Query psy6935
Match_columns 1575
No_of_seqs 479 out of 3413
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 22:29:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0040|consensus 100.0 3E-142 6E-147 1259.3 151.4 1494 2-1573 760-2332(2399)
2 KOG0517|consensus 100.0 3E-139 7E-144 1260.8 159.3 1282 2-1444 606-1975(2473)
3 KOG0517|consensus 100.0 6E-120 1E-124 1093.7 155.4 1358 2-1477 712-2207(2473)
4 KOG0040|consensus 100.0 1.1E-93 2.4E-98 847.1 130.1 1234 3-1451 21-1351(2399)
5 cd00176 SPEC Spectrin repeats, 99.7 7.7E-16 1.7E-20 170.6 29.2 210 798-1007 2-212 (213)
6 cd00176 SPEC Spectrin repeats, 99.7 8.5E-16 1.8E-20 170.3 29.1 210 904-1113 2-212 (213)
7 KOG0035|consensus 99.7 1.2E-16 2.7E-21 193.0 7.9 408 1117-1566 397-817 (890)
8 KOG4286|consensus 99.6 9E-12 1.9E-16 144.0 36.0 306 1011-1371 4-335 (966)
9 KOG4286|consensus 99.5 3.6E-12 7.8E-17 147.2 29.1 310 904-1223 3-337 (966)
10 PF12128 DUF3584: Protein of u 99.2 0.00023 5.1E-09 97.6 76.1 79 1084-1167 711-791 (1201)
11 cd05022 S-100A13 S-100A13: S-1 99.1 2.6E-10 5.6E-15 102.1 7.6 71 1490-1567 4-77 (89)
12 smart00150 SPEC Spectrin repea 99.1 1.8E-09 3.8E-14 103.0 12.8 101 362-462 1-101 (101)
13 PF00435 Spectrin: Spectrin re 99.0 2.9E-09 6.2E-14 102.4 13.5 104 360-463 2-105 (105)
14 smart00150 SPEC Spectrin repea 99.0 2.1E-09 4.6E-14 102.4 12.0 100 906-1005 2-101 (101)
15 COG5126 FRQ1 Ca2+-binding prot 99.0 1.2E-09 2.6E-14 107.5 8.2 68 1493-1567 91-158 (160)
16 PF00435 Spectrin: Spectrin re 99.0 9.8E-09 2.1E-13 98.6 14.5 104 1009-1112 2-105 (105)
17 cd05027 S-100B S-100B: S-100B 99.0 2E-09 4.2E-14 97.0 8.4 72 1490-1568 4-82 (88)
18 PF13499 EF-hand_7: EF-hand do 98.9 2.4E-09 5.2E-14 92.2 6.6 61 1496-1563 2-66 (66)
19 KOG0027|consensus 98.9 6.4E-09 1.4E-13 106.4 10.3 106 1454-1566 42-150 (151)
20 smart00027 EH Eps15 homology d 98.8 1.7E-08 3.8E-13 93.9 8.7 71 1487-1566 3-73 (96)
21 KOG0027|consensus 98.8 1.5E-08 3.3E-13 103.6 8.8 73 1488-1567 2-74 (151)
22 COG5126 FRQ1 Ca2+-binding prot 98.8 2.1E-08 4.6E-13 98.9 8.9 77 1483-1567 9-85 (160)
23 cd05026 S-100Z S-100Z: S-100Z 98.7 2.6E-08 5.7E-13 91.4 8.0 71 1490-1567 6-83 (93)
24 cd05029 S-100A6 S-100A6: S-100 98.7 3.6E-08 7.7E-13 88.8 8.2 72 1490-1568 6-82 (88)
25 cd05025 S-100A1 S-100A1: S-100 98.7 3.4E-08 7.5E-13 91.0 8.3 70 1491-1567 6-82 (92)
26 cd05031 S-100A10_like S-100A10 98.7 3.4E-08 7.3E-13 91.5 7.8 69 1491-1566 5-80 (94)
27 KOG0028|consensus 98.7 4.6E-08 1E-12 93.1 7.7 76 1485-1567 24-99 (172)
28 cd00213 S-100 S-100: S-100 dom 98.7 5.6E-08 1.2E-12 89.1 7.5 75 1490-1567 4-81 (88)
29 KOG0037|consensus 98.7 7.8E-08 1.7E-12 97.4 8.9 104 1448-1566 86-189 (221)
30 KOG0030|consensus 98.6 6.4E-08 1.4E-12 89.6 6.0 74 1487-1567 4-79 (152)
31 PF14658 EF-hand_9: EF-hand do 98.6 1.1E-07 2.3E-12 77.5 6.4 61 1498-1565 2-64 (66)
32 cd00052 EH Eps15 homology doma 98.6 1.2E-07 2.6E-12 82.0 6.7 61 1497-1566 2-62 (67)
33 PF12128 DUF3584: Protein of u 98.6 0.019 4.1E-07 79.3 81.4 156 366-530 223-378 (1201)
34 KOG0028|consensus 98.5 2.1E-07 4.5E-12 88.7 7.9 67 1492-1565 104-170 (172)
35 PF13833 EF-hand_8: EF-hand do 98.5 1.9E-07 4.2E-12 76.3 6.5 52 1507-1565 1-53 (54)
36 cd05023 S-100A11 S-100A11: S-1 98.5 3E-07 6.6E-12 83.0 8.2 71 1490-1567 5-82 (89)
37 cd00252 SPARC_EC SPARC_EC; ext 98.3 1.1E-06 2.4E-11 83.2 7.5 65 1489-1564 43-107 (116)
38 cd00051 EFh EF-hand, calcium b 98.3 2.4E-06 5.3E-11 72.7 7.2 61 1496-1563 2-62 (63)
39 PTZ00183 centrin; Provisional 98.2 6.8E-06 1.5E-10 85.7 11.2 66 1494-1566 90-155 (158)
40 PTZ00183 centrin; Provisional 98.2 3.4E-06 7.4E-11 87.9 9.0 74 1485-1565 8-81 (158)
41 KOG0030|consensus 98.2 3.2E-06 7E-11 78.6 7.3 65 1492-1564 86-150 (152)
42 KOG0031|consensus 98.2 4.2E-06 9E-11 79.3 7.7 72 1486-1568 24-95 (171)
43 cd05030 calgranulins Calgranul 98.2 3.8E-06 8.2E-11 76.3 7.2 75 1490-1567 4-81 (88)
44 PTZ00184 calmodulin; Provision 98.2 4.6E-06 9.9E-11 86.0 8.7 72 1487-1565 4-75 (149)
45 KOG0041|consensus 98.2 3.4E-06 7.3E-11 83.2 6.8 76 1485-1567 90-165 (244)
46 PTZ00184 calmodulin; Provision 98.2 1.3E-05 2.8E-10 82.6 11.4 65 1494-1565 84-148 (149)
47 KOG0031|consensus 98.1 1.3E-05 2.9E-10 76.0 9.1 71 1485-1564 94-164 (171)
48 KOG4240|consensus 98.1 0.0033 7.2E-08 79.4 32.4 335 557-901 249-599 (1025)
49 KOG0044|consensus 98.0 1E-05 2.2E-10 83.4 7.5 102 1462-1566 70-176 (193)
50 KOG0034|consensus 98.0 8.5E-06 1.8E-10 84.1 6.8 73 1494-1567 104-177 (187)
51 KOG0036|consensus 98.0 4.8E-06 1E-10 92.0 5.2 104 1464-1574 52-155 (463)
52 KOG4240|consensus 98.0 0.0018 3.9E-08 81.6 27.1 343 868-1220 241-599 (1025)
53 TIGR00606 rad50 rad50. This fa 97.9 0.36 7.8E-06 67.9 105.9 19 490-508 294-312 (1311)
54 PF00036 EF-hand_1: EF hand; 97.8 1.5E-05 3.2E-10 54.4 3.0 29 1495-1523 1-29 (29)
55 TIGR00606 rad50 rad50. This fa 97.8 0.47 1E-05 66.8 101.8 36 1151-1186 1119-1154(1311)
56 KOG0994|consensus 97.8 0.23 5E-06 62.6 52.6 189 332-527 1164-1363(1758)
57 PLN02964 phosphatidylserine de 97.7 0.00011 2.4E-09 90.3 10.5 72 1487-1565 172-243 (644)
58 cd05024 S-100A10 S-100A10: A s 97.7 0.00019 4E-09 63.8 8.4 73 1490-1566 4-77 (91)
59 PF13405 EF-hand_6: EF-hand do 97.7 3.6E-05 7.9E-10 54.1 3.0 30 1495-1524 1-31 (31)
60 KOG0044|consensus 97.7 7.8E-05 1.7E-09 77.0 6.5 109 1450-1566 20-129 (193)
61 KOG0994|consensus 97.6 0.46 1E-05 60.1 56.8 122 772-899 1163-1291(1758)
62 PF12763 EF-hand_4: Cytoskelet 97.6 0.00015 3.3E-09 67.2 6.5 70 1486-1565 2-71 (104)
63 PF00036 EF-hand_1: EF hand; 97.5 9.4E-05 2E-09 50.5 3.5 28 1538-1565 1-28 (29)
64 PLN02964 phosphatidylserine de 97.5 0.00014 3.1E-09 89.4 7.6 69 1486-1565 135-207 (644)
65 KOG0036|consensus 97.5 0.00031 6.8E-09 78.1 8.3 75 1487-1568 7-82 (463)
66 KOG0038|consensus 97.3 0.00042 9E-09 64.9 5.7 64 1496-1566 110-178 (189)
67 KOG0377|consensus 97.3 0.00047 1E-08 76.6 6.8 63 1495-1564 548-614 (631)
68 KOG0046|consensus 97.2 0.00062 1.4E-08 77.8 7.5 80 1485-1569 10-89 (627)
69 KOG0161|consensus 97.1 2.7 5.8E-05 59.0 104.7 52 1084-1135 1566-1625(1930)
70 PRK04778 septation ring format 97.0 2.1 4.5E-05 54.4 48.9 453 660-1151 62-544 (569)
71 PF06160 EzrA: Septation ring 96.9 2 4.4E-05 54.1 50.8 123 434-562 56-185 (560)
72 PRK04863 mukB cell division pr 96.9 4.1 8.9E-05 56.8 97.9 342 784-1144 895-1270(1486)
73 KOG4065|consensus 96.7 0.0022 4.8E-08 57.5 4.7 72 1486-1562 61-142 (144)
74 PF13202 EF-hand_5: EF hand; P 96.7 0.0013 2.9E-08 43.2 2.4 25 1496-1520 1-25 (25)
75 PRK12309 transaldolase/EF-hand 96.6 0.005 1.1E-07 72.1 8.2 52 1494-1565 334-385 (391)
76 PRK02224 chromosome segregatio 96.6 5.4 0.00012 54.3 68.7 17 978-994 624-640 (880)
77 PRK04778 septation ring format 96.6 3.7 8E-05 52.1 51.7 164 870-1047 378-546 (569)
78 PF14788 EF-hand_10: EF hand; 96.4 0.0075 1.6E-07 46.6 5.3 49 1510-1565 1-49 (51)
79 PF13202 EF-hand_5: EF hand; P 96.4 0.0036 7.8E-08 41.1 3.2 25 1539-1563 1-25 (25)
80 KOG0037|consensus 96.4 0.0081 1.8E-07 61.9 6.9 67 1493-1565 56-122 (221)
81 PRK04863 mukB cell division pr 96.3 9.1 0.0002 53.6 97.5 159 1002-1165 901-1071(1486)
82 PF13514 AAA_27: AAA domain 96.2 9.7 0.00021 53.0 82.2 316 614-964 148-481 (1111)
83 KOG0034|consensus 96.2 0.014 3E-07 60.7 7.6 67 1488-1565 27-95 (187)
84 PF10591 SPARC_Ca_bdg: Secrete 95.6 0.0091 2E-07 56.8 3.2 62 1491-1561 51-112 (113)
85 KOG0035|consensus 95.5 0.02 4.3E-07 71.9 6.5 317 1011-1369 397-731 (890)
86 KOG4223|consensus 95.3 0.025 5.5E-07 61.9 5.5 70 1492-1567 161-230 (325)
87 PF08580 KAR9: Yeast cortical 95.1 15 0.00032 47.2 34.0 119 1081-1209 236-360 (683)
88 PF13405 EF-hand_6: EF-hand do 95.0 0.029 6.2E-07 39.4 3.3 27 1538-1564 1-27 (31)
89 PRK02224 chromosome segregatio 94.9 23 0.0005 48.3 76.2 74 840-918 479-553 (880)
90 PF06160 EzrA: Septation ring 94.3 21 0.00045 45.3 55.7 125 543-677 58-183 (560)
91 PRK03918 chromosome segregatio 94.1 33 0.00072 46.9 70.8 19 1141-1159 822-840 (880)
92 PRK03918 chromosome segregatio 93.7 38 0.00083 46.3 70.3 9 837-845 504-512 (880)
93 smart00054 EFh EF-hand, calciu 93.7 0.054 1.2E-06 36.8 2.4 28 1496-1523 2-29 (29)
94 PF13514 AAA_27: AAA domain 93.4 48 0.001 46.3 88.9 314 390-748 148-479 (1111)
95 KOG1955|consensus 93.2 0.18 3.9E-06 57.6 6.5 71 1486-1565 223-293 (737)
96 KOG4251|consensus 93.1 0.05 1.1E-06 56.1 1.9 66 1493-1563 100-166 (362)
97 smart00054 EFh EF-hand, calciu 93.0 0.11 2.4E-06 35.2 3.0 27 1539-1565 2-28 (29)
98 PF08580 KAR9: Yeast cortical 92.6 40 0.00087 43.4 34.4 117 975-1100 236-358 (683)
99 PF13833 EF-hand_8: EF-hand do 92.3 0.13 2.9E-06 41.7 3.1 32 1488-1522 22-53 (54)
100 PF14643 DUF4455: Domain of un 92.1 39 0.00084 41.9 47.5 211 869-1112 59-274 (473)
101 PF09279 EF-hand_like: Phospho 91.9 0.24 5.2E-06 44.6 4.7 66 1495-1568 1-72 (83)
102 KOG4223|consensus 91.7 0.13 2.8E-06 56.6 3.1 58 1497-1561 244-301 (325)
103 KOG2643|consensus 91.6 0.15 3.3E-06 58.0 3.6 72 1495-1566 234-315 (489)
104 COG1196 Smc Chromosome segrega 91.1 85 0.0018 44.1 78.7 55 764-818 441-496 (1163)
105 KOG0042|consensus 90.2 0.72 1.6E-05 54.6 7.3 80 1483-1569 582-661 (680)
106 PF13499 EF-hand_7: EF-hand do 90.2 0.19 4E-06 42.9 2.1 27 1494-1520 40-66 (66)
107 KOG0161|consensus 89.9 1.2E+02 0.0026 43.7 115.9 19 51-69 503-521 (1930)
108 cd05022 S-100A13 S-100A13: S-1 89.2 0.41 8.9E-06 43.4 3.6 31 1494-1524 47-77 (89)
109 KOG2243|consensus 88.4 3.5 7.7E-05 52.7 11.5 157 1381-1569 3968-4124(5019)
110 PF06008 Laminin_I: Laminin Do 88.1 52 0.0011 37.3 24.1 133 824-970 118-251 (264)
111 KOG0971|consensus 87.7 94 0.002 39.7 73.1 33 1301-1333 1015-1047(1243)
112 KOG4673|consensus 87.1 85 0.0019 38.7 61.1 84 904-1002 582-672 (961)
113 TIGR02169 SMC_prok_A chromosom 86.6 1.7E+02 0.0037 41.6 76.3 54 1084-1137 983-1038(1164)
114 KOG0377|consensus 85.8 1.5 3.3E-05 49.9 6.1 71 1494-1564 464-574 (631)
115 KOG1029|consensus 85.3 1.1 2.3E-05 54.6 4.9 68 1489-1565 190-257 (1118)
116 KOG2562|consensus 85.2 0.75 1.6E-05 53.2 3.5 62 1496-1567 280-345 (493)
117 KOG4674|consensus 85.1 2E+02 0.0043 41.0 136.2 177 399-575 398-602 (1822)
118 PF05042 Caleosin: Caleosin re 84.3 2.6 5.7E-05 42.5 6.4 73 1495-1567 8-126 (174)
119 cd00252 SPARC_EC SPARC_EC; ext 84.0 2.9 6.4E-05 40.0 6.4 25 1496-1520 82-106 (116)
120 PF06008 Laminin_I: Laminin Do 83.9 82 0.0018 35.6 28.7 134 930-1076 118-251 (264)
121 KOG4666|consensus 83.0 1.2 2.7E-05 48.6 3.8 63 1496-1567 298-361 (412)
122 KOG3866|consensus 82.9 1.2 2.7E-05 48.0 3.7 70 1497-1566 247-325 (442)
123 smart00027 EH Eps15 homology d 81.7 1.4 3.1E-05 40.8 3.4 38 1487-1527 40-82 (96)
124 COG5069 SAC6 Ca2+-binding acti 81.0 22 0.00047 41.7 12.7 141 1383-1527 378-518 (612)
125 KOG4578|consensus 80.9 1.6 3.4E-05 47.8 3.7 63 1495-1566 334-399 (421)
126 KOG3555|consensus 80.9 2.6 5.7E-05 46.6 5.3 67 1488-1565 244-310 (434)
127 cd05027 S-100B S-100B: S-100B 78.5 3.3 7.1E-05 37.6 4.5 30 1495-1524 52-81 (88)
128 cd05026 S-100Z S-100Z: S-100Z 78.1 3 6.5E-05 38.4 4.2 30 1494-1523 53-82 (93)
129 cd05031 S-100A10_like S-100A10 77.5 1.7 3.7E-05 40.2 2.4 34 1494-1527 51-84 (94)
130 COG1196 Smc Chromosome segrega 77.3 3.3E+02 0.0071 38.4 85.4 31 765-795 372-402 (1163)
131 PF14643 DUF4455: Domain of un 77.1 2E+02 0.0043 35.8 49.7 78 714-794 197-274 (473)
132 KOG2643|consensus 76.4 1.5 3.2E-05 50.4 2.0 57 1502-1567 207-263 (489)
133 KOG0976|consensus 74.3 2.5E+02 0.0054 35.6 50.3 20 1350-1369 908-927 (1265)
134 cd05029 S-100A6 S-100A6: S-100 73.7 3.4 7.3E-05 37.5 3.2 34 1488-1524 48-81 (88)
135 cd00213 S-100 S-100: S-100 dom 70.8 4.8 0.0001 36.6 3.6 29 1495-1523 52-80 (88)
136 cd05030 calgranulins Calgranul 70.5 4.4 9.6E-05 36.8 3.2 30 1494-1523 51-80 (88)
137 cd05025 S-100A1 S-100A1: S-100 70.4 4.2 9.1E-05 37.3 3.2 29 1495-1523 53-81 (92)
138 cd05023 S-100A11 S-100A11: S-1 70.2 4.6 0.0001 36.7 3.3 30 1495-1524 53-82 (89)
139 cd00052 EH Eps15 homology doma 69.3 5.1 0.00011 33.9 3.3 29 1495-1523 34-62 (67)
140 cd00051 EFh EF-hand, calcium b 69.2 4.1 9E-05 33.5 2.7 26 1495-1520 37-62 (63)
141 PF00261 Tropomyosin: Tropomyo 68.3 2E+02 0.0043 31.9 21.3 230 623-864 1-232 (237)
142 PF04912 Dynamitin: Dynamitin 67.5 2.8E+02 0.0061 33.4 25.0 58 829-887 87-144 (388)
143 PF05517 p25-alpha: p25-alpha 65.4 22 0.00047 36.3 7.4 68 1496-1567 4-71 (154)
144 KOG4251|consensus 64.5 9.4 0.0002 40.1 4.4 55 1501-1562 288-342 (362)
145 PF08726 EFhand_Ca_insen: Ca2+ 64.1 3.1 6.7E-05 35.4 0.8 54 1494-1562 6-66 (69)
146 PF04912 Dynamitin: Dynamitin 63.1 3.4E+02 0.0073 32.8 23.6 57 617-674 88-144 (388)
147 KOG4673|consensus 62.0 4E+02 0.0088 33.3 55.2 69 1011-1094 583-651 (961)
148 PF10174 Cast: RIM-binding pro 60.4 5.2E+02 0.011 34.0 72.8 55 435-489 111-166 (775)
149 PF14788 EF-hand_10: EF hand; 58.5 12 0.00026 29.6 3.0 29 1495-1523 22-50 (51)
150 KOG0038|consensus 58.4 11 0.00023 36.5 3.3 61 1502-1568 79-139 (189)
151 KOG1707|consensus 54.3 12 0.00026 45.5 3.6 70 1483-1561 304-373 (625)
152 KOG0169|consensus 53.6 25 0.00055 44.1 6.4 71 1488-1565 130-200 (746)
153 cd05024 S-100A10 S-100A10: A s 52.7 15 0.00033 33.3 3.2 30 1495-1524 49-78 (91)
154 PRK01156 chromosome segregatio 52.5 7.8E+02 0.017 33.7 66.5 15 1140-1154 834-848 (895)
155 PF12763 EF-hand_4: Cytoskelet 51.6 16 0.00035 34.2 3.4 34 1485-1521 37-70 (104)
156 PF14604 SH3_9: Variant SH3 do 51.1 0.8 1.7E-05 36.2 -4.5 47 153-199 2-48 (49)
157 PF05557 MAD: Mitotic checkpoi 50.1 75 0.0016 42.0 10.6 29 890-918 617-647 (722)
158 PRK12309 transaldolase/EF-hand 49.8 37 0.00081 40.4 6.9 27 1496-1522 359-385 (391)
159 KOG2562|consensus 49.8 34 0.00074 40.3 6.2 102 1453-1563 272-377 (493)
160 PF12325 TMF_TATA_bd: TATA ele 48.7 2.6E+02 0.0057 27.1 11.8 79 824-902 11-102 (120)
161 PF05557 MAD: Mitotic checkpoi 48.3 99 0.0021 40.9 11.2 90 931-1024 553-647 (722)
162 KOG0933|consensus 47.6 8.3E+02 0.018 32.5 69.7 231 400-646 266-502 (1174)
163 PF04065 Not3: Not1 N-terminal 46.8 1.4E+02 0.003 32.7 9.9 88 768-856 18-108 (233)
164 PRK10929 putative mechanosensi 45.7 1E+03 0.022 33.0 42.5 57 433-489 104-161 (1109)
165 KOG0971|consensus 45.5 8.3E+02 0.018 32.0 71.3 31 1042-1072 942-972 (1243)
166 COG4477 EzrA Negative regulato 45.3 6.7E+02 0.014 30.8 52.2 93 408-513 113-209 (570)
167 KOG0998|consensus 45.1 10 0.00022 50.1 1.5 71 1487-1566 276-346 (847)
168 PF11802 CENP-K: Centromere-as 44.5 4.9E+02 0.011 29.0 16.1 102 1033-1140 44-146 (268)
169 PF10498 IFT57: Intra-flagella 44.3 6.1E+02 0.013 30.1 17.2 27 767-793 278-304 (359)
170 PF08429 PLU-1: PLU-1-like pro 43.5 6.1E+02 0.013 29.8 19.1 307 596-934 1-333 (335)
171 PF10591 SPARC_Ca_bdg: Secrete 42.5 40 0.00086 32.3 4.6 24 1496-1519 90-113 (113)
172 PF05667 DUF812: Protein of un 42.0 8.6E+02 0.019 31.1 31.3 80 937-1026 507-589 (594)
173 PF00038 Filament: Intermediat 41.1 6.3E+02 0.014 29.3 28.8 263 615-905 17-292 (312)
174 smart00787 Spc7 Spc7 kinetocho 39.4 6.7E+02 0.014 29.1 25.6 94 417-510 190-284 (312)
175 PF14658 EF-hand_9: EF-hand do 39.3 24 0.00053 29.7 2.2 28 1495-1522 36-64 (66)
176 PF12325 TMF_TATA_bd: TATA ele 38.0 3.9E+02 0.0084 26.0 10.9 76 388-463 12-100 (120)
177 COG0419 SbcC ATPase involved i 37.8 1.2E+03 0.027 31.8 68.4 668 730-1507 131-809 (908)
178 COG1340 Uncharacterized archae 36.3 6.9E+02 0.015 28.4 27.5 53 624-687 28-80 (294)
179 PF09069 EF-hand_3: EF-hand; 36.0 1.4E+02 0.0031 27.1 6.7 68 1494-1567 3-77 (90)
180 PF07499 RuvA_C: RuvA, C-termi 35.9 69 0.0015 25.0 4.2 41 1513-1564 3-43 (47)
181 KOG0041|consensus 35.6 37 0.00081 35.1 3.3 30 1537-1566 99-128 (244)
182 KOG2199|consensus 35.6 10 0.00022 43.2 -0.6 52 148-199 216-267 (462)
183 PF12718 Tropomyosin_1: Tropom 35.5 4.8E+02 0.01 26.3 13.1 96 721-819 35-131 (143)
184 KOG4666|consensus 35.2 67 0.0015 35.9 5.3 64 1494-1564 259-323 (412)
185 KOG0751|consensus 34.9 90 0.002 37.0 6.5 55 1502-1565 82-136 (694)
186 KOG1937|consensus 34.2 8.8E+02 0.019 29.0 26.8 31 543-573 305-335 (521)
187 KOG2871|consensus 33.3 30 0.00066 39.2 2.5 64 1493-1563 308-372 (449)
188 KOG1510|consensus 32.5 4.1E+02 0.0089 26.0 9.2 64 470-533 54-120 (139)
189 COG4477 EzrA Negative regulato 30.9 1.1E+03 0.024 29.1 54.0 33 1012-1044 510-543 (570)
190 PHA02562 46 endonuclease subun 30.4 1.2E+03 0.027 29.6 31.1 289 679-997 150-440 (562)
191 PF10498 IFT57: Intra-flagella 29.2 1E+03 0.022 28.2 16.5 53 469-521 298-352 (359)
192 KOG0751|consensus 29.0 68 0.0015 37.9 4.4 62 1494-1562 179-241 (694)
193 TIGR03545 conserved hypothetic 28.5 1.3E+03 0.028 29.2 17.1 78 769-858 164-241 (555)
194 PF04849 HAP1_N: HAP1 N-termin 28.2 9.6E+02 0.021 27.5 24.4 58 851-912 77-134 (306)
195 PF15070 GOLGA2L5: Putative go 27.5 1.4E+03 0.031 29.3 40.3 82 492-575 148-232 (617)
196 PF11802 CENP-K: Centromere-as 27.4 9.1E+02 0.02 27.0 17.3 107 925-1038 42-150 (268)
197 COG5570 Uncharacterized small 26.8 2E+02 0.0043 22.7 4.9 49 59-121 5-53 (57)
198 KOG3449|consensus 26.7 1.9E+02 0.0041 27.0 5.8 55 1497-1563 4-58 (112)
199 PF04849 HAP1_N: HAP1 N-termin 26.5 1E+03 0.022 27.3 25.4 27 979-1005 274-300 (306)
200 PF14513 DAG_kinase_N: Diacylg 26.5 45 0.00097 33.1 2.1 51 1509-1568 6-63 (138)
201 PF00018 SH3_1: SH3 domain; I 25.4 4.1 8.8E-05 32.0 -4.3 44 152-195 2-47 (48)
202 PF04129 Vps52: Vps52 / Sac2 f 25.0 1.5E+03 0.031 28.6 17.1 174 576-751 8-194 (508)
203 COG1340 Uncharacterized archae 25.0 1.1E+03 0.023 27.0 26.5 91 839-946 30-121 (294)
204 PF15070 GOLGA2L5: Putative go 24.7 1.6E+03 0.034 28.9 41.5 66 937-1002 155-223 (617)
205 TIGR03185 DNA_S_dndD DNA sulfu 24.6 1.7E+03 0.036 29.1 34.8 59 1011-1072 394-452 (650)
206 PF08397 IMD: IRSp53/MIM homol 24.0 9.6E+02 0.021 26.1 16.0 34 1196-1229 5-38 (219)
207 PF01576 Myosin_tail_1: Myosin 23.8 26 0.00057 46.8 0.0 723 366-1109 4-743 (859)
208 PF08976 DUF1880: Domain of un 23.5 56 0.0012 30.8 2.0 30 1535-1564 5-34 (118)
209 TIGR02168 SMC_prok_B chromosom 23.2 2.3E+03 0.049 30.2 83.2 761 658-1512 175-1061(1179)
210 KOG3958|consensus 23.2 1.1E+03 0.024 26.5 20.0 161 367-530 192-369 (371)
211 TIGR01005 eps_transp_fam exopo 21.6 2E+03 0.043 29.0 19.0 11 771-781 290-300 (754)
212 cd07623 BAR_SNX1_2 The Bin/Amp 20.9 1.1E+03 0.024 25.7 21.3 136 409-562 40-180 (224)
213 PF08317 Spc7: Spc7 kinetochor 20.9 1.4E+03 0.03 26.8 25.0 201 838-1055 77-290 (325)
214 COG1579 Zn-ribbon protein, pos 20.7 1.2E+03 0.025 25.9 23.0 87 767-856 29-116 (239)
215 KOG0612|consensus 20.4 2.4E+03 0.051 29.4 35.0 54 1016-1070 718-771 (1317)
No 1
>KOG0040|consensus
Probab=100.00 E-value=2.8e-142 Score=1259.26 Aligned_cols=1494 Identities=59% Similarity=0.902 Sum_probs=1427.9
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccCChHhHHHHHHHHHHHHHHHHhhHHH
Q psy6935 2 EQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDR 81 (1575)
Q Consensus 2 ~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~e~~~~l~s~~~g~dl~~v~~~l~kh~~le~ei~~~~~~ 81 (1575)
++|..+|+.|-+....|+.+|-++++..+.|++.++...|+.|+++...|+..|+|+-++..++.+|..+-++|.+|.++
T Consensus 760 e~L~~r~eal~dp~a~rk~Kl~d~l~~~~l~rd~edE~awi~E~E~~a~st~~gkdlI~~qnl~~k~q~~~~~ia~he~r 839 (2399)
T KOG0040|consen 760 ENLVARYEALKEPLATRKQKLLDSLQLQQLFRDTEDEEAWIREKEPIAASTNRGKDLIGVQNLLKKHQALLAEIANHEPR 839 (2399)
T ss_pred HHHHHHHhhhhchhHHHHHHHHHHhhhhhhhhchHHHHHHHhhcchhccchhcchhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----------------------------------------------------------------HhhC
Q psy6935 82 IESVKAATEQFL----------------------------------------------------------------EHYG 97 (1575)
Q Consensus 82 ~~~~~~~~~~l~----------------------------------------------------------------~~~g 97 (1575)
+.+|.+.|..|+ .+||
T Consensus 840 i~~i~~r~~~m~~~~~f~aedvk~~~~~L~~~~~slk~ka~~r~~dle~s~q~~qy~ad~~eae~w~~ekEpi~~stdyg 919 (2399)
T KOG0040|consen 840 IQEVTSRGNKMVEEGHFAAEDVRSRLKSLNQNWESLKAKASQRRQDLEDSLQAQQYLADANEAESWMREKEPIVGSTDYG 919 (2399)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHhhHHHHhhccCccccccccc
Confidence 999999999776 4699
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCccccchhHHHHHHhhhccccchhhhhcchhhHHHHHhh
Q psy6935 98 KDEDSSEALLKKHEALVSDLEAFGNTILGLREQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNS 177 (1575)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 177 (1575)
+|++++.+++++|.++..++.+|...|++|+.++..|+.|..|+... .+.+++++|+|...||+|+.++++++..++++
T Consensus 920 Kdedsa~allkkhea~~~dl~af~~~i~~lr~qa~~cq~Q~tpv~~~-g~~~v~alyd~q~kSprev~mKkgDvltll~s 998 (2399)
T KOG0040|consen 920 KDEDSAEALLKKHEALLSDLEAFGDSIQALREQANACRQQEAPVEDV-GKECVLALYDYQEKSPREVTMKKGDVLTLLNS 998 (2399)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCchhhH-HHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhh
Confidence 99999999999999999999999999999999999999888888887 88999999999999999999999999999999
Q ss_pred cCcchhHHhhccccccchhhHHHhhhhhhhhhhhhhhhHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy6935 178 NNKDWWKVEVNDRQGFVPAAYVKKMEAGLTASQQNLADVKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDIT 257 (1575)
Q Consensus 178 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~l~~~~~~r~~~L~~~~ 257 (1575)
.++.||+++++.+.+|+|..|++.+.+. ....+.+.+ ..+|..++.++..+|.++.....+|+++|.. .
T Consensus 999 ~nkdwwkve~~d~qg~vpa~yvk~~~~~-~~~~~~l~~---------~~~i~~rq~qi~~qyr~lld~~~er~~~l~k-~ 1067 (2399)
T KOG0040|consen 999 INKDWWKVEVNDRQGFVPAAYVKRLDPG-SASQPNLRR---------EESIAQRQEQIENQYRSLLDLAEERKRKLEE-R 1067 (2399)
T ss_pred cccccccchhhhhcCcchHHHHHHhccC-CcchHHHHH---------HHHHHhhHHHHHHHHHHHHhchHHHHHHHHH-H
Confidence 9999999999999999999999999988 444443333 2488899999999999999999999999999 9
Q ss_pred HhHHHHHhhhhhHHHHHHHHHhHHhhhHHHHHHhcCChhhhHHHH-HhHhhHHHHHhhH-----------HHHHhhcccc
Q psy6935 258 VKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQ-YFKRDADELESWI-----------YEKLQAASDE 325 (1575)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~Wl~~~~~~l~~~~~~~~~~l~~~~~l~-~~~~~~~el~~~~-----------~l~~~~~~~~ 325 (1575)
+..|.+.++ ..++..||.+++... . +.+++.|..++ +|.+|..++.+++ .|.+.|.+..
