+ ++ + WW ++ ++G++PA++++ +++
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS 68
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 129 EQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN 188
E S + E P + G E +A+ YT EVS+ + + + +++ WW + +
Sbjct: 64 EPLDSPDETEDPEPNYAG-EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 122
Query: 189 DRQGFVPAAYVKKMEAGLTASQQNL 213
D G+ P+ Y++K ++ +Q+ +
Sbjct: 123 DVTGYFPSMYLQKSGQDVSQAQRQI 147
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.1 bits (87), Expect = 0.037, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 34/53 (64%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
A+ DY + S E+++ DV+ ++ + WW ++ ++G++PA++++ +++
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS 68
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 129 EQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN 188
E S + E P + G E +A+ YT EVS+ + + + +++ WW + +
Sbjct: 64 EPLDSPDETEDPEPNYAG-EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 122
Query: 189 DRQGFVPAAYVKK 201
D G+ P+ Y++K
Sbjct: 123 DVTGYFPSMYLQK 135
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 38.1 bits (87), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+SE+ +E F FD +K+G ++ E K +RALG+D+ PE +++ D
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDV-------KKPEILELMNEYD 53
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+G++ +++ M K
Sbjct: 54 REGNGYIGFDDFLDIMTEK 72
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 38.1 bits (87), Expect = 0.039, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSN---NKDWWKVEVNDRQGFVPA 196
ALYD E++ + D+LT+L + ++ WWK ++ RQG PA
Sbjct: 12 ALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPA 59
>pdb|4AQR|A Chain A, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
pdb|4AQR|B Chain B, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 149
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+++D + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 5 LTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-------QNPTEAELQDMINEVD 57
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 58 ADGNGTIDFPEFLNLMARK 76
>pdb|1J7O|A Chain A, Solution Structure Of Calcium-calmodulin N-terminal Domain
Length = 76
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLTMMARK 75
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 64
Score = 38.1 bits (87), Expect = 0.041, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKV-EVNDRQGFVP 195
T + V+ YD+ ++ E+S+K+ DVL +L+ + K WWKV + ++G+VP
Sbjct: 5 TAGKWVLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQEGYVP 55
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165) Of
The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
FK FD D++GK++ K + LG +L D E + ++D D + DG VS QE+
Sbjct: 27 FKLFDDDETGKISFKNLKRVAKELGENL-------TDEELQEMIDEADRDGDGEVSEQEF 79
Query: 1560 MAFM 1563
+ M
Sbjct: 80 LRIM 83
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 37.7 bits (86), Expect = 0.050, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLN-SNNKDWWKVEVN-DRQGFVPAAYVKKM 202
+G EC IA Y++ + +++ K DVLT++ + + +W+K + R+G +PA YV+K
Sbjct: 10 SGTEC-IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 68
Query: 203 EA 204
E
Sbjct: 69 EG 70
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 37.7 bits (86), Expect = 0.051, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
+G+ C +A + Y ++ E+ +K D++ ++ + WW+ +N + G P+ ++K++
Sbjct: 6 SGRRCQVA-FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 64
>pdb|2K7B|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 N-Domain
Length = 76
Score = 37.7 bits (86), Expect = 0.052, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 1491 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPEFEAILDLVD 1547
+ ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q ++
Sbjct: 7 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ----------IN 56
Query: 1548 PNRDGHVSLQEYMAFM 1563
N GHV +++ M
Sbjct: 57 MNLGGHVDFDDFVELM 72
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 37.7 bits (86), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
V+ALYDY ++S +K D + +L + +WWK ++G++P+ YV ++++
Sbjct: 11 VVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDS 66
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its Relationship
To Sh2 In The Sh(32) Construct, 20 Structures
Length = 62
Score = 37.7 bits (86), Expect = 0.058, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
G +ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 4 GGSLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 58
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
V+ALYDY ++S +K D + +L + +WWK ++G++P+ YV ++++
Sbjct: 5 VVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDS 60
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 37.7 bits (86), Expect = 0.058, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
G V AL+D+ + E+ ++ D + ++++++ +WWK + + G P YV
Sbjct: 1 GSTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 37.7 bits (86), Expect = 0.058, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
G V AL+D+ + E+ ++ D + ++++++ +WWK + + G P YV
Sbjct: 1 GSTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 37.4 bits (85), Expect = 0.063, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKMEA 204
V+ALYDY ++S +K D + +L + +WWK ++G++P+ YV ++++
Sbjct: 6 VVALYDYYSPFSWDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVDS 61
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 37.4 bits (85), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKME 203
V+ALYDY ++S +K D + +L + +WWK ++G++P+ YV +++
Sbjct: 2 IVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSLATRKEGYIPSNYVARVD 57
>pdb|3OX6|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX6|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 37.4 bits (85), Expect = 0.065, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 1491 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPEFEAILDLVD 1547
+ ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q ++
Sbjct: 8 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ----------IN 57
Query: 1548 PNRDGHVSLQEYMAFMISKETRQNSSLV 1575
N GHV +++ M K + + ++
Sbjct: 58 MNLGGHVDFDDFVELMGPKLLAETADMI 85
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNR 1550
+KE F+ FD + G+++ +E + +RA LG+ + G D E I+ VD N
Sbjct: 86 GVKELRDAFREFDTNGDGEISTSELREAMRALLGHQV-----GHRD--IEEIIRDVDLNG 138
Query: 1551 DGHVSLQEYMAFM 1563
DG V +E++ M
Sbjct: 139 DGRVDFEEFVRMM 151
>pdb|3OX5|A Chain A, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|B Chain B, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|C Chain C, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|D Chain D, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|E Chain E, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
pdb|3OX5|F Chain F, Crystal Structure Of The Calcium Sensor Calcium-Binding
Protein 1 (Cabp1)
Length = 153