T Consensus 1068 ~ke~~l~~e---a~dl~~wi~ekE~~~----~--~vdle~V~~lqkKfddf~~dlkane~rLre~n~vAd~l~~~g~t~~ 1138 (2399)
T KOG0040|consen 1068 CKEFLLARE---ANDLAEWIQEKEAEN----T--EVDLEQVEVLQKKFDDFQKDLKANEVRLRDINKVADDLTSEGQTEE 1138 (2399)
T ss_pred HHHHHHHHH---hhhhHHHHHHHHHHh----c--cccHHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhccccccCHH
Confidence 999988777 889999998877221 1 55899999999 9999999999872 2222333334
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhhHhHHHHhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHH
Q psy6935 326 SYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFD 405 (1575)
Q Consensus 326 ~~~i~~~L~~~w~~L~~~~~~r~~~L~~~l~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~ 405 (1575)
+..|++.++.+|..|.....+|.+.|..+ ..++.|+.+.+....|+.++-..|...++|.++.+++...++|.+|.
T Consensus 1139 ~~~irqqln~rw~~Lqr~~~E~~q~lgsa----hevq~fhrd~detk~~i~ek~~al~~~d~g~dl~svQalqrkheg~e 1214 (2399)
T KOG0040|consen 1139 AAQIRQQLNARWRSLQRLAEERRQLLGSA----HEVQRFHRDADETKEWIEEKCQALNADDPGSDLRSVQALQRKHEGFE 1214 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHhhHHHHHHHHHHHHhhccccccchHHHHHHHHHHhccch
Confidence 45688899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Q psy6935 406 KAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKL 485 (1575)
Q Consensus 406 ~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~~~~ 485 (1575)
+++.+...+|..|...+..|.+++|..+..++.+..+++..|..|......|..+|..+..++.|..+..++..|+..+.
T Consensus 1215 rdla~L~Dkvt~l~e~a~rLtqshp~~aeq~q~qk~elne~w~dl~s~~~~Rkekl~ds~d~~rfLs~~rdl~~wi~sm~ 1294 (2399)
T KOG0040|consen 1215 RDLAALGDKVTSLGETAERLSQSHPDAAEDLQRKQMELNEAWEDLQGRAKDRKEKLLDSYDLQRFLSDYRDLMNWINSIG 1294 (2399)
T ss_pred hchHHHhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc-cccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 486 QLAT-EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEK 564 (1575)
Q Consensus 486 ~~l~-~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r 564 (1575)
.... .+.+.|+..+...+..|+....++..+.+.+..+...|..++.+++.++|+ |..++.. +.....
T Consensus 1295 ~lvss~ela~d~tg~eAllerhqe~rte~daRa~tfqA~eqf~~~ll~~~h~As~e--ie~kl~~-------~~l~r~-- 1363 (2399)
T KOG0040|consen 1295 GLVSSQELANDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGNELLDSGHYASPE--IEKKLQA-------VKLERD-- 1363 (2399)
T ss_pred chhhhHHHhhhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccCcCCHH--HHHHHHH-------HHhhcc--
Confidence 8888 888999999999999999999999999999999999999999999999998 8888876 333333
Q ss_pred HHHHHHHHHHH-HHHHHhhccchhchhhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6935 565 SLKLKEANKQR-TYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQ 643 (1575)
Q Consensus 565 ~~~L~~~~~~r-~~L~q~~~~~~f~~~~~~~l~~wL~~~E~~L~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~~~~l~ 643 (1575)
.++.+|..| ..+++|++++.|. +++.+...|+..-|.++ ..+.+ +.+.+.+++++|.+|...+..+..++..+.
T Consensus 1364 --~le~awv~rr~~ldq~lelqLf~-~dceq~e~~maare~~l-~dD~~-s~D~veAl~kk~edfdkAi~~qeqkit~l~ 1438 (2399)
T KOG0040|consen 1364 --DLEKAWVKRRKILDQCLELQLFQ-RDCEQAESWMSAREAFL-ADDKS-SLDSVEALIKKHEDFDKAINAQEEKIAALQ 1438 (2399)
T ss_pred --chHHHHHHHHHHHHhhhhHHHHH-hhhHHHHHHHHHHHHhh-ccccc-ccchHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 889999999 9999999999999 99999999999999999 66666 899999999999999999999999999999
Q ss_pred HhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHhhHHHHHHHHHHHHhhhhccCCCChhhH
Q psy6935 644 TLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANI 723 (1575)
Q Consensus 644 ~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~l~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~l 723 (1575)
..+..|+..+||+.+.|..+...+..||..+...+.+.+..|-.+..+++|..++.++..|+.|+.+.+.+++|.||+++
T Consensus 1439 ~~a~~lia~~hya~e~i~~~R~~vlDrwr~lk~~Li~krtklg~~qTlqqf~rd~deiE~wi~Ek~~~a~eesykD~tni 1518 (2399)
T KOG0040|consen 1439 HFAESLIADNHYAKEEIATRRQQVLDRWRALKAQLIEKRSKLGDSQTLQQFSRDADEIENWISEKLQTACDESYKDPTNI 1518 (2399)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 724 QSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIA 803 (1575)
Q Consensus 724 ~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~ 803 (1575)
+..-++|++|.++|.++...+..++..|..+++. .|.+....+..++..+...|+-+.....++..+|.++.....|..
T Consensus 1519 q~k~qk~qaf~~el~~~sd~i~~vi~~gN~lie~-~c~g~e~a~~~~l~~l~d~w~~l~~~t~ek~~klKea~kq~~f~t 1597 (2399)
T KOG0040|consen 1519 QSKHQKHQAFEAELHANSDRIHGVINMGNSLIER-SCDGNEDAVKARLEQLADQWDHLVEKTTEKSKKLKEANKQQRFNT 1597 (2399)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccccchh-hhcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 677888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHH
Q psy6935 804 AVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINER 883 (1575)
Q Consensus 804 ~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r 883 (1575)
.+.++.-|+.+++..|.+.++|.|+.++..+|++|+.++.++.++.+.+..++..+..++.++.++...|.++...++.|
T Consensus 1598 ~Ikd~~fwl~eve~ll~~ed~~kdLasv~nlLkkhqlle~di~a~ed~~kd~n~qadSll~s~~f~~~~i~dkr~~i~~r 1677 (2399)
T KOG0040|consen 1598 AIKDLEFWLSEVETLLASEDYGKDLASVGNLLKKHQLLEADIVAHEDRLKDLNTQADSLLESGQFDTDQIVEKRDNINKR 1677 (2399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy6935 884 YERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQE 963 (1575)
Q Consensus 884 ~~~L~~~~~~R~~~Le~~~~~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~ 963 (1575)
|.++...+..|+..|.+++.+++|++++.+...||.++...+++.+||.++..|+.+.++|+.+..++.+|+|.++.|..
T Consensus 1678 ~~~V~~laa~~r~kl~ea~~L~qff~d~~Deeswikek~l~V~sedygrdl~gVqnl~kkhkrle~el~~hepaiQ~v~~ 1757 (2399)
T KOG0040|consen 1678 FLNVKELAAARRAKLNEALALHQFFRDIDDEESWIKEKKLLVSSDDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQNVLD 1757 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccchhhcccchhhHHHHHHhchhhhhhhhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHH
Q psy6935 964 TGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAV 1043 (1575)
Q Consensus 964 ~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~ 1043 (1575)
.|+.|...+..+..+|+.++..+...|..|......|...|...+.++.|....++.+.|++++...+...++|..+..+
T Consensus 1758 ~~ekl~d~a~vg~~ei~~rl~~~~~~w~~lk~la~~r~~~l~es~~~Q~f~~~~eeeEaWinek~~l~~~~d~gd~laai 1837 (2399)
T KOG0040|consen 1758 MGEKLKDKAAVGVEEIQQRLAQFVEHWEELKELAAARGQKLEESLEYQQFLANVEEEEAWINEKQQLLVSEDYGDTLAAV 1837 (2399)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 99999866666788899999999999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1044 QGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKA 1123 (1575)
Q Consensus 1044 ~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~~~~f~~~~ 1123 (1575)
+.++.+|.+|.-+...++.+|..+...|..++.......+.|..++..++.+-..+..++..|..++.....+.+|.-.+
T Consensus 1838 q~Ll~kh~a~e~d~~~hK~rV~~~~~~g~dll~~~~h~~~~I~sk~~~l~~k~~~l~~~~~~~k~kl~dn~a~~qf~wk~ 1917 (2399)
T KOG0040|consen 1838 QGLLKKHEAFETDFTVHKDRVQDVCAQGEDLINKVNHHEEQISSKCEQLNEKLPSLEKAAAARKAQLEDNSAFLQFNWKA 1917 (2399)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHhchHHHHHHhhhhhhHHHHHHHHHhhcchhHHHHHHhHHHhhhhhHHHHHhhhhh
Confidence 99999999999999999999999999999999986666677999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy6935 1124 DVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARW 1203 (1575)
Q Consensus 1124 ~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w 1203 (1575)
+-+..|+..++..+.+.++|.++.+++.++.+..+|-..+..+.++.+..+..+-+.|+..-|..++.|..+-..+..+|
T Consensus 1918 dVveswi~~ke~~~k~e~~G~dl~~~q~ll~kQ~T~dasl~aF~QE~~~~itelkdql~~a~hnQSdAi~kr~l~l~~rw 1997 (2399)
T KOG0040|consen 1918 DVVESWIADKENSLKTDDFGRDLSSVQTLLTKQETFDAGLQAFQQEGIPNITALKDQLISAQHNQSKAIEKRHAALIKRW 1997 (2399)
T ss_pred hhhHHhhhhHHHHHHhhhhhhhHHhhhhHhhHHHHHHhhhhhhHHHhHhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcCchhhHhHHHHh
Q psy6935 1204 QKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWFEN 1283 (1575)
Q Consensus 1204 ~~L~~~~~~r~~~L~~a~~~~~~~~~l~~~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~~~~~l~~WL~~ 1283 (1575)
..+......|++.|-++...++.+.++...|+.+++ .|+.|...
T Consensus 1998 ~~l~~~s~~~~kkLLe~Q~~fkk~ee~~l~faKkaS------------------------------------afNwwfen 2041 (2399)
T KOG0040|consen 1998 QQLLAASAARRQKLLEMQSQFRKIEDLFLTFAKKAS------------------------------------AFNSWFEN 2041 (2399)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------hhhHHHHh
Confidence 999999999999999999999999999999999999 99999999
Q ss_pred hhhccCCccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccHHHHHHHHHHHHHHHHHH
Q psy6935 1284 AEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKER 1363 (1575)
Q Consensus 1284 ~e~~L~~~~~~~~~~~v~~ll~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~~~~r 1363 (1575)
+|..+..|..+.+.+++..+-..|..|...++..+..+..+..+...+.+.+.+++||++..+..|.++|.+|...+.+|
T Consensus 2042 aEE~l~~~~~~ns~~Ei~~l~~~h~~f~~sls~a~~df~~l~~ld~~iks~~v~~~pytw~t~e~Le~tw~~L~~iI~eR 2121 (2399)
T KOG0040|consen 2042 AEEDLTDPVRCNSLEEIRALRDAHEDFQASLSSAQADFKQLAELDQQIKSFNVGSNPYTWFTMEALEETWRNLQQIISER 2121 (2399)
T ss_pred hHhcccccccccchHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHhcCCCCCCceeehHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhcC-CCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy6935 1364 DIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEG-TGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEE 1442 (1575)
Q Consensus 1364 ~~~Le~a~~~~~~~~~~~~~f~~~~~~l~~Wl~~~~~~~~~~-~~~l~~ql~~lk~l~~ei~~~~~~l~~l~~l~~~l~~ 1442 (1575)
.+.|..+..+|.+|+.+|++|+..++.|..||.+++..+..+ +++|++|++.++.+..+|..++..+..|+.+|..+++
T Consensus 2122 ~~el~~E~~Rq~~N~klc~efa~~a~tfh~wi~etr~el~~~~sgtLE~Qleal~~k~~evqa~rg~l~~ie~~g~lmE~ 2201 (2399)
T KOG0040|consen 2122 ERELDKEISRQEENDKLCEEFACTANTFHQWIVETRKELEDGESGTLEDQLEALKRKIKEVQAMRGQLQKIEKLGALMES 2201 (2399)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998887 9999999999999999999999999999999999999
Q ss_pred hhhhcccCCcchhhhhhhhHHHHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHH
Q psy6935 1443 HLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA 1522 (1575)
Q Consensus 1443 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 1522 (1575)
++|++|+|+.+|+.+|-+.|+.+..++.+|..+++.+|..++.+|+|++++.+|.-+|++||++.+|++++.+|+.||++
T Consensus 2202 ~lIldnkyt~~st~GlaqqwdQl~qL~~rMqhnlEQqIqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrs 2281 (2399)
T KOG0040|consen 2202 RLILDNKYTEHSTVGLAQQWDQLDQLMMRMQHNLEQQIQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRS 2281 (2399)
T ss_pred hHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhhhhhcCC
Q psy6935 1523 LGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKETRQNSS 1573 (1575)
Q Consensus 1523 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 1573 (1575)
+||++|++++|.|++++++++..+||+.+|+|+..+|+.||+++.++||.+
T Consensus 2282 lgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s 2332 (2399)
T KOG0040|consen 2282 LGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILS 2332 (2399)
T ss_pred cCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999998865
No 2
>KOG0517|consensus
Probab=100.00 E-value=3.4e-139 Score=1260.83 Aligned_cols=1282 Identities=27% Similarity=0.441 Sum_probs=1205.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccCChHhHHHHHHHHHHHHHHHHhhHHH
Q psy6935 2 EQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDR 81 (1575)
Q Consensus 2 ~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~e~~~~l~s~~~g~dl~~v~~~l~kh~~le~ei~~~~~~ 81 (1575)
+.|..+|++|++++++||.+||+++.+|+|+++|++.++||+|+++.+++.++|+||++|..+|+|||+||.||.+|.+.
T Consensus 606 ~~le~~y~eL~~laa~RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~ 685 (2473)
T KOG0517|consen 606 AHLEQCYQELVELAAARRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALEDEMRGRDAH 685 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhcchhH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH----------------------------------------------------------------HhhC
Q psy6935 82 IESVKAATEQFL----------------------------------------------------------------EHYG 97 (1575)
Q Consensus 82 ~~~~~~~~~~l~----------------------------------------------------------------~~~g 97 (1575)
+..++..|..|+ .+||
T Consensus 686 ~~~~~~~G~~Lvae~~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~QffaDAdd~~sWl~d~~rlvss~d~G 765 (2473)
T KOG0517|consen 686 LKQMIREGEELVAEGHPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQFFADADDAESWLRDALRLVSSEDVG 765 (2473)
T ss_pred HHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccchhcC
Confidence 999999999887 6899
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCccccchhHHHHHHhhhccccchhhhhcchhhHHHHHhh
Q psy6935 98 KDEDSSEALLKKHEALVSDLEAFGNTILGLREQAQSCRQQETPVIDVTGKECVIALYDYTEKSPREVSMKKSDVLTLLNS 177 (1575)
Q Consensus 98 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 177 (1575)
.|+.++++|+++|.+|.++|.+|+..|.+|.+++.++++..++.
T Consensus 766 ~DE~saq~LlkrH~~l~~El~a~~~~i~~L~eQa~~l~~~~~e~------------------------------------ 809 (2473)
T KOG0517|consen 766 HDEASAQALLKRHRDLEEELRAYRGDIDRLEEQASALPQESPEG------------------------------------ 809 (2473)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccCCC------------------------------------
Confidence 99999999999999999999999999999999999876421100
Q ss_pred cCcchhHHhhccccccchhhHHHhhhhhhhhhhhhhhhHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy6935 178 NNKDWWKVEVNDRQGFVPAAYVKKMEAGLTASQQNLADVKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDIT 257 (1575)
Q Consensus 178 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~l~~~~~~r~~~L~~~~ 257 (1575)
|.......++..|+..|..|.+.+.-|++.|.+ +
T Consensus 810 ---------------------------------------------p~V~~~~~R~~~i~q~Y~El~~lA~lRrq~L~d-a 843 (2473)
T KOG0517|consen 810 ---------------------------------------------PEVRQPLQRQDTISQDYEELQELAQLRRQRLED-A 843 (2473)
T ss_pred ---------------------------------------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 000111347888999999999999999999999 9
Q ss_pred HhHHHHHhhhhhHHHHHHHHHhHHhhhHHHHHHhcCChhhhHHHH-HhHhhHHHHHhh-----------HHHHHhhcccc
Q psy6935 258 VKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQ-YFKRDADELESW-----------IYEKLQAASDE 325 (1575)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~Wl~~~~~~l~~~~~~~~~~l~~~~~l~-~~~~~~~el~~~-----------~~l~~~~~~~~ 325 (1575)
+..|.||.+ |++++.||.+++.-|....+ ++++++|+..+ +|+.|..++.+. .++...|.| .
T Consensus 844 laLy~~~se---~d~~ElWi~Eke~~L~~m~~--~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp-~ 917 (2473)
T KOG0517|consen 844 LALYGFYSE---CDACELWIKEKEKWLATMSP--PDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHP-N 917 (2473)
T ss_pred HHHHHHHhh---ccHHHHHHHHHHHHHhccCC--CCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCC-C
Confidence 999999887 99999999888877765433 78999999999 999999999987 345555655 5
Q ss_pred chHhHH---HHHHHHHHHHHHHHHHHHHhHhhHhhhhhHhHHHHhHHHHHHHHHHHHHhhcc-ccCCCCHHHHHHHHHHH
Q psy6935 326 SYKETT---NLQAKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYRDCEQAENWMSAREAFLNA-EEVDSKTDNVEALIKKH 401 (1575)
Q Consensus 326 ~~~i~~---~L~~~w~~L~~~~~~r~~~L~~~l~~~~~~~~f~~~~~~l~~WL~~~e~~l~~-~~~~~~~~~~~~~l~~~ 401 (1575)
+.+|.. .|+.+|..|..+..+|...|..+ ..++.|...|+....||.++-..+.. ..+|.|+..|....+++
T Consensus 918 sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a----~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL 993 (2473)
T KOG0517|consen 918 SDEILARQDKLNQRWQQLRELVDQKKVALESA----LRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRL 993 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHH
Confidence 666643 99999999999999999999999 89999999999999999999888885 56789999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q psy6935 402 EDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWI 481 (1575)
Q Consensus 402 ~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl 481 (1575)
..+++++.+.+++|..|...|..+...+|..+..|..++..|..-|..|...+.+|...+..+..++.|.++++.|..||
T Consensus 994 ~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl 1073 (2473)
T KOG0517|consen 994 QGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWL 1073 (2473)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-cccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHH
Q psy6935 482 AEKLQLAT-EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQK 560 (1575)
Q Consensus 482 ~~~~~~l~-~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~ 560 (1575)
..+...+. .+.|.|+++++.+|.+|.++..+|..++..|..+...|+.+... +..++...+.++|..+...|.
T Consensus 1074 ~~tq~~~~see~p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge~~~~g-~~~p~~~~l~erL~~L~~gw~----- 1147 (2473)
T KOG0517|consen 1074 ESTQTQVASEEGPVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGETVADG-QTDPQYLFLRERLQALGTGWE----- 1147 (2473)
T ss_pred HHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCchHhHHHHHHHHHHhHHH-----
Confidence 99999998 88899999999999999999999999999999999999987764 333344469999999988888
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhhccchhchhhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy6935 561 TTEKSLKLKEANKQR-TYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKI 639 (1575)
Q Consensus 561 ~~~r~~~L~~~~~~r-~~L~q~~~~~~f~~~~~~~l~~wL~~~E~~L~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~~ 639 (1575)
.|..+|+.| ..|.|++.++.|. +++++++..+.+.|.+|...++|.++++++.+|++|.+|...|.+..+++
T Consensus 1148 ------eL~~mWe~Rq~~L~Q~l~lQ~F~-Rda~q~ea~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki 1220 (2473)
T KOG0517|consen 1148 ------ELHRMWENRQKWLSQGLDLQLFL-RDARQAEATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKI 1220 (2473)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 666778888 8999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHhhHHHHHHHHHHHHhhhhccCCCC
Q psy6935 640 GALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKD 719 (1575)
Q Consensus 640 ~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~l~~f~~~~~el~~Wl~e~~~~~~~~~~~d 719 (1575)
..+...|+.|++.+|++++.|.+++..|..||..+...+.+|..+|.+++.+++|.++++++..||.+|+.++.+.+|.+
T Consensus 1221 ~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK~l~a~Desy~~ 1300 (2473)
T KOG0517|consen 1221 EALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRERAQQRLRKLKDSLELQEFLQDCDELKLWIEEKMLMAQDESYRD 1300 (2473)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 720 PANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQR 799 (1575)
Q Consensus 720 ~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~ 799 (1575)
+.+|..++.+|++|++||.++++.++.+.+.|..|+...|+ ..+.|..++..|+.+|+.|...+.+++.+|.+|....
T Consensus 1301 ~~nl~~k~~kHqAFeaELaank~~l~~i~~eG~~L~~ekpe--~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~ 1378 (2473)
T KOG0517|consen 1301 ARNLHSKWLKHQAFEAELAANKEWLEKIEKEGQELVSEKPE--LKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQE 1378 (2473)
T ss_pred hhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhcCCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999998864 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHH
Q psy6935 800 TYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQS 879 (1575)
Q Consensus 800 ~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~ 879 (1575)
.|...+.++..||.++|..|.+.++|.|+.+|+.++++|+.++.++..+...|..|...+..|...++ +++.|......
T Consensus 1379 ~~~qs~~D~~~~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~-~a~~I~~~~~~ 1457 (2473)
T KOG0517|consen 1379 LLLQSLADAKKKLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGH-SAENIEETTLA 1457 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCc-chhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHH
Q psy6935 880 INERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQ 959 (1575)
Q Consensus 880 l~~r~~~L~~~~~~R~~~Le~~~~~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~ 959 (1575)
+..||..|+.++..|+..|+.+..+|+|.+++++.+.||.++.|.+++.++|.++..++.+.+|++.|+.||..|+|.|+
T Consensus 1458 v~~Rf~~L~~Pl~~R~~~Le~S~e~hQf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~ 1537 (2473)
T KOG0517|consen 1458 VLERFEDLLGPLQERRKQLEASKELHQFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRIN 1537 (2473)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q psy6935 960 NVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDT 1039 (1575)
Q Consensus 960 ~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d 1039 (1575)
.|...|..|+..+||+++.|...+.+|...|..|...+..|...|..+...++|+.++.|+++||.+.+..+.+.++|.|
T Consensus 1538 ~vl~~gq~Li~~~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~kaQQY~fDaaE~EaWm~Eqel~m~see~gkD 1617 (2473)
T KOG0517|consen 1538 DVLERGQSLIDSGHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKAQQYYFDAAEAEAWMGEQELYMMSEEYGKD 1617 (2473)
T ss_pred HHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1040 MAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQF 1119 (1575)
Q Consensus 1040 ~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~~~~f 1119 (1575)
..++..++++|+.++.++..|...|..|...|..|+..++|+.+.|..+...|...|..|..++.+|+.+|++++.+++|
T Consensus 1618 E~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~eri~~rQ~qldkly~~Lk~LA~eRr~~Lee~l~L~el 1697 (2473)
T KOG0517|consen 1618 EDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPESERISRRQSQLDKLYAGLKDLAEERRRRLEETLRLYEL 1697 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy6935 1120 MWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDV 1199 (1575)
Q Consensus 1120 ~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l 1199 (1575)
.+++++|..||.+.+.++.|+++|.|++++..++.+|.+|..++...|+++|.+|+.+++.||..||+++++|..+.+.|
T Consensus 1698 ~RE~dDLeqWIae~e~vAgS~elGqD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~~LI~~ghs~a~tvaewkd~L 1777 (2473)
T KOG0517|consen 1698 SREVDDLEQWIAEKEVVAGSEELGQDFEHVTLLQEKFREFARDTEAIGSERVAACNLLADELIERGHSAAATVAEWKDGL 1777 (2473)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcCchhhHhH
Q psy6935 1200 IARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNS 1279 (1575)
Q Consensus 1200 ~~~w~~L~~~~~~r~~~L~~a~~~~~~~~~l~~~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~~~~~l~~ 1279 (1575)
+..|.+|++++.+|.+.|.++..-+ .|..++. .+..
T Consensus 1778 neaW~~LlELi~tR~q~Laas~elh--------rf~~D~~------------------------------------E~l~ 1813 (2473)
T KOG0517|consen 1778 NEAWADLLELIDTRGQKLAASRELH--------RFHRDAR------------------------------------EVLG 1813 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhHH------------------------------------HHHH
Confidence 9999999999999999998776543 4666666 8888
Q ss_pred HHHhhhhccCCccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCCCCCC-cccHHHHHHHHHHHHH
Q psy6935 1280 WFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYT-WFTMEALEDTWRNLQK 1358 (1575)
Q Consensus 1280 WL~~~e~~L~~~~~~~~~~~v~~ll~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~~~~~~l~~~w~~l~~ 1358 (1575)
|+...-..|... ++-++..+..+.+.|.+|+++|....+++..|...+.+|...++++++.. ..+.+.+...|..|+.
T Consensus 1814 riqeK~~~lp~~-lgRD~~s~~al~R~H~~fe~dl~~l~~Qvqql~e~a~rLq~~YaG~kA~aI~~reqeV~qaW~~L~~ 1892 (2473)
T KOG0517|consen 1814 RIQEKQAALPDD-LGRDLNSAEALQRKHEAFEHDLVALEPQVQQLQEDAARLQKAYAGDKAEAIQQREQEVLQAWAELQG 1892 (2473)
T ss_pred HHHHHHhhCchh-hCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 888887777543 36788899999999999999999999999999999999999888776654 4489999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6935 1359 IIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMME-----GTGSLEQQLEAIKRKAAEVRSRRSDLKKI 1433 (1575)
Q Consensus 1359 ~~~~r~~~Le~a~~~~~~~~~~~~~f~~~~~~l~~Wl~~~~~~~~~-----~~~~l~~ql~~lk~l~~ei~~~~~~l~~l 1433 (1575)
.++.|+..|..+.. ...|.+.+.+++.|+..+.+.|.. ..++.+=.+..|+.|..||+.+.++...+
T Consensus 1893 ~~~~Rr~~L~~t~D--------l~rF~~~VRDllsWmd~v~~qiqa~e~prDvss~ellm~~Hq~lkaEieARe~~f~~c 1964 (2473)
T KOG0517|consen 1893 ACEARRDRLADTSD--------LFRFFSMVRDLLSWMDEVIRQIQAQERPRDVSSVELLMNNHQGLKAEIEAREDNFSAC 1964 (2473)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHhHHHHHHHHhccHHHHHH
Confidence 99999999988763 348999999999999999887744 37777779999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy6935 1434 EDLGAILEEHL 1444 (1575)
Q Consensus 1434 ~~l~~~l~~~~ 1444 (1575)
..+|+.+..+.
T Consensus 1965 ~eLG~~lL~~~ 1975 (2473)
T KOG0517|consen 1965 IELGKSLLLRK 1975 (2473)
T ss_pred HHHHHHHHHhc
Confidence 99999988775
No 3
>KOG0517|consensus
Probab=100.00 E-value=6.4e-120 Score=1093.74 Aligned_cols=1358 Identities=25% Similarity=0.383 Sum_probs=1199.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccCChHhHHHHHHHHHHHHHHHHhhHHH
Q psy6935 2 EQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDR 81 (1575)
Q Consensus 2 ~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~e~~~~l~s~~~g~dl~~v~~~l~kh~~le~ei~~~~~~ 81 (1575)
..+...|+.|..++..|+.+|+++..+++||.|++++.+||.++-..++|.|+|+|-.+++.++++|+.|+.||.++.+.
T Consensus 712 ~~i~~~W~~L~~l~~~r~~rL~~A~~~~QffaDAdd~~sWl~d~~rlvss~d~G~DE~saq~LlkrH~~l~~El~a~~~~ 791 (2473)
T KOG0517|consen 712 AEIREQWQRLEALVAGRGRRLQEARELYQFFADADDAESWLRDALRLVSSEDVGHDEASAQALLKRHRDLEEELRAYRGD 791 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccchhcCCchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCccccchhHHHHHHhhhccccch
Q psy6935 82 IESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDLEAFGNTILGLREQAQSCRQQETPVIDVTGKECVIALYDYTEKSP 161 (1575)
Q Consensus 82 ~~~~~~~~~~l~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (1575)
+..+.+.|..+....+ +.+.+...+++ +..+.+.|..|.++|+.++. ..+.++++|.||++ |
T Consensus 792 i~~L~eQa~~l~~~~~-e~p~V~~~~~R-------~~~i~q~Y~El~~lA~lRrq---------~L~dalaLy~~~se-~ 853 (2473)
T KOG0517|consen 792 IDRLEEQASALPQESP-EGPEVRQPLQR-------QDTISQDYEELQELAQLRRQ---------RLEDALALYGFYSE-C 853 (2473)
T ss_pred HHHHHHHHHhhccccC-CCcccccHHHH-------HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhh-c
Confidence 9999999999975533 33334443333 67888999999999988774 23579999999994 5
Q ss_pred hhhhcchhhHHHHHhhcC--cchhHHhh--ccccccchhhHHHhhh-hhhhhhhhhhhhHHHHHhhhccccHHHHHHHHH
Q psy6935 162 REVSMKKSDVLTLLNSNN--KDWWKVEV--NDRQGFVPAAYVKKME-AGLTASQQNLADVKEVKILETANDIQERREQVL 236 (1575)
Q Consensus 162 ~e~~~~~~~~~~~l~~~~--~~~~~~e~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 236 (1575)
+++..|+.+.+..|.... +....|++ ++++.|.+........ ..+..+...+.. ..||.+..|..++.+|+
T Consensus 854 d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~----~ghp~sd~I~~~Q~~Ln 929 (2473)
T KOG0517|consen 854 DACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLE----VGHPNSDEILARQDKLN 929 (2473)
T ss_pred cHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH----cCCCChHHHHHHHHHHH
Confidence 778899999999998754 44667777 4577777754332211 111111111111 13678899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhHHHHHhhhhhHHHHHHHHHhHHhhhHHHHHH--------------------------
Q psy6935 237 NRYADFKSEARSKREKLEDITVKEVKILETANDIQERREQVLNRYADFKSEARS-------------------------- 290 (1575)
Q Consensus 237 ~~~~~l~~~~~~r~~~L~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~l~~~~~~-------------------------- 290 (1575)
.+|.+|..++..|...|.. +..-..|..+ |++...||.++..-+... ..
T Consensus 930 ~rW~~l~~l~~qk~~~L~~-a~~V~~f~~e---C~et~~wi~dK~~~~e~t-~~~~~Dl~gv~alqrrL~~lErdl~aie 1004 (2473)
T KOG0517|consen 930 QRWQQLRELVDQKKVALES-ALRVETFHLE---CEETRVWIRDKTRVLEST-DRLGNDLAGVMALQRRLQGLERDLAAIE 1004 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhh---hHHHHHHHHHHHHHHHhc-cccCcchHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999999999999 7665666555 999999987773111100 00
Q ss_pred --------------------------------------------------------------------------------
Q psy6935 291 -------------------------------------------------------------------------------- 290 (1575)
Q Consensus 291 -------------------------------------------------------------------------------- 290 (1575)
T Consensus 1005 ~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~~~see 1084 (2473)
T KOG0517|consen 1005 AKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQVASEE 1084 (2473)
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence
Q ss_pred hcCChhhhHHHH-HhHhhHHHHHhh----HHHHHhhccc-------cchHhHH---HHHHHHHHHHHHHHHHHHHhHhhH
Q psy6935 291 KREKLEDSRRFQ-YFKRDADELESW----IYEKLQAASD-------ESYKETT---NLQAKIQKHQAFEAEVAAHSNAIV 355 (1575)
Q Consensus 291 ~~~~l~~~~~l~-~~~~~~~el~~~----~~l~~~~~~~-------~~~~i~~---~L~~~w~~L~~~~~~r~~~L~~~l 355 (1575)
.+.+++.++.|. +|..+..||..| ..+...|.+. ..-.+++ .|...|+.|..+|..|+..|.++
T Consensus 1085 ~p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~eL~~mWe~Rq~~L~Q~- 1163 (2473)
T KOG0517|consen 1085 GPVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEELHRMWENRQKWLSQG- 1163 (2473)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-
Confidence 145555666666 666666666666 2233333211 1112333 88999999999999999999999
Q ss_pred hhhhhHhHHHHhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCch
Q psy6935 356 VLDNTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKP 435 (1575)
Q Consensus 356 ~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~ 435 (1575)
..++.|.++...+..-+...|.+|...++|.+++.+++.+++|.+|...|.+..++|..+...|++|+..+|+++..