Score = 37.4 bits (85), Expect = 0.065, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 1491 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGY---DLPMVEEGQPDPEFEAILDLVD 1547
+ ++E F+ FDKDK G +N + +C+R +GY ++ ++E Q ++
Sbjct: 8 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQ----------IN 57
Query: 1548 PNRDGHVSLQEYMAFMISKETRQNSSLV 1575
N GHV +++ M K + + ++
Sbjct: 58 MNLGGHVDFDDFVELMGPKLLAETADMI 85
Score = 31.6 bits (70), Expect = 4.0, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNR 1550
+KE F+ FD + G+++ +E + +R LG+ + G D E I+ VD N
Sbjct: 86 GVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQV-----GHRD--IEEIIRDVDLNG 138
Query: 1551 DGHVSLQEYMAFM 1563
DG V +E++ M
Sbjct: 139 DGRVDFEEFVRMM 151
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 37.4 bits (85), Expect = 0.067, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSTYI 58
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding
Length = 68
Score = 37.4 bits (85), Expect = 0.072, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKV-EVNDRQGFVP 195
V+ YD+ ++ E+S+K+ DVL +L+ + K WWKV + ++G+VP
Sbjct: 11 VLCNYDFQARNSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQEGYVP 56
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 37.4 bits (85), Expect = 0.074, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
G V AL+D+ + E+ ++ D + ++++++ +WWK + + G P YV
Sbjct: 1 GPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 37.0 bits (84), Expect = 0.079, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
+G +ALYDY ++S K + +L+ ++ DWW+ G++P+ YV +
Sbjct: 4 SGVTLFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVAPV 63
Query: 203 EA 204
++
Sbjct: 64 DS 65
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
Length = 134
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 1498 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLV---DPNRDGHV 1554
+++K D D GKL + E + + GY E ++D + D N DG++
Sbjct: 79 ILYKLMDADGDGKLTKEEVTTFFKKFGY--------------EKVVDQIMKADANGDGYI 124
Query: 1555 SLQEYMAF 1562
+L+E++AF
Sbjct: 125 TLEEFLAF 132
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 37.0 bits (84), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 20 NKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHL 79
N LQ+ASQ Q +++ D+ +L+E+ + G VQ L+ + DV
Sbjct: 737 NTLQQASQAQ-VDKSDYDMVDYLNELRESCLEAYTG----IVQGLKGDQENVHPDVMLVQ 791
Query: 80 DRIESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDL-EAFGNTILGLRE 129
R+E + + F++H DED ++ ++ L+ DL AFG +L L E
Sbjct: 792 PRVEFILS----FIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 838
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 37.0 bits (84), Expect = 0.081, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
V A +++ + + E+S K DV+ + WW+ +N R G+ P+ YV++++A
Sbjct: 11 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65
>pdb|2B1U|A Chain A, Solution Structure Of Calmodulin-Like Skin Protein C
Terminal Domain
Length = 71
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRD 1551
L++ + F+ FD+D G + E + + LG LP E +A++ D ++D
Sbjct: 4 GLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQ-------EELDAMIREADVDQD 56
Query: 1552 GHVSLQEYMAFMISKE 1567
G V+ +E+ A M+++E
Sbjct: 57 GRVNYEEF-ARMLAQE 71
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 20 NKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHL 79
N LQ+ASQ Q +++ D+ +L+E+ + G VQ L+ + DV
Sbjct: 737 NTLQQASQAQ-VDKSDYDMVDYLNELRESCLEAYTG----IVQGLKGDQENVHPDVMLVQ 791
Query: 80 DRIESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDL-EAFGNTILGLRE 129
R+E + + F++H DED ++ ++ L+ DL AFG +L L E
Sbjct: 792 PRVEFILS----FIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 838
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 20 NKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHL 79
N LQ+ASQ Q +++ D+ +L+E+ + G VQ L+ + DV
Sbjct: 612 NTLQQASQAQ-VDKSDYDMVDYLNELRESCLEAYTGI----VQGLKGDQENVHPDVMLVQ 666
Query: 80 DRIESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDL-EAFGNTILGLRE 129
R+E + + F++H DED ++ ++ L+ DL AFG +L L E
Sbjct: 667 PRVEFILS----FIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 713
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYVKKMEA 204
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+ + +
Sbjct: 86 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNS 140
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 37.0 bits (84), Expect = 0.088, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
AL +Y K+P ++ K DV+ L +++W++ E+N G PA+ V+
Sbjct: 12 ALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVE 60
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 37.0 bits (84), Expect = 0.091, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKK 201
E V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 15 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 69
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 37.0 bits (84), Expect = 0.096, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 6 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 55
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 37.0 bits (84), Expect = 0.096, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 8 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 57
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 37.0 bits (84), Expect = 0.096, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 4 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 53
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 37.0 bits (84), Expect = 0.098, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKK 201
E V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLNLMARK 75
>pdb|3EKJ|A Chain A, Calcium-Free Gcamp2 (Calcium Binding Deficient Mutant)
Length = 449
Score = 37.0 bits (84), Expect = 0.098, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 1468 LGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527
LG ++++N Q+ +E+ + EF F FDKD G + + + +R+LG
Sbjct: 293 LGHKLEYNTRDQL--------TEEQIAEFKEAFSLFDKDGDGGITTKQLGTVMRSLG--- 341
Query: 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNS 1572
+ + E + +++ V + +G + +++ M K +S
Sbjct: 342 ----QNPTEAELQDMINEVGADGNGTIDFPQFLTMMARKMKDTDS 382
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLNLMARK 75
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKK 201
E V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 36.6 bits (83), Expect = 0.10, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKK 201
V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 1 LTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG-------QNPTEAELQDMINEVD 53
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 54 ADGNGTIDFPEFLNLMARK 72
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V AL+D+ + E+ ++ D + ++++++ +WWK + + G P YV
Sbjct: 3 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 1494 KEFSMM-FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG 1552