T Consensus 1164 ---l~lQ~F~Rda~q~ea~l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~ 1240 (2473)
T KOG0517|consen 1164 ---LDLQLFLRDARQAEATLSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDK 1240 (2473)
T ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHh
Q psy6935 436 IDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAA 515 (1575)
Q Consensus 436 i~~~l~~L~~rw~~l~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~~~~~~l~~~~~~d~~~~~~~l~~~~~l~~el~~ 515 (1575)
|..+...|..||..+...+.+|..+|.++..++.|.++|+++..||.++.-+..++++.++.++...+.+|++|+.||.+
T Consensus 1241 I~ek~~~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK~l~a~Desy~~~~nl~~k~~kHqAFeaELaa 1320 (2473)
T KOG0517|consen 1241 IREKAQSILARRKANRERAQQRLRKLKDSLELQEFLQDCDELKLWIEEKMLMAQDESYRDARNLHSKWLKHQAFEAELAA 1320 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999995555588999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhchhhHHHH
Q psy6935 516 NADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQA 595 (1575)
Q Consensus 516 ~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~r~~L~q~~~~~~f~~~~~~~l 595 (1575)
+++.++.+.+.|+.|+...|...+. |..++..|+.+|+.|...+.+|..+|.+|-. ...|. +.+.++
T Consensus 1321 nk~~l~~i~~eG~~L~~ekpe~~~~--V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~----------q~~~~-qs~~D~ 1387 (2473)
T KOG0517|consen 1321 NKEWLEKIEKEGQELVSEKPELKAL--VEKKLRELHKQWDELEKTTQEKGRKLFQANR----------QELLL-QSLADA 1387 (2473)
T ss_pred ChHHHHHHHHHHHHHHhcCCccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHH-HHHHHH
Confidence 9999999999999999999988888 9999999999999999999999999888754 45667 899999
Q ss_pred HHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHH
Q psy6935 596 ENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLK 675 (1575)
Q Consensus 596 ~~wL~~~E~~L~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~ 675 (1575)
..||..+|..|.+.+.|.++.+|..++++++.++.+|..+..+|..|...+..|...+| +++.|......+..||..|.
T Consensus 1388 ~~~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~-~a~~I~~~~~~v~~Rf~~L~ 1466 (2473)
T KOG0517|consen 1388 KKKLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGH-SAENIEETTLAVLERFEDLL 1466 (2473)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCc-chhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988777 89999999999999999999
Q ss_pred HHHHHHHHHhHhhHHHHHHHhhHHHHHHHHHHHHhhhhccCCC-ChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy6935 676 EALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYK-DPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNL 754 (1575)
Q Consensus 676 ~~~~~r~~~Le~~~~l~~f~~~~~el~~Wl~e~~~~~~~~~~~-d~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L 754 (1575)
.++.+|+..|+.++.+++|..++++...|+.|+.+.++++.++ ++..++...+|++.++.||.+|+|.++.|...|+.|
T Consensus 1467 ~Pl~~R~~~Le~S~e~hQf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H~prI~~vl~~gq~L 1546 (2473)
T KOG0517|consen 1467 GPLQERRKQLEASKELHQFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQTLQAEIKGHQPRINDVLERGQSL 1546 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhHHHHHHHHhcchHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999977765 788999999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q psy6935 755 IDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNL 834 (1575)
Q Consensus 755 ~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~ 834 (1575)
+..+|+ +++.|...+.+|...|..|...+..|.+.|..+.+.++|+-.+.+++.||.+.+..+.+.++|.|..++..+
T Consensus 1547 i~~~h~--~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~kaQQY~fDaaE~EaWm~Eqel~m~see~gkDE~sa~~l 1624 (2473)
T KOG0517|consen 1547 IDSGHP--EAEAIEEKLQELESAWQELKEACELRRQRLDEAVKAQQYYFDAAEAEAWMGEQELYMMSEEYGKDEDSALKL 1624 (2473)
T ss_pred HhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHhhhhccccHHHHHHH
Confidence 998874 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 835 IKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADE 914 (1575)
Q Consensus 835 l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~~~~f~~~~~~~ 914 (1575)
+++|+.++.++..|...|..|...|+.|+..++|+++.|..+...|...|..|++++.+|+..|++++.+++|.++++++
T Consensus 1625 lkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~eri~~rQ~qldkly~~Lk~LA~eRr~~Lee~l~L~el~RE~dDL 1704 (2473)
T KOG0517|consen 1625 LKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPESERISRRQSQLDKLYAGLKDLAEERRRRLEETLRLYELSREVDDL 1704 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHH
Q psy6935 915 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELA-SHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSEL 993 (1575)
Q Consensus 915 ~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~-~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L 993 (1575)
..||.+++..+.|+++|.|++++..+..||.+|..++. -...+|.+++..+..||..||+.++.|..+-+.|+..|.+|
T Consensus 1705 eqWIae~e~vAgS~elGqD~EHv~~Lq~KF~eFa~~te~iG~eRv~~~n~la~~LI~~ghs~a~tvaewkd~LneaW~~L 1784 (2473)
T KOG0517|consen 1705 EQWIAEKEVVAGSEELGQDFEHVTLLQEKFREFARDTEAIGSERVAACNLLADELIERGHSAAATVAEWKDGLNEAWADL 1784 (2473)
T ss_pred HHHHHHHHHHhcChhhcCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 68889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhH
Q psy6935 994 KQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNK 1073 (1575)
Q Consensus 994 ~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~ 1073 (1575)
.+.+..|.+.|..+.+.++|+.++.++..||.++...| +.++|.|..++.++.++|.+|..+|....+.|..|.+.+..
T Consensus 1785 lELi~tR~q~Laas~elhrf~~D~~E~l~riqeK~~~l-p~~lgRD~~s~~al~R~H~~fe~dl~~l~~Qvqql~e~a~r 1863 (2473)
T KOG0517|consen 1785 LELIDTRGQKLAASRELHRFHRDAREVLGRIQEKQAAL-PDDLGRDLNSAEALQRKHEAFEHDLVALEPQVQQLQEDAAR 1863 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 58899999999999999999999999999999999999999
Q ss_pred hHhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCHHHHHHH
Q psy6935 1074 LIEAK-NHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTL 1152 (1575)
Q Consensus 1074 L~~~~-~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l 1152 (1575)
|.... ++.+..|..+.+.|...|..|...+..|+.+|..+..++.|+..+.++..|++.....+.+.+.+.|++.++-+
T Consensus 1864 Lq~~YaG~kA~aI~~reqeV~qaW~~L~~~~~~Rr~~L~~t~Dl~rF~~~VRDllsWmd~v~~qiqa~e~prDvss~ell 1943 (2473)
T KOG0517|consen 1864 LQKAYAGDKAEAIQQREQEVLQAWAELQGACEARRDRLADTSDLFRFFSMVRDLLSWMDEVIRQIQAQERPRDVSSVELL 1943 (2473)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchhHHHH
Confidence 99884 48899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1153 LTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYL 1232 (1575)
Q Consensus 1153 ~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~L~~a~~~~~~~~~l~~ 1232 (1575)
+..|+.+..+|.+.. +.+..|.++|+.|+..+|..+.+|+.++..|..+-+.|...|..|...|+..+.. +
T Consensus 1944 m~~Hq~lkaEieARe-~~f~~c~eLG~~lL~~~hyas~EI~ekl~~L~~~r~e~~~~W~~r~e~Lq~~lev-------~- 2014 (2473)
T KOG0517|consen 1944 MNNHQGLKAEIEARE-DNFSACIELGKSLLLRKHYASEEIKEKLRALQDRREELYEKWERRWEWLQQILEV-------H- 2014 (2473)
T ss_pred HHHhHHHHHHHHhcc-HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-
Confidence 999999999999986 8999999999999999999999999999999999999999999999999865433 2
Q ss_pred HHHHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcCchhhHhHHHHhhhhccCCccccCCHHHHHHHHHHHHHHHH
Q psy6935 1233 TFAKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQA 1312 (1575)
Q Consensus 1233 ~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~~~~~l~~WL~~~e~~L~~~~~~~~~~~v~~ll~~~~~~~~ 1312 (1575)
.|..++. .+..||...|++|.+..+|.|+++|+.+|++|++|++
T Consensus 2015 ~F~RdA~------------------------------------~aeawl~aQep~L~S~elG~sVdeVE~lIkrHEaFeK 2058 (2473)
T KOG0517|consen 2015 QFARDAK------------------------------------VAEAWLIAQEPYLRSSELGSSVDEVEKLIKRHEAFEK 2058 (2473)
T ss_pred HHHHHHH------------------------------------HHHHHHHhchhHhhHHhhCCCHHHHHHHHHHHHHHHH
Confidence 7999999 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHhhccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Q psy6935 1313 SLSSAQADFEALAALD-QQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAF 1391 (1575)
Q Consensus 1313 ~l~~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~~~~r~~~Le~a~~~~~~~~~~~~~f~~~~~~l 1391 (1575)
.++..+..+..+.+++ -++..... ....+-.+--.+...+..|.-.|..++. +-.|
T Consensus 2059 s~~a~eERfsaLerltt~el~e~r~--------~~~~~l~~~~r~k~~~~~r~~~l~~a~~---------------~asf 2115 (2473)
T KOG0517|consen 2059 SAAAQEERFSALERLTTLELIEARH--------RESTLLQRRMRVKELAESRGHALHDALL---------------MASF 2115 (2473)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHhhhhhhHHhhhhhHHHHHHH---------------hhhH
Confidence 9999999999998877 34443100 1113333356677777788887777661 2233
Q ss_pred HHHHHHHHHhh-hc----CCC---CHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhcccCCcchhhhhhhhHH
Q psy6935 1392 HQWLTETRTSM-ME----GTG---SLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWD 1463 (1575)
Q Consensus 1392 ~~Wl~~~~~~~-~~----~~~---~l~~ql~~lk~l~~ei~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~ 1463 (1575)
..|+++..... +. .+. +.-..+..+..+..++.+.++.++.|-.-|. .......++-.......+...|.
T Consensus 2116 ~~~~~e~~~~~~~~~~~~~~v~~~~~~~~~~~~qa~~aevqa~~~~~~~i~~rg~--~~~~~~~s~~~~~r~~~~~~~w~ 2193 (2473)
T KOG0517|consen 2116 TQWIEEKAKRQPPAPESSESVPLDEKAKTLQKHQAFEAEVQANAPVVQEIPRRGE--LAKSHDRSEEIARRLQGLRKHWE 2193 (2473)
T ss_pred HHHHhhhhcccCCCcccCCCCCcchhhHHHHhhcccccchhccchhhhhhhhhhh--HhhcCCccHHHHHHHHHHHHHHH
Confidence 48888764322 21 122 2334666778888899999999888888776 22223334444456778899999
Q ss_pred HHHHHHHhhccchH
Q psy6935 1464 QLDQLGMRMQHNLE 1477 (1575)
Q Consensus 1464 ~l~~~~~~~~~~~~ 1477 (1575)
.+...+......++
T Consensus 2194 ~l~~a~a~~~~~lE 2207 (2473)
T KOG0517|consen 2194 DLRAAMALRGQELE 2207 (2473)
T ss_pred HHHHHHHHhhhhHH
Confidence 99888866554443
No 4
>KOG0040|consensus
Probab=100.00 E-value=1.1e-93 Score=847.07 Aligned_cols=1234 Identities=30% Similarity=0.487 Sum_probs=1113.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccCChHhHHHHHHHHHHHHHHHHhhHHHH
Q psy6935 3 QIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRI 82 (1575)
Q Consensus 3 ~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~e~~~~l~s~~~g~dl~~v~~~l~kh~~le~ei~~~~~~~ 82 (1575)
.|..+|+.+.+.++.||.+|+++..++=|-+|.+++..||-|+-+.++...| +|+..++..++||.+||+|+.+|...+
T Consensus 21 ~vl~~y~~fk~~~~~~~~kleds~~~q~fkrdadel~~wi~ekl~~~~~~~y-~dptnlq~k~qkhqa~eaevqa~s~~i 99 (2399)
T KOG0040|consen 21 EVLTRYQSFKERSAERRQKLEDSYRFQYFKRDADELEKWIMEKLQIASDESY-RDPTNLQGKIQKHQAFEAEVQAHSRAI 99 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHhhhhccc-CCchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 5788999999999999999999999988999999999999999999976666 899999999999999999999998888
Q ss_pred HHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCccccchhHHHHHHhhhccccchh
Q psy6935 83 ESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDLEAFGNTILGLREQAQSCRQQETPVIDVTGKECVIALYDYTEKSPR 162 (1575)
Q Consensus 83 ~~~~~~~~~l~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1575)
..+-..|+.++.. |
T Consensus 100 ~~ld~t~~~~~~~-~----------------------------------------------------------------- 113 (2399)
T KOG0040|consen 100 VELDKTGNEMITM-G----------------------------------------------------------------- 113 (2399)
T ss_pred HHHHhHHHHHHhc-c-----------------------------------------------------------------
Confidence 8887777655311 0
Q ss_pred hhhcchhhHHHHHhhcCcchhHHhhccccccchhhHHHhhhhhhhhhhhhhhhHHHHHhhhccccHHHHHHHHHHHHHHH
Q psy6935 163 EVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYVKKMEAGLTASQQNLADVKEVKILETANDIQERREQVLNRYADF 242 (1575)
Q Consensus 163 e~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~l 242 (1575)
|+.+..|..++..|...|.-|
T Consensus 114 -----------------------------------------------------------h~a~e~~~~~l~el~~lw~~l 134 (2399)
T KOG0040|consen 114 -----------------------------------------------------------HFASEEIKARLEELHHLWDLL 134 (2399)
T ss_pred -----------------------------------------------------------cchhHHHHHHHHHHHHHHHHH
Confidence 122457788899999999999
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHhhhhhHHHHHHHHHhHHhhhHHHHHHhcCChhhhHHHH-HhHhhHHHHHhh-------
Q psy6935 243 KSEARSKREKLEDITVKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQ-YFKRDADELESW------- 314 (1575)
Q Consensus 243 ~~~~~~r~~~L~~~~~~~~~~~~~~~~~~~~~~Wl~~~~~~l~~~~~~~~~~l~~~~~l~-~~~~~~~el~~~------- 314 (1575)
.....++.-+|.. ++...+|... |+++..||.+++...-.... |.+++.|+.|+ +|++|..++.++
T Consensus 135 ~~~~~ekg~kl~~-al~~~q~~~~---c~~i~~wi~dke~~~t~~e~--g~d~e~~evl~~kf~~f~~~~~~~e~rv~ev 208 (2399)
T KOG0040|consen 135 LEKLLEKGIKLLQ-ALKLVQYLRE---CEDILEWIGDKEAIVTSEEL--GQDLEHVEVLQKKFEDFQKELAAHEYRVNEV 208 (2399)
T ss_pred HHHHHHhhHHHHH-HHHHHHHHHH---HHHHHHHhccchheeeHHHh--cccHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 9999999999999 8888888777 99999999777755443333 99999999999 999999999998
Q ss_pred ----HHHHHhhccccchHhHH---HHHHHHHHHHHHHHHHHHHhHhhHhhhhhHhHHHHhHHHHHHHHHHHHHhhccccC
Q psy6935 315 ----IYEKLQAASDESYKETT---NLQAKIQKHQAFEAEVAAHSNAIVVLDNTGNDFYRDCEQAENWMSAREAFLNAEEV 387 (1575)
Q Consensus 315 ----~~l~~~~~~~~~~~i~~---~L~~~w~~L~~~~~~r~~~L~~~l~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~ 387 (1575)
..+...|.| +.+.|.. .++..|..|..++..|+..|-.+ ..++.|.++++....||.+++..|++.+.
T Consensus 209 nq~a~~~~~e~h~-e~~~i~~k~~evn~aw~rl~~la~~rq~~l~~a----~~~qrf~rd~~et~~wi~ek~~~l~sddy 283 (2399)
T KOG0040|consen 209 NQYADKLVEEGHP-ELDLIQKKQDEVNAAWQRLKGLALQRQEKLFGA----AEVQRFNRDVDETIAWIKEKEPVLSSDDY 283 (2399)
T ss_pred HHHHHHHHHcCCC-chHHHHHhHHHHHHHHHHHHHHHHHHHHhhccH----HHHHHhcccHHHHHHHHhhcccccccccc
Confidence 234445555 4444532 99999999999999999999999 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy6935 388 DSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTL 467 (1575)
Q Consensus 388 ~~~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~~~~ 467 (1575)
|.|+..++.++++|+++++++.+...+|..|...|.+|..++|..++.|+.+-+.+...|+.+...+..|...|+.+..+
T Consensus 284 grdl~~~q~l~~~h~g~erdla~l~~kv~~l~~~a~~l~~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~~ 363 (2399)
T KOG0040|consen 284 GRDLASVQALQRKHEGLERDLAALEDKVKELCAEAEKLTLSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYWL 363 (2399)
T ss_pred chhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCcHHHHHHH
Q psy6935 468 QQFSRDADEMENWIAEKLQLAT-EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQAR 546 (1575)
Q Consensus 468 ~~f~~~~~el~~Wl~~~~~~l~-~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~ 546 (1575)
+.|..++.+|..|++.+...++ .+++.|+..++..|..|+.++.+|+++...+..-...|+.+...+++.+++ |+.+
T Consensus 364 hrf~ad~rdL~~w~~~~~aaInadel~~dvag~e~lL~~hqEhK~eIds~~dSf~~~~~~gq~l~~~~~~as~e--v~ek 441 (2399)
T KOG0040|consen 364 HRFLADFRDLSSWINEMKAAINADELAKDVAGAEALLDRHQEHKGEIDAREDSFKSADESGQKLVEAGHYASDE--VREK 441 (2399)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhccccHHHHHccccccHH--HHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccchhchhhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q psy6935 547 LASIADQWEFLTQKTTEKSLKLKEANKQR-TYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKH 625 (1575)
Q Consensus 547 l~~l~~~w~~L~~~~~~r~~~L~~~~~~r-~~L~q~~~~~~f~~~~~~~l~~wL~~~E~~L~~~~~~~~~~~~~~~l~~~ 625 (1575)
+..+...|..|...+. .| ....+|.+++.|. ++..+...|++..+++|...++|.++++++.++++|
T Consensus 442 l~~le~e~~~ll~lwe-----------~r~~~yeqcmd~~lfy-rdteq~d~wmskqeafl~nedlg~sl~S~e~l~kkh 509 (2399)
T KOG0040|consen 442 LEILDNEKSALLELWE-----------ERRIQYEQCMDLQLFY-RDTEQVDTWMSKQEAFLANEDLGDSLDSVEALLKKH 509 (2399)
T ss_pred HHHHhhhHHHHHHHHH-----------HHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhhhhcccchhHHHHHHHH
Confidence 9998888886666555 55 6678889999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHhhHHHHHHHH
Q psy6935 626 EDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWI 705 (1575)
Q Consensus 626 ~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~l~~f~~~~~el~~Wl 705 (1575)
++|+.-+.+++.++..+...|..|+...||+++.+..+...+..|...+......|+..|..+..++.|+++++++..||
T Consensus 510 edfEks~~aQEeki~~~d~~atkli~~~hy~~~dv~~rr~~ll~rr~~l~e~a~~r~~~lk~s~~~q~~~rd~de~~~wi 589 (2399)
T KOG0040|consen 510 EDFEKSLAAQEEKIIALDEFATKLIQGQHYAAEDVAARRDALLARRDALREKAATRRRLLKESLLLQQFYRDSDELKSWI 589 (2399)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 706 AEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKT 785 (1575)
Q Consensus 706 ~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~ 785 (1575)
.++...+.+..|.||++++..+++|+.|..|+.++..+++.+.+.|..++..++. ....|--++.++...|..+....
T Consensus 590 ~Ek~~~a~dd~y~d~~nlk~kvqk~q~fe~el~An~~r~~~i~~~g~~~i~~~h~--A~d~v~~r~~ev~~Lw~~l~~aT 667 (2399)
T KOG0040|consen 590 NEKLKTATDESYKDPTNLKGKVQKHQNFEKELAANKSRLEDIQKTGQELIEGGHY--AADNVTTRLSEVASLWEELLEAT 667 (2399)
T ss_pred HHHhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH--HHHHHhHhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999886 46789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc
Q psy6935 786 TEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDS 865 (1575)
Q Consensus 786 ~~r~~~L~~~~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~ 865 (1575)
..++.+|..+.+..+|...++++..||.+++..|.+.++|+|+.++..+.++|-.|+.++..+...|+.+...+..|...
T Consensus 668 ~~kg~kl~ea~qq~qf~~n~edve~wl~e~e~ql~sed~gkdl~~vqn~~kk~~lLe~~v~a~~d~vd~~~~~a~~fee~ 747 (2399)
T KOG0040|consen 668 KKKGTKLREANQQQQFNRNIEDIELWLSEVEGQVASEDYGKDLTSVQNLQKKHGLLESDVAAHQDRVDGITDLAAQFQEI 747 (2399)
T ss_pred ccccHHHHHHHHhhhhhccHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHH
Q psy6935 866 GQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHK 945 (1575)
Q Consensus 866 ~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~ 945 (1575)
+++++..|..+...|..||..+.+++..|+.+|-.++...+.+++..+...||.+.++.+.+...|.++-.++.++++|+
T Consensus 748 ~h~da~~i~~kqe~L~~r~eal~dp~a~rk~Kl~d~l~~~~l~rd~edE~awi~E~E~~a~st~~gkdlI~~qnl~~k~q 827 (2399)
T KOG0040|consen 748 GHFDAKNIRAKQENLVARYEALKEPLATRKQKLLDSLQLQQLFRDTEDEEAWIREKEPIAASTNRGKDLIGVQNLLKKHQ 827 (2399)
T ss_pred cCCcHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhhhhhchHHHHHHHhhcchhccchhcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 946 RLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWIS 1025 (1575)
Q Consensus 946 ~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~ 1025 (1575)
.+..+|..|.|.+..|...|..++..+|..+++++.++..|+..|..+......|...|+..++.++|..++.+.++|+.
T Consensus 828 ~~~~~ia~he~ri~~i~~r~~~m~~~~~f~aedvk~~~~~L~~~~~slk~ka~~r~~dle~s~q~~qy~ad~~eae~w~~ 907 (2399)
T KOG0040|consen 828 ALLAEIANHEPRIQEVTSRGNKMVEEGHFAAEDVRSRLKSLNQNWESLKAKASQRRQDLEDSLQAQQYLADANEAESWMR 907 (2399)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHhhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhH------------------------------
Q psy6935 1026 EKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLI------------------------------ 1075 (1575)
Q Consensus 1026 e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~------------------------------ 1075 (1575)
++++...+.++|.+.+....++++|+++..+++.+...|..|...++.=.
T Consensus 908 ekEpi~~stdygKdedsa~allkkhea~~~dl~af~~~i~~lr~qa~~cq~Q~tpv~~~g~~~v~alyd~q~kSprev~m 987 (2399)
T KOG0040|consen 908 EKEPIVGSTDYGKDEDSAEALLKKHEALLSDLEAFGDSIQALREQANACRQQEAPVEDVGKECVLALYDYQEKSPREVTM 987 (2399)
T ss_pred ccCcccccccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999988776433110
Q ss_pred -------h--cc------------------------CCCc---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1076 -------E--AK------------------------NHHA---------DSITQRCQQLQLKLDNLMALATKRKTKLMDN 1113 (1575)
Q Consensus 1076 -------~--~~------------------------~~~~---------~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~ 1113 (1575)
. +. .|.. ..|..+.+.+..+|..+.....+|+.+|.+.
T Consensus 988 KkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~~~~~~~l~~~~~i~~rq~qi~~qyr~lld~~~er~~~l~k~ 1067 (2399)
T KOG0040|consen 988 KKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPGSASQPNLRREESIAQRQEQIENQYRSLLDLAEERKRKLEER 1067 (2399)
T ss_pred hhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccCCcchHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 0 00 0011 2455677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCCChH-HH
Q psy6935 1114 SAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTP-AI 1192 (1575)
Q Consensus 1114 ~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~~~~~-~i 1192 (1575)
..-+...+++.++..||.+++. ...++ +++.|..++.+|.+|..++.... +++..++..|+.|...|.+... .|
T Consensus 1068 ~ke~~l~~ea~dl~~wi~ekE~--~~~~v--dle~V~~lqkKfddf~~dlkane-~rLre~n~vAd~l~~~g~t~~~~~i 1142 (2399)
T KOG0040|consen 1068 CKEFLLAREANDLAEWIQEKEA--ENTEV--DLEQVEVLQKKFDDFQKDLKANE-VRLRDINKVADDLTSEGQTEEAAQI 1142 (2399)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH--Hhccc--cHHHHHHHHHHHHHhhhhhccCh-HHHHHHHHHHHhccccccCHHHHHH
Confidence 9888888999999999999993 22344 99999999999999999999986 8999999999999887733222 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcC
Q psy6935 1193 VKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVF 1272 (1575)
Q Consensus 1193 ~~~~~~l~~~w~~L~~~~~~r~~~L~~a~~~~~~~~~l~~~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~ 1272 (1575)
+.. ++.+|..|.....+|...|..+-. + ..|..++.
T Consensus 1143 rqq---ln~rw~~Lqr~~~E~~q~lgsahe-------v-q~fhrd~d--------------------------------- 1178 (2399)
T KOG0040|consen 1143 RQQ---LNARWRSLQRLAEERRQLLGSAHE-------V-QRFHRDAD--------------------------------- 1178 (2399)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHhhHHH-------H-HHHHHhhH---------------------------------
Confidence 443 999999999999999988875532 1 36777776
Q ss_pred chhhHhHHHHhhhhccCCccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCCCCCC--cccHHHHH
Q psy6935 1273 SASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYT--WFTMEALE 1350 (1575)
Q Consensus 1273 ~~~~l~~WL~~~e~~L~~~~~~~~~~~v~~ll~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~~~~~~l~ 1350 (1575)
..-.|+...-..|.+.+.+.++..|+.+.++|+.|.++++.....+..|...+.+|.+. .|+... ..+--.++
T Consensus 1179 ---etk~~i~ek~~al~~~d~g~dl~svQalqrkheg~erdla~L~Dkvt~l~e~a~rLtqs--hp~~aeq~q~qk~eln 1253 (2399)
T KOG0040|consen 1179 ---ETKEWIEEKCQALNADDPGSDLRSVQALQRKHEGFERDLAALGDKVTSLGETAERLSQS--HPDAAEDLQRKQMELN 1253 (2399)
T ss_pred ---HHHHHHHHHHHhhccccccchHHHHHHHHHHhccchhchHHHhhHHHHHHHHHHHhhhc--CCchHHHHHHHHHHHH
Confidence 88899999999999888899999999999999999999999999999999999999873 233332 23667899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHHhh
Q psy6935 1351 DTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEG-----TGSLEQQLEAIKRKAAEVRS 1425 (1575)
Q Consensus 1351 ~~w~~l~~~~~~r~~~Le~a~~~~~~~~~~~~~f~~~~~~l~~Wl~~~~~~~~~~-----~~~l~~ql~~lk~l~~ei~~ 1425 (1575)
..|..|......|.++|-.... .+.|...+.+++.|+..+...+.+. .-..+--++.++.-..++..
T Consensus 1254 e~w~dl~s~~~~Rkekl~ds~d--------~~rfLs~~rdl~~wi~sm~~lvss~ela~d~tg~eAllerhqe~rte~da 1325 (2399)
T KOG0040|consen 1254 EAWEDLQGRAKDRKEKLLDSYD--------LQRFLSDYRDLMNWINSIGGLVSSQELANDVTGAEALLERHQEHRTEIDA 1325 (2399)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHhcchhhhHHHhhhhhhHHHHHHHHHHhhhHHHH
Confidence 9999999999999999977652 3589999999999999987654432 22233456667777888888
Q ss_pred hhhhhHHHHHHHHHHHHhhhhcccCC
Q psy6935 1426 RRSDLKKIEDLGAILEEHLILDNRYT 1451 (1575)
Q Consensus 1426 ~~~~l~~l~~l~~~l~~~~~~~~~~~ 1451 (1575)
+.+-...++..|..+....-+..+-.
T Consensus 1326 Ra~tfqA~eqf~~~ll~~~h~As~ei 1351 (2399)
T KOG0040|consen 1326 RAGTFQAFEQFGNELLDSGHYASPEI 1351 (2399)
T ss_pred HHHHHHHHHHHHHHHHhccCcCCHHH
Confidence 88888888888887776654444333
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.74 E-value=7.7e-16 Score=170.62 Aligned_cols=210 Identities=42% Similarity=0.745 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHH
Q psy6935 798 QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKR 877 (1575)
Q Consensus 798 ~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~ 877 (1575)
+..|...+..+..||.+++..|.+..++.|+..++.++++|+.|..++..+.+.+..+...|+.|...+++++..|...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 56899999999999999999999988777999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhh
Q psy6935 878 QSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPA 957 (1575)
Q Consensus 878 ~~l~~r~~~L~~~~~~R~~~Le~~~~~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~ 957 (1575)
..|+.+|+.|+..+..|...|+.++...+|+..+..+..||.+.+..+...+++.++..++.++..|+.|..++..+++.
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPR 161 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHH
Confidence 99999999999999999999999999888888877899999999888877666668999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 958 IQNVQETGEKLMDVSNLGV-PEIEQRLKLLNQAWSELKQLAANRGQKLDES 1007 (1575)
Q Consensus 958 ~~~l~~~~~~L~~~~~~~~-~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~ 1007 (1575)
+..+...|..|+..+++.. ..|...+..|..+|..|...+..|...|+.+
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 162 LKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999888755 8899999999999999999999999988764
No 6
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.74 E-value=8.5e-16 Score=170.28 Aligned_cols=210 Identities=38% Similarity=0.674 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHH
Q psy6935 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRL 983 (1575)
Q Consensus 904 ~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l 983 (1575)
+..|..++..+..||.+.+..+.+..++.++..++.++++|+.|..++..+.+.+..+...|+.|+..+++....|...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 56899999999999999999888877777999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Q psy6935 984 KLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDR 1063 (1575)
Q Consensus 984 ~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~ 1063 (1575)
+.|+.+|..|+..+..|...|+.++...+|+..+.++..||...+..+...+++.+++.++.++..|+.|..++..+.+.
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPR 161 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHH
Confidence 99999999999999999999999998877777777899999999999986666668999999999999999999999999
Q ss_pred HHHHHHhhhHhHhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1064 CADICSAGNKLIEAKNHHA-DSITQRCQQLQLKLDNLMALATKRKTKLMDN 1113 (1575)
Q Consensus 1064 v~~l~~~~~~L~~~~~~~~-~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~ 1113 (1575)
+..+...|..|....++.. ..+...+..+..+|..|...+..|...|+.+
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 162 LKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999966665 7899999999999999999999999998764
No 7
>KOG0035|consensus
Probab=99.65 E-value=1.2e-16 Score=193.03 Aligned_cols=408 Identities=26% Similarity=0.428 Sum_probs=347.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccCCC-HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCCChHHHHHH
Q psy6935 1117 LQFMWKADVVESWIADKETHVKSEEYGRD-LSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKR 1195 (1575)
Q Consensus 1117 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d-~~~~~~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~ 1195 (1575)
..|...+..-..|....+..+...+++.+ ++.+.+..+.|..|...+..+ ..++..+..++..|......++..+...
T Consensus 397 ~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~-~~~~e~~~ai~~~~~~~~~~~~~~~a~~ 475 (890)
T KOG0035|consen 397 SKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAH-QDNVEAFCAIAHELNELLYDDAKLVAAD 475 (890)
T ss_pred hhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhh-hcchhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 47888888888999999888887777554 688899999999999999954 5889999999999987777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcCchh
Q psy6935 1196 HGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSAS 1275 (1575)
Q Consensus 1196 ~~~l~~~w~~L~~~~~~r~~~L~~a~~~~~~~~~l~~~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~~~~ 1275 (1575)
+..+.+.|.++-.+...|...|.........+..+...|+.++.
T Consensus 476 ~q~i~dq~~~~~~ls~~r~pal~~~~~~~dk~~~~~le~a~Raa------------------------------------ 519 (890)
T KOG0035|consen 476 CQHICDQWDDLGQLSRKRRPALMQMEKVLDKLAVLTLEFAKRAA------------------------------------ 519 (890)
T ss_pred hhhccccccccchhhhhhchhhhhhhhhhHHHHHHHHHHHHHhh------------------------------------
Confidence 99999999999999998999999988888888888889999998
Q ss_pred hHhHHHHhhhhccCCccccCCHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHhhc-ccc----CCCCCCcccHH
Q psy6935 1276 SFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFE---ALAALDQQIKS-FNV----GPNPYTWFTME 1347 (1575)
Q Consensus 1276 ~l~~WL~~~e~~L~~~~~~~~~~~v~~ll~~~~~~~~~l~~~~~~~~---~l~~~~~~l~~-~~~----~~~~~~~~~~~ 1347 (1575)
.+.+||......+.+.....++.+++.++..|..|...+........ .....+..+.. .++ ..+|++...
T Consensus 520 ~~~~~l~~~~~d~~d~~~~~~ire~~~~~~a~~~~k~t~p~a~~~~~~~~~e~~e~~~~~~~~~~~~~~~~np~~~~s-- 597 (890)
T KOG0035|consen 520 PFNNWLKGVQEDLQDNEISYSIREIQRLRAADLQFKSTLPEADGEGQKISDEEKEREKVSEQLNPKIEPDTNPYTTLS-- 597 (890)
T ss_pred hhhhhhhhhhhhcccchhccchHhhhccchhhhhhcccCccccchhhhhhhhhhHHHHhhhhcCcccccccccccccc--
Confidence 99999999888888877778888999888888888776643332222 22223333222 222 345665443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhh----cCCCCHHHHHHHHHHHHHHH
Q psy6935 1348 ALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMM----EGTGSLEQQLEAIKRKAAEV 1423 (1575)
Q Consensus 1348 ~l~~~w~~l~~~~~~r~~~Le~a~~~~~~~~~~~~~f~~~~~~l~~Wl~~~~~~~~----~~~~~l~~ql~~lk~l~~ei 1423 (1575)
+...|+.+......+...+.....+++.+......|...++....|+........ ...+++++++..|+.....+
T Consensus 598 -~~~~~d~v~~~~~~~~~~~~~~~~~q~~~~s~~~~~~q~an~~~p~vp~~~~e~s~~~~~~~gt~e~~~~rLr~~~~~~ 676 (890)
T KOG0035|consen 598 -IYGKWDAVLSSVPDRDSIEANVHARQQPNESLRRVFAQQANLDGPWVPAKMEESSRININDQGTLEDRLERLRETEERS 676 (890)
T ss_pred -cccchhhhcccccccchhhHHHHHhhccCccccccccccccCCCcccCchhhcccccccccCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999888889888999999999999999999988765544 34999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhcccCCcchhhhhhhhHHHHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhccc
Q psy6935 1424 RSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHF 1503 (1575)
Q Consensus 1424 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~ 1503 (1575)
...++.++.+....+.+.+..+++++++.+++..++..|+...+.+.+.++..+++|..+++.+.+...+.+|+..|++|
T Consensus 677 ~~~k~~~~~~~~~~q~~~~~~~~~~~~~~~~~e~~~~g~e~~~~~~~~~~~~~en~il~R~sk~~sQ~v~~ElrAle~~~ 756 (890)
T KOG0035|consen 677 MNYKSNGDLLAKQHQLMQEDIIFENKHTRYTMEDLKVGWEELLTIIERTINESENEILERDSKGTSQYVLDELRALENEQ 756 (890)
T ss_pred hccCcchhHHHHHHHHhhhhccccccccccchhhccccccccccccccccccHHHHHHHhcccchhHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1504 DKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1504 D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
|+...|..++.+|..||.++|++... +.+-..++..++...|+++-|+++|.+|..+|...