KE ++ FK FD D +GK++ E K R G D +E D +++L VD N DG
Sbjct: 128 KEVCLIPFKFFDIDGNGKISVEELK---RIFGRD--DIENPLIDKAIDSLLQEVDLNGDG 182
Query: 1553 HVSLQEYMAFMISKE 1567
+ E+M M K+
Sbjct: 183 EIDFHEFMLMMSKKK 197
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 1499 MFKHFDKDKSGKLNQTEFKSCLRALGYD-LPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1557
+F D D SG L+ E L+ +GY +P P+ +L +D N G +
Sbjct: 62 IFIALDVDNSGTLSSQEILDGLKKIGYQKIP--------PDIHQVLRDIDSNASGQIHYT 113
Query: 1558 EYMAFMISKET 1568
+++A I K+T
Sbjct: 114 DFLAATIDKQT 124
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKV-EVNDRQGFVPAAYV 199
G E V+A+YD+ ++ +++ +L N+ WW+ + +G++P+ YV
Sbjct: 1 GSEIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYV 55
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 20 NKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHL 79
N LQ+ASQ Q +++ D+ +L+E+ + G VQ L+ + DV
Sbjct: 737 NTLQQASQAQ-VDKSDFDMVDYLNELRESCLEAYTGI----VQGLKGDQENVHPDVMLVQ 791
Query: 80 DRIESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDL-EAFGNTILGLRE 129
R+E + + F++H DED ++ ++ L+ DL AFG +L L E
Sbjct: 792 PRVEFILS----FIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE 838
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 12 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 61
>pdb|3EG1|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG1|B Chain B, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG2|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Length = 63
Score = 36.6 bits (83), Expect = 0.12, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 9 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSQYI 58
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 33/55 (60%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEA 204
V A +++ + + E+S+ K D++ + WW+ +N R G+ P+ YV+++++
Sbjct: 13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS 67
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKK 201
V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 3 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 55
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal Sh3
Domain Of C-Crk
Length = 57
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKK 201
E V AL+D+ ++ KK D+L + + + WW E ++ ++G +P YV+K
Sbjct: 2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V ALYD+ E++ K +++T+L+ ++ +WW+ E + G P+ +V
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
AL +T K ++ K D++T+L ++WW EV+ +G+ P +YVK
Sbjct: 15 ALCSWTAKKDNHLNFSKHDIITVL-EQQENWWFGEVHGGRGWFPKSYVK 62
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 36.2 bits (82), Expect = 0.14, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSN---NKDWWKVEVNDRQGFVPAAY 198
V AL+DY+ + E+S ++ + +T+L + DWW ++ ++G+VP Y
Sbjct: 157 VYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp) From
Human Epithelial Cells
Length = 148
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + +R+LG + + E ++ +D
Sbjct: 4 LTEEQVTEFKEAFSLFDKDGDGCITTRELGTVMRSLG-------QNPTEAELRDMMSEID 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G V E++ M K
Sbjct: 57 RDGNGTVDFPEFLGMMARK 75
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F+ FDKD +G ++ E + + LG L D E + ++ D + DG V+ +E+
Sbjct: 89 FRVFDKDGNGFVSAAELRHVMTRLGEKLS-------DEEVDEMIRAADTDGDGQVNYEEF 141
Query: 1560 MAFMISK 1566
+ ++SK
Sbjct: 142 VRVLVSK 148
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 147 KECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
++C + L++Y ++ E+ +K D++ + + WW +N++ G P+ +VK++E
Sbjct: 8 RQCKV-LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE 63
>pdb|2I2R|E Chain E, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|F Chain F, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|G Chain G, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|H Chain H, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|M Chain M, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|N Chain N, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|O Chain O, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
pdb|2I2R|P Chain P, Crystal Structure Of The Kchip1KV4.3 T1 COMPLEX
Length = 180
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1554
F +D +K G +N+ E ++A+ Y P++ E P + +D N+DG V
Sbjct: 95 FNLYDINKDGYINKEEMMDIVKAIYDMMGAYTYPVLAEDTPRQHVDVFFQKMDKNKDGIV 154
Query: 1555 SLQEYM 1560
+L E++
Sbjct: 155 TLDEFL 160
>pdb|2GGM|A Chain A, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
pdb|2GGM|B Chain B, Human Centrin 2 Xeroderma Pigmentosum Group C Protein
Complex
Length = 172
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 1473 QHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEE 1532
+ N + Q +D +E FK FD D++GK++ K + LG +L
Sbjct: 83 KXNFGDFLTVXTQKXSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENL----- 137
Query: 1533 GQPDPEFEAILDLVDPNRDGHVSLQEYM 1560
D E + +D D + DG VS QE++
Sbjct: 138 --TDEELQEXIDEADRDGDGEVSEQEFL 163
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
FK FDKD SGK++ E + M E E+I++ VD N+DG V E+
Sbjct: 423 FKMFDKDGSGKISTKELFKLFSQADSSIQM-------EELESIIEQVDNNKDGEVDFNEF 475
Query: 1560 MAFM 1563
+ +
Sbjct: 476 VEML 479
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase
Length = 77
Score = 35.8 bits (81), Expect = 0.21, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDR---------QGFVPAAYVKK 201
+AL+DY ++ ++S + D L +L+++++ WW ++ QG++P+ YV +
Sbjct: 11 VALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
>pdb|1S6C|A Chain A, Crystal Structure Of The Complex Between Kchip1 And Kv4.2
N1-30
Length = 183
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1554
F +D +K G +N+ E ++A+ Y P+++E P + +D N+DG V
Sbjct: 98 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 157
Query: 1555 SLQEYM 1560
+L E++
Sbjct: 158 TLDEFL 163
>pdb|2RO8|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 1 N-Terminal Domain
Length = 79
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++++ + EF F FDKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLG-------QNPTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E++ M K
Sbjct: 57 ADGNGTIDFPEFLNLMARK 75
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 35.4 bits (80), Expect = 0.23, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
V A +++ + + E+S K DV+ + WW+ N R G+ P+ YV+++
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 59
>pdb|2NZ0|A Chain A, Crystal Structure Of Potassium Channel Kv4.3 In Complex With
Its Regulatory Subunit Kchip1 (Casp Target)
pdb|2NZ0|C Chain C, Crystal Structure Of Potassium Channel Kv4.3 In Complex With
Its Regulatory Subunit Kchip1 (Casp Target)
Length = 180
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1554
F +D +K G +N+ E ++A+ Y P+++E P + +D N+DG V
Sbjct: 95 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 154
Query: 1555 SLQEYM 1560
+L E++
Sbjct: 155 TLDEFL 160
>pdb|1S1E|A Chain A, Crystal Structure Of Kv Channel-Interacting Protein 1