T Consensus 757 ~~~d~~aa~~e~~~~~Lmslg~~~e~--ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 757 DKIDGGAASPEELLRCLMSLGYNTEE--EEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHhhcccCCHHHHHHHHHhcCcccch--hHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 99999999999999999999998721 12234567778888899999999999999999754
No 8
>KOG4286|consensus
Probab=99.57 E-value=9e-12 Score=143.95 Aligned_cols=306 Identities=16% Similarity=0.262 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhc--cCCCchhHHHH
Q psy6935 1011 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEA--KNHHADSITQR 1088 (1575)
Q Consensus 1011 ~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~--~~~~~~~i~~~ 1088 (1575)
+.|..++.++..|+-.... .....-.|..........++.+..++++ ..+-..+..|+.. +..++..+.
T Consensus 4 q~~~~~l~~f~~w~l~d~~--~~~~~l~dt~~~~~~~~~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~l~-- 74 (966)
T KOG4286|consen 4 QQFPLDLEKFLAWLLQDAT--RKERLLEDSKGVKELMKQWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVLLQ-- 74 (966)
T ss_pred hhhhhhHHHHHHHHHhhhh--hhHhhhhcccccHHHHHHHhcccccccc-----ccCchHHHHHHHHhcCCccchHHH--
Confidence 5678889999999922110 0111112333344555666666667666 3344455556655 222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhccc-ccCCCHHHHHHHHHHHHHHHHhhhhh
Q psy6935 1089 CQQLQLKLDNLMALATKRKTKLMDNSAY-LQFMWKADVVESWIADKETHVKSE-EYGRDLSTVQTLLTKQETFDAGLHAF 1166 (1575)
Q Consensus 1089 l~~L~~~w~~L~~~~~~r~~~Le~~~~~-~~f~~~~~~l~~Wl~~~e~~l~~~-~~~~d~~~~~~l~~~~~~f~~el~~~ 1166 (1575)
.++.+|+.|......-+.+|+.+.+. .++.....++..|+..+...+... |+|.|+..+..+-.-|++|+++|+..
T Consensus 75 --~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k 152 (966)
T KOG4286|consen 75 --LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK 152 (966)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 49999999999999999999988755 488889999999999998888765 89999999999999999999999997
Q ss_pred ccccHHHHHHHHHHHHhcCCCCh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1167 EHEGIQNITTLKDQLVASNHDQT--------------------PAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQ 1226 (1575)
Q Consensus 1167 ~~~~~~~~~~~~~~L~~~~~~~~--------------------~~i~~~~~~l~~~w~~L~~~~~~r~~~L~~a~~~~~~ 1226 (1575)
. ..+-++.+.|..++...|-.+ ..+...-+.++..|+.|...+....+.++.++.++++
T Consensus 153 ~-~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~e 231 (966)
T KOG4286|consen 153 E-PVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQE 231 (966)
T ss_pred c-cHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 6 788888888888776443211 1233344788999999999999988899888887775
Q ss_pred HHHHHHHHHHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcCchhhHhHHHHhhhhccCC--ccccCCHHHHHHHH
Q psy6935 1227 IEDLYLTFAKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWFENAEEDLTD--PVRCNSIEEIRALR 1304 (1575)
Q Consensus 1227 ~~~l~~~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~~~~~l~~WL~~~e~~L~~--~~~~~~~~~v~~ll 1304 (1575)
+..... .+.-=|..+|..... |+-.--++.+..-+
T Consensus 232 lq~a~~-------------------------------------------el~~~l~~ae~~~~~w~pvgdl~idsl~~h~ 268 (966)
T KOG4286|consen 232 LQEATD-------------------------------------------ELDLKLRQAEVIKGSWQPVGDLLIDSLQDHL 268 (966)
T ss_pred HHHHHH-------------------------------------------HHHHhhhHHHhhhhccccHHHHHHhHHHHHH
Confidence 544332 233333333333321 22122345677888
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1305 EAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAKEA 1371 (1575)
Q Consensus 1305 ~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~~~~r~~~Le~a~ 1371 (1575)
.+..+|..+++.....|+.++.++.+|........++...++++|+.||..|+..+..|..+|..+.
T Consensus 269 e~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~ls~~~~~~le~~n~rwk~Lq~SV~~rl~qlrna~ 335 (966)
T KOG4286|consen 269 EKVKALRGEIAPLKENVSHVNDLARQLTTLDIQLSPYNLSTLEDLNTRWKLLQVSVPDRLTQLRNAH 335 (966)
T ss_pred HHHHHHHhhcchHhhchhhHHHHHHHhhhcccCCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999876666777777999999999999999999999998876
No 9
>KOG4286|consensus
Probab=99.54 E-value=3.6e-12 Score=147.17 Aligned_cols=310 Identities=18% Similarity=0.277 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHH
Q psy6935 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRL 983 (1575)
Q Consensus 904 ~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l 983 (1575)
.+.|..++..+..|+-..... ....-.|..........++.+..++.+ ..|-..+..|+.+...+...+.-.
T Consensus 3 ~q~~~~~l~~f~~w~l~d~~~--~~~~l~dt~~~~~~~~~~~~~~~e~~a-----~~v~~~~~kl~~~l~~~~~~~~l~- 74 (966)
T KOG4286|consen 3 LQQFPLDLEKFLAWLLQDATR--KERLLEDSKGVKELMKQWQDLQGEIEA-----HNLDENSQKILRSLEGSDDAVLLQ- 74 (966)
T ss_pred hhhhhhhHHHHHHHHHhhhhh--hHhhhhcccccHHHHHHHhcccccccc-----ccCchHHHHHHHHhcCCccchHHH-
Confidence 356888899999999421110 000011122234555666777777766 455666777765543322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhH
Q psy6935 984 KLLNQAWSELKQLAANRGQKLDESL-TYQHFLAKVEEEEAWISEKQQLLS-VEDYGDTMAAVQGLLKKHDAFETDFSVHR 1061 (1575)
Q Consensus 984 ~~L~~~w~~L~~~~~~r~~~L~~~~-~~~~f~~~~~el~~Wl~e~e~~l~-~~~~~~d~~~~~~~l~~~~~l~~el~~~~ 1061 (1575)
-++.+|..|.+....-+..|+.+. .|.++...+.++..|++-+...|+ ..+.|+|.+.++.+-.-|++|+++|+.+.
T Consensus 75 -~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~ 153 (966)
T KOG4286|consen 75 -LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKE 153 (966)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhcc
Confidence 399999999999999999999988 689999999999999999988887 57889999999999999999999999999
Q ss_pred HHHHHHHHhhhHhHhccCCC-------------c-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy6935 1062 DRCADICSAGNKLIEAKNHH-------------A-------DSITQRCQQLQLKLDNLMALATKRKTKLMDNSA-YLQFM 1120 (1575)
Q Consensus 1062 ~~v~~l~~~~~~L~~~~~~~-------------~-------~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~-~~~f~ 1120 (1575)
+.+-...+.|+.++...+-. . ..+...-..++..|..|...+..+.+..+.++. +.++.
T Consensus 154 ~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq 233 (966)
T KOG4286|consen 154 PVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQ 233 (966)
T ss_pred cHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHH
Confidence 99999999998887542210 0 133345578899999999999999999999985 46888
Q ss_pred HHHHHHHHHHHhhhhhhcccccCCC--HHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy6935 1121 WKADVVESWIADKETHVKSEEYGRD--LSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGD 1198 (1575)
Q Consensus 1121 ~~~~~l~~Wl~~~e~~l~~~~~~~d--~~~~~~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~ 1198 (1575)
..++++..-|..++....+.....| ++++..-+++.+.|..+|.... ..|..|+.++.+|....-.-+......++.
T Consensus 234 ~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~-~~v~~vndla~ql~~~d~~ls~~~~~~le~ 312 (966)
T KOG4286|consen 234 EATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLK-ENVSHVNDLARQLTTLDIQLSPYNLSTLED 312 (966)
T ss_pred HHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHh-hchhhHHHHHHHhhhcccCCChhhHhhHHH
Confidence 8999999999999998887633333 6788888999999999999876 899999999999998776667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1199 VIARWQKLLGDSNARKQRLLRMQEQ 1223 (1575)
Q Consensus 1199 l~~~w~~L~~~~~~r~~~L~~a~~~ 1223 (1575)
||.||.-|+..+..|...|..|...
T Consensus 313 ~n~rwk~Lq~SV~~rl~qlrna~~d 337 (966)
T KOG4286|consen 313 LNTRWKLLQVSVPDRLTQLRNAHRD 337 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887543
No 10
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.17 E-value=0.00023 Score=97.64 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Q psy6935 1084 SITQRCQQLQLKLDNLMALATKRKTKLMDNSAY--LQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDA 1161 (1575)
Q Consensus 1084 ~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~~--~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l~~~~~~f~~ 1161 (1575)
.........+..|..+..........+.....- ..+....+.+..|....-. ..|.|...+..+-.+.+.+..
T Consensus 711 ~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~-----~~GvD~~~I~~l~~~i~~L~~ 785 (1201)
T PF12128_consen 711 QLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA-----GKGVDPERIQQLKQEIEQLEK 785 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHH
Confidence 445555677788888888888887777776644 4788888888888875443 457787778777777777777
Q ss_pred hhhhhc
Q psy6935 1162 GLHAFE 1167 (1575)
Q Consensus 1162 el~~~~ 1167 (1575)
+|....
T Consensus 786 ~l~~ie 791 (1201)
T PF12128_consen 786 ELKRIE 791 (1201)
T ss_pred HHHHHH
Confidence 776543
No 11
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.08 E-value=2.6e-10 Score=102.10 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcccCC-CCCCcccHHHHHHHHHH-cCCCCCCCCCCCCh-HHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1490 EDALKEFSMMFKHFDK-DKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPD-PEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~~D~-~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+..+..+..+|+.||+ +++|+|+..||+.+|.+ +|..+ ++ .++..||..+|.|+||.|+|+||+.+|...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l-------s~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL-------KDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc-------cCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4556789999999999 99999999999999999 99888 77 899999999999999999999999999865
Q ss_pred h
Q psy6935 1567 E 1567 (1575)
Q Consensus 1567 ~ 1567 (1575)
.
T Consensus 77 ~ 77 (89)
T cd05022 77 A 77 (89)
T ss_pred H
Confidence 4
No 12
>smart00150 SPEC Spectrin repeats.
Probab=99.06 E-value=1.8e-09 Score=103.01 Aligned_cols=101 Identities=39% Similarity=0.712 Sum_probs=96.4
Q ss_pred hHHHHhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHH
Q psy6935 362 NDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRK 441 (1575)
Q Consensus 362 ~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~ 441 (1575)
+.|...+..+..||.+++..+...++|.+++.++.++++|+.|..+|..+++.|..+...|..|+..+|+++..|..++.
T Consensus 1 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~ 80 (101)
T smart00150 1 QQFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLE 80 (101)
T ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 36999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6935 442 QVLDRWRLLKEALIEKRSRLG 462 (1575)
Q Consensus 442 ~L~~rw~~l~~~~~~r~~~L~ 462 (1575)
.|+.+|+.|+..+.+|...|+
T Consensus 81 ~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 81 ELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998874
No 13
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.04 E-value=2.9e-09 Score=102.41 Aligned_cols=104 Identities=27% Similarity=0.497 Sum_probs=99.6
Q ss_pred hHhHHHHhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHH
Q psy6935 360 TGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDK 439 (1575)
Q Consensus 360 ~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~ 439 (1575)
.++.|...++.+..||..++..|...++|.+++.++.++.+|+.|..+|..+++.|+.|...|..|+..+|+++..|..+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 57899999999999999999999877779999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy6935 440 RKQVLDRWRLLKEALIEKRSRLGE 463 (1575)
Q Consensus 440 l~~L~~rw~~l~~~~~~r~~~L~~ 463 (1575)
+..|+.+|+.|+..+..|...|++
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999874
No 14
>smart00150 SPEC Spectrin repeats.
Probab=99.03 E-value=2.1e-09 Score=102.45 Aligned_cols=100 Identities=46% Similarity=0.781 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHHHH
Q psy6935 906 QFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKL 985 (1575)
Q Consensus 906 ~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~ 985 (1575)
+|..++.++..||.+++..+.+.++|.++..++.++++|+.|+.++..+++.+..+...|..|+..++++++.|..++..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 68999999999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6935 986 LNQAWSELKQLAANRGQKLD 1005 (1575)
Q Consensus 986 L~~~w~~L~~~~~~r~~~L~ 1005 (1575)
|+.+|..|+..+..|...|+
T Consensus 82 l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 82 LNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988763
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.98 E-value=1.2e-09 Score=107.51 Aligned_cols=68 Identities=31% Similarity=0.537 Sum_probs=63.9
Q ss_pred HHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1493 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1493 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
.+++..+|+.||+||+|+|+..+|..+++++|..+ ++++|..++..+|+|++|.|+|++|+..+...+
T Consensus 91 ~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~-------~deev~~ll~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 91 EEELREAFKLFDKDHDGYISIGELRRVLKSLGERL-------SDEEVEKLLKEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC-------CHHHHHHHHHhcCCCCCceEeHHHHHHHHhccC
Confidence 45689999999999999999999999999999999 999999999999999999999999999887543
No 16
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=98.98 E-value=9.8e-09 Score=98.65 Aligned_cols=104 Identities=22% Similarity=0.452 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHH
Q psy6935 1009 TYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQR 1088 (1575)
Q Consensus 1009 ~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~ 1088 (1575)
.+++|...++++..||..++..+...++|.++..++.++.+|+.|..+|..+.+.++.++..|..|...+++++..|..+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 46799999999999999999999877779999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1089 CQQLQLKLDNLMALATKRKTKLMD 1112 (1575)
Q Consensus 1089 l~~L~~~w~~L~~~~~~r~~~Le~ 1112 (1575)
+..|+.+|..|...+..|...|++
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999974
No 17
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.96 E-value=2e-09 Score=96.96 Aligned_cols=72 Identities=24% Similarity=0.444 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcccC-CCCCC-cccHHHHHHHHHH-----cCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy6935 1490 EDALKEFSMMFKHFD-KDKSG-KLNQTEFKSCLRA-----LGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAF 1562 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 1562 (1575)
+.-+..++.+|+.|| +||+| +|+..+|+.+|++ +|..+ ++.++..++..+|+|++|.|+|++|+.+
T Consensus 4 e~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~-------~~~~v~~~i~~~D~n~dG~v~f~eF~~l 76 (88)
T cd05027 4 EKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK-------EQEVVDKVMETLDSDGDGECDFQEFMAF 76 (88)
T ss_pred HHHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC-------CHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 345678999999998 89999 5999999999999 89888 8899999999999999999999999999
Q ss_pred Hhhhhh
Q psy6935 1563 MISKET 1568 (1575)
Q Consensus 1563 ~~~~~~ 1568 (1575)
+.....
T Consensus 77 i~~~~~ 82 (88)
T cd05027 77 VAMVTT 82 (88)
T ss_pred HHHHHH
Confidence 976543
No 18
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.91 E-value=2.4e-09 Score=92.20 Aligned_cols=61 Identities=36% Similarity=0.726 Sum_probs=54.6
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHH----HHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE----FEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
++.+|+.||+|++|+|+..||..++..+|..+ ++.. +..++..+|+|+||.|+|+||+.+|
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~-------~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDM-------SDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS-------THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 68999999999999999999999999999876 4444 4555999999999999999999986
No 19
>KOG0027|consensus
Probab=98.89 E-value=6.4e-09 Score=106.36 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=79.5
Q ss_pred hhhhhhhhHHHHHHHHHhhccchHHhHhhhhc-CCCCH--HHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCC
Q psy6935 1454 STVGLAQQWDQLDQLGMRMQHNLEQQIQARNQ-SGVSE--DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMV 1530 (1575)
Q Consensus 1454 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~ 1530 (1575)
+...+...+..+.....+.+.+-++....... ...+. ...++++.+|+.||+|++|+|+..||+.+|..+|...
T Consensus 42 t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--- 118 (151)
T KOG0027|consen 42 TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--- 118 (151)
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC---
Confidence 44444444444444444455555554433221 11121 2456789999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1531 EEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1531 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+..++..++..+|.|+||.|+|++|+.+|...
T Consensus 119 ----~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~~ 150 (151)
T KOG0027|consen 119 ----TDEECKEMIREVDVDGDGKVNFEEFVKMMSGK 150 (151)
T ss_pred ----CHHHHHHHHHhcCCCCCCeEeHHHHHHHHhcC
Confidence 99999999999999999999999999999753
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.80 E-value=1.7e-08 Score=93.86 Aligned_cols=71 Identities=23% Similarity=0.424 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1487 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
.++++++..++.+|..||+|++|.|+..+|+.+|+.+|. +..++..|+..+|.+++|.|+|++|+.+|...
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~---------~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL---------PQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC---------CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 467889999999999999999999999999999999874 77899999999999999999999999988753
No 21
>KOG0027|consensus
Probab=98.79 E-value=1.5e-08 Score=103.63 Aligned_cols=73 Identities=29% Similarity=0.566 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1488 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
++.++..+++.+|..||+|++|+|+..+|..+++++|..| +..++..++..+|++|+|.|+|++|+.+|....
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~-------t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNP-------TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 5677889999999999999999999999999999999999 999999999999999999999999999998654
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.78 E-value=2.1e-08 Score=98.87 Aligned_cols=77 Identities=23% Similarity=0.524 Sum_probs=72.0
Q ss_pred hhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy6935 1483 RNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAF 1562 (1575)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 1562 (1575)
..++.++++++++++++|..||+|++|.|++.+|..+++++|+++ |..++.+|+..+|. |.|.|+|.+|+.+
T Consensus 9 ~~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~-------s~~ei~~l~~~~d~-~~~~idf~~Fl~~ 80 (160)
T COG5126 9 LTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNP-------SEAEINKLFEEIDA-GNETVDFPEFLTV 80 (160)
T ss_pred hhcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCC-------cHHHHHHHHHhccC-CCCccCHHHHHHH
Confidence 446779999999999999999999999999999999999999999 99999999999998 8999999999999
Q ss_pred Hhhhh
Q psy6935 1563 MISKE 1567 (1575)
Q Consensus 1563 ~~~~~ 1567 (1575)
|....
T Consensus 81 ms~~~ 85 (160)
T COG5126 81 MSVKL 85 (160)
T ss_pred HHHHh
Confidence 97654
No 23
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.75 E-value=2.6e-08 Score=91.36 Aligned_cols=71 Identities=23% Similarity=0.415 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcccC-CCCCC-cccHHHHHHHHHH-cC----CCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy6935 1490 EDALKEFSMMFKHFD-KDKSG-KLNQTEFKSCLRA-LG----YDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAF 1562 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~g----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 1562 (1575)
+.-+..+..+|..|| +||+| +|+..||+.+|.. +| ... ++.++..|+..+|.|+||.|+|+||+.+
T Consensus 6 e~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~-------~~~~v~~i~~elD~n~dG~Idf~EF~~l 78 (93)
T cd05026 6 EGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK-------DPMLVDKIMNDLDSNKDNEVDFNEFVVL 78 (93)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc-------CHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 456778899999999 89998 5999999999977 33 333 6789999999999999999999999999
Q ss_pred Hhhhh
Q psy6935 1563 MISKE 1567 (1575)
Q Consensus 1563 ~~~~~ 1567 (1575)
|....
T Consensus 79 ~~~l~ 83 (93)
T cd05026 79 VAALT 83 (93)
T ss_pred HHHHH
Confidence 97653
No 24
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.73 E-value=3.6e-08 Score=88.85 Aligned_cols=72 Identities=24% Similarity=0.504 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcccCC-CC-CCcccHHHHHHHHH---HcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1490 EDALKEFSMMFKHFDK-DK-SGKLNQTEFKSCLR---ALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~~D~-~~-~g~i~~~el~~~l~---~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
++.+..+-..|..||. +| +|+|+..||+.+|. ++|.++ +++++.+++..+|.|++|.|+|+||+.+|.
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~-------t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKL-------QDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 5667788999999997 77 89999999999996 479888 999999999999999999999999999998
Q ss_pred hhhh
Q psy6935 1565 SKET 1568 (1575)
Q Consensus 1565 ~~~~ 1568 (1575)
....
T Consensus 79 ~l~~ 82 (88)
T cd05029 79 ALAL 82 (88)
T ss_pred HHHH
Confidence 7543
No 25
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.73 E-value=3.4e-08 Score=91.04 Aligned_cols=70 Identities=24% Similarity=0.419 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcccC-CCCCC-cccHHHHHHHHHH-cCC----CCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1491 DALKEFSMMFKHFD-KDKSG-KLNQTEFKSCLRA-LGY----DLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1491 ~~~~~~~~~F~~~D-~~~~g-~i~~~el~~~l~~-~g~----~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
.-+..++.+|..|| +|++| +|+..+|+.+|+. +|. .+ ++.++..++..+|++++|.|+|++|+.+|
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~-------s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQK-------DADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCC-------CHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 34567899999997 99999 5999999999986 553 45 78899999999999999999999999998
Q ss_pred hhhh
Q psy6935 1564 ISKE 1567 (1575)
Q Consensus 1564 ~~~~ 1567 (1575)
....
T Consensus 79 ~~~~ 82 (92)
T cd05025 79 AALT 82 (92)
T ss_pred HHHH
Confidence 7654
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.71 E-value=3.4e-08 Score=91.46 Aligned_cols=69 Identities=22% Similarity=0.444 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcccCC-CC-CCcccHHHHHHHHHH-----cCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1491 DALKEFSMMFKHFDK-DK-SGKLNQTEFKSCLRA-----LGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1491 ~~~~~~~~~F~~~D~-~~-~g~i~~~el~~~l~~-----~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
.-+..+..+|..||. |+ +|+|+..||+.+|+. +|..+ +..++..++..+|.+++|.|+|++|+.+|
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~-------s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK-------DPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc-------cHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345678999999997 97 799999999999987 57777 88999999999999999999999999998
Q ss_pred hhh
Q psy6935 1564 ISK 1566 (1575)
Q Consensus 1564 ~~~ 1566 (1575)
...
T Consensus 78 ~~~ 80 (94)
T cd05031 78 AGL 80 (94)
T ss_pred HHH
Confidence 753
No 27
>KOG0028|consensus
Probab=98.68 E-value=4.6e-08 Score=93.08 Aligned_cols=76 Identities=29% Similarity=0.520 Sum_probs=71.1
Q ss_pred cCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1485 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1485 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
.+.+++++..+++..|..||.+++|+|++.||+-+++++|+.+ ...++.+++..+|.+|.|.|+|++|+..|+
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~-------~k~ei~kll~d~dk~~~g~i~fe~f~~~mt 96 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEP-------KKEEILKLLADVDKEGSGKITFEDFRRVMT 96 (172)
T ss_pred CccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCc-------chHHHHHHHHhhhhccCceechHHHHHHHH
Confidence 4568889999999999999999999999999999999999999 889999999999999999999999999987
Q ss_pred hhh
Q psy6935 1565 SKE 1567 (1575)
Q Consensus 1565 ~~~ 1567 (1575)
...
T Consensus 97 ~k~ 99 (172)
T KOG0028|consen 97 VKL 99 (172)
T ss_pred HHH
Confidence 654
No 28
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.66 E-value=5.6e-08 Score=89.09 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcccCC--CCCCcccHHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1490 EDALKEFSMMFKHFDK--DKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~~D~--~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+++++.++.+|..||+ |++|.|+..+|..+++. +|..++. +.+..++..|+..+|.+++|.|+|++|+.+|...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~---~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKN---QKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccC---CCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678899999999999 89999999999999986 5654410 0158899999999999999999999999998764
Q ss_pred h
Q psy6935 1567 E 1567 (1575)
Q Consensus 1567 ~ 1567 (1575)
.
T Consensus 81 ~ 81 (88)
T cd00213 81 A 81 (88)
T ss_pred H
Confidence 3
No 29
>KOG0037|consensus
Probab=98.66 E-value=7.8e-08 Score=97.37 Aligned_cols=104 Identities=15% Similarity=0.316 Sum_probs=89.7
Q ss_pred ccCCcchhhhhhhhHHHHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCC
Q psy6935 1448 NRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527 (1575)
Q Consensus 1448 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 1527 (1575)
..+..+++...+.....+.....+.+.+.++....+ -++.++.+|+.||+|++|.|+..||+.+|..+|+.+
T Consensus 86 ~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~--------~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L 157 (221)
T KOG0037|consen 86 GTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK--------YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL 157 (221)
T ss_pred CCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH--------HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC
Confidence 456678888888777777777777788777766654 367799999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1528 PMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1528 ~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
++.-.+.+++.+|+.++|.|.|++|+.+++..
T Consensus 158 -------spq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 158 -------SPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred -------CHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 89999999999998889999999999998753
No 30
>KOG0030|consensus
Probab=98.60 E-value=6.4e-08 Score=89.60 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCC--CCCcccHHHHHHHHh
Q psy6935 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN--RDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1487 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~ 1564 (1575)
..+++++.+++++|..||+.+||+|+...+.+||+++|.+| |+.++.+.+..++++ +-.+|+|++|+.++.
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nP-------T~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNP-------TNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCC-------cHHHHHHHHcCcccchhhhhhhhHHHHHHHHH
Confidence 45778889999999999999999999999999999999999 999999999998877 557999999999997
Q ss_pred hhh
Q psy6935 1565 SKE 1567 (1575)
Q Consensus 1565 ~~~ 1567 (1575)
...
T Consensus 77 ~va 79 (152)
T KOG0030|consen 77 QVA 79 (152)
T ss_pred HHH
Confidence 644
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=98.59 E-value=1.1e-07 Score=77.49 Aligned_cols=61 Identities=25% Similarity=0.537 Sum_probs=57.4
Q ss_pred HHhcccCCCCCCcccHHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHHHhCCCCC-CcccHHHHHHHHhh
Q psy6935 1498 MMFKHFDKDKSGKLNQTEFKSCLRALGY-DLPMVEEGQPDPEFEAILDLVDPNRD-GHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1498 ~~F~~~D~~~~g~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~ 1565 (1575)
.+|..||++++|.|....++.+|+++|. .| ++.++..+...+||+|. |.|+|+.|+..|..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p-------~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSP-------EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCC-------cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3699999999999999999999999999 77 89999999999999988 99999999999964
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.57 E-value=1.2e-07 Score=82.03 Aligned_cols=61 Identities=26% Similarity=0.469 Sum_probs=56.1
Q ss_pred HHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1497 SMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1497 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+.+|..||+|++|.|+..+++.++..+|. +..++..++..+|.+++|.|+|++|+.+|...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~---------~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL---------PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC---------CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 67899999999999999999999999885 57789999999999999999999999988654
No 33
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.56 E-value=0.019 Score=79.29 Aligned_cols=156 Identities=12% Similarity=0.184 Sum_probs=82.9
Q ss_pred HhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Q psy6935 366 RDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLD 445 (1575)
Q Consensus 366 ~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~ 445 (1575)
.....+..|+.+......-....+....+......+..+...+......+....................+...+..+..
T Consensus 223 ~~~~~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 302 (1201)
T PF12128_consen 223 LKKNDIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLED 302 (1201)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45567778887776543222233344455555555555556665555555555554444433211223344444445555
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Q psy6935 446 RWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLA 525 (1575)
Q Consensus 446 rw~~l~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~~~~~~l~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~ 525 (1575)
.|.........+... ...++..+...|...+..-..-...+++.+...+.+.-.+..++...+..+..|..
T Consensus 303 ~~~e~~~~~~~~~~~---------~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~ 373 (1201)
T PF12128_consen 303 EIKELRDELNKELSA---------LNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTS 373 (1201)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 555444444444333 33444455555555554444222335666666667666777777666666666666
Q ss_pred HHHHH
Q psy6935 526 MGQNL 530 (1575)
Q Consensus 526 ~g~~L 530 (1575)
....+
T Consensus 374 ~~~di 378 (1201)
T PF12128_consen 374 KHQDI 378 (1201)
T ss_pred HHHHH
Confidence 66555
No 34
>KOG0028|consensus
Probab=98.55 E-value=2.1e-07 Score=88.71 Aligned_cols=67 Identities=31% Similarity=0.579 Sum_probs=63.8
Q ss_pred HHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1492 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
..+++..+|+.||-|++|+||..+|+.+.+.||.++ +++++.+||..+|.+++|-|+-+||+.+|.+
T Consensus 104 t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl-------tD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 104 TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL-------TDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc-------cHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 456789999999999999999999999999999999 9999999999999999999999999999874
No 35
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.53 E-value=1.9e-07 Score=76.29 Aligned_cols=52 Identities=31% Similarity=0.636 Sum_probs=49.2
Q ss_pred CCCcccHHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1507 KSGKLNQTEFKSCLRALGYD-LPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1507 ~~g~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
.+|.|+.++|..+|..+|.. + ++.++..++..+|++++|.|+|+||+.+|..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~-------s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDL-------SEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSS-------CHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCC-------CHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999889999 8 9999999999999999999999999999864
No 36
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.53 E-value=3e-07 Score=82.95 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcc-cCCCCCC-cccHHHHHHHHHHc-----CCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy6935 1490 EDALKEFSMMFKH-FDKDKSG-KLNQTEFKSCLRAL-----GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAF 1562 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~-~D~~~~g-~i~~~el~~~l~~~-----g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 1562 (1575)
+..+..+..+|.. +|+||+| +|+..||+..+... +... ++.++..++..+|.|+||.|+|+||+.+
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~-------~~~~~~~ll~~~D~d~DG~I~f~EF~~l 77 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQK-------DPGVLDRMMKKLDLNSDGQLDFQEFLNL 77 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCC-------CHHHHHHHHHHcCCCCCCcCcHHHHHHH
Confidence 4566778999999 8899986 99999999999875 3333 5788999999999999999999999999
Q ss_pred Hhhhh
Q psy6935 1563 MISKE 1567 (1575)
Q Consensus 1563 ~~~~~ 1567 (1575)
|....
T Consensus 78 ~~~l~ 82 (89)
T cd05023 78 IGGLA 82 (89)
T ss_pred HHHHH
Confidence 97654
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.35 E-value=1.1e-06 Score=83.16 Aligned_cols=65 Identities=23% Similarity=0.381 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1489 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1489 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
.+.....+...|..||.|+||+|+.+||..++ ..+ ....+..++..+|.|+||.|||+||+.++.
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~-------~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDP-------NEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccc-------hHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45667789999999999999999999999876 233 566789999999999999999999999983
No 38
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.26 E-value=2.4e-06 Score=72.67 Aligned_cols=61 Identities=31% Similarity=0.678 Sum_probs=57.3
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
+..+|..+|.+++|.|+..+|..++..+|..+ +...+..++..+|.+++|.|+|++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGL-------SEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57789999999999999999999999999888 88999999999999999999999999876
No 39
>PTZ00183 centrin; Provisional
Probab=98.23 E-value=6.8e-06 Score=85.68 Aligned_cols=66 Identities=32% Similarity=0.575 Sum_probs=61.7
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
..++.+|+.||++++|+|+..+|..++..+|..+ ++.++..++..+|.+++|.|+|++|+.+|...
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETI-------TDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC-------CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 4579999999999999999999999999999888 89999999999999999999999999999764
No 40
>PTZ00183 centrin; Provisional
Probab=98.23 E-value=3.4e-06 Score=87.92 Aligned_cols=74 Identities=30% Similarity=0.614 Sum_probs=64.1
Q ss_pred cCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1485 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1485 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
..+++++++.++..+|..||.+++|+|+..+|..+|..+|..+ +...+..++..+|.+++|.|+|.+|+.++.
T Consensus 8 ~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~-------~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 8 RPGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEP-------KKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 3567888889999999999999999999999999999888877 777888899889988999999999988765
Q ss_pred h
Q psy6935 1565 S 1565 (1575)
Q Consensus 1565 ~ 1565 (1575)
.
T Consensus 81 ~ 81 (158)
T PTZ00183 81 K 81 (158)
T ss_pred H
Confidence 4
No 41
>KOG0030|consensus
Probab=98.23 E-value=3.2e-06 Score=78.63 Aligned_cols=65 Identities=22% Similarity=0.494 Sum_probs=59.2
Q ss_pred HHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1492 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
..++|-+.+++||++++|+|...+|+.+|..+|..+ ++.+++.++.-.. |++|.|+|+.|+..+.