(Kchip-1)
Length = 224
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1554
F +D +K G +N+ E ++A+ Y P+++E P + +D N+DG V
Sbjct: 131 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 190
Query: 1555 SLQEYM 1560
+L E++
Sbjct: 191 TLDEFL 196
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 35.4 bits (80), Expect = 0.26, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
V ALYD+ E++ K +++ +L+ ++ +WWK E + G P+ +V
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 146 GKECVI-ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
G + V+ A +++ + + E+S K DV+ + WW+ N R G+ P+ YV+++
Sbjct: 4 GSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI 61
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
AL D+ E+ +K+D++T+++ ++ W E+N +G+ PA +V+ ++
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLD 63
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal
Growth Factor Receptor Pathway Substrate 8-Like Protein
Length = 68
Score = 35.4 bits (80), Expect = 0.27, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 153 LYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQ-GFVP 195
LYD+T ++ E+S+ K +VL +L + + WWK+ Q G+VP
Sbjct: 13 LYDFTARNANELSVLKDEVLEVL-EDGRQWWKLRSRSGQAGYVP 55
>pdb|1H4B|A Chain A, Solution Structure Of The Birch Pollen Allergen Bet V 4
Length = 84
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 1499 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1558
+FK FD + GK++ E L+ LG P E + ++ +D + DG +S QE
Sbjct: 14 IFKRFDANGDGKISAAELGEALKTLGSITP--------DEVKHMMAEIDTDGDGFISFQE 65
Query: 1559 YMAFMISKETRQNSSLV 1575
+ F R N L+
Sbjct: 66 FTDF-----GRANRGLL 77
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 35.4 bits (80), Expect = 0.28, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 47 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 96
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSN-NKDWWKVEVNDRQGFVPAAYV 199
+ALYD+ +S+ K + L +L N N +W + + + QG+VP+ Y+
Sbjct: 44 VALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYI 93
>pdb|2L2E|A Chain A, Solution Nmr Structure Of Myristoylated Ncs1p In Apo Form
Length = 190
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 1482 ARNQSGVSEDAL-----------KEFSMMFKHFDKD-KSGKLNQTEFKSCLRALGYDLPM 1529
++QS +S+D L KE +K F KD SG LN++EF+ + P
Sbjct: 2 GKSQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQF---FPF 58
Query: 1530 VEEGQPDPEFEAILDLVDPNRDGHVSLQEYM-AFMISKETRQNSSLV 1575
G P E + ++ D +++G++ +E++ A ++ N L+
Sbjct: 59 ---GDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLI 102
>pdb|3CTN|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 30
Structures
Length = 76
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1554
E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG +
Sbjct: 11 ELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGRI 63
Query: 1555 SLQEYMAFM 1563
E++ FM
Sbjct: 64 DYDEFLEFM 72
>pdb|1IH0|A Chain A, Structure Of The C-Domain Of Human Cardiac Troponin C In
Complex With Ca2+ Sensitizer Emd 57033
Length = 71
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 5 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 57
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 58 IDYDEFLEFM 67
>pdb|2I08|A Chain A, Solvation Effect In Conformational Changes Of Ef-Hand
Proteins: X-Ray Structure Of Ca2+-Saturated Double Mutant
Q41l-K75i Of N-Domain Of Calmodulin
Length = 78
Score = 35.0 bits (79), Expect = 0.33, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F +DKD G + E + +R+LG + + E + +++ VD
Sbjct: 4 LTEEQIAEFKEAFSLYDKDGDGTITTKELGTVMRSLGLN-------PTEAELQDMINEVD 56
Query: 1548 PNRDGHVSLQEYMAFM 1563
+ +G + E++ M
Sbjct: 57 ADGNGTIDFPEFLTMM 72
>pdb|2HQ8|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
pdb|2HQ8|B Chain B, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri In The Ca Loaded Apo Form
Length = 186
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)
Query: 1498 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1557
+M+ D DK G ++ EFK+ L+A+G DL D + + +D N++G +S
Sbjct: 106 IMYDCIDTDKDGYVSLPEFKAFLQAVGPDL-------TDDKAITCFNTLDFNKNGQISRD 158
Query: 1558 EYMA 1561
E++
Sbjct: 159 EFLV 162
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 35.0 bits (79), Expect = 0.37, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
V A +++ + + E+S K DV+ + WW+ N R G+ P+ YV++++
Sbjct: 9 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62
>pdb|1OZS|A Chain A, C-Domain Of Human Cardiac Troponin C In Complex With The
Inhibitory Region Of Human Cardiac Troponin I
Length = 73
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1554
E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG +
Sbjct: 8 ELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGRI 60
Query: 1555 SLQEYMAFM 1563
E++ FM
Sbjct: 61 DYDEFLEFM 69
>pdb|2KDH|A Chain A, The Solution Structure Of Human Cardiac Troponin C In
Complex With The Green Tea Polyphenol; (-)-
Epigallocatechin-3-Gallate
pdb|2L98|A Chain A, Structure Of Trans-Resveratrol In Complex With The Cardiac
Regulatory Protein Troponin C
Length = 72
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 6 EELSDLFRMFDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 58
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 59 IDYDEFLEFM 68
>pdb|3UUN|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Dystrophin
pdb|3UUN|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Dystrophin
Length = 119
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 794 EANKQRTYIAAVKDLDFWLGEVESLLTSE-DSGKDLASVQNLIKKHQLVEADIQAHDDRI 852
E N R Y A++++ WL E L ++ + D+ V++ H+ D+ AH R+
Sbjct: 1 EVNLDR-YQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRV 59
Query: 853 KDMNGQADSLIDSGQF---DASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFR 909
++ LI +G+ + + +QE+ +N R+E + R A + + + LH+
Sbjct: 60 GNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECL------RVASMEKQSNLHRVLM 113
Query: 910 DIADE 914
D+ ++
Sbjct: 114 DLQNQ 118
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 369 EQAENWMSAREAFLNAE-EVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIA 427
E+ +W+ + E L A+ E+ + + V+ HE + + AH+ ++G + L +LI
Sbjct: 12 EEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71
Query: 428 ADHYA---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 461
+ + ++ + RW L+ A +EK+S L
Sbjct: 72 TGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNL 108
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 593 EQAENWMSAREAFLNAE-EVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIA 651
E+ +W+ + E L A+ E+ + + V+ HE + + AH+ ++G + L +LI
Sbjct: 12 EEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71
Query: 652 ADHYA---AKPIDDKRKQVLDRWRLLKEALIEKRSRL 685
+ + ++ + RW L+ A +EK+S L
Sbjct: 72 TGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNL 108
>pdb|1FI5|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin C
Bound To The N Terminal Domain Of Cardiac Troponin I.
pdb|1SBJ|A Chain A, Nmr Structure Of The Mg2+-Loaded C Terminal Domain Of
Cardiac Troponin C Bound To The N Terminal Domain Of
Cardiac Troponin I
pdb|1SCV|A Chain A, Nmr Structure Of The C Terminal Domain Of Cardiac Troponin C
Bound To The N Terminal Domain Of Cardiac Troponin I
Length = 81
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHV 1554
E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG +
Sbjct: 16 ELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGRI 68
Query: 1555 SLQEYMAFM 1563
E++ FM
Sbjct: 69 DYDEFLEFM 77
>pdb|2LMT|A Chain A, Nmr Structure Of Androcam
pdb|2LMU|A Chain A, Androcam At High Calcium
pdb|2LMV|A Chain A, Androcam At High Calcium With Three Explicit Ca2+
Length = 148
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDL 1545
S ++E+ + EF F FDK+ +GK+ E + +R LG + + E + ++
Sbjct: 2 SELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLG-------QNPTEAELQDLIAE 54
Query: 1546 VDPNRDGHVSLQEYMAFMISKETRQNSS 1573
+ N +G ++ E+ M +K+ R+ +
Sbjct: 55 AENNNNGQLNFTEFCGIM-AKQMRETDT 81
>pdb|1AJ4|A Chain A, Structure Of Calcium-Saturated Cardiac Troponin C, Nmr, 1
Structure
Length = 161
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE--VNDRQGFVPAAYVKKM 202
+G +ALYDY ++S K + +L DWW+ G++P+ YV +
Sbjct: 4 SGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPV 63
Query: 203 EA 204
++
Sbjct: 64 DS 65
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKME 203
I +DY + E+++ +++T + + WW+ ++N R+G P +V++++
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK 57
>pdb|1DTL|A Chain A, Crystal Structure Of Calcium-Saturated (3ca2+) Cardiac
Troponin C Complexed With The Calcium Sensitizer Bepridil
At 2.15 A Resolution
pdb|1J1D|A Chain A, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|D Chain D, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|A Chain A, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|D Chain D, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 161
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199
AL+ Y P ++ ++ D++ +L+ N++W + E + G P +V
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57
>pdb|1Y6W|A Chain A, Trapped Intermediate Of Calmodulin
Length = 148
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + R+LG + P + E + ++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLGCN-PT------EAELQDXINEVD 56
Query: 1548 PNRDGHVSLQEYMA 1561
+ +G ++ E++
Sbjct: 57 ADGNGTINFPEFLT 70
>pdb|1XFX|O Chain O, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|P Chain P, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|Q Chain Q, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|R Chain R, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|S Chain S, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|T Chain T, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
Length = 149
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + R+LG + + E + ++ VD
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLG-------QNPTEAELQDXINEVD 57
Query: 1548 PNRDGHVSLQEYMA 1561
+ +G + E++
Sbjct: 58 ADGNGTIDFPEFLT 71
>pdb|2JT3|A Chain A, Solution Structure Of F153w Cardiac Troponin C
Length = 161
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 148 IDYDEWLEFM 157
>pdb|1LA0|A Chain A, Solution Structure Of Calcium Saturated Cardiac Troponin C
In The Troponin C-Troponin I Complex
Length = 161
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLEELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|1NIW|A Chain A, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|C Chain C, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|E Chain E, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1NIW|G Chain G, Crystal Structure Of Endothelial Nitric Oxide Synthase
Peptide Bound To Calmodulin
pdb|1QX7|I Chain I, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|R Chain R, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|A Chain A, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|B Chain B, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
pdb|1QX7|M Chain M, Crystal Structure Of Apocam Bound To The Gating Domain Of
Small Conductance Ca2+-Activated Potassium Channel
Length = 148
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
++E+ + EF F FDKD G + E + R+LG + + E + ++ VD
Sbjct: 4 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVXRSLG-------QNPTEAELQDXINEVD 56
Query: 1548 PNRDGHVSLQEYMA 1561
+ +G + E++
Sbjct: 57 ADGNGTIDFPEFLT 70
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 33.9 bits (76), Expect = 0.69, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYVK 200
E V+ + +T + ++ ++ + L +L+ N+DWW+ G VPA YV+
Sbjct: 119 EVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172
>pdb|3O4Y|A Chain A, Crystal Structure Of Cad Domain Of The Plasmodium Vivax
Cdpk, Pvx_11610
Length = 196
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F H D++ G + + + + L G LP P F+ +LD +D + G++ E+
Sbjct: 61 FLHLDEEGKGNITKLQLRKGLERSGLMLP--------PNFDLLLDQIDSDGSGNIDYTEF 112
Query: 1560 MAFMISK 1566
+A I +
Sbjct: 113 LAAAIDR 119
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 33.9 bits (76), Expect = 0.79, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVPAAYVK-KME 203
E V+ + +T + ++ ++ + L +L+ N+DWW+ G VPA YV+ +ME
Sbjct: 148 EVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQME 205
>pdb|1X6G|A Chain A, Solution Structures Of The Sh3 Domain Of Human
Megakaryocyte-Associated Tyrosine-Protein Kinase
Length = 81
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNS-NNKDWWKVE--VNDRQGFVPAAYVKK 201
G +C+ ++T P E++ +K DV+T+L + NK W++V+ + ++G + A +++
Sbjct: 17 GTQCITKC-EHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRE 74
>pdb|2L1W|A Chain A, The Solution Structure Of Soybean Calmodulin Isoform 4
Complexed With The Vacuolar Calcium Atpase Bca1 Peptide
Length = 149
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+SE+ + +F F FDKD G + E + +R+L ++ + E + ++ VD