T Consensus 86 t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl-------~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 86 TYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL-------TEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred cHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc-------cHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 356789999999999999999999999999999999 9999999998764 7889999999998764
No 42
>KOG0031|consensus
Probab=98.20 E-value=4.2e-06 Score=79.29 Aligned_cols=72 Identities=18% Similarity=0.427 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1486 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
..++..++.+|+++|..+|.|+||+|+..+|++.+.++|-.+ ++++++.|+.+. .|.|+|.-|+.++..
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~-------~d~elDaM~~Ea----~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIA-------SDEELDAMMKEA----PGPINFTVFLTMFGE 92 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCC-------CHHHHHHHHHhC----CCCeeHHHHHHHHHH
Confidence 457889999999999999999999999999999999999998 888999998864 468999999888876
Q ss_pred hhh
Q psy6935 1566 KET 1568 (1575)
Q Consensus 1566 ~~~ 1568 (1575)
+.+
T Consensus 93 kL~ 95 (171)
T KOG0031|consen 93 KLN 95 (171)
T ss_pred Hhc
Confidence 544
No 43
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.20 E-value=3.8e-06 Score=76.25 Aligned_cols=75 Identities=23% Similarity=0.444 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcccCCC--CCCcccHHHHHHHHH-HcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1490 EDALKEFSMMFKHFDKD--KSGKLNQTEFKSCLR-ALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~~D~~--~~g~i~~~el~~~l~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+.-+..+...|..|+.. ++|+|+..||+.+|. .+|..++ ...++.++..++..+|.+++|.|+|++|+.+|...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t---~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLK---KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhc---cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34566788999999855 589999999999997 5666551 00028899999999999999999999999999765
Q ss_pred h
Q psy6935 1567 E 1567 (1575)
Q Consensus 1567 ~ 1567 (1575)
.
T Consensus 81 ~ 81 (88)
T cd05030 81 G 81 (88)
T ss_pred H
Confidence 4
No 44
>PTZ00184 calmodulin; Provisional
Probab=98.19 E-value=4.6e-06 Score=86.01 Aligned_cols=72 Identities=26% Similarity=0.612 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1487 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
.+++++.+.+...|..||.+++|.|+..+|..++..+|.++ +...+..++..+|.+++|.|+|++|+.++..
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-------TEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCC-------CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 46788888999999999999999999999999999999888 7788999999999999999999999988764
No 45
>KOG0041|consensus
Probab=98.18 E-value=3.4e-06 Score=83.20 Aligned_cols=76 Identities=25% Similarity=0.456 Sum_probs=69.5
Q ss_pred cCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1485 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1485 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
++.++..++..+..+|+.||.|.||+|+..||+..|..||.+- |.--++.||..+|.|.||+|+|-+|+-++.
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ-------THL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ-------THLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCch-------hhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 4456788999999999999999999999999999999999987 888999999999999999999999998876
Q ss_pred hhh
Q psy6935 1565 SKE 1567 (1575)
Q Consensus 1565 ~~~ 1567 (1575)
...
T Consensus 163 kaa 165 (244)
T KOG0041|consen 163 KAA 165 (244)
T ss_pred HHh
Confidence 543
No 46
>PTZ00184 calmodulin; Provisional
Probab=98.16 E-value=1.3e-05 Score=82.59 Aligned_cols=65 Identities=29% Similarity=0.597 Sum_probs=60.5
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
..+..+|+.||.+++|+|+..+|..++..+|..+ +..++..++..+|.+++|.|+|++|+.+|..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKL-------TDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCC-------CHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 4578999999999999999999999999999888 8899999999999999999999999998864
No 47
>KOG0031|consensus
Probab=98.12 E-value=1.3e-05 Score=75.97 Aligned_cols=71 Identities=18% Similarity=0.422 Sum_probs=65.6
Q ss_pred cCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1485 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1485 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
..+.+++.. +..+|+.||.+++|+|..+.|+..|...|..+ ++++|+.|++.+-++..|.|+|..|+.++.
T Consensus 94 L~gtdpe~~--I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~-------~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 94 LNGTDPEEV--ILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF-------TDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred hcCCCHHHH--HHHHHHhcCccCCCccCHHHHHHHHHHhcccC-------CHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 356666655 89999999999999999999999999999999 999999999999999999999999999987
No 48
>KOG4240|consensus
Probab=98.11 E-value=0.0033 Score=79.38 Aligned_cols=335 Identities=13% Similarity=0.113 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhhccchhchhhHHHHHHHHHHHHHhhcccc-CCCCHHHHHHHHHHHHHHHHHHHH
Q psy6935 557 LTQKTTEKSLKLKEANKQR-TYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEE-VDSKTDNVEALIKKHEDFDKAINA 634 (1575)
Q Consensus 557 L~~~~~~r~~~L~~~~~~r-~~L~q~~~~~~f~~~~~~~l~~wL~~~E~~L~~~~-~~~~~~~~~~~l~~~~~l~~~l~~ 634 (1575)
+...+..+...++-.-..+ ..+.+|.++..+. .+..++..|+.+....|.... ++++......+...|..|......
T Consensus 249 ~le~l~~~~q~~El~~d~~s~rl~~a~~l~~l~-~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~f~d~~e~ 327 (1025)
T KOG4240|consen 249 LLESLEEEVQRLELPADVRSTRLEQASQLAKLL-EDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQFQDAQEV 327 (1025)
T ss_pred HHHhHHHHHHhhcchhhchhhHHHHHHHHHHHH-HHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhhhhhHHHH
Confidence 3333444444555555555 6778888888888 999999999999988887754 556677777777788888877665
Q ss_pred hHHH-HHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHhhHHHHHHHHHHHHhhhh
Q psy6935 635 HEEK-IGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLAT 713 (1575)
Q Consensus 635 ~~~~-~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~l~~f~~~~~el~~Wl~e~~~~~~ 713 (1575)
..-. -......+..+..+.+++...+...+..+..+|..+...+..|.+.+.. +..|+.....+..-|.+......
T Consensus 328 k~~~~q~~~~~~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa---~~~~~~t~e~v~~iLe~le~e~E 404 (1025)
T KOG4240|consen 328 KTLLSQLQVQQKAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAA---AVAFYKTSEQVEPILEDLESEYE 404 (1025)
T ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHhcccccc
Confidence 2221 2233455666677788999999999999999999999999999888886 55567666665555543221111
Q ss_pred ccCCCChhhHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHhHhccCCC----------CCHHHHHHHHHHHHHHHHHH
Q psy6935 714 EESYKDPANIQSKHQKHQAFEAE--LAANADRIQSVLAMGQNLIDKRQCV----------GSEEAVQARLASIADQWEFL 781 (1575)
Q Consensus 714 ~~~~~d~~~l~~~l~~~q~l~~e--l~~~~~~l~~l~~~g~~L~~~~~~~----------~~~~~i~~~l~~l~~~w~~L 781 (1575)
........ ......+.+. +..+....+.+...|.......+.- .-...|.-....++.+=.-.
T Consensus 405 ~~~g~al~-----~~~f~~l~a~~l~skh~~~~~~~l~~CTe~r~~ad~~~~ei~r~~i~~~~k~lk~~r~~~r~re~~~ 479 (1025)
T KOG4240|consen 405 RSGGCALL-----GAQFRSLHAALLISKHRLAKELFLKACTEARRNADVFLREIKRNRILDREKQLKLHRNLLRQRENCD 479 (1025)
T ss_pred hhhhhhhc-----hhHHHHHhhhhhhhhhhhhhhhhhhhHHHHHhcCcHHHHHHHHHhhhhHHHHHHHHHHHHhccccCc
Confidence 00000000 0001111111 1122222233333333332211100 00011111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6935 782 TQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEV-ESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 860 (1575)
Q Consensus 782 ~~~~~~r~~~L~~~~~~~~f~~~l~~l~~WL~~~-e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~ 860 (1575)
...+....+.+..+.....+...+++++.||... +-++..... ..........+.+-.|..........+..+.....
T Consensus 480 l~~~l~a~q~~d~cq~~~~~e~~~ke~e~~L~~~~ef~~~~~~s-~~~~e~~e~~~~~~~~~~~~~~~~~~~~~f~~~~~ 558 (1025)
T KOG4240|consen 480 LESWLLAKQALDKCQSYVVAEASAKEAEEFLHTEGEFKLKELTS-KSERESIELLDLFAKFKSPFKQTKTMVSLFIQLQD 558 (1025)
T ss_pred HHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHhCcchhhhhcch-hhhhhhccchhhhhhcCCcchhHHHHHHHHHHHhh
Confidence 2222333344444455667889999999999987 444433222 33333333444555566666667778888888888
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 861 SLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEA 901 (1575)
Q Consensus 861 ~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~ 901 (1575)
.|...++.-+..|+..+..+...|....-....|+......
T Consensus 559 ~f~~~~~~h~~~Iq~~v~~~e~~~~~~~~~~~~~~~sk~~~ 599 (1025)
T KOG4240|consen 559 NFTELAHRHGREIQKCVERVEKEYRSFSRRMGKRCGSKEKA 599 (1025)
T ss_pred hhhhhhhhhhhhHHhhcccchhccCCCCcccchhhhhHHHH
Confidence 88887777778888888888888888887777666655433
No 49
>KOG0044|consensus
Probab=98.04 E-value=1e-05 Score=83.41 Aligned_cols=102 Identities=21% Similarity=0.339 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhccchHHhHhhhh-cCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHc----CCCCCCCCCCCCh
Q psy6935 1462 WDQLDQLGMRMQHNLEQQIQARN-QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL----GYDLPMVEEGQPD 1536 (1575)
Q Consensus 1462 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~----g~~~~~~~~~~~~ 1536 (1575)
|+.+...-.+.+.+.++.+...- +.|-.++. ++.+|+.||.||+|+|+..|+-.++.++ |..-.+..++.+.
T Consensus 70 F~~fD~~~dg~i~F~Efi~als~~~rGt~eek---l~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~ 146 (193)
T KOG0044|consen 70 FRTFDKNKDGTIDFLEFICALSLTSRGTLEEK---LKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPE 146 (193)
T ss_pred HHHhcccCCCCcCHHHHHHHHHHHcCCcHHHH---hhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHH
Confidence 44455555566777776555533 34443433 4677999999999999999998888764 4311112233345
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1537 PEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1537 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
.-+..++..+|.|+||.||++||+..+..-
T Consensus 147 ~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 147 ERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred HHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 668999999999999999999999988653
No 50
>KOG0034|consensus
Probab=98.03 E-value=8.5e-06 Score=84.14 Aligned_cols=73 Identities=22% Similarity=0.446 Sum_probs=57.4
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
..++-+|+.||.+++|+|+.++++.++..+ |....+ .+++-..-++.++..+|.++||.|+|+||+.++...+
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 457889999999999999999999999886 544421 1111233456677889999999999999999998653
No 51
>KOG0036|consensus
Probab=98.03 E-value=4.8e-06 Score=92.05 Aligned_cols=104 Identities=16% Similarity=0.283 Sum_probs=87.5
Q ss_pred HHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHH
Q psy6935 1464 QLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAIL 1543 (1575)
Q Consensus 1464 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~ 1543 (1575)
........|..+.++.+...+++.+-.+...++...|..+|.++||.|+..|+...|+.+|.++ +++++.+++
T Consensus 52 ~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l-------~de~~~k~~ 124 (463)
T KOG0036|consen 52 AAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL-------SDEKAAKFF 124 (463)
T ss_pred HHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc-------CHHHHHHHH
Confidence 3344555666666666666666666566667889999999999999999999999999999999 999999999
Q ss_pred HHhCCCCCCcccHHHHHHHHhhhhhhhcCCC
Q psy6935 1544 DLVDPNRDGHVSLQEYMAFMISKETRQNSSL 1574 (1575)
Q Consensus 1544 ~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~ 1574 (1575)
..+|++|++.|+|+||..++..++..++.++
T Consensus 125 e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di 155 (463)
T KOG0036|consen 125 EHMDKDGKATIDLEEWRDHLLLYPESDLEDI 155 (463)
T ss_pred HHhccCCCeeeccHHHHhhhhcCChhHHHHH
Confidence 9999999999999999999998887776554
No 52
>KOG4240|consensus
Probab=98.00 E-value=0.0018 Score=81.63 Aligned_cols=343 Identities=15% Similarity=0.143 Sum_probs=214.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CCCCCHHHHHHHHHHHHH
Q psy6935 868 FDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVGSD-DYGRDLTGVQNLKKKHKR 946 (1575)
Q Consensus 868 ~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~~~~f~~~~~~~~~Wl~e~~~~~~~~-~~~~~~~~~~~~l~k~~~ 946 (1575)
+..+.|+..+..+..+-..+......+..++..+..+.....+..++..|+.+....+... ..+.+......+...|..
T Consensus 241 ~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~ 320 (1025)
T KOG4240|consen 241 DMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQLAKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQ 320 (1025)
T ss_pred HHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhh
Confidence 4566788889999999999999999999999999999999999999999999877665543 345555656666777777
Q ss_pred HHHHHhh-chhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 947 LEAELAS-HQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWIS 1025 (1575)
Q Consensus 947 l~~el~~-~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~ 1025 (1575)
|..-... .-.....+..++..+....++....+..++..++..|..+...+..|...++.+.. |+.....+..-|+
T Consensus 321 f~d~~e~k~~~~q~~~~~~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~~---~~~t~e~v~~iLe 397 (1025)
T KOG4240|consen 321 FQDAQEVKTLLSQLQVQQKAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAVA---FYKTSEQVEPILE 397 (1025)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHH
Confidence 7776555 22233445566667777888889999999999999999999999999998876554 5555556666666
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHhhhHhHhccCCC------------chhHHHHHHH
Q psy6935 1026 EKQQLLSVEDYGDTMAAVQGLLKKHDAFETD--FSVHRDRCADICSAGNKLIEAKNHH------------ADSITQRCQQ 1091 (1575)
Q Consensus 1026 e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~e--l~~~~~~v~~l~~~~~~L~~~~~~~------------~~~i~~~l~~ 1091 (1575)
+.+....+. .|.... ...+..+... +..+...+..+...|....-.++.. ...|+.....
T Consensus 398 ~le~e~E~~-~g~al~-----~~~f~~l~a~~l~skh~~~~~~~l~~CTe~r~~ad~~~~ei~r~~i~~~~k~lk~~r~~ 471 (1025)
T KOG4240|consen 398 DLESEYERS-GGCALL-----GAQFRSLHAALLISKHRLAKELFLKACTEARRNADVFLREIKRNRILDREKQLKLHRNL 471 (1025)
T ss_pred hcccccchh-hhhhhc-----hhHHHHHhhhhhhhhhhhhhhhhhhhHHHHHhcCcHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 554443321 111110 0111111100 1111112222222222221111111 1122222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhccccH
Q psy6935 1092 LQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGI 1171 (1575)
Q Consensus 1092 L~~~w~~L~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l~~~~~~f~~el~~~~~~~~ 1171 (1575)
+..+=......+....+.+..+.....|...+++...||...-.............+.......+..|........ ..+
T Consensus 472 ~r~re~~~l~~~l~a~q~~d~cq~~~~~e~~~ke~e~~L~~~~ef~~~~~~s~~~~e~~e~~~~~~~~~~~~~~~~-~~~ 550 (1025)
T KOG4240|consen 472 LRQRENCDLESWLLAKQALDKCQSYVVAEASAKEAEEFLHTEGEFKLKELTSKSERESIELLDLFAKFKSPFKQTK-TMV 550 (1025)
T ss_pred HhccccCcHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHhCcchhhhhcchhhhhhhccchhhhhhcCCcchhHH-HHH
Confidence 3333333334444555556656666678888999999998865433322112333333344555666665555544 567
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1172 QNITTLKDQLVASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRM 1220 (1575)
Q Consensus 1172 ~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~L~~a 1220 (1575)
..+....+.+....|..+..|+..+..+...+....-....|.-....+
T Consensus 551 ~~f~~~~~~f~~~~~~h~~~Iq~~v~~~e~~~~~~~~~~~~~~~sk~~~ 599 (1025)
T KOG4240|consen 551 SLFIQLQDNFTELAHRHGREIQKCVERVEKEYRSFSRRMGKRCGSKEKA 599 (1025)
T ss_pred HHHHHHhhhhhhhhhhhhhhHHhhcccchhccCCCCcccchhhhhHHHH
Confidence 7777788888888887788888888888888888777777666555433
No 53
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.91 E-value=0.36 Score=67.91 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=10.4
Q ss_pred cccCCChhHHHHHHHHHHH
Q psy6935 490 EESYKDPANIQSKHQKHQA 508 (1575)
Q Consensus 490 ~~~~~d~~~~~~~l~~~~~ 508 (1575)
.+.+.+...+...+..+..
T Consensus 294 ~~l~~s~eEL~~ll~~f~~ 312 (1311)
T TIGR00606 294 KVFQGTDEQLNDLYHNHQR 312 (1311)
T ss_pred ccCCCCHHHHHHHHHHHHH
Confidence 3455566666655555444
No 54
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.84 E-value=1.5e-05 Score=54.42 Aligned_cols=29 Identities=41% Similarity=0.763 Sum_probs=26.8
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
+++.+|+.||+||||+|+.+||..+|++|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47899999999999999999999999875
No 55
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=0.47 Score=66.75 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC
Q psy6935 1151 TLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNH 1186 (1575)
Q Consensus 1151 ~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~ 1186 (1575)
.+-..+.++...|..+|..++..|+.+-..|-...-
T Consensus 1119 d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~ 1154 (1311)
T TIGR00606 1119 DLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTY 1154 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666677777776777777777777766443
No 56
>KOG0994|consensus
Probab=97.81 E-value=0.23 Score=62.59 Aligned_cols=189 Identities=14% Similarity=0.073 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHh-hh--hhHhHHHHhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHH
Q psy6935 332 NLQAKIQKHQAFEAEVAAHSNAIVV-LD--NTGNDFYRDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAI 408 (1575)
Q Consensus 332 ~L~~~w~~L~~~~~~r~~~L~~~l~-~~--~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~~l 408 (1575)
.-=..|..+......|..+|...-. ++ -.+..|......+..-|.+....|.. ...+.++++.+-...+.+.+.|
T Consensus 1164 ~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~--~svs~~~i~~l~~~~~~lr~~l 1241 (1758)
T KOG0994|consen 1164 ECFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSA--PSVSAEDIAQLASATESLRRQL 1241 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHHHHHHH
Confidence 4556788877777777766655420 00 23345777788888778777777765 3456677888788888888888
Q ss_pred HHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHHHHHHH
Q psy6935 409 NAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE---SQTLQQFSRDADEMENWIAEKL 485 (1575)
Q Consensus 409 ~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~---~~~~~~f~~~~~el~~Wl~~~~ 485 (1575)
......+..+......+..+.+. -...++.|......|.....+..++++. +.-.-.|...-.... -..+++
T Consensus 1242 ~~~~e~L~~~E~~Lsdi~~~~~~----a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~-~s~ea~ 1316 (1758)
T KOG0994|consen 1242 QALTEDLPQEEETLSDITNSLPL----AGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYE-QSAEAE 1316 (1758)
T ss_pred HHHHhhhhhhhhhhhhhhhccch----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHH-HHHHHH
Confidence 88888877777666666554432 2344666777777777766666666554 222222322211111 122233
Q ss_pred HHhc-----cccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Q psy6935 486 QLAT-----EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMG 527 (1575)
Q Consensus 486 ~~l~-----~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g 527 (1575)
...+ .....|-..++.++.+.+.-......+...+..+...-
T Consensus 1317 ~r~~~s~~~l~s~~~~sR~e~l~~k~k~~f~~~~~n~~~L~el~~~l 1363 (1758)
T KOG0994|consen 1317 RRVDASSRELASLVDQSRVEELLVKQKGDFGGLAENSRLLVELRAEL 1363 (1758)
T ss_pred HhhhhhhhcccchhhhhHHHHHHHHhhhcccccccccHHHHHHHHHh
Confidence 3322 22333444677777776655445666666666655443
No 57
>PLN02964 phosphatidylserine decarboxylase
Probab=97.74 E-value=0.00011 Score=90.35 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1487 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
..++++...+..+|+.||.|++|.|+..||..+|..+|... +++++..++..+|+|++|.|+++||..+|..
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~-------seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLV-------AANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCC-------CHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 35666666789999999999999999999999999998766 8889999999999999999999999999876
No 58
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.69 E-value=0.00019 Score=63.79 Aligned_cols=73 Identities=18% Similarity=0.373 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcccCCCCCCcccHHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1490 EDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1490 ~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+..+.-+..+|..|- .+.|.++..||+..|.+ ++-.+.. ...+..+++++..+|.|+||.|+|.||+.++...
T Consensus 4 E~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~---~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 4 EHSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKN---QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcC---CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 344566788999887 45679999999999864 4422211 1157789999999999999999999999998764
No 59
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.67 E-value=3.6e-05 Score=54.07 Aligned_cols=30 Identities=40% Similarity=0.686 Sum_probs=27.2
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHH-HcC
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLR-ALG 1524 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~-~~g 1524 (1575)
+++.+|+.||+|++|+|+..||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999999 787
No 60
>KOG0044|consensus
Probab=97.66 E-value=7.8e-05 Score=77.01 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=77.9
Q ss_pred CCcchhhhhhhhHHHHHHHHHh-hccchHHhHhhhhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCC
Q psy6935 1450 YTEHSTVGLAQQWDQLDQLGMR-MQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLP 1528 (1575)
Q Consensus 1450 ~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~ 1528 (1575)
.|.++..+++..|..+...+.. .....++.......-. ....-....-+|+.||+|++|.|+..||..++.-+----
T Consensus 20 ~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp-~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt- 97 (193)
T KOG0044|consen 20 QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFP-DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGT- 97 (193)
T ss_pred hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCC-CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCc-
Confidence 5677888888888888887733 3333344443333221 122233467899999999999999999988886542221
Q ss_pred CCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1529 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1529 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
.++-+.-.+..+|.||+|+|+++|++.++...
T Consensus 98 ------~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 98 ------LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred ------HHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 45667788999999999999999999988653
No 61
>KOG0994|consensus
Probab=97.60 E-value=0.46 Score=60.06 Aligned_cols=122 Identities=12% Similarity=0.235 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q psy6935 772 ASIADQWEFLTQKTTEKSLKLKEANK-------QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEAD 844 (1575)
Q Consensus 772 ~~l~~~w~~L~~~~~~r~~~L~~~~~-------~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~e 844 (1575)
.+-...|+.+...+..|..+|....+ ...|...+.+++.-|.++...|....++ ...+.++-.....|.++
T Consensus 1163 h~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs--~~~i~~l~~~~~~lr~~ 1240 (1758)
T KOG0994|consen 1163 HECFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVS--AEDIAQLASATESLRRQ 1240 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHHHHH
Confidence 45667899888888888888755522 3469999999999999999999775543 56677777777788888
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 845 IQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLN 899 (1575)
Q Consensus 845 i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le 899 (1575)
|......+..+......+..+.+. -...+..|...+..|.....+-...++
T Consensus 1241 l~~~~e~L~~~E~~Lsdi~~~~~~----a~~~LesLq~~~~~l~~~~keL~e~~~ 1291 (1758)
T KOG0994|consen 1241 LQALTEDLPQEEETLSDITNSLPL----AGKDLESLQREFNGLLTTYKELREQLE 1291 (1758)
T ss_pred HHHHHhhhhhhhhhhhhhhhccch----hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777776666655544433221 123344445555555544444444444
No 62
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.58 E-value=0.00015 Score=67.16 Aligned_cols=70 Identities=20% Similarity=0.437 Sum_probs=60.4
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1486 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
+.+++++...+...|...|. ++|+|+.......|...|. +...+..|..-.|.+++|+++++||+-.|.-
T Consensus 2 ~~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L---------~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 2 PKLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGL---------PRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp ---SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTS---------SHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCC---------CHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 45788899999999999996 6899999999999998887 6688999999999999999999999998754
No 63
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.54 E-value=9.4e-05 Score=50.50 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1538 EFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1538 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
++..+++.+|.||||+|+|+||+.+|..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999999864
No 64
>PLN02964 phosphatidylserine decarboxylase
Probab=97.54 E-value=0.00014 Score=89.43 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcC-CCCCCCCCCCChHH---HHHHHHHhCCCCCCcccHHHHHH
Q psy6935 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG-YDLPMVEEGQPDPE---FEAILDLVDPNRDGHVSLQEYMA 1561 (1575)
Q Consensus 1486 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g-~~~~~~~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~ 1561 (1575)
..++..++.+++.+|..||+|++|+| ++.+++++| ..+ ++.+ +..++..+|.|++|.|+|+||+.
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~p-------te~e~~fi~~mf~~~D~DgdG~IdfdEFl~ 203 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDP-------VETERSFARRILAIVDYDEDGQLSFSEFSD 203 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCC-------CHHHHHHHHHHHHHhCCCCCCeEcHHHHHH
Confidence 46788899999999999999999997 999999999 577 7666 89999999999999999999999
Q ss_pred HHhh
Q psy6935 1562 FMIS 1565 (1575)
Q Consensus 1562 ~~~~ 1565 (1575)
+|..
T Consensus 204 lL~~ 207 (644)
T PLN02964 204 LIKA 207 (644)
T ss_pred HHHH
Confidence 9975
No 65
>KOG0036|consensus
Probab=97.47 E-value=0.00031 Score=78.15 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYD-LPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1487 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
..+++.-.+++..|+.||.+++|.|+..++.+.+.+++.+ + +..-...++..+|.|.||+++|.+|.+|+..
T Consensus 7 ~~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~-------~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 7 ETDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKP-------NYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred CCcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCC-------chHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 3456666789999999999999999999999999999887 4 5566788899999999999999999999987
Q ss_pred hhh
Q psy6935 1566 KET 1568 (1575)
Q Consensus 1566 ~~~ 1568 (1575)
...
T Consensus 80 ~E~ 82 (463)
T KOG0036|consen 80 KEL 82 (463)
T ss_pred hHH
Confidence 654
No 66
>KOG0038|consensus
Probab=97.30 E-value=0.00042 Score=64.86 Aligned_cols=64 Identities=23% Similarity=0.435 Sum_probs=53.5
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHHcCC-CCCCCCCCCChHHH----HHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRALGY-DLPMVEEGQPDPEF----EAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~-~~~~~~~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
..=+|++||-|++|+|...++..++.++.- .+ +++++ +++|...|.||||+++|.+|-.++...
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eL-------s~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDEL-------SDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccC-------CHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 355899999999999999999999999832 23 56665 567888899999999999999988653
No 67
>KOG0377|consensus
Probab=97.28 E-value=0.00047 Score=76.62 Aligned_cols=63 Identities=25% Similarity=0.510 Sum_probs=55.6
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHcC----CCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALG----YDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g----~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
.+..+|+.+|.|++|.||.+||..+..-++ ..+ +++++.++...+|.|+||.|++.||+..+.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i-------~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAI-------SDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCc-------CHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 468899999999999999999999887653 344 789999999999999999999999998764
No 68
>KOG0046|consensus
Probab=97.24 E-value=0.00062 Score=77.82 Aligned_cols=80 Identities=23% Similarity=0.433 Sum_probs=68.9
Q ss_pred cCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1485 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1485 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
.+.+|.+++..+++.|...| |++|+|+..++..++...+..... ...++++.++...++|.+|.|+|++|+..+.
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~----~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGY----FVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccc----hhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 56789999999999999999 999999999999999988664410 0478899999999999999999999999887
Q ss_pred hhhhh
Q psy6935 1565 SKETR 1569 (1575)
Q Consensus 1565 ~~~~~ 1569 (1575)
...+.
T Consensus 85 ~l~s~ 89 (627)
T KOG0046|consen 85 NLKSK 89 (627)
T ss_pred hhhhh
Confidence 65443
No 69
>KOG0161|consensus
Probab=97.15 E-value=2.7 Score=58.98 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHhhhh
Q psy6935 1084 SITQRCQQLQLKLDNLMALATKRKTKLMDNS-------AY-LQFMWKADVVESWIADKET 1135 (1575)
Q Consensus 1084 ~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~-------~~-~~f~~~~~~l~~Wl~~~e~ 1135 (1575)
.+..+-......|..+......-...|+.-. .. ..+..++.++..+++.+..
T Consensus 1566 ~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank 1625 (1930)
T KOG0161|consen 1566 RLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANK 1625 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 4445555666666666665555444444321 11 1344456666666665544
No 70
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.95 E-value=2.1 Score=54.37 Aligned_cols=453 Identities=14% Similarity=0.179 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhHhhH---HHHHHHhh---HHHHHHHHHHHHhhhhccCCCChhhHHHHHHHHHH
Q psy6935 660 IDDKRKQVLDRWRLL-KEALIEKRSRLGESQ---TLQQFSRD---ADEMENWIAEKLQLATEESYKDPANIQSKHQKHQA 732 (1575)
Q Consensus 660 i~~~~~~l~~r~~~l-~~~~~~r~~~Le~~~---~l~~f~~~---~~el~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~ 732 (1575)
.....+.....|+.+ ...+.+....|.++- .-.+|... +..+..-|...+.... .-...+...+..++.
T Consensus 62 s~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~----~i~~~l~~l~~~e~~ 137 (569)
T PRK04778 62 SEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIE----QILEELQELLESEEK 137 (569)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 345677777888773 444444444444432 22345443 2222222322222111 011233444444444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 733 FEAELAANADRIQSVLAMGQNLIDK-RQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFW 811 (1575)
Q Consensus 733 l~~el~~~~~~l~~l~~~g~~L~~~-~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~l~~l~~W 811 (1575)
-..++...+..+..+.+ .|+.. ...++..+.|..+|..+...+........ -+.-++..--.......+..+..-
T Consensus 138 nr~~v~~l~~~y~~~rk---~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~-~Gd~~~A~e~l~~l~~~~~~l~~~ 213 (569)
T PRK04778 138 NREEVEQLKDLYRELRK---SLLANRFSFGPALDELEKQLENLEEEFSQFVELTE-SGDYVEAREILDQLEEELAALEQI 213 (569)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544443 33433 23345678899999999988888766554 222222222223333333333333
Q ss_pred HHHHHHhhcCCC--CCCCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHH
Q psy6935 812 LGEVESLLTSED--SGKDLASVQNLIKK---------HQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSI 880 (1575)
Q Consensus 812 L~~~e~~L~~~~--~~~d~~~~~~~l~~---------~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l 880 (1575)
|..+-..+.... +|.-+..+..-.++ |-.+..+|...+..+.........+ +...+...+..+
T Consensus 214 ~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l------~l~~~~~~~~~i 287 (569)
T PRK04778 214 MEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL------DLDEAEEKNEEI 287 (569)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc------ChHHHHHHHHHH
Confidence 333322222110 11111111111111 1123333333333333332222221 333444444444
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-CCCC-CCCHHHHHHHHHHHHHHHHHHhhc
Q psy6935 881 NERYERIK----NLAAHRQARLNEANTLHQFFRDIADEESWIKEKKLLVG-SDDY-GRDLTGVQNLKKKHKRLEAELASH 954 (1575)
Q Consensus 881 ~~r~~~L~----~~~~~R~~~Le~~~~~~~f~~~~~~~~~Wl~e~~~~~~-~~~~-~~~~~~~~~~l~k~~~l~~el~~~ 954 (1575)
..+.+.|. .-...+...-...-.+..+...+.....-+..-...+. +-.+ ..+... .+.+..++...
T Consensus 288 ~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~-------~~~lekeL~~L 360 (569)
T PRK04778 288 QERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELES-------VRQLEKQLESL 360 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHH-------HHHHHHHHHHH
Confidence 44443333 33333333322222344444443333333332222211 1111 122333 33344444444
Q ss_pred hhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccC
Q psy6935 955 QPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTY-QHFLAKVEEEEAWISEKQQLLSV 1033 (1575)
Q Consensus 955 ~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~-~~f~~~~~el~~Wl~e~e~~l~~ 1033 (1575)
...+..+..... ........++..+..+......+......-...+.....- ......+..+..=|.+....+..
T Consensus 361 e~~~~~~~~~i~----~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k 436 (569)
T PRK04778 361 EKQYDEITERIA----EQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK 436 (569)
T ss_pred HHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 434443322211 1122355666666666666666666555555555443321 23333344444445555555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q psy6935 1034 EDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKT---KL 1110 (1575)
Q Consensus 1034 ~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~---~L 1110 (1575)
..+|+-+......+. .... .+..+ ...|-. +|-+...|...+..+..++..|.....+-.. .+
T Consensus 437 ~~lpgip~~y~~~~~---~~~~-------~i~~l---~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~l 502 (569)
T PRK04778 437 SNLPGLPEDYLEMFF---EVSD-------EIEAL---AEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLT 502 (569)
T ss_pred cCCCCCcHHHHHHHH---HHHH-------HHHHH---HHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443322222 2222 22222 223333 5666677877888888888877766554332 33
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhhhcccccCCCHHHHHH
Q psy6935 1111 MDNSAYL-QFMWKADVVESWIADKETHVKSEEYGRDLSTVQT 1151 (1575)
Q Consensus 1111 e~~~~~~-~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~ 1151 (1575)
+...... +|......+..=+..++......+|...++.+..
T Consensus 503 E~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~ 544 (569)
T PRK04778 503 EQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIAT 544 (569)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3344443 5655666666666666666654455554444433
No 71
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.94 E-value=2 Score=54.15 Aligned_cols=123 Identities=11% Similarity=0.116 Sum_probs=72.9
Q ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhH------hHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHH
Q psy6935 434 KPIDDKRKQVLDRWRLLK-EALIEKRSRLGESQ------TLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKH 506 (1575)
Q Consensus 434 ~~i~~~l~~L~~rw~~l~-~~~~~r~~~L~~~~------~~~~f~~~~~el~~Wl~~~~~~l~~~~~~d~~~~~~~l~~~ 506 (1575)
.............|+.+. ..+.+-...|.++. .+.+....+..+..-|...+..+. .=...+..++...
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~----~i~~~l~~L~~~e 131 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIK----EILDELDELLESE 131 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 345667888889999988 56677777776542 222233444455555555444443 1123455555555
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 507 QAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTT 562 (1575)
Q Consensus 507 ~~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~ 562 (1575)
..-..++......+..+.+..-.--..-+++.+. |..++..+...+..+...+.
T Consensus 132 ~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~--Le~~L~~ie~~F~~f~~lt~ 185 (560)
T PF06160_consen 132 EKNREEIEELKEKYRELRKELLAHSFSYGPAIEE--LEKQLENIEEEFSEFEELTE 185 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 6666667766677766655433322222334444 89999998888887766554
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.89 E-value=4.1 Score=56.83 Aligned_cols=342 Identities=13% Similarity=0.179 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q psy6935 784 KTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEA---DIQAHDDRIKDMNGQAD 860 (1575)
Q Consensus 784 ~~~~r~~~L~~~~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~---ei~~~~~~v~~l~~~~~ 860 (1575)
.+.+-..++..+..+..|..... .-|..+|..+... ..|+.....+...++..+. .+...-..+..|.....
T Consensus 895 ~~~~~~~~~~~~~~a~~y~~~~~---~~L~qLE~~l~~L--~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 969 (1486)
T PRK04863 895 RVEEIREQLDEAEEAKRFVQQHG---NALAQLEPIVSVL--QSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRA 969 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555533333 3344444444332 2244444444444444433 33333344444444443
Q ss_pred Hh--------hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q psy6935 861 SL--------IDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANT-LHQFFRDIADEESWIKEKKLLVGSDDYG 931 (1575)
Q Consensus 861 ~L--------~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~-~~~f~~~~~~~~~Wl~e~~~~~~~~~~~ 931 (1575)
.| +..+....+.|...+..+...+..+...+..-...+..... +..+...+.....=+.+....+..-.++
T Consensus 970 ~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~ 1049 (1486)
T PRK04863 970 HFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVP 1049 (1486)
T ss_pred hccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33 22222345678888888888888888888777777776653 4444444555555555554444443333
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhch--------------hhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy6935 932 RDLTGVQNLKKKHKRLEAELASHQ--------------PAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLA 997 (1575)
Q Consensus 932 ~~~~~~~~~l~k~~~l~~el~~~~--------------~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~ 997 (1575)
.+...-......-..+...+..+. ..++.+......+- .....+...+..++..|..|...+
T Consensus 1050 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~----~e~~~~re~I~~aK~~W~~v~~~~ 1125 (1486)
T PRK04863 1050 ADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLE----RDYHEMREQVVNAKAGWCAVLRLV 1125 (1486)
T ss_pred CCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222222111133444433333 33333333322221 134567778888888888887776
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHhhh
Q psy6935 998 ANR--GQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKK---HDAFETDFSVHRDRCADICSAGN 1072 (1575)
Q Consensus 998 ~~r--~~~L~~~~~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~---~~~l~~el~~~~~~v~~l~~~~~ 1072 (1575)
..- ...|.... --|+ ...++-+-....-..|. .-++++ +.+...++- -..-..-+.=|-..+..|....+
T Consensus 1126 ~~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~l~-~a~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~r~r~r 1200 (1486)
T PRK04863 1126 KDNGVERRLHRRE--LAYL-SADELRSMSDKALGALR-LAVADN-EHLRDVLRLSEDPKRPERKVQFYIAVYQHLRERIR 1200 (1486)
T ss_pred HhcChhhhhhHhh--hhcc-CchhhHHHHHHHHHHHH-HhccCc-HHHHHHHhhccCCCchhHHHhHHHHHHHHHHHHHh
Confidence 532 12221111 0111 11222222222222221 111111 111111111 00011122223334445555443
Q ss_pred H-hHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHhhhhhhcccccCC
Q psy6935 1073 K-LIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNS-AY-LQFMWKADVVESWIADKETHVKSEEYGR 1144 (1575)
Q Consensus 1073 ~-L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~-~~-~~f~~~~~~l~~Wl~~~e~~l~~~~~~~ 1144 (1575)
+ ++... .+..-...|......+......+...+-... .+ ..+...+.....|+..+...|...+++.
T Consensus 1201 ~di~~~~-----~p~et~e~Le~ei~rl~~~L~e~Er~L~~s~eEVa~~l~~rI~~a~~~V~~mN~~L~~i~f~~ 1270 (1486)
T PRK04863 1201 QDIIRTD-----DPVEAIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFGQ 1270 (1486)
T ss_pred hhhhhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2 33222 3345566777777777777777776654222 22 3677888899999999999988766644
No 73
>KOG4065|consensus
Probab=96.72 E-value=0.0022 Score=57.49 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHH------cCCCCCCCCCCCChHHHHHHHH----HhCCCCCCccc
Q psy6935 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA------LGYDLPMVEEGQPDPEFEAILD----LVDPNRDGHVS 1555 (1575)
Q Consensus 1486 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~------~g~~~~~~~~~~~~~~~~~~~~----~~d~~~~g~i~ 1555 (1575)
..+|++++. --.|+..|-|++|+|+.-|+..++.- -|..+.+.. ++.++..||+ .-|.|+||.|+
T Consensus 61 a~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~---sE~Ele~~iD~vL~DdDfN~DG~ID 135 (144)
T KOG4065|consen 61 AKMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLS---SEAELERLIDAVLDDDDFNGDGVID 135 (144)
T ss_pred hhCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCC---CHHHHHHHHHHHhcccccCCCceee
Confidence 346777763 45788889999999999999998863 244322211 4566666555 45899999999
Q ss_pred HHHHHHH
Q psy6935 1556 LQEYMAF 1562 (1575)
Q Consensus 1556 ~~ef~~~ 1562 (1575)
|-||++-
T Consensus 136 YgEflK~ 142 (144)
T KOG4065|consen 136 YGEFLKR 142 (144)
T ss_pred HHHHHhh
Confidence 9999863
No 74
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.69 E-value=0.0013 Score=43.16 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=22.2
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHH
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCL 1520 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l 1520 (1575)
++.+|+.+|.|+||.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4679999999999999999998753
No 75
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.62 E-value=0.005 Score=72.12 Aligned_cols=52 Identities=25% Similarity=0.423 Sum_probs=46.3
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
..+..+|+.||+|++|.|+..||.. +..+|..+|.|+||.|+|+||..+|..
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~--------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG--------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH--------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 5579999999999999999999931 367899999999999999999998864
No 76
>PRK02224 chromosome segregation protein; Provisional
Probab=96.61 E-value=5.4 Score=54.35 Aligned_cols=17 Identities=29% Similarity=0.261 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6935 978 EIEQRLKLLNQAWSELK 994 (1575)
Q Consensus 978 ~i~~~l~~L~~~w~~L~ 994 (1575)
.+...+..++.++..+.
T Consensus 624 ~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 624 ERRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666665554
No 77
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.58 E-value=3.7 Score=52.15 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHH
Q psy6935 870 ASSIQEKRQSINERYERIKNLAAHRQARLNEANT-LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLE 948 (1575)
Q Consensus 870 ~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~-~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~ 948 (1575)
...+...+..+..+...+...-..-...+..... -......+..+..=+.+....+....+|+-|...... +....
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~---~~~~~ 454 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEM---FFEVS 454 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH---HHHHH
Confidence 4556666666666555555554444444433221 1111122222222233333333344445544433322 22222
Q ss_pred HHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHH
Q psy6935 949 AELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRG---QKLDESLTY-QHFLAKVEEEEAWI 1024 (1575)
Q Consensus 949 ~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~---~~L~~~~~~-~~f~~~~~el~~Wl 1024 (1575)
.++ ......|-. ++-.-..|...+..+..+...|......-. ..++..+++ .+|.....++..=+
T Consensus 455 ~~i----------~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f 523 (569)
T PRK04778 455 DEI----------EALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEAL 523 (569)
T ss_pred HHH----------HHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 222 222333433 555777788888888888888877766543 333444433 45555556666666
Q ss_pred HHHHhhccCCCCCCCHHHHHHHH
Q psy6935 1025 SEKQQLLSVEDYGDTMAAVQGLL 1047 (1575)
Q Consensus 1025 ~e~e~~l~~~~~~~d~~~~~~~l 1047 (1575)
.+++......+|...++.+...+
T Consensus 524 ~~Ae~lF~~~~Y~~al~~~~~al 546 (569)
T PRK04778 524 NEAERLFREYDYKAALEIIATAL 546 (569)
T ss_pred HHHHHHHHhCChHHHHHHHHHHH
Confidence 66665554455555554444333
No 78
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.44 E-value=0.0075 Score=46.62 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1510 KLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1510 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
+++..|++..|+.+++.+ ++.-+..+++..|.+++|+++.+||..|+..
T Consensus 1 kmsf~Evk~lLk~~NI~~-------~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEM-------DDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCc-------CHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 478899999999999999 8888999999999999999999999999853
No 79
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.44 E-value=0.0036 Score=41.13 Aligned_cols=25 Identities=20% Similarity=0.549 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1539 FEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1539 ~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
++.++..+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 3578899999999999999999875
No 80
>KOG0037|consensus
Probab=96.39 E-value=0.0081 Score=61.85 Aligned_cols=67 Identities=16% Similarity=0.351 Sum_probs=58.7
Q ss_pred HHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1493 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1493 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
...+...|...|+|++|+|+.+|++.+|...+.... +.+.+.-||..+|.+++|.|+|.||..+...
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~F------s~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~ 122 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPF------SIETCRLMISMFDRDNSGTIGFKEFKALWKY 122 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCC------CHHHHHHHHHHhcCCCCCccCHHHHHHHHHH
Confidence 456799999999999999999999999987766543 7788999999999999999999999987654
No 81
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.31 E-value=9.1 Score=53.62 Aligned_cols=159 Identities=10% Similarity=0.121 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh----------
Q psy6935 1002 QKLDESLTYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAG---------- 1071 (1575)
Q Consensus 1002 ~~L~~~~~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~---------- 1071 (1575)
..+..+.....|......-..-|...-..|. .|+.....+..+++............+..|....
T Consensus 901 ~~~~~~~~a~~y~~~~~~~L~qLE~~l~~L~-----~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~ 975 (1486)
T PRK04863 901 EQLDEAEEAKRFVQQHGNALAQLEPIVSVLQ-----SDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYED 975 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3344444444554443333333333333342 2344445555555555554444444444433322
Q ss_pred -hHhHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcccccCCCHHHH
Q psy6935 1072 -NKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAY-LQFMWKADVVESWIADKETHVKSEEYGRDLSTV 1149 (1575)
Q Consensus 1072 -~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~~-~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~ 1149 (1575)
..++..+..-.+.|...+..+...+..+......-...+.+.... ..+...+.....-+.+.+..+..-.++.|...-
T Consensus 976 ~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~ 1055 (1486)
T PRK04863 976 AAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAE 1055 (1486)
T ss_pred HHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHH
Confidence 222232333345777888888888888887777777777666544 356666666777777777777654444443322
Q ss_pred HHHHHHHHHHHHhhhh
Q psy6935 1150 QTLLTKQETFDAGLHA 1165 (1575)
Q Consensus 1150 ~~l~~~~~~f~~el~~ 1165 (1575)
......-+.+...+..
T Consensus 1056 ~~~~~~~~~l~~~l~~ 1071 (1486)
T PRK04863 1056 ERARARRDELHARLSA 1071 (1486)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 2222222445444444
No 82
>PF13514 AAA_27: AAA domain
Probab=96.21 E-value=9.7 Score=52.99 Aligned_cols=316 Identities=12% Similarity=0.157 Sum_probs=145.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhHH
Q psy6935 614 KTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEK---RSRLGESQT 690 (1575)
Q Consensus 614 ~~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r---~~~Le~~~~ 690 (1575)
..+.+...++.++.+...+................ +.....++..+....... ...++....
T Consensus 148 ~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~---------------~~~~~~~~~~l~~~~~~l~~~~~~ler~~~ 212 (1111)
T PF13514_consen 148 RKPEINQALKELKELERELREAEVRAAEYQELQQA---------------LEEAEEELEELRAELKELRAELRRLERLRR 212 (1111)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888888888887776665555544333 333334444443333332 223333334
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHH
Q psy6935 691 LQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQAR 770 (1575)
Q Consensus 691 l~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~ 770 (1575)
...++.....+...+....... ..+......+.....+...+..++......+..+...-..+.. ++..-.....
T Consensus 213 ~~p~~~~~~~l~~~l~~l~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~----~~~ll~~~~~ 287 (1111)
T PF13514_consen 213 AWPLLAELQQLEAELAELGEVP-DFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPV----DEELLAHAAE 287 (1111)
T ss_pred HhHHHHHHHHHHHHHHhcCCcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CHHHHhhHHH
Confidence 4444555555554444321111 1111233455555566666777777777777666665555422 1111123333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------CC-CCCCHHHHHHHHHHHHH
Q psy6935 771 LASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTS---------ED-SGKDLASVQNLIKKHQL 840 (1575)
Q Consensus 771 l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~l~~l~~WL~~~e~~L~~---------~~-~~~d~~~~~~~l~~~~~ 840 (1575)
|..|............ ........+..+...+......|.. .. .......+..++..+..
T Consensus 288 I~~L~~~~~~~~~~~~----------dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 357 (1111)
T PF13514_consen 288 IEALEEQRGEYRKARQ----------DLPRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQEREQ 357 (1111)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 4444333322222211 1233344444444444444444441 11 11223556777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhc-----CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 841 VEADIQAHDDRIKDMNGQADSLIDS-----GQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIADEE 915 (1575)
Q Consensus 841 l~~ei~~~~~~v~~l~~~~~~L~~~-----~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~~~~f~~~~~~~~ 915 (1575)
+...+......+.........+... ...++..+...+..+.... .+...+......+... -......+..+-
T Consensus 358 l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~~~~-d~~~~~~~~~~~~~~~--~~~l~~~l~~L~ 434 (1111)
T PF13514_consen 358 LEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQRLG-DLEARLQEAEQALEAA--ERRLAAALAALG 434 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH--HHHHHHHHHhcC
Confidence 7777776666666555544444221 1123334444444433322 1222222222222111 112222333333
Q ss_pred HHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHH
Q psy6935 916 SWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQET 964 (1575)
Q Consensus 916 ~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~ 964 (1575)
-|-........ .++| +...+......+..+...+......+..+...
T Consensus 435 ~w~~~~~~l~~-~~~P-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1111)
T PF13514_consen 435 PWSGDLDALAA-LPLP-SRETVEAFRAEFEELERQLRRARDRLEELEEE 481 (1111)
T ss_pred CCCCChHHHhc-cCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333222 1222 45566666667666666666555544444333
No 83
>KOG0034|consensus
Probab=96.20 E-value=0.014 Score=60.74 Aligned_cols=67 Identities=24% Similarity=0.449 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHhcccCCC-CCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCc-ccHHHHHHHHhh
Q psy6935 1488 VSEDALKEFSMMFKHFDKD-KSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGH-VSLQEYMAFMIS 1565 (1575)
Q Consensus 1488 ~~~~~~~~~~~~F~~~D~~-~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~-i~~~ef~~~~~~ 1565 (1575)
++..++..+...|..+|.+ ++|.|+.++|..+. .+..+| -...|++.++++++|. |+|++|++++..
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np----------~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~ 95 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNP----------LADRIIDRFDTDGNGDPVDFEEFVRLLSV 95 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCc----------HHHHHHHHHhccCCCCccCHHHHHHHHhh
Confidence 7777888888888888888 88888888887776 444444 4566777777776666 777777776653
No 84
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.64 E-value=0.0091 Score=56.84 Aligned_cols=62 Identities=27% Similarity=0.467 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHH
Q psy6935 1491 DALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMA 1561 (1575)
Q Consensus 1491 ~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 1561 (1575)
.....+...|..+|.|+||.|+..|+......+ .+ ++.=+...+...|.|+||.|++.||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~-------~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MP-------PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--ST-------TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hh-------hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 344567889999999999999999998765544 33 445588999999999999999999975
No 85
>KOG0035|consensus
Probab=95.55 E-value=0.02 Score=71.89 Aligned_cols=317 Identities=22% Similarity=0.344 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHH
Q psy6935 1011 QHFLAKVEEEEAWISEKQQLLSVEDYGD-TMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRC 1089 (1575)
Q Consensus 1011 ~~f~~~~~el~~Wl~e~e~~l~~~~~~~-d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l 1089 (1575)
..|......-+.|.-..+..+...+++. -+.......+.|.++..++..+...+..+...+..|......++..+...+
T Consensus 397 ~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~~~~~~~a~~~ 476 (890)
T KOG0035|consen 397 SKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLYDDAKLVAADC 476 (890)
T ss_pred hhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 5677777888889988888887667764 567888899999999999999999999999999999988777788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Q psy6935 1090 QQLQLKLDNLMALATKRKTKLMDNS--------AYLQFMWKADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDA 1161 (1575)
Q Consensus 1090 ~~L~~~w~~L~~~~~~r~~~Le~~~--------~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l~~~~~~f~~ 1161 (1575)
+.+...|..+-.+...|+..|.... ....|...+..+..|+......+.+....-.+.+++.+...|..|..
T Consensus 477 q~i~dq~~~~~~ls~~r~pal~~~~~~~dk~~~~~le~a~Raa~~~~~l~~~~~d~~d~~~~~~ire~~~~~~a~~~~k~ 556 (890)
T KOG0035|consen 477 QHICDQWDDLGQLSRKRRPALMQMEKVLDKLAVLTLEFAKRAAPFNNWLKGVQEDLQDNEISYSIREIQRLRAADLQFKS 556 (890)
T ss_pred hhccccccccchhhhhhchhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhccchHhhhccchhhhhhcc
Confidence 9999999998888777777776542 22478888899999999977776665555666777777777777777
Q ss_pred hhhhhcc--ccHHHHHHHHHHHHhcCCC----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1162 GLHAFEH--EGIQNITTLKDQLVASNHD----Q-TPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTF 1234 (1575)
Q Consensus 1162 el~~~~~--~~~~~~~~~~~~L~~~~~~----~-~~~i~~~~~~l~~~w~~L~~~~~~r~~~L~~a~~~~~~~~~l~~~f 1234 (1575)
.+..... .........+.......++ + .+.+. ..+...|+.+......+...+......-+....+...|
T Consensus 557 t~p~a~~~~~~~~~e~~e~~~~~~~~~~~~~~~~np~~~---~s~~~~~d~v~~~~~~~~~~~~~~~~~q~~~~s~~~~~ 633 (890)
T KOG0035|consen 557 TLPEADGEGQKISDEEKEREKVSEQLNPKIEPDTNPYTT---LSIYGKWDAVLSSVPDRDSIEANVHARQQPNESLRRVF 633 (890)
T ss_pred cCccccchhhhhhhhhhHHHHhhhhcCcccccccccccc---cccccchhhhcccccccchhhHHHHHhhccCccccccc
Confidence 6654321 1222223333333322211 1 12222 22888899998888877765544322211111122223
Q ss_pred HHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcCchhhHhHHHHhhhhccCCc--cccCCHHHHHHHHHHHHHHHH
Q psy6935 1235 AKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWFENAEEDLTDP--VRCNSIEEIRALREAHAQFQA 1312 (1575)
Q Consensus 1235 ~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~~~~~l~~WL~~~e~~L~~~--~~~~~~~~v~~ll~~~~~~~~ 1312 (1575)
...++ ....|+...-...+.. ...++++.-...++ ....
T Consensus 634 ~q~an------------------------------------~~~p~vp~~~~e~s~~~~~~~gt~e~~~~rLr---~~~~ 674 (890)
T KOG0035|consen 634 AQQAN------------------------------------LDGPWVPAKMEESSRININDQGTLEDRLERLR---ETEE 674 (890)
T ss_pred ccccc------------------------------------CCCcccCchhhcccccccccCCCHHHHHHHHH---HHHH
Confidence 33333 4445665554444322 23455554444333 3333
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1313 SLSSAQADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIKERDIELAK 1369 (1575)
Q Consensus 1313 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~~~~r~~~Le~ 1369 (1575)
-+-...+..+.+....+.+.....+.+.++......+...|+.+..-+..-....+.
T Consensus 675 ~~~~~k~~~~~~~~~~q~~~~~~~~~~~~~~~~~e~~~~g~e~~~~~~~~~~~~~en 731 (890)
T KOG0035|consen 675 RSMNYKSNGDLLAKQHQLMQEDIIFENKHTRYTMEDLKVGWEELLTIIERTINESEN 731 (890)
T ss_pred HhhccCcchhHHHHHHHHhhhhccccccccccchhhccccccccccccccccccHHH
Confidence 344467777777777777777666777777778889999999888776655444433
No 86
>KOG4223|consensus
Probab=95.29 E-value=0.025 Score=61.93 Aligned_cols=70 Identities=30% Similarity=0.402 Sum_probs=54.0
Q ss_pred HHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1492 ALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1492 ~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
.+..-+.-|+.-|.|++|.++.+||.+.|.---.+- + .+--+...+..+|+||||+|+|+||+.=|....
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~-M-----~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPH-M-----KDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcch-H-----HHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 344567889999999999999999998774322111 0 345577788899999999999999999776543
No 87
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=95.11 E-value=15 Score=47.19 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=70.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc---c-ccCCCHHHHHHHHHHH
Q psy6935 1081 HADSITQRCQQLQLKLDNLMALATKRKTKLMDNSAYLQFMWKADVVESWIADKETHVKS---E-EYGRDLSTVQTLLTKQ 1156 (1575)
Q Consensus 1081 ~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~e~~l~~---~-~~~~d~~~~~~l~~~~ 1156 (1575)
.++.|..+...|..+|..|..-+..-++.|-+.--..-|.....++..-++..+..+.. . +.|...+.-..+-++.
T Consensus 236 a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i 315 (683)
T PF08580_consen 236 ACEELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQI 315 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence 34678888899999999999988888877776544445665556666666665554431 1 2233333333333444
Q ss_pred HHHHHhhhhhccccHHHH-HHHHHHHHhcCCCChHHHHHHHH-HHHHHHHHHHHH
Q psy6935 1157 ETFDAGLHAFEHEGIQNI-TTLKDQLVASNHDQTPAIVKRHG-DVIARWQKLLGD 1209 (1575)
Q Consensus 1157 ~~f~~el~~~~~~~~~~~-~~~~~~L~~~~~~~~~~i~~~~~-~l~~~w~~L~~~ 1209 (1575)
+.+..-+..+. ..| ......|+..| |..++. +|..+|..|...
T Consensus 316 ~s~~~k~~~~~----~~I~ka~~~sIi~~g------v~~r~n~~L~~rW~~L~~~ 360 (683)
T PF08580_consen 316 ESKEKKKSHYF----PAIYKARVLSIIDKG------VADRLNADLAQRWLELKED 360 (683)
T ss_pred HHHHHHHhccH----HHHHHHHHHHhhhhh------HHHHhhHHHHHHHHHHHHH
Confidence 44433333222 222 13334455332 677777 999999999733
No 88
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.02 E-value=0.029 Score=39.36 Aligned_cols=27 Identities=19% Similarity=0.456 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1538 EFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1538 ~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
++..++..+|.|++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 367899999999999999999999987
No 89
>PRK02224 chromosome segregation protein; Provisional
Probab=94.89 E-value=23 Score=48.33 Aligned_cols=74 Identities=16% Similarity=0.316 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy6935 840 LVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANT-LHQFFRDIADEESWI 918 (1575)
Q Consensus 840 ~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~-~~~f~~~~~~~~~Wl 918 (1575)
.+..++......++.+......+.. .......+..+..+++.+...+..+...++.... ...+...+.++..=+
T Consensus 479 ~~~~~~~~le~~l~~~~~~~e~l~~-----~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 479 ELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554443321 1223556667777777777777766666666553 555555555553333
No 90
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.33 E-value=21 Score=45.32 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccchhchhhHHHHHHHHHHHHHhhccccCCCCHHHHHHH
Q psy6935 543 VQARLASIADQWEFLT-QKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEAL 621 (1575)
Q Consensus 543 i~~~l~~l~~~w~~L~-~~~~~r~~~L~~~~~~r~~L~q~~~~~~f~~~~~~~l~~wL~~~E~~L~~~~~~~~~~~~~~~ 621 (1575)
........+..|+.+. ..+.+-...|..+=. .-....+.... ..+..+..-|..+|..+.. -...+..+
T Consensus 58 t~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~----~~~~~rf~ka~-~~i~~~~~~l~~~e~~i~~-----i~~~l~~L 127 (560)
T PF06160_consen 58 TEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEE----YADKYRFKKAK-QAIKEIEEQLDEIEEDIKE-----ILDELDEL 127 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHhcccHHHHH-HHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 5666777788887776 344422222222211 00001111222 3334444444444433322 12333334
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHH
Q psy6935 622 IKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEA 677 (1575)
Q Consensus 622 l~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~ 677 (1575)
+...+.-...+.........+......-..+-++..+.+...+..+...|..+...
T Consensus 128 ~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 128 LESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443332222223456677777788777777777664
No 91
>PRK03918 chromosome segregation protein; Provisional
Probab=94.11 E-value=33 Score=46.86 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=10.3
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q psy6935 1141 EYGRDLSTVQTLLTKQETF 1159 (1575)
Q Consensus 1141 ~~~~d~~~~~~l~~~~~~f 1159 (1575)
..+-|......+..-+..+
T Consensus 822 ~~~lD~~~~~~l~~~l~~~ 840 (880)
T PRK03918 822 TPFLDEERRRKLVDIMERY 840 (880)
T ss_pred CcccCHHHHHHHHHHHHHH
Confidence 3456666666555544444
No 92
>PRK03918 chromosome segregation protein; Provisional
Probab=93.74 E-value=38 Score=46.28 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy6935 837 KHQLVEADI 845 (1575)
Q Consensus 837 ~~~~l~~ei 845 (1575)
++..+..++
T Consensus 504 ~~~~l~~~l 512 (880)
T PRK03918 504 QLKELEEKL 512 (880)
T ss_pred HHHHHHHHH
Confidence 333333333
No 93
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.72 E-value=0.054 Score=36.77 Aligned_cols=28 Identities=46% Similarity=0.764 Sum_probs=25.1
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
++.+|+.+|.+++|.|+..+|..+++++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 29 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKAL 29 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHhC
Confidence 5789999999999999999999988753
No 94
>PF13514 AAA_27: AAA domain
Probab=93.38 E-value=48 Score=46.31 Aligned_cols=314 Identities=13% Similarity=0.171 Sum_probs=136.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHh
Q psy6935 390 KTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRL---GESQT 466 (1575)
Q Consensus 390 ~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L---~~~~~ 466 (1575)
....+-..+.+++.+...|............ +...+..+..++..+..........+ +....
T Consensus 148 ~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~---------------l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~ 212 (1111)
T PF13514_consen 148 RKPEINQALKELKELERELREAEVRAAEYQE---------------LQQALEEAEEELEELRAELKELRAELRRLERLRR 212 (1111)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777787777777766655444433 33333444444444444433333322 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCcHHHHHHH
Q psy6935 467 LQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQAR 546 (1575)
Q Consensus 467 ~~~f~~~~~el~~Wl~~~~~~l~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~ 546 (1575)
+..+......+...|....... ..++.....+.....+...+...+......+..+...-..+.. ..+.-.....
T Consensus 213 ~~p~~~~~~~l~~~l~~l~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~----~~~ll~~~~~ 287 (1111)
T PF13514_consen 213 AWPLLAELQQLEAELAELGEVP-DFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPV----DEELLAHAAE 287 (1111)
T ss_pred HhHHHHHHHHHHHHHHhcCCcC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CHHHHhhHHH
Confidence 2233333333333333221110 1122344555666666667777777777777776655544411 1111113333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhchhhHHHHHHHHHHHHHhhcc---------ccC-CCCHH
Q psy6935 547 LASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQAENWMSAREAFLNA---------EEV-DSKTD 616 (1575)
Q Consensus 547 l~~l~~~w~~L~~~~~~r~~~L~~~~~~r~~L~q~~~~~~f~~~~~~~l~~wL~~~E~~L~~---------~~~-~~~~~ 616 (1575)
+..|..+...+..... . +.... ..+......+......|.. ..+ .....
T Consensus 288 I~~L~~~~~~~~~~~~----d----------------l~~~~-~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 346 (1111)
T PF13514_consen 288 IEALEEQRGEYRKARQ----D----------------LPRLE-AELAELEAELRALLAQLGPDWDEEDLEALDPSLAARE 346 (1111)
T ss_pred HHHHHHHHHHHHHHHH----H----------------HHHHH-HHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHH
Confidence 3443333222221111 1 11111 2222223333333233331 111 11346
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhhc-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q psy6935 617 NVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAA-----DHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTL 691 (1575)
Q Consensus 617 ~~~~~l~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~-----~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~l 691 (1575)
.+..++..+..+...+......+.........+-.. .......+...+..+.... .+...+......+... -
T Consensus 347 ~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~~~~-d~~~~~~~~~~~~~~~--~ 423 (1111)
T PF13514_consen 347 RIRELLQEREQLEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQRLG-DLEARLQEAEQALEAA--E 423 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH--H
Confidence 677777777788777777777776665555444322 1223333444444433322 2222222222222211 1
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy6935 692 QQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVL 748 (1575)
Q Consensus 692 ~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~~l~ 748 (1575)
......+..+.-|-........ .+..++..+......+..+...+......+..+.
T Consensus 424 ~~l~~~l~~L~~w~~~~~~l~~-~~~P~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1111)
T PF13514_consen 424 RRLAAALAALGPWSGDLDALAA-LPLPSRETVEAFRAEFEELERQLRRARDRLEELE 479 (1111)
T ss_pred HHHHHHHHhcCCCCCChHHHhc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333344445432222211 2233555666666666666655555555444443
No 95
>KOG1955|consensus
Probab=93.17 E-value=0.18 Score=57.61 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1486 SGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1486 ~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
-.|++++.+.+-.-|+.+-.|-.|+|+..--+..+..-.+ +-.++..|+.-.|.++||-+++.||+..|.-
T Consensus 223 w~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSkl---------pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKL---------PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred cccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccC---------chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3589999999999999999999999999999988888766 4478999999999999999999999998753
No 96
>KOG4251|consensus
Probab=93.09 E-value=0.05 Score=56.08 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=48.3
Q ss_pred HHHHHHHhcccCCCCCCcccHHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1493 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1493 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
...+..+|+..|.+.+|+|+..|++.-+..- ..-+.. ..++-+..+..+|+||||.|+++||..-+
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqe-----ameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQE-----AMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHH-----HHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 3568899999999999999999999866542 111100 22334456678899999999999997643
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.98 E-value=0.11 Score=35.18 Aligned_cols=27 Identities=19% Similarity=0.538 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1539 FEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1539 ~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
+..++..+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678899999999999999999998863
No 98
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=92.62 E-value=40 Score=43.38 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccC----CCCCCCHHHHHHHHHH
Q psy6935 975 GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTY-QHFLAKVEEEEAWISEKQQLLSV----EDYGDTMAAVQGLLKK 1049 (1575)
Q Consensus 975 ~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~-~~f~~~~~el~~Wl~e~e~~l~~----~~~~~d~~~~~~~l~~ 1049 (1575)
.+..|..+-..|..+|..|...+..-+..|-+. .| .-|.....++..-+...+..+.. .+.|-....-..+-++
T Consensus 236 a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELied-RW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~ 314 (683)
T PF08580_consen 236 ACEELEDRYERLEKKWKKLEKEAESLKKELIED-RWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQ 314 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence 457788899999999999999988776666443 34 45666666666666666655431 1122222222333344
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHHH-HHHHHHHHHH
Q psy6935 1050 HDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQ-QLQLKLDNLM 1100 (1575)
Q Consensus 1050 ~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~-~L~~~w~~L~ 1100 (1575)
.+.+...+..+-+.|-. ...-.|+.. .|..++. .|..+|..|.
T Consensus 315 i~s~~~k~~~~~~~I~k--a~~~sIi~~------gv~~r~n~~L~~rW~~L~ 358 (683)
T PF08580_consen 315 IESKEKKKSHYFPAIYK--ARVLSIIDK------GVADRLNADLAQRWLELK 358 (683)
T ss_pred HHHHHHHHhccHHHHHH--HHHHHhhhh------hHHHHhhHHHHHHHHHHH
Confidence 44444444333333311 111123322 2677777 9999999997
No 99
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=92.27 E-value=0.13 Score=41.67 Aligned_cols=32 Identities=31% Similarity=0.595 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHH
Q psy6935 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRA 1522 (1575)
Q Consensus 1488 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~ 1522 (1575)
+++++ +..+|..||.|++|+|+..||..++..
T Consensus 22 ~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 56655 699999999999999999999998864
No 100
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=92.06 E-value=39 Score=41.92 Aligned_cols=211 Identities=12% Similarity=0.176 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHH-H
Q psy6935 869 DASSIQEKRQSINERYERIKNLAAHRQARLNEANT-LHQFFRD-IADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKH-K 945 (1575)
Q Consensus 869 ~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~-~~~f~~~-~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~-~ 945 (1575)
+..-+.-....|..-|+.+...+..|+..+...-. +...... .+.+..-|......+....+ ..+..+..++.+. .
T Consensus 59 d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~-~~~~dv~rli~~ea~ 137 (473)
T PF14643_consen 59 DSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEKIAH-LLPPDVERLIEKEAM 137 (473)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCcHHHHHHHHHHHH
Confidence 44556677788999999999999999888876653 4444444 33444444433222221111 1122344444332 2
Q ss_pred HHHHHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 946 RLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWIS 1025 (1575)
Q Consensus 946 ~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~ 1025 (1575)
.+-..+-+.+..+..+.. .|. ...++... ....+|.........- ++...+.++.