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSL-------DQNPTEEELQDMISEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E+++ M K
Sbjct: 57 ADGNGTIEFDEFLSLMAKK 75
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWW--KVEVNDRQGFVPAAYV 199
IA +++ + E+S +K + +TLL +++W+ ++ RQG P YV
Sbjct: 10 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 30/49 (61%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
A +D+ ++ +E+ ++K D++ + +++W++ E + R G P Y++
Sbjct: 12 AKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 147 KECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
++C + L++Y ++ E+ +K D++ + + WW +N++ G P+ +VK
Sbjct: 2 RQCKV-LFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|2ROA|A Chain A, Solution Structure Of Calcium Bound Soybean Calmodulin
Isoform 4 N-Terminal Domain
Length = 79
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+SE+ + +F F FDKD G + E + +R+L ++ + E + ++ VD
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSL-------DQNPTEEELQDMISEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E+++ M K
Sbjct: 57 ADGNGTIEFDEFLSLMAKK 75
>pdb|2KSZ|A Chain A, The Solution Structure Of The Magnesium Bound Soybean Calmod
Isoform 4 N-Domain
Length = 76
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+SE+ + +F F FDKD G + E + +R+L ++ + E + ++ VD
Sbjct: 4 LSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSL-------DQNPTEEELQDMISEVD 56
Query: 1548 PNRDGHVSLQEYMAFMISK 1566
+ +G + E+++ M K
Sbjct: 57 ADGNGTIEFDEFLSLMAKK 75
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 33.1 bits (74), Expect = 1.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKK 201
+G+E +A+ DY ++S + + + +L DWW E G++PA +V K
Sbjct: 6 SGEE-FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 1493 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1528
++ + +F+ FD DKSG ++ E + + A G+ LP
Sbjct: 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLP 641
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 152 ALYDYT-EKSPREVSMKKSDVLTLLNSNNKDW--WKVEVNDRQGFVPAAYVK 200
A YD+ SP E+ +KK DV+ + W K+ ++G+VP AY+K
Sbjct: 5 AAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56
>pdb|3DD4|A Chain A, Structural Basis Of Kchip4a Modulation Of Kv4.3 Slow
Inactivation
Length = 229
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDL------PMVEEGQPDPEFEAILDLVDPNRDGH 1553
F +D +K G + + E ++A+ YD+ P+++E P E +D N+DG
Sbjct: 144 FNLYDINKDGYITKEEMLDIMKAI-YDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGV 202
Query: 1554 VSLQEYM 1560
V++ E++
Sbjct: 203 VTIDEFI 209
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWW--KVEVNDRQGFVPAAYV 199
IA +++ + E+S +K + +TLL +++W+ ++ RQG P YV
Sbjct: 11 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 146 GKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKD--WWKVEVNDRQGFVP 195
KE L+ YT + E++ ++ +++ L++ + WWK E+N ++G P
Sbjct: 5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFP 56
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 154 YDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVE-VNDRQGFVP 195
YD+ ++ E+S+ K DVL +L+ + + WWKV + GFVP
Sbjct: 8 YDFVARNSSELSVMKDDVLEILD-DRRQWWKVRNASGDSGFVP 49
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWW--KVEVNDRQGFVPAAYVKKM 202
A+YDY EVS K D + + + ++ W V+ R G +PA YV+ +
Sbjct: 8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI 60
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKKM 202
T K V AL+DY + E++ KS ++ + + WW+ + +Q + P+ YV++M
Sbjct: 1 TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 59
>pdb|2HPS|A Chain A, Crystal Structure Of Coelenterazine-binding Protein From
Renilla Muelleri
Length = 186
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 1498 MMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQ 1557
+ + D DK G ++ EFK+ L+A+G DL D + + +D N++G +S
Sbjct: 106 IXYDCIDTDKDGYVSLPEFKAFLQAVGPDL-------TDDKAITCFNTLDFNKNGQISRD 158
Query: 1558 EYMA 1561
E++
Sbjct: 159 EFLV 162
>pdb|2JT8|A Chain A, Solution Structure Of The F153-To-5-Flurotryptophan Mutant
Of Human Cardiac Troponin C
Length = 161
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ FDK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMFDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1554 VSLQEYMAFM 1563
+ E + FM
Sbjct: 148 IDYDEXLEFM 157
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLN-SNNKDWWKVEVNDRQ-GFVPAAYVKKM 202
V ALYDY + E+S K D LT L + + W + ++ Q G PA YV+ +
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen Phl
P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen Phl
P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 1499 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1558
+FK FD + GK++ +E LR LG E + ++ +D + DG + E
Sbjct: 8 IFKRFDTNGDGKISLSELTDALRTLG--------STSADEVQRMMAEIDTDGDGFIDFNE 59
Query: 1559 YMAF 1562
+++F
Sbjct: 60 FISF 63
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 1499 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1558
+FK FD + GK++ +E LR LG E + ++ +D + DG + E
Sbjct: 7 IFKRFDTNGDGKISLSELTDALRTLG--------STSADEVQRMMAEIDTDGDGFIDFNE 58
Query: 1559 YMAF 1562
+++F
Sbjct: 59 FISF 62
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-RQGFVPAAYVKKM 202
T K V AL+DY + E++ KS ++ + + WW+ + +Q + P+ YV++M
Sbjct: 4 TFKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM 62
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F FD + G L+ E K ++ALG++LP E ILDL+D L +Y
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKRE----------ILDLIDEYDSEGRHLMKY 78
Query: 1560 MAFMI 1564
F I
Sbjct: 79 DDFYI 83
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 1491 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1550
D L E F+ FD D +GK++ + + LG E D E A+++ D +
Sbjct: 93 DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG-------ETLTDEELRAMIEEFDLDG 145
Query: 1551 DGHVSLQEYMA 1561
DG ++ E++A
Sbjct: 146 DGEINENEFIA 156
>pdb|2JT0|A Chain A, Solution Structure Of F104w Cardiac Troponin C
Length = 161
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ +DK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMWDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 153 LYDYTEKSPREVSMKKSDVLTLLN--SNNKDWWKVEVNDRQGFVPAAYVKKMEAG 205
LYDY + E+S+ +V+T+ + + DW E +++G VP Y++ + +G
Sbjct: 23 LYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSG 77
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean Calcium-Dependent
Protein Kinase-Alpha (Cdpk) In The Presence Of Ca2+ And
The Junction Domain (Jd)
Length = 188
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD 1547
+SE+ + +FK D D SG + E K L+ +G +L + E + ++D D
Sbjct: 4 LSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSEL-------MESEIKDLMDAAD 56
Query: 1548 PNRDGHVSLQEYMA 1561
++ G + E++A
Sbjct: 57 IDKSGTIDYGEFIA 70
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F +FDKD SG + E + + G D D + ++ +D + DG + E+
Sbjct: 88 FSYFDKDGSGYITLDEIQQACKDFGLD---------DIHIDDMIKEIDQDNDGQIDYGEF 138
Query: 1560 MAFM 1563
A M
Sbjct: 139 AAMM 142
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human Hypothetical
Protein Flj21522
Length = 68
Score = 32.0 bits (71), Expect = 2.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 153 LYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN-DRQGFVPA 196
LY++ ++PRE+++ + + L +L+ ++K WW V+ R G++P+
Sbjct: 13 LYEFEARNPRELTVVQGEKLEVLD-HSKRWWLVKNEAGRSGYIPS 56
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 151 IALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVND-----RQGFVPAAYVKKME 203
+ L+D+ ++ E+S + DV + + WW +++ QG+VP Y+ + E
Sbjct: 14 VGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEF-EAILDLVDPNRDGHVSLQE 1558
FK +D D +G +++ E + ++A+ + E EF + D +D N DG +SL+E
Sbjct: 94 FKLYDVDGNGCIDRGELLNIIKAI-RAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEE 152
Query: 1559 YM 1560
+M
Sbjct: 153 FM 154
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDR-QGFVPAAYVKKMEA 204
V ALYDY K E++ + ++ ++ WWK + R Q + P+ YV+ +
Sbjct: 10 VKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISG 65
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 150 VIALYDYTEKSPREVSMKKSDVLTLL-NSNNKDWWKVEVNDRQ-GFVPAAYVKKME 203
V ALYDY + E+S K D LT + + + + W K +++ Q G PA YV+ ++
Sbjct: 431 VRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486
>pdb|2OPO|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
pdb|2OPO|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
pdb|2OPO|C Chain C, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
pdb|2OPO|D Chain D, Crystal Structure Of The Calcium-Binding Pollen Allergen Che
A 3
Length = 86
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 13/77 (16%)
Query: 1499 MFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQE 1558
+FK FD + GK++ +E L+ LG P E ++ +D + DG +S E
Sbjct: 16 IFKRFDTNGDGKISSSELGDALKTLGSVTP--------DEVRRMMAEIDTDGDGFISFDE 67
Query: 1559 YMAFMISKETRQNSSLV 1575
+ F R N LV
Sbjct: 68 FTDF-----ARANRGLV 79
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 31.6 bits (70), Expect = 3.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNK-DWWKVE--VNDRQGFVPAAYVKK 201
+G +ALYDY ++S K + +L+++ DWW+ G++P+ YV
Sbjct: 4 SGVTLFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAP 63
Query: 202 MEA 204
+++
Sbjct: 64 VDS 66
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F FD + G L+ E K +ALG++LP E ILDL+D L +Y
Sbjct: 29 FSLFDXNNDGFLDYHELKVAXKALGFELPKRE----------ILDLIDEYDSEGRHLXKY 78
Query: 1560 MAFMI 1564
F I
Sbjct: 79 DDFYI 83
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 1491 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNR 1550
D L E F+ FD D +GK++ + + LG E D E A ++ D +
Sbjct: 93 DPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG-------ETLTDEELRAXIEEFDLDG 145
Query: 1551 DGHVSLQEYMA 1561
DG ++ E++A
Sbjct: 146 DGEINENEFIA 156
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 31.6 bits (70), Expect = 3.7, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 149 CVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKM 202
C +A + Y ++ E+ +K D++ ++ + WW+ +N + G P+ ++K++
Sbjct: 21 CQVA-FSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKEL 73
>pdb|1JBA|A Chain A, Unmyristoylated Gcap-2 With Three Calcium Ions Bound
Length = 204
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCL-------RALGYDLPMVEEGQ---PDPEFEAILDLVDPN 1549
FK +DKD++G +++ E + +A ++ ++G+ P+ + I LVD N
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDEN 160
Query: 1550 RDGHVSLQEYM 1560
DG +SL E++
Sbjct: 161 GDGQLSLNEFV 171
>pdb|1ZMZ|A Chain A, Solution Structure Of The N-Terminal Domain (M1-S98) Of
Human Centrin 2
Length = 98
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F FD D +G ++ E K +RALG++ P E E + ++ +D G ++ ++
Sbjct: 37 FDLFDADGTGTIDVKELKVAMRALGFE-PKKE------EIKKMISEIDKEGTGKMNFGDF 89
Query: 1560 MAFMISK 1566
+ M K
Sbjct: 90 LTVMTQK 96
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWW--KVEVNDRQGFVPAAYVK 200
A+YDY+ + EVS + D + + + W V+ R G +PA Y++
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|2JTZ|A Chain A, Solution Structure And Chemical Shift Assignments Of The
F104-To-5-Flurotryptophan Mutant Of Cardiac Troponin C
Length = 161
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E S +F+ DK+ G ++ E K L+A G E + + E ++ D N DG
Sbjct: 95 EELSDLFRMXDKNADGYIDLDELKIMLQATG-------ETITEDDIEELMKDGDKNNDGR 147
Query: 1554 VSLQEYMAFM 1563
+ E++ FM
Sbjct: 148 IDYDEFLEFM 157
>pdb|3PAT|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|2PAS|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin
pdb|1PVA|A Chain A, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
pdb|1PVA|B Chain B, Comparison Between The Crystal And The Solution Structures
Of The Ef Hand Parvalbumin (alpha Component From Pike
Muscle)
Length = 110
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 1499 MFKHFDKDKSGKLNQTEFKSCLRAL---GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVS 1555