T Consensus 138 ~iN~~ll~Nrra~a~L~~---~L~------~~~~~~e~-~~~~~w~~~~~~Wr~l-----------~~~~~i~~f~---- 192 (473)
T PF14643_consen 138 EINQALLGNRRAYADLFA---NLM------EAELQREL-SYRRRWQDRVDDWRAL-----------RHERAIQEFR---- 192 (473)
T ss_pred HHHHHHHHhHHHHHHHHH---HHH------HHHHHHHH-HHHHHHHHHHHHHHHH-----------hHHHHHHHHH----
Confidence 333333333222222221 121 11222222 3444454444333211 1112222222
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhcc--CCCchhHHHHHHHHHHHHHHHHHHH
Q psy6935 1026 EKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAK--NHHADSITQRCQQLQLKLDNLMALA 1103 (1575)
Q Consensus 1026 e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~--~~~~~~i~~~l~~L~~~w~~L~~~~ 1103 (1575)
..+. .+...+|+++...+..+..-+..+.. ..+..|...+. +.++. ..........+..++..|......+
T Consensus 193 ---~~~~-s~~~~~P~~~~~~~e~~~~~Q~~l~~--~r~~~L~~l~~-l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~ 265 (473)
T PF14643_consen 193 ---EFMA-SEEFQNPPERKQLLEQMRKEQVDLHE--KRLELLQSLCD-LLPPNLTKEKVEEWYASLNALNEQIDEYHQQC 265 (473)
T ss_pred ---HHhC-ccccCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233 24456777888888888777777753 23333333332 22211 1112233455666666676666666
Q ss_pred HHHHHHHHH
Q psy6935 1104 TKRKTKLMD 1112 (1575)
Q Consensus 1104 ~~r~~~Le~ 1112 (1575)
-.+...+.+
T Consensus 266 ~~~lr~~~E 274 (473)
T PF14643_consen 266 MEKLRALYE 274 (473)
T ss_pred HHHHHHHHH
Confidence 555544443
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.95 E-value=0.24 Score=44.59 Aligned_cols=66 Identities=23% Similarity=0.561 Sum_probs=53.8
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHc-CC-CCCCCCCCCChHHHHHHHHHhCCC----CCCcccHHHHHHHHhhhhh
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRAL-GY-DLPMVEEGQPDPEFEAILDLVDPN----RDGHVSLQEYMAFMISKET 1568 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~-~~~~~~~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~~~~ 1568 (1575)
++..+|..+-. +.+.|+.++|...|+.- |. .. +..++..+|..+.++ ..|.++++.|..||.+..+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~-------~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N 72 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL-------TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDEN 72 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS-------SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC-------cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcC
Confidence 46788998855 88999999999999865 44 24 789999999988654 4789999999999987654
No 102
>KOG4223|consensus
Probab=91.72 E-value=0.13 Score=56.59 Aligned_cols=58 Identities=28% Similarity=0.423 Sum_probs=49.9
Q ss_pred HHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHH
Q psy6935 1497 SMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMA 1561 (1575)
Q Consensus 1497 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 1561 (1575)
...|...|+|++|+++..|+..-+.--++.. ...+...++...|.|+||++|++|-+.
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~-------A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWILPSEQDH-------AKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhcccCCCCccH-------HHHHHHHHhhhhccCccccccHHHHhh
Confidence 4677788999999999999997665556665 788899999999999999999999775
No 103
>KOG2643|consensus
Probab=91.60 E-value=0.15 Score=57.99 Aligned_cols=72 Identities=24% Similarity=0.480 Sum_probs=47.5
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHH------cCCCCCC-CCCCCC-hHHHHHHH--HHhCCCCCCcccHHHHHHHHh
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRA------LGYDLPM-VEEGQP-DPEFEAIL--DLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~------~g~~~~~-~~~~~~-~~~~~~~~--~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
.|.-+|+.||.||||-|+.+||..+..- +|..-.. ..++++ ..++...+ --|.++|+|++++++|..||-
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 4788999999999999999999887632 2221000 001111 11233322 346789999999999999997
Q ss_pred hh
Q psy6935 1565 SK 1566 (1575)
Q Consensus 1565 ~~ 1566 (1575)
..
T Consensus 314 ~L 315 (489)
T KOG2643|consen 314 NL 315 (489)
T ss_pred HH
Confidence 54
No 104
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.14 E-value=85 Score=44.07 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q psy6935 764 EEAVQARLASIADQWEFLTQKTTEKSLKLKEAN-KQRTYIAAVKDLDFWLGEVESL 818 (1575)
Q Consensus 764 ~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~-~~~~f~~~l~~l~~WL~~~e~~ 818 (1575)
...+...+..+......+.....+....+.... ....+...+..+..++..++..
T Consensus 441 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 496 (1163)
T COG1196 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555544442 2445555555555555555443
No 105
>KOG0042|consensus
Probab=90.23 E-value=0.72 Score=54.56 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=70.9
Q ss_pred hhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy6935 1483 RNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAF 1562 (1575)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 1562 (1575)
+....++++++..++.-|..+|.|+.|+++..++..+|++.+... +.+.+++++..+|.+-+|++...+|..+
T Consensus 582 ~~~i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~-------d~~~~~~~l~ea~~~~~g~v~l~e~~q~ 654 (680)
T KOG0042|consen 582 SIPIKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGW-------DEDRLHEELQEADENLNGFVELREFLQL 654 (680)
T ss_pred ccccccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHhhcceeeHHHHHHH
Confidence 334568999999999999999999999999999999999998777 7888999999999888999999999999
Q ss_pred Hhhhhhh
Q psy6935 1563 MISKETR 1569 (1575)
Q Consensus 1563 ~~~~~~~ 1569 (1575)
|...-..
T Consensus 655 ~s~~~~g 661 (680)
T KOG0042|consen 655 MSAIKNG 661 (680)
T ss_pred HHHHhcC
Confidence 9765443
No 106
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=90.18 E-value=0.19 Score=42.91 Aligned_cols=27 Identities=26% Similarity=0.618 Sum_probs=23.7
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHH
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCL 1520 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l 1520 (1575)
..+..+|+.+|+|++|.|+..||..++
T Consensus 40 ~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 40 EMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 356788999999999999999998764
No 107
>KOG0161|consensus
Probab=89.87 E-value=1.2e+02 Score=43.68 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=14.4
Q ss_pred cccccCChHhHHHHHHHHH
Q psy6935 51 SEDYGKDLTSVQNLQKKHA 69 (1575)
Q Consensus 51 s~~~g~dl~~v~~~l~kh~ 69 (1575)
=.|+|.|+....+++-|--
T Consensus 503 fidfG~Dlq~~idLIEkp~ 521 (1930)
T KOG0161|consen 503 FIDFGLDLQPTIDLIEKPM 521 (1930)
T ss_pred eeccccchhhhHHHHhchh
Confidence 3678888888888877644
No 108
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=89.19 E-value=0.41 Score=43.36 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=27.6
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHcC
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALG 1524 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 1524 (1575)
.++...|+.+|.|++|.|++.||...+.++.
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 5579999999999999999999999887763
No 109
>KOG2243|consensus
Probab=88.38 E-value=3.5 Score=52.68 Aligned_cols=157 Identities=8% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhcccCCcchhhhhhh
Q psy6935 1381 RKEFAKHANAFHQWLTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQ 1460 (1575)
Q Consensus 1381 ~~~f~~~~~~l~~Wl~~~~~~~~~~~~~l~~ql~~lk~l~~ei~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~ 1460 (1575)
.....+.+-.|..-..++.-.++..++.+ +-++.+..++...--+--.+-.-+.++-.+....+.-.--+..++..+-.
T Consensus 3968 hsrlwdavvgflhvfa~mqmklsqdssqi-ellkelldl~kdmvvmllsllegnvvngtigkqmvd~lvess~nvemilk 4046 (5019)
T KOG2243|consen 3968 HSRLWDAVVGFLHVFAHMQMKLSQDSSQI-ELLKELLDLLKDMVVMLLSLLEGNVVNGTIGKQMVDMLVESSNNVEMILK 4046 (5019)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHH-HHHHHHHHHHHHHHHHHHHHhhCCcccchhHHHHHHHHHHcCccHHHHHH
Q ss_pred hHHHHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHH
Q psy6935 1461 QWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFE 1540 (1575)
Q Consensus 1461 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 1540 (1575)
.|+.+...-.-... +.|+.||+||.|.|+..+|..+|.+-... |..+++
T Consensus 4047 ffdmflklkdltss-----------------------dtfkeydpdgkgiiskkdf~kame~~k~y--------tqse~d 4095 (5019)
T KOG2243|consen 4047 FFDMFLKLKDLTSS-----------------------DTFKEYDPDGKGIISKKDFHKAMEGHKHY--------TQSEID 4095 (5019)
T ss_pred HHHHHHHHhhcccc-----------------------ccchhcCCCCCccccHHHHHHHHhccccc--------hhHHHH
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhhhhhh
Q psy6935 1541 AILDLVDPNRDGHVSLQEYMAFMISKETR 1569 (1575)
Q Consensus 1541 ~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 1569 (1575)
-++.....|.+...+|++|+.-+....++
T Consensus 4096 fllscae~dend~~~y~dfv~rfhepakd 4124 (5019)
T KOG2243|consen 4096 FLLSCAEADENDMFDYEDFVDRFHEPAKD 4124 (5019)
T ss_pred HHHHhhccCccccccHHHHHHHhcCchhh
No 110
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.11 E-value=52 Score=37.25 Aligned_cols=133 Identities=11% Similarity=0.162 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 824 SGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANT 903 (1575)
Q Consensus 824 ~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~ 903 (1575)
.+.+...+...+++-+.+-.+|..+. +......|..-. .....-+..+...|.....-. ....+....
T Consensus 118 ~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El-------~~A~~LL~~v~~~~~~~~~~~---~~l~~~i~~ 185 (264)
T PF06008_consen 118 DQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDEL-------KEAEDLLSRVQKWFQKPQQEN---ESLAEAIRD 185 (264)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHhh---HHHHHHHHH
Confidence 34556777888888888888877653 444333333211 111112222222222222222 222233333
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhc
Q psy6935 904 -LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMD 970 (1575)
Q Consensus 904 -~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~ 970 (1575)
+.+|...+.++..||.+........ ..=....+..+..++.-..+|......+......|..++.
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea--~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQNKTREA--EDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999865543321 1111223334444444455566666666666777766653
No 111
>KOG0971|consensus
Probab=87.69 E-value=94 Score=39.75 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Q psy6935 1301 RALREAHAQFQASLSSAQADFEALAALDQQIKS 1333 (1575)
Q Consensus 1301 ~~ll~~~~~~~~~l~~~~~~~~~l~~~~~~l~~ 1333 (1575)
..+..+-.+|...+...+..++.+......+++
T Consensus 1015 a~lr~Ke~efeetmdaLq~di~~lEsek~elKq 1047 (1243)
T KOG0971|consen 1015 ALLRKKEKEFEETMDALQADIDQLESEKAELKQ 1047 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444555667777777777777777665554443
No 112
>KOG4673|consensus
Probab=87.12 E-value=85 Score=38.67 Aligned_cols=84 Identities=13% Similarity=0.208 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCCChh------
Q psy6935 904 LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVP------ 977 (1575)
Q Consensus 904 ~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~------ 977 (1575)
-..+...+.++..-|..++..+ -.+-..|..+|...+.+++.....++.|+...+....
T Consensus 582 ~~~lvqqv~dLR~~L~~~Eq~a---------------arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQI 646 (961)
T KOG4673|consen 582 ESMLVQQVEDLRQTLSKKEQQA---------------ARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQI 646 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHH
Confidence 3345555666666665554433 2344567778888888888888889988876554333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 978 -EIEQRLKLLNQAWSELKQLAANRGQ 1002 (1575)
Q Consensus 978 -~i~~~l~~L~~~w~~L~~~~~~r~~ 1002 (1575)
.++.-+..-...|+.+...+..|..
T Consensus 647 E~lQ~tl~~~~tawereE~~l~~rL~ 672 (961)
T KOG4673|consen 647 EALQETLSKAATAWEREERSLNERLS 672 (961)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 3444455555667776666655543
No 113
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=86.56 E-value=1.7e+02 Score=41.58 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhh
Q psy6935 1084 SITQRCQQLQLKLDNLMALATKRKTKLMDNS--AYLQFMWKADVVESWIADKETHV 1137 (1575)
Q Consensus 1084 ~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~--~~~~f~~~~~~l~~Wl~~~e~~l 1137 (1575)
.+..++..+..++..+......-...+...- ....|......+..........+
T Consensus 983 ~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 983 EVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444333333221 12345555555555555544433
No 114
>KOG0377|consensus
Probab=85.76 E-value=1.5 Score=49.86 Aligned_cols=71 Identities=25% Similarity=0.586 Sum_probs=53.0
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHc-CCCCCCC---------C-C--------------CCC-------------
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMV---------E-E--------------GQP------------- 1535 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~---------~-~--------------~~~------------- 1535 (1575)
.++...|+.+|.+.+|+|+......|+..+ |.++|=. + + +.+
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 467889999999999999999999999764 4443211 0 0 111
Q ss_pred --hHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1536 --DPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1536 --~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
...++.|+..+|.|+.|.|+.+||.....
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWK 574 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHH
Confidence 22345688899999999999999998653
No 115
>KOG1029|consensus
Probab=85.31 E-value=1.1 Score=54.63 Aligned_cols=68 Identities=26% Similarity=0.454 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1489 SEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1489 ~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
.....-.++..|+.+|+..+|+++...-+.+|...|+ +...+..|..--|.|+||+++-+||+-.|.-
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~L---------pq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGL---------PQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcCC---------chhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 3445567899999999999999999999999988777 5567888888889999999999999987753
No 116
>KOG2562|consensus
Probab=85.21 E-value=0.75 Score=53.19 Aligned_cols=62 Identities=18% Similarity=0.407 Sum_probs=46.7
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhC----CCCCCcccHHHHHHHHhhhh
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVD----PNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d----~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
+.--|..+|+|++|.|+.++|+..-..- + +.--+++|+..+- .-.+|+++|++|+.|+....
T Consensus 280 iy~kFweLD~Dhd~lidk~~L~ry~d~t---l-------t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 280 IYCKFWELDTDHDGLIDKEDLKRYGDHT---L-------TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred HHHHHhhhccccccccCHHHHHHHhccc---h-------hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 3445888999999999999998754332 2 3445888988443 44789999999999997643
No 117
>KOG4674|consensus
Probab=85.11 E-value=2e+02 Score=40.96 Aligned_cols=177 Identities=6% Similarity=0.138 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HhH
Q psy6935 399 KKHEDFDKAINAHEEKIGALQTLADQLIA---ADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGES--------QTL 467 (1575)
Q Consensus 399 ~~~~~l~~~l~~~~~~v~~l~~~~~~L~~---~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~--------~~~ 467 (1575)
.+++.|.-++....+.+.++......... .....-..+...+..+...++...+.+......++.. .+.
T Consensus 398 qqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~ren 477 (1822)
T KOG4674|consen 398 QQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLEREN 477 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665555433 1112233444444555555555544444444433332 122
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHhc----cc----cCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHh
Q psy6935 468 QQFSRDADEMENW-------IAEKLQLAT----EE----SYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLID 532 (1575)
Q Consensus 468 ~~f~~~~~el~~W-------l~~~~~~l~----~~----~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~ 532 (1575)
..+...+.++..= +++...... .+ .+..-.-+...|-.+..+..-...+...+..+...|..+=.
T Consensus 478 k~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~ 557 (1822)
T KOG4674|consen 478 KLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEA 557 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333332222 222222211 11 11223345666777777777777777777777777776633
Q ss_pred ccCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 533 KRQC--VGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQR 575 (1575)
Q Consensus 533 ~~~~--~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~r 575 (1575)
...+ ..-...+...+..+......|...+.+....+......|
T Consensus 558 ~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~er 602 (1822)
T KOG4674|consen 558 AEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTER 602 (1822)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 111124666666666777777776666665555555444
No 118
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.27 E-value=2.6 Score=42.54 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=58.4
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCC-------------------------------------------
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVE------------------------------------------- 1531 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~------------------------------------------- 1531 (1575)
.+..-...||+|+||.|..-|--..++++|+.+..+-
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 4566677899999999999999999999888532110
Q ss_pred ---CCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1532 ---EGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1532 ---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
.+-.+..+++|+..++..+.+.+++.|...++....
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 123578899999999988889999999999997643
No 119
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=84.02 E-value=2.9 Score=40.05 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=23.5
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHH
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCL 1520 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l 1520 (1575)
+...|..+|.|++|.||..||..||
T Consensus 82 ~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 82 IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 5789999999999999999999999
No 120
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.92 E-value=82 Score=35.64 Aligned_cols=134 Identities=13% Similarity=0.184 Sum_probs=68.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 930 YGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLT 1009 (1575)
Q Consensus 930 ~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~ 1009 (1575)
.+.+...+...++..+.+..+|..+. +......+..=.. .-..-+..+...|.............+.. .
T Consensus 118 ~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~-------~A~~LL~~v~~~~~~~~~~~~~l~~~i~~--~ 186 (264)
T PF06008_consen 118 DQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELK-------EAEDLLSRVQKWFQKPQQENESLAEAIRD--D 186 (264)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHH-------HHHHHHHHHHHHHhhHHHhhHHHHHHHHH--H
Confidence 35556677777777777777776653 3333333321111 11122222222222222222222221111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHh
Q psy6935 1010 YQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIE 1076 (1575)
Q Consensus 1010 ~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~ 1076 (1575)
+.+|...+.++..||.++....... ..=....+..+..++.-..+|......+......|..++.
T Consensus 187 L~~~~~kL~Dl~~~l~eA~~~~~ea--~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 187 LNDYNAKLQDLRDLLNEAQNKTREA--EDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987766411 0111223344555555555666666666666666665554
No 121
>KOG4666|consensus
Probab=83.02 E-value=1.2 Score=48.63 Aligned_cols=63 Identities=14% Similarity=0.293 Sum_probs=51.1
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRA-LGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
++-+|+.|+.+.||.+...+|-.+|.. +|.. .-.+-.++..++...+|+|+|.+|..|+...+
T Consensus 298 iq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~---------~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 298 IQYAFKRFSVAEDGISGEHILSLILQVVLGVE---------VLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhcCcc---------eeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 588999999999999999888777764 5653 23466778888888899999999999997654
No 122
>KOG3866|consensus
Probab=82.90 E-value=1.2 Score=48.00 Aligned_cols=70 Identities=26% Similarity=0.367 Sum_probs=49.0
Q ss_pred HHHhcccCCCCCCcccHHHHHHHHHHc---CCCCCCCCCCCC--hHHH----HHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1497 SMMFKHFDKDKSGKLNQTEFKSCLRAL---GYDLPMVEEGQP--DPEF----EAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1497 ~~~F~~~D~~~~g~i~~~el~~~l~~~---g~~~~~~~~~~~--~~~~----~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+..|...|.|+||+++-.+|.+.+..- -|++...++|-. .++. ..+|+.+|.|.|..|+.+||++-.-+.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 668999999999999999999988642 234422111110 1111 237788999999999999999866544
No 123
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=81.70 E-value=1.4 Score=40.83 Aligned_cols=38 Identities=24% Similarity=0.596 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHc-----CCCC
Q psy6935 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-----GYDL 1527 (1575)
Q Consensus 1487 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-----g~~~ 1527 (1575)
++++++ +..+|+.+|.+++|.|+.++|..++..+ |.++
T Consensus 40 ~~~~~e---v~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~ 82 (96)
T smart00027 40 GLPQTL---LAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPI 82 (96)
T ss_pred CCCHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCC
Confidence 566554 5788899999999999999999887643 7777
No 124
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=81.03 E-value=22 Score=41.71 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=92.5
Q ss_pred HHHHHHhHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhcccCCcchhhhhhhhH
Q psy6935 1383 EFAKHANAFHQWLTETRTSMMEGTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQW 1462 (1575)
Q Consensus 1383 ~f~~~~~~l~~Wl~~~~~~~~~~~~~l~~ql~~lk~l~~ei~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~ 1462 (1575)
.|...+..|.-....+...+.+.-+.+-+|+.-++.+..-+..+.-....+...- ..++..++|+.++-+.....+
T Consensus 378 efear~~Tf~l~~~~vsp~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~----asG~E~~rfka~en~nyavdl 453 (612)
T COG5069 378 EFEARVFTFWLNSLDVSPEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQP----ASGIEENRFKAFENENYAVDL 453 (612)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccc----cccchhhhhhhhcccchhhhh
Confidence 5665555543333333344455588999999998888888766665555444443 456788888887776665443
Q ss_pred HHHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCC
Q psy6935 1463 DQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527 (1575)
Q Consensus 1463 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 1527 (1575)
..-.-..-..+..++..-..+...++....+......|.++-+-+...++..+|-.++.++|...
T Consensus 454 G~~~gf~~v~ik~le~~~~~r~k~tl~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~ 518 (612)
T COG5069 454 GITEGFSLVGIKGLEILDGIRLKLTLVWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKG 518 (612)
T ss_pred hhhcCeeeeeechhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcccc
Confidence 33222222344455544444444455566777788899999877777799999999999998876
No 125
>KOG4578|consensus
Probab=80.92 E-value=1.6 Score=47.79 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=50.7
Q ss_pred HHHHHhcccCCCCCCcccHHH---HHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTE---FKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~e---l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
-+...|..+|+|++|.|...| |++++.+-.- +..=..++++..|.|+|..|+|.|++..+...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~---------~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSK---------PRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhcc---------HHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 367899999999999999988 5666655432 33446788889999999999999999988643
No 126
>KOG3555|consensus
Probab=80.86 E-value=2.6 Score=46.57 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1488 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
+.+--..++...|..+|.+.||.++..||..+-.. - .+.=++.+|...|...||.|+-.|++..+..
T Consensus 244 ~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----k-------nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 244 ILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----K-------NEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred cCcchhhhhhhhhhccccccccccCHHHhhhhhcc----C-------chhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 44556667899999999999999999999764321 1 3345889999999999999999999987653
No 127
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=78.46 E-value=3.3 Score=37.61 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHcC
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALG 1524 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 1524 (1575)
++..+|+.+|+|++|.|+..+|..++..+.
T Consensus 52 ~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 52 VVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 368888899999999999999998886653
No 128
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=78.14 E-value=3 Score=38.38 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=26.7
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
.++..+|+.+|.|++|.|+..||..++..+
T Consensus 53 ~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 53 MLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999988776
No 129
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=77.55 E-value=1.7 Score=40.16 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=29.1
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCC
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDL 1527 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~ 1527 (1575)
.++..+|+.+|.+++|.|+..+|..++..+++..
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999998876643
No 130
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.29 E-value=3.3e+02 Score=38.42 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 765 EAVQARLASIADQWEFLTQKTTEKSLKLKEA 795 (1575)
Q Consensus 765 ~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~ 795 (1575)
..+...+..+...+..+..........+...
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 402 (1163)
T COG1196 372 EELEELFEALREELAELEAELAEIRNELEEL 402 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666555555444
No 131
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=77.08 E-value=2e+02 Score=35.77 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=45.1
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 714 EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLK 793 (1575)
Q Consensus 714 ~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~ 793 (1575)
++...+|......+..+...+..+.... + .++.....+.+...++.........+..++..|+.....+..+...+.
T Consensus 197 s~~~~~P~~~~~~~e~~~~~Q~~l~~~r--~-~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~ 273 (473)
T PF14643_consen 197 SEEFQNPPERKQLLEQMRKEQVDLHEKR--L-ELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALY 273 (473)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHH--H-HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888877777776666432 2 333333333322211122344555677777777777777776666554
Q ss_pred H
Q psy6935 794 E 794 (1575)
Q Consensus 794 ~ 794 (1575)
+
T Consensus 274 E 274 (473)
T PF14643_consen 274 E 274 (473)
T ss_pred H
Confidence 3
No 132
>KOG2643|consensus
Probab=76.43 E-value=1.5 Score=50.38 Aligned_cols=57 Identities=16% Similarity=0.352 Sum_probs=47.5
Q ss_pred ccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1502 HFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1502 ~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
.+|-+.+|-||+.|..-.+.-|.. |..-+.-.++.+|.||||.|+.+||..++.-..
T Consensus 207 F~~lg~~GLIsfSdYiFLlTlLS~---------p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~ 263 (489)
T KOG2643|consen 207 FYKLGESGLISFSDYIFLLTLLSI---------PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIR 263 (489)
T ss_pred EEEcCCCCeeeHHHHHHHHHHHcc---------CcccceeeeeeeecCCCCcccHHHHHHHHHHHH
Confidence 457899999999999988888766 445677788899999999999999999885433
No 133
>KOG0976|consensus
Probab=74.30 E-value=2.5e+02 Score=35.57 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6935 1350 EDTWRNLQKIIKERDIELAK 1369 (1575)
Q Consensus 1350 ~~~w~~l~~~~~~r~~~Le~ 1369 (1575)
..+|..+...+..++..|.+
T Consensus 908 aerwA~CLq~aqk~rmmlns 927 (1265)
T KOG0976|consen 908 AERWALCLQDAQKVRMMLNS 927 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 47887777777666665543
No 134
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=73.70 E-value=3.4 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcC
Q psy6935 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALG 1524 (1575)
Q Consensus 1488 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 1524 (1575)
++++ ++...|+.+|.|++|.|++.+|...+..+.
T Consensus 48 ~t~~---ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 48 LQDA---EIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCHH---HHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4554 457789999999999999999999887663
No 135
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=70.84 E-value=4.8 Score=36.60 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.1
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
++..+|..||.+++|.|+..+|..++..+
T Consensus 52 ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 52 AVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 46778899999999999999999887654
No 136
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=70.45 E-value=4.4 Score=36.81 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=26.3
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
.++..+|+.+|.|++|.|+.++|..++..+
T Consensus 51 ~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 51 KAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 346889999999999999999999988765
No 137
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=70.35 E-value=4.2 Score=37.35 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.8
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
++..+|+.+|+|++|.|+..+|..++..+
T Consensus 53 ~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 53 AVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 46889999999999999999999988765
No 138
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=70.23 E-value=4.6 Score=36.73 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=25.9
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHcC
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALG 1524 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 1524 (1575)
++..+|+.+|.|++|.|+.+||...+..+.
T Consensus 53 ~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 53 VLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 457789999999999999999998887653
No 139
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=69.33 E-value=5.1 Score=33.95 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=24.7
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
.+..+|+.+|.+++|.|+..+|..++..+
T Consensus 34 ~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 34 VLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 35788999999999999999998877543
No 140
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=69.21 E-value=4.1 Score=33.47 Aligned_cols=26 Identities=35% Similarity=0.587 Sum_probs=22.7
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHH
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCL 1520 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l 1520 (1575)
.+..+|..+|.+++|.|+..+|..++
T Consensus 37 ~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 37 EIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 35779999999999999999998765
No 141
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.34 E-value=2e+02 Score=31.94 Aligned_cols=230 Identities=15% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHHHHHhhHHHH
Q psy6935 623 KKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQ-TLQQFSRDADEM 701 (1575)
Q Consensus 623 ~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~-~l~~f~~~~~el 701 (1575)
++...+..++......+..+.......... ...+...+..|..|...+...+.....+|.... .+..+...+++.
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~----~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~ 76 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKR----AEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADES 76 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhccCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHH
Q psy6935 702 ENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFL 781 (1575)
Q Consensus 702 ~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L 781 (1575)
..-+........ ....-...+..++........+....-..+..=+.....=+..... -...+..++..|......+
T Consensus 77 er~~k~lE~r~~-~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe--R~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 77 ERARKVLENREQ-SDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE--RAEAAESKIKELEEELKSV 153 (237)
T ss_dssp CHHHHHHHHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhchhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6935 782 TQKTTEKSLKLKEANK-QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQAD 860 (1575)
Q Consensus 782 ~~~~~~r~~~L~~~~~-~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~ 860 (1575)
...+..-...-..+.. -..|...+..|..-|.+++..... -...+..+-.....++.+|...+..+..+...-.
T Consensus 154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~-----aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEF-----AERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhh
Q psy6935 861 SLID 864 (1575)
Q Consensus 861 ~L~~ 864 (1575)
..+.
T Consensus 229 ~~l~ 232 (237)
T PF00261_consen 229 QTLN 232 (237)
T ss_dssp HHHH
T ss_pred HHHH
No 142
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=67.45 E-value=2.8e+02 Score=33.41 Aligned_cols=58 Identities=3% Similarity=0.189 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHH
Q psy6935 829 ASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERI 887 (1575)
Q Consensus 829 ~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L 887 (1575)
...+...+++..|+.||......|.........-- .....+..+...+..|......|
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCChhhHHHHHHHHHHHHHHh
Confidence 34566778888899999999888888766544432 22334556777788888777777
No 143
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=65.36 E-value=22 Score=36.30 Aligned_cols=68 Identities=10% Similarity=0.236 Sum_probs=49.4
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhh
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKE 1567 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 1567 (1575)
+-..|..|-+.+...++...|..+|+..|+.-.. .+..+++-|+..+-..+...|+|++|..+|....
T Consensus 4 ~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k----~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 4 VFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKK----LTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SS----S-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccccccHHHHHHHHHHcCCCCCC----CchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 3445555566777889999999999998764211 2788899999998777777899999999987543
No 144
>KOG4251|consensus
Probab=64.45 E-value=9.4 Score=40.07 Aligned_cols=55 Identities=24% Similarity=0.412 Sum_probs=47.7
Q ss_pred cccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHH
Q psy6935 1501 KHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAF 1562 (1575)
Q Consensus 1501 ~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 1562 (1575)
..+|.+++|.++..|+.+++.-+.+.. .-.++..|+...|.|++..++.++.+..
T Consensus 288 ElIDsNhDGivTaeELe~y~dP~n~~~-------alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 288 ELIDSNHDGIVTAEELEDYVDPQNFRL-------ALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHhhcCCccceeHHHHHhhcCchhhhh-------hHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 467999999999999999877776666 6778899999999999999999998764
No 145
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=64.07 E-value=3.1 Score=35.37 Aligned_cols=54 Identities=9% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCC-------CCCcccHHHHHHH
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPN-------RDGHVSLQEYMAF 1562 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~ 1562 (1575)
+.+..+|+.+ .++.++|+..+|...| ++++++-.+..+.+- ..|..+|..|+.-
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l--------------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL--------------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS---------------CCCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc--------------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 3468999999 8899999999999875 333444444444321 2367899998753
No 146
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=63.12 E-value=3.4e+02 Score=32.76 Aligned_cols=57 Identities=7% Similarity=0.139 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHH
Q psy6935 617 NVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLL 674 (1575)
Q Consensus 617 ~~~~~l~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l 674 (1575)
..+....++..|..++......|.........-- ........+...+..|......+
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCChhhHHHHHHHHHHHHHHh
Confidence 4455667888888888888888877765443322 22223344666777777777776
No 147
>KOG4673|consensus
Probab=61.97 E-value=4e+02 Score=33.28 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHHH
Q psy6935 1011 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQ 1090 (1575)
Q Consensus 1011 ~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~ 1090 (1575)
..|...+.+|-.-|..++..+ -++-+.|..++...+.++.....++..|+..-+.....+-.++.
T Consensus 583 ~~lvqqv~dLR~~L~~~Eq~a---------------arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE 647 (961)
T KOG4673|consen 583 SMLVQQVEDLRQTLSKKEQQA---------------ARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE 647 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence 455566666666666655544 23455677777777777777777888887764444434444444
Q ss_pred HHHH
Q psy6935 1091 QLQL 1094 (1575)
Q Consensus 1091 ~L~~ 1094 (1575)
.|+.
T Consensus 648 ~lQ~ 651 (961)
T KOG4673|consen 648 ALQE 651 (961)
T ss_pred HHHH
Confidence 4443
No 148
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=60.41 E-value=5.2e+02 Score=34.05 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHhc
Q psy6935 435 PIDDKRKQVLDRWRLLKEALIEKRSRLGES-QTLQQFSRDADEMENWIAEKLQLAT 489 (1575)
Q Consensus 435 ~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~-~~~~~f~~~~~el~~Wl~~~~~~l~ 489 (1575)
.....+..|....+.+..-+...+..++.+ ..+.......+....=|......|.
T Consensus 111 ~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~ 166 (775)
T PF10174_consen 111 KAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQ 166 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555555553 3344444444555555555555554
No 149
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=58.48 E-value=12 Score=29.59 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=24.1
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHc
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRAL 1523 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~ 1523 (1575)
.....|+..|++++|++..+||...++.|
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 35779999999999999999999877654
No 150
>KOG0038|consensus
Probab=58.42 E-value=11 Score=36.47 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=45.0
Q ss_pred ccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhhhh
Q psy6935 1502 HFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISKET 1568 (1575)
Q Consensus 1502 ~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 1568 (1575)
.|-.||.|.++.++|-+++.-+...-+ .+-.+.-.++.+|.|+|+.|--++....+.....
T Consensus 79 ~FSeDG~GnlsfddFlDmfSV~sE~AP------rdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr 139 (189)
T KOG0038|consen 79 VFSEDGRGNLSFDDFLDMFSVFSEMAP------RDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTR 139 (189)
T ss_pred HhccCCCCcccHHHHHHHHHHHHhhCh------HHhhhhheeEEeecCCCCcccHHHHHHHHHHHhh
Confidence 445699999999999998876654331 2233445667789999999999998888776543
No 151
>KOG1707|consensus
Probab=54.30 E-value=12 Score=45.47 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=50.3
Q ss_pred hhcCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHH
Q psy6935 1483 RNQSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMA 1561 (1575)
Q Consensus 1483 ~~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 1561 (1575)
..+..+++.-+..+..+|..||.|+||-++..||...+...+..+-.+ +. +.... -.+..|.++|.-|+.