+FK D D SG + + E K L++ G DL D E +A L D + DG +
Sbjct: 47 VFKAIDADASGFIEEEELKFVLKSFAADGRDL-------TDAETKAFLKAADKDGDGKIG 99
Query: 1556 LQEY 1559
+ E+
Sbjct: 100 IDEF 103
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F +FDKD SG + E + G + +EE D VD + DG + E+
Sbjct: 105 FTYFDKDGSGYITPDELQQACEEFGVEDVRIEELXRD---------VDQDNDGRIDYNEF 155
Query: 1560 MA 1561
+A
Sbjct: 156 VA 157
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 153 LYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVK 200
L+ + ++ E+ + +++ +L N +W V N ++G VP Y++
Sbjct: 13 LFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLE 60
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta At
2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta At
2.4 Angstroms
Length = 193
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMV-----EEGQPDPEFEAILDLVDPNRDGHV 1554
F +D D +G +++ E ++A+ + V +E P+ E I +D NRDG +
Sbjct: 105 FSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKL 164
Query: 1555 SLQEYM 1560
SL+E++
Sbjct: 165 SLEEFI 170
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 1476 LEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQP 1535
L Q +R SG+ + + F+ D+D S L+ EF+ L LG L E
Sbjct: 24 LRAQCLSRGASGI-----QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEA--- 75
Query: 1536 DPEFEAILDLVDPNRDGHVSLQEYM 1560
E + D N G + L+E++
Sbjct: 76 ----EGVCRKWDRNGSGTLDLEEFL 96
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRAL------GYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
FK +D D G + + E + A+ +LP EE P+ + I ++D N DG
Sbjct: 105 FKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPE-EENTPEKRVDRIFAMMDKNADGK 163
Query: 1554 VSLQEY 1559
++LQE+
Sbjct: 164 LTLQEF 169
>pdb|3KHE|A Chain A, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
pdb|3KHE|B Chain B, Crystal Structure Of The Calcium-Loaded Calmodulin-Like
Domain Of The Cdpk, 541.M00134 From Toxoplasma Gondii
Length = 191
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 1500 FKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEY 1559
F+ FD D SGK+ E LG + E D + +L D N DG V +E+
Sbjct: 129 FQQFDSDGSGKITNEE-------LGRLFGVTE--VDDETWHQVLQECDKNNDGEVDFEEF 179
Query: 1560 MAFM 1563
+ M
Sbjct: 180 VEMM 183
>pdb|2K7C|A Chain A, Nmr Structure Of Mg2+-Bound Cabp1 C-Domain
pdb|2K7D|A Chain A, Nmr Structure Of Ca2+-Bound Cabp1 C-Domain
Length = 72
Score = 30.4 bits (67), Expect = 7.8, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNR 1550
+KE F+ FD + G+++ +E + +R LG+ + G D E I+ VD N
Sbjct: 5 GVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQV-----GHRD--IEEIIRDVDLNG 57
Query: 1551 DGHVSLQEYMAFM 1563
DG V +E++ M
Sbjct: 58 DGRVDFEEFVRMM 70
>pdb|1MF8|B Chain B, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 170
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 1475 NLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQ 1534
+ ++ I+ +Q V D ++ F+ +D DK G ++ E L+ MV
Sbjct: 71 DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM------MVGNNL 124
Query: 1535 PDPEFEAILDLV----DPNRDGHVSLQEYMA 1561
D + + I+D D + DG +S +E+ A
Sbjct: 125 KDTQLQQIVDKTIINADKDGDGRISFEEFCA 155
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 30.4 bits (67), Expect = 8.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKV-EVNDRQGFVPAAYVK 200
TG+E IA+ D+T + +++ KK ++L ++ WW + +G VP Y++
Sbjct: 9 TGEE-YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLE 64
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 145 TGKECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEV-NDRQGFVPAAYVKKM 202
T K V AL+DY + E++ KS ++ + WW+ + +Q + P+ YV++M
Sbjct: 4 TFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62
>pdb|1JC2|A Chain A, Complex Of The C-Domain Of Troponin C With Residues 1-40 Of
Troponin I
Length = 76
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH 1553
+E + F+ FDK+ G ++ E LRA G ++EE + E ++ D N DG
Sbjct: 10 EELANCFRIFDKNADGFIDIEELGEILRATGE--HVIEE-----DIEDLMKDSDKNNDGR 62
Query: 1554 VSLQEYMAFM 1563
+ E++ M
Sbjct: 63 IDFDEFLKMM 72
>pdb|1TCO|B Chain B, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B,
Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus)
pdb|1AUI|B Chain B, Human Calcineurin Heterodimer
pdb|1M63|B Chain B, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|F Chain F, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 169
Score = 30.4 bits (67), Expect = 9.2, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 1475 NLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQ 1534
+ ++ I+ +Q V D ++ F+ +D DK G ++ E L+ MV
Sbjct: 70 DFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKM------MVGNNL 123
Query: 1535 PDPEFEAILDLV----DPNRDGHVSLQEYMA 1561
D + + I+D D + DG +S +E+ A
Sbjct: 124 KDTQLQQIVDKTIINADKDGDGRISFEEFCA 154
>pdb|2KXC|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Irtks-Sh3
And Espfu- R47 Complex
pdb|2LNH|B Chain B, Enterohaemorrhagic E. Coli (Ehec) Exploits A Tryptophan
Switch To Hijack Host F-Actin Assembly
Length = 67
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 147 KECVIALYDYTEKSPREV-SMKKSDVLTLLNSNNKDWW---KVEVNDRQGFVPAAYVKKM 202
K+ V ++ +T S + + S + DV+TLL KD W + +V+ +G+ P++Y K +
Sbjct: 6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLL 65
Query: 203 E 203
E
Sbjct: 66 E 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,098,801
Number of Sequences: 62578
Number of extensions: 1713681
Number of successful extensions: 5529
Number of sequences better than 100.0: 481
Number of HSP's better than 100.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 4606
Number of HSP's gapped (non-prelim): 888
length of query: 1575
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1463
effective length of database: 7,964,601
effective search space: 11652211263
effective search space used: 11652211263
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)