T Consensus 304 ~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~----~~-~~~~t----~~~~~G~ltl~g~l~ 373 (625)
T KOG1707|consen 304 DQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTS----SP-YKDST----VKNERGWLTLNGFLS 373 (625)
T ss_pred CcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCC----Cc-ccccc----eecccceeehhhHHH
Confidence 335678999999999999999999999999999999998876543110 00 00111 123568888888775
No 152
>KOG0169|consensus
Probab=53.57 E-value=25 Score=44.13 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1488 VSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1488 ~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
........+..+|..+|++.+|.++..+...+++.+...+ .......+++..+..++|.+.+.+|+.+...
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l-------~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQL-------SESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhh-------hHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 4444556688999999999999999999999999988877 6777788888887778889999998887654
No 153
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=52.74 E-value=15 Score=33.26 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=26.2
Q ss_pred HHHHHhcccCCCCCCcccHHHHHHHHHHcC
Q psy6935 1495 EFSMMFKHFDKDKSGKLNQTEFKSCLRALG 1524 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~g~i~~~el~~~l~~~g 1524 (1575)
.+..+|+.+|.|+||.|+..||...+..+.
T Consensus 49 ~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 49 AVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 368899999999999999999998887663
No 154
>PRK01156 chromosome segregation protein; Provisional
Probab=52.48 E-value=7.8e+02 Score=33.67 Aligned_cols=15 Identities=13% Similarity=-0.166 Sum_probs=7.3
Q ss_pred cccCCCHHHHHHHHH
Q psy6935 1140 EEYGRDLSTVQTLLT 1154 (1575)
Q Consensus 1140 ~~~~~d~~~~~~l~~ 1154 (1575)
|..+-|......+..
T Consensus 834 pt~~lD~~~~~~l~~ 848 (895)
T PRK01156 834 PTAFLDEDRRTNLKD 848 (895)
T ss_pred CCCcCCHHHHHHHHH
Confidence 344556555544433
No 155
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=51.60 E-value=16 Score=34.25 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=27.4
Q ss_pred cCCCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHH
Q psy6935 1485 QSGVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLR 1521 (1575)
Q Consensus 1485 ~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~ 1521 (1575)
.++++.+.+ ..++..-|.|++|+++..||.-+|.
T Consensus 37 ~S~L~~~~L---~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 37 KSGLPRDVL---AQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HTTSSHHHH---HHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HcCCCHHHH---HHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 467887665 7777899999999999999987664
No 156
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=51.13 E-value=0.8 Score=36.16 Aligned_cols=47 Identities=45% Similarity=0.918 Sum_probs=37.2
Q ss_pred hhhccccchhhhhcchhhHHHHHhhcCcchhHHhhccccccchhhHH
Q psy6935 153 LYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199 (1575)
Q Consensus 153 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~ 199 (1575)
+|+|....+.|+++..+++..++......||.....++.+++|+++|
T Consensus 2 l~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV 48 (49)
T PF14604_consen 2 LYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYV 48 (49)
T ss_dssp SSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGE
T ss_pred CccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhC
Confidence 57777878889999999988888777788998888788889987664
No 157
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=50.11 E-value=75 Score=41.98 Aligned_cols=29 Identities=21% Similarity=0.223 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy6935 890 LAAHRQARLNEANT--LHQFFRDIADEESWI 918 (1575)
Q Consensus 890 ~~~~R~~~Le~~~~--~~~f~~~~~~~~~Wl 918 (1575)
.+..|..+|.+... ...|...|..+++|=
T Consensus 617 ~~ekr~~RLkevf~~ks~eFr~av~~llGyk 647 (722)
T PF05557_consen 617 SAEKRNQRLKEVFKAKSQEFREAVYSLLGYK 647 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcce
Confidence 34566666766653 677888888888774
No 158
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=49.83 E-value=37 Score=40.42 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.5
Q ss_pred HHHHhcccCCCCCCcccHHHHHHHHHH
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSCLRA 1522 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~l~~ 1522 (1575)
...+|..||.|++|.|+..||..++..
T Consensus 359 ~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 359 SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 578899999999999999999998864
No 159
>KOG2562|consensus
Probab=49.77 E-value=34 Score=40.31 Aligned_cols=102 Identities=15% Similarity=0.182 Sum_probs=67.6
Q ss_pred chhhhhhhhHHHHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhc----ccCCCCCCcccHHHHHHHHHHcCCCCC
Q psy6935 1453 HSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFK----HFDKDKSGKLNQTEFKSCLRALGYDLP 1528 (1575)
Q Consensus 1453 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~----~~D~~~~g~i~~~el~~~l~~~g~~~~ 1528 (1575)
++.......++.++.+=..+...++..-..+-..+....-+ +..+|. .+-.-.+|++++++|-..+.++-..-
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~i--vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~- 348 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERI--VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD- 348 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHH--HHHHHhhccccceeeecCcccHHHHHHHHHHhccCC-
Confidence 56666666666666555555554444333332222222222 456666 45556789999999999988886555
Q ss_pred CCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1529 MVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1529 ~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
++.-++-+++.+|.+|+|.++-.|.--|+
T Consensus 349 ------t~~SleYwFrclDld~~G~Lt~~el~~fy 377 (493)
T KOG2562|consen 349 ------TPASLEYWFRCLDLDGDGILTLNELRYFY 377 (493)
T ss_pred ------CccchhhheeeeeccCCCcccHHHHHHHH
Confidence 66778899999999999999988755444
No 160
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=48.65 E-value=2.6e+02 Score=27.08 Aligned_cols=79 Identities=13% Similarity=0.349 Sum_probs=53.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-------------cCCCChHHHHHHHHHHHHHHHHHHHH
Q psy6935 824 SGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLID-------------SGQFDASSIQEKRQSINERYERIKNL 890 (1575)
Q Consensus 824 ~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~-------------~~~~~~~~i~~~~~~l~~r~~~L~~~ 890 (1575)
.|.+...++.+-..++.++.++...+..+..+...-..+.. ......+.+...+..+..||+.+...
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777777777666554433311 11124457888889999999999999
Q ss_pred HHHHHHHHHHHH
Q psy6935 891 AAHRQARLNEAN 902 (1575)
Q Consensus 891 ~~~R~~~Le~~~ 902 (1575)
+.++....++..
T Consensus 91 lGEK~E~veEL~ 102 (120)
T PF12325_consen 91 LGEKSEEVEELR 102 (120)
T ss_pred hcchHHHHHHHH
Confidence 988887777553
No 161
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.26 E-value=99 Score=40.89 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=39.5
Q ss_pred CCCHHHHHH--HHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 931 GRDLTGVQN--LKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL-GVPEIEQRLKLLNQAWSELKQLAANRGQKLDES 1007 (1575)
Q Consensus 931 ~~~~~~~~~--~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~-~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~ 1007 (1575)
..+|..... ....+..|+.|.......+..+...+..-....|. ........+..|...-. .+..|...|..+
T Consensus 553 r~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~----~~ekr~~RLkev 628 (722)
T PF05557_consen 553 RDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELA----SAEKRNQRLKEV 628 (722)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 455555443 33455666666655555444332221111111111 11122333444443332 334556666666
Q ss_pred HH--HHHHHHHHHHHHHHH
Q psy6935 1008 LT--YQHFLAKVEEEEAWI 1024 (1575)
Q Consensus 1008 ~~--~~~f~~~~~el~~Wl 1024 (1575)
.. ...|-..+..+..|=
T Consensus 629 f~~ks~eFr~av~~llGyk 647 (722)
T PF05557_consen 629 FKAKSQEFREAVYSLLGYK 647 (722)
T ss_dssp HHHHHHHHHHHHHHHHSEE
T ss_pred HHHHHHHHHHHHHHHhcce
Confidence 63 367888888888773
No 162
>KOG0933|consensus
Probab=47.59 E-value=8.3e+02 Score=32.54 Aligned_cols=231 Identities=16% Similarity=0.184 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHH
Q psy6935 400 KHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGES-QTLQQFSRDADEME 478 (1575)
Q Consensus 400 ~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~-~~~~~f~~~~~el~ 478 (1575)
.+.....+|.+....|..+...-+.= .+.....+..++..+..--......+......|..- .........+.+..
T Consensus 266 ~~~k~~~ei~~le~~ikei~~~rd~e---m~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~ 342 (1174)
T KOG0933|consen 266 SLGKTDKEIESLEKEIKEIEQQRDAE---MGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDR 342 (1174)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH---hchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence 33344444444444444444322211 122335666666666666655555555555555553 45555666666666
Q ss_pred HHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHH
Q psy6935 479 NWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLT 558 (1575)
Q Consensus 479 ~Wl~~~~~~l~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~ 558 (1575)
.-|..++..+.. .........+.++.....+...+..++.|.. | + .++.. .+..+..+|.........+.
T Consensus 343 ~~l~~k~~~~~~----~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~-G--~-Ss~~~--~e~~l~~ql~~aK~~~~~~~ 412 (1174)
T KOG0933|consen 343 KKLKEKEKAMAK----VEEGYEKLKEAFQEDSKLLEKAEELVESLTA-G--L-SSNED--EEKTLEDQLRDAKITLSEAS 412 (1174)
T ss_pred HHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--c-ccCcc--chhhHHHHHHHHHHHHHHHH
Confidence 666666666651 1123334444555555555555555544431 1 1 11111 22247777776665555554
Q ss_pred HHHHHHHHHHHH---HHHHH-HHHHHhh-ccchhchhhHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy6935 559 QKTTEKSLKLKE---ANKQR-TYIAAVK-DLPYFSKKDCEQAENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAIN 633 (1575)
Q Consensus 559 ~~~~~r~~~L~~---~~~~r-~~L~q~~-~~~~f~~~~~~~l~~wL~~~E~~L~~~~~~~~~~~~~~~l~~~~~l~~~l~ 633 (1575)
.....-.-+++. -++.+ -.+.... +...-. ..++.+..-+...+..|.. ++......+.+.++...+...+.
T Consensus 413 t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~-~~ld~~q~eve~l~~~l~~--l~~~~~~~e~l~q~~~~l~~~~~ 489 (1174)
T KOG0933|consen 413 TEIKQAKLKLEHLRKELKLREGELATASAEYVKDI-EELDALQNEVEKLKKRLQS--LGYKIGQEEALKQRRAKLHEDIG 489 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHHHHHH
Confidence 444322222222 12211 1111000 001111 2333344444455555555 33344455555556666666666
Q ss_pred HhHHHHHHHHHhH
Q psy6935 634 AHEEKIGALQTLA 646 (1575)
Q Consensus 634 ~~~~~~~~l~~~a 646 (1575)
.....++.+....
T Consensus 490 ~lk~~~~~l~a~~ 502 (1174)
T KOG0933|consen 490 RLKDELDRLLARL 502 (1174)
T ss_pred HHHHHHHHHHhhh
Confidence 6666666665544
No 163
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.78 E-value=1.4e+02 Score=32.74 Aligned_cols=88 Identities=10% Similarity=0.176 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q psy6935 768 QARLASIADQWEFLTQ-KTTEKSLKLKEANK--QRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEAD 844 (1575)
Q Consensus 768 ~~~l~~l~~~w~~L~~-~~~~r~~~L~~~~~--~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~e 844 (1575)
.+-+.....-|+.+.. .....+.+++.-+. ...+++.-+.+..|+...+.. ........-..++..+.+++.++++
T Consensus 18 ~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~Rk~IE~~MErFK~vEke 96 (233)
T PF04065_consen 18 QEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENRKLIEEQMERFKVVEKE 96 (233)
T ss_pred HHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555 23334455555443 556677777788888654433 1100111123455666677777776
Q ss_pred HHHHHHHHHHHH
Q psy6935 845 IQAHDDRIKDMN 856 (1575)
Q Consensus 845 i~~~~~~v~~l~ 856 (1575)
.....-.-..|.
T Consensus 97 sKtKafSkeGL~ 108 (233)
T PF04065_consen 97 SKTKAFSKEGLM 108 (233)
T ss_pred hcccccchhhhh
Confidence 665555444444
No 164
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=45.72 E-value=1e+03 Score=33.01 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=30.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHhc
Q psy6935 433 AKPIDDKRKQVLDRWRLLKEALIEKRSRLGES-QTLQQFSRDADEMENWIAEKLQLAT 489 (1575)
Q Consensus 433 ~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~-~~~~~f~~~~~el~~Wl~~~~~~l~ 489 (1575)
...+++++......-..+.........++.+. ..++..-+...+...-+.+....+.
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~ 161 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQ 161 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHh
Confidence 35566666666655555555555555555331 1222222333666666777777776
No 165
>KOG0971|consensus
Probab=45.49 E-value=8.3e+02 Score=31.96 Aligned_cols=31 Identities=3% Similarity=0.159 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy6935 1042 AVQGLLKKHDAFETDFSVHRDRCADICSAGN 1072 (1575)
Q Consensus 1042 ~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~ 1072 (1575)
.++..+..-+.|.-.++.+...|..|...+.
T Consensus 942 ~~K~~~edaegL~~tle~re~eikeLkk~aK 972 (1243)
T KOG0971|consen 942 ALKAEIEDAEGLGLTLEDRETEIKELKKSAK 972 (1243)
T ss_pred HHHHHHHhhhhhhhhHHhhHHHHHHHHHHHH
Confidence 4455556667777788888888888877655
No 166
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=45.35 E-value=6.7e+02 Score=30.82 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=50.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy6935 408 INAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQL 487 (1575)
Q Consensus 408 l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~~~~~~ 487 (1575)
|...+..+..+......|+.+....+. ........|..+...+..++.. |...+..+..-|++.+..
T Consensus 113 l~~iE~~i~~il~~l~~Lv~sEekN~~----~i~~~~ely~elr~~vl~n~~~---------~Ge~~~~lEk~Le~i~~~ 179 (570)
T COG4477 113 LTLIEEDIEQILEDLNELVESEEKNSE----EIDHVLELYEELRRDVLANRHQ---------YGEAAPELEKKLENIEEE 179 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHhhhh---------hhhhhHHHHHHHHHHHHH
Confidence 444455555555555556554322332 3334455666666666665554 555556666666666666
Q ss_pred hc----cccCCChhHHHHHHHHHHHHHHHH
Q psy6935 488 AT----EESYKDPANIQSKHQKHQAFEAEL 513 (1575)
Q Consensus 488 l~----~~~~~d~~~~~~~l~~~~~l~~el 513 (1575)
++ -...+|+-.+..-+...+.....+
T Consensus 180 l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L 209 (570)
T COG4477 180 LSQFVELTSSGDYIEAREVLEEAEEHMIAL 209 (570)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 65 234567766666665555444333
No 167
>KOG0998|consensus
Probab=45.13 E-value=10 Score=50.06 Aligned_cols=71 Identities=24% Similarity=0.419 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1487 GVSEDALKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1487 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
.+++.....+..+|...|++++|.|+..+....+...|. +...+..+....|..+.|.+++.+|.-.|...
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl---------~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGL---------SKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCCC---------ChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 678888899999999999999999999999988877666 55678999999999999999999998877543
No 168
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=44.52 E-value=4.9e+02 Score=29.00 Aligned_cols=102 Identities=13% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1033 VEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMD 1112 (1575)
Q Consensus 1033 ~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~ 1112 (1575)
+..++.+-..+.-++.+.+.+..++...+...-.+...-..++. ...+..++.+..-...+...+..+...|..
T Consensus 44 ~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~------~lgkeelqkl~~eLe~vLs~~q~KnekLke 117 (268)
T PF11802_consen 44 TETLTDSDAQLSLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLL------TLGKEELQKLISELEMVLSTVQSKNEKLKE 117 (268)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666677788888888887776554332222111111 134578888999999999999999999998
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhhhhhccc
Q psy6935 1113 NSAY-LQFMWKADVVESWIADKETHVKSE 1140 (1575)
Q Consensus 1113 ~~~~-~~f~~~~~~l~~Wl~~~e~~l~~~ 1140 (1575)
.+.. .++..+...+..-+......+...
T Consensus 118 ~LerEq~wL~Eqqql~~sL~~r~~elk~~ 146 (268)
T PF11802_consen 118 DLEREQQWLDEQQQLLESLNKRHEELKNQ 146 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8765 478888877777777777666654
No 169
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=44.33 E-value=6.1e+02 Score=30.06 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 767 VQARLASIADQWEFLTQKTTEKSLKLK 793 (1575)
Q Consensus 767 i~~~l~~l~~~w~~L~~~~~~r~~~L~ 793 (1575)
.+.++.+++.+|......+.++...|.
T Consensus 278 ~~~~ls~~~~~y~~~s~~V~~~t~~L~ 304 (359)
T PF10498_consen 278 AQDELSEVQEKYKQASEGVSERTRELA 304 (359)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 555666666666666666665555543
No 170
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=43.52 E-value=6.1e+02 Score=29.82 Aligned_cols=307 Identities=13% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhhc-CCCCCchHHHHHHH--------
Q psy6935 596 ENWMSAREAFLNAEEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAA-DHYAAKPIDDKRKQ-------- 666 (1575)
Q Consensus 596 ~~wL~~~E~~L~~~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~-~~~~~~~i~~~~~~-------- 666 (1575)
+.|...+...|. .+...++..++.++..-+.+.-.+...-..+..+...|+..+.. ..........+...
T Consensus 1 d~W~~k~~~~l~-~~~k~~L~~l~~Ll~e~e~~~~~~~~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~~~~~~ 79 (335)
T PF08429_consen 1 DTWAEKVKEALE-ESPKPSLKELRSLLSEGEKIPFPLPELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKAEDQKS 79 (335)
T ss_pred ChhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCccccccc
Q ss_pred -HHHHHHHHHHHHHHHHHHhHhhHHHHHHHhhHHHHHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHHHHHHHhhHHHH
Q psy6935 667 -VLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQ 745 (1575)
Q Consensus 667 -l~~r~~~l~~~~~~r~~~Le~~~~l~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~ 745 (1575)
-......|...+.+-..--=...++.....-+..+..|-......+..+...+...++..+.....|--++......-.
T Consensus 80 ~~~~~l~~l~~Ll~e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~ 159 (335)
T PF08429_consen 80 RNKLTLEELEALLEEIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRR 159 (335)
T ss_pred cccCCHHHHHHHHHHHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHH
Q ss_pred HH-----HHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 746 SV-----LAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKL---KEANKQRTYIAAVKDLDFWLGEVES 817 (1575)
Q Consensus 746 ~l-----~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L---~~~~~~~~f~~~l~~l~~WL~~~e~ 817 (1575)
.+ ......++.... .-..+.+...+. .+..+ ...-....+...+.....|-..+..
T Consensus 160 ~l~~~~W~~~~~~~~~~~~---------------~~tL~~l~~Ll~-~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~ 223 (335)
T PF08429_consen 160 RLEQLEWLEEAREILSDPD---------------RLTLDELRELLD-EGERLGIPSDEKLMAELQELLKQGEEWEEKAKE 223 (335)
T ss_pred HHHHHHHHHHHHHHhcccc---------------CCcHHHHHHHHH-hhhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHH-------HHHHHHH
Q psy6935 818 LLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINER-------YERIKNL 890 (1575)
Q Consensus 818 ~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r-------~~~L~~~ 890 (1575)
.|. ....++..+...+.....+--.+..+. .+..+...+.. ...++..+..+ |..+...
T Consensus 224 ~L~--~~~~~l~~Le~l~~~~~~ipv~~~~~~-~L~~~l~kak~-----------w~~~i~~ll~~~~~~~p~~~el~~l 289 (335)
T PF08429_consen 224 LLS--RPRVSLEQLEALLEEAENIPVSLPSLD-KLKDALQKAKE-----------WLRQIEELLEQNGSKRPTLDELEEL 289 (335)
T ss_pred HHh--cCCCCHHHHHHHHHHHhcCCCchHHHH-HHHHHHHHHHH-----------HHHHHHHHhcccCCCCCcHHHHHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCH
Q psy6935 891 AAHRQARLNEANT-LHQFFRDIADEESWIKEKKLLVGSDDYGRDL 934 (1575)
Q Consensus 891 ~~~R~~~Le~~~~-~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~ 934 (1575)
+ .+...|-.... ...+...+.....|...........+.+-++
T Consensus 290 ~-~~~~~L~~~~~~~~~Le~~~~~~~~W~~~~~k~F~k~ns~~~l 333 (335)
T PF08429_consen 290 V-AESEELPVKLEELSDLEKQLKRAEDWMEKAKKLFLKKNSPLHL 333 (335)
T ss_pred H-HHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHhcccCchhhh
No 171
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=42.53 E-value=40 Score=32.30 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=19.8
Q ss_pred HHHHhcccCCCCCCcccHHHHHHH
Q psy6935 1496 FSMMFKHFDKDKSGKLNQTEFKSC 1519 (1575)
Q Consensus 1496 ~~~~F~~~D~~~~g~i~~~el~~~ 1519 (1575)
++..|+.-|.|+||.||..|...|
T Consensus 90 ~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 90 ARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHccC
Confidence 688999999999999999998765
No 172
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=41.95 E-value=8.6e+02 Score=31.10 Aligned_cols=80 Identities=13% Similarity=0.155 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 937 VQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL---GVPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHF 1013 (1575)
Q Consensus 937 ~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~---~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f 1013 (1575)
+...+..-+.++.+|......++........++=...- .....-..|..|+..++.|...+. ....+
T Consensus 507 I~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~----------~tG~~ 576 (594)
T PF05667_consen 507 IEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVE----------ETGTI 576 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH----------HhhHH
Confidence 44555666677777777777777777777666522111 111223334444444444433333 33456
Q ss_pred HHHHHHHHHHHHH
Q psy6935 1014 LAKVEEEEAWISE 1026 (1575)
Q Consensus 1014 ~~~~~el~~Wl~e 1026 (1575)
...+.+|+.+|..
T Consensus 577 ~rEirdLe~qI~~ 589 (594)
T PF05667_consen 577 SREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777754
No 173
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=41.13 E-value=6.3e+02 Score=29.31 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 615 TDNVEALIKKHEDFDKAINAHEEK-----------IGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRS 683 (1575)
Q Consensus 615 ~~~~~~~l~~~~~l~~~l~~~~~~-----------~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~ 683 (1575)
++.|..+-...+.|..+|...... +..=...+...+.........+.-.+..+......+...+..-..
T Consensus 17 IekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~ 96 (312)
T PF00038_consen 17 IEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA 96 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HhHhhH-HHHHHHhhHHHHHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHhHhccCCC
Q psy6935 684 RLGESQ-TLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEA-ELAANADRIQSVLAMGQNLIDKRQCV 761 (1575)
Q Consensus 684 ~Le~~~-~l~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~-el~~~~~~l~~l~~~g~~L~~~~~~~ 761 (1575)
...... .+..+..++++...-..+....+. .++..+.-.+.... |+...+..+. +...+....++
T Consensus 97 ~~~~le~el~~lrk~ld~~~~~r~~le~~i~--------~L~eEl~fl~~~heeEi~~L~~~~~-----~~~~~e~~~~~ 163 (312)
T PF00038_consen 97 ERKDLEEELESLRKDLDEETLARVDLENQIQ--------SLKEELEFLKQNHEEEIEELREQIQ-----SSVTVEVDQFR 163 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHTTSTT------------------
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH--------HHHHHHHHHHhhhhhhhhhhhhccc-----cccceeecccc
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q psy6935 762 GSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLV 841 (1575)
Q Consensus 762 ~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l 841 (1575)
...+...|.+++..|+.+........... |...+.++..-.......+.. ....+...-..+..+
T Consensus 164 --~~dL~~~L~eiR~~ye~~~~~~~~e~e~~--------y~~k~~~l~~~~~~~~~~~~~-----~~~E~~~~r~~~~~l 228 (312)
T PF00038_consen 164 --SSDLSAALREIRAQYEEIAQKNREELEEW--------YQSKLEELRQQSEKSSEELES-----AKEELKELRRQIQSL 228 (312)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred --cccchhhhhhHHHHHHHHHhhhhhhhhhh--------cccccccccccccccccccch-----hHhHHHHHHhhhhHh
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 842 EADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLH 905 (1575)
Q Consensus 842 ~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~~~ 905 (1575)
..++.........|......+-.............+..+......+...+.......+..+...
T Consensus 229 ~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K 292 (312)
T PF00038_consen 229 QAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVK 292 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.43 E-value=6.7e+02 Score=29.11 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q psy6935 417 ALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGES-QTLQQFSRDADEMENWIAEKLQLATEESYKD 495 (1575)
Q Consensus 417 ~l~~~~~~L~~~~~~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~~-~~~~~f~~~~~el~~Wl~~~~~~l~~~~~~d 495 (1575)
.|......+-..+|.....++.++..+...-......+.+....|... ..+........++..=|.+++..+....+-+
T Consensus 190 ~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 190 QLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344444444445555666777777777777777777777777777764 5667777777777777777777776334445
Q ss_pred hhHHHHHHHHHHHHH
Q psy6935 496 PANIQSKHQKHQAFE 510 (1575)
Q Consensus 496 ~~~~~~~l~~~~~l~ 510 (1575)
...+..+..++..++
T Consensus 270 ~~Ei~~Lk~~~~~Le 284 (312)
T smart00787 270 FKEIEKLKEQLKLLQ 284 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555443
No 175
>PF14658 EF-hand_9: EF-hand domain
Probab=39.30 E-value=24 Score=29.70 Aligned_cols=28 Identities=21% Similarity=0.442 Sum_probs=25.0
Q ss_pred HHHHHhcccCCCCC-CcccHHHHHHHHHH
Q psy6935 1495 EFSMMFKHFDKDKS-GKLNQTEFKSCLRA 1522 (1575)
Q Consensus 1495 ~~~~~F~~~D~~~~-g~i~~~el~~~l~~ 1522 (1575)
++....+.+|++|. |.|+.+.|..+|+.
T Consensus 36 ~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 36 ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 67888899999999 99999999998864
No 176
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=38.01 E-value=3.9e+02 Score=25.97 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------c------CCCCCchHHHHHHHHHHHHHHHHHHH
Q psy6935 388 DSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIA-------A------DHYAAKPIDDKRKQVLDRWRLLKEAL 454 (1575)
Q Consensus 388 ~~~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~-------~------~~~~~~~i~~~l~~L~~rw~~l~~~~ 454 (1575)
+++...++.+......+..++...+..+..|...-+.+-+ . .......++..+..++.||+.+...+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666666666666666666666665544433322 0 11234677888888888888888888
Q ss_pred HHHHHHHHh
Q psy6935 455 IEKRSRLGE 463 (1575)
Q Consensus 455 ~~r~~~L~~ 463 (1575)
.++....++
T Consensus 92 GEK~E~veE 100 (120)
T PF12325_consen 92 GEKSEEVEE 100 (120)
T ss_pred cchHHHHHH
Confidence 887777665
No 177
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.78 E-value=1.2e+03 Score=31.77 Aligned_cols=668 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHH
Q psy6935 730 HQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANK-QRTYIA-AVKD 807 (1575)
Q Consensus 730 ~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~-~~~f~~-~l~~ 807 (1575)
...|..-+--.++.++.++. ..|.....|-..+-.+.. ++.+...+.+....+..... ...... ....
T Consensus 131 ~~~f~~~v~l~QGe~~~fl~---------~~~~er~~il~~l~~l~~-~e~~~~~l~e~~~~~~~~~e~l~~~~~~~~e~ 200 (908)
T COG0419 131 KDTFTRSVYLPQGEFDAFLK---------SKPKERKEILDELFGLEK-YEKLSELLKEVIKEAKAKIEELEGQLSELLED 200 (908)
T ss_pred HHHHhHHheeccHhHHHHHh---------cCcHHHHHHHHHHhCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHH
Q psy6935 808 LDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERI 887 (1575)
Q Consensus 808 l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L 887 (1575)
...=+......+..... +..+...... ..+..++......+..+......+.. +...+..+.......
T Consensus 201 ~~~~~~~~~~e~~~~~~---l~e~~~~~~~-~~l~~e~e~l~~~~~el~~~~~~~~~--------~~~~l~~~~~~~~~~ 268 (908)
T COG0419 201 IEDLLEALEEELKELKK---LEEIQEEQEE-EELEQEIEALEERLAELEEEKERLEE--------LKARLLEIESLELEA 268 (908)
T ss_pred hHHHHHHHHHHHHHHHh---HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q psy6935 888 KNLAAHRQARLNEANT-LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGE 966 (1575)
Q Consensus 888 ~~~~~~R~~~Le~~~~-~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~ 966 (1575)
..........+...+. ...-...+.....=+.+....+.. +..........+..++.+...+......+..+.....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 346 (908)
T COG0419 269 LKIREEELRELERLLEELEEKIERLEELEREIEELEEELEG--LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELE 346 (908)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Q psy6935 967 KLMDVSNLGVPEIEQRLKLLNQAWSELKQLAANRGQKLDESL-TYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQG 1045 (1575)
Q Consensus 967 ~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~-~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~ 1045 (1575)
.+..........+......+......+...+........... ..............++.+....+..... ....+..
T Consensus 347 ~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~ 424 (908)
T COG0419 347 ELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK--ELEELER 424 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhHhHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q psy6935 1046 LLKKHDAFETDFSVHRDRCADICSAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTKLMDNSA----YLQFMW 1121 (1575)
Q Consensus 1046 ~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~Le~~~~----~~~f~~ 1121 (1575)
.+.+.......+.........-......+.. ....++.....+.... +..+..........|+..+. ...+..
T Consensus 425 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~CPvCg~~l~~~~--~~~~~~~~~~el~~l~~~i~~~~~~~~l~~ 501 (908)
T COG0419 425 ELEELEEEIKKLEEQINQLESKELMIAELAG-AGEKCPVCGQELPEEH--EKELLELYELELEELEEELSREKEEAELRE 501 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCCCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy6935 1122 KADVVESWIADKETHVKSEEYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLVASNHDQTPAIVKRHGDVIA 1201 (1575)
Q Consensus 1122 ~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~ 1201 (1575)
.+.++..-+....... ..-.+......+.+...+.... ..+..+......+. ...+...+..+..
T Consensus 502 e~~~l~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~e~l~-~~~e~~~~~~~~~~------~~~l~~e~~~le~ 566 (908)
T COG0419 502 EIEELEKELRELEEEL--------IELLELEEALKEELEEKLEKLE-NLLEELEELKEKLQ------LQQLKEELRQLED 566 (908)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHhHHHHhHHHHHHHHHHHH-HHHHHHHhHHHHHH------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhccccccccCCCCCCcCchhhHhHHH
Q psy6935 1202 RWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNKPQPLSRDMEMSLQDGRSYLEIPMPGNNVFSASSFNSWF 1281 (1575)
Q Consensus 1202 ~w~~L~~~~~~r~~~L~~a~~~~~~~~~l~~~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~~~~~~~~~~~~l~~WL 1281 (1575)
+-..+......+.... ......+...+....+..... .+..-+
T Consensus 567 ~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~------------------------------------~l~~~~ 609 (908)
T COG0419 567 RLQELKELLEELRLLR-TRKEELEELRERLKELKKKLK------------------------------------ELEERL 609 (908)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHH
Q ss_pred HhhhhccCCccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccHHHHHHHHHHHHHHHH
Q psy6935 1282 ENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYTWFTMEALEDTWRNLQKIIK 1361 (1575)
Q Consensus 1282 ~~~e~~L~~~~~~~~~~~v~~ll~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~~~ 1361 (1575)
...+..+..........+++............+. .+..++.+.... +..+...-..+...+.
T Consensus 610 ~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~-~~~~~~~~~~~~-----------------l~~~~~~~~~~~~~~~ 671 (908)
T COG0419 610 SQLEELLQSLELSEAENELEEAEEELESELEKLN-LQAELEELLQAA-----------------LEELEEKVEELEAEIR 671 (908)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhc---CCCCHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy6935 1362 ERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMME---GTGSLEQQLEAIKRKAAEVRSRRSDLKKIEDLGA 1438 (1575)
Q Consensus 1362 ~r~~~Le~a~~~~~~~~~~~~~f~~~~~~l~~Wl~~~~~~~~~---~~~~l~~ql~~lk~l~~ei~~~~~~l~~l~~l~~ 1438 (1575)
......+........... ...+...+..+..=|......+.. ....+.+....+..+..++......+..+..+..
T Consensus 672 ~~~~~~~~~~~~~~~~~~-~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 750 (908)
T COG0419 672 RELQRIENEEQLEEKLEE-LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELRE 750 (908)
T ss_pred HHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhcccCCcchhhhhhhhHHHHHHHHHhhccchHHhHhhhhcCCCCHHHHHHHHHHhcccCCCC
Q psy6935 1439 ILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNQSGVSEDALKEFSMMFKHFDKDK 1507 (1575)
Q Consensus 1439 ~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~~~ 1507 (1575)
.+.... ............+..........+........+.....+..+ ...|..+|.++
T Consensus 751 ~~~~~~-~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 809 (908)
T COG0419 751 KLGKAG-LRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNG---------GLVVVVYDGGE 809 (908)
T ss_pred HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcccc---------ceEEEEecCCC
No 178
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=36.29 E-value=6.9e+02 Score=28.37 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy6935 624 KHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE 687 (1575)
Q Consensus 624 ~~~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~ 687 (1575)
+-..+...+..+....+.++.....+. ..+.++..+++.+...+.+.+.....
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~-----------e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELR-----------EKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666555543 34445555555555554444443333
No 179
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=36.01 E-value=1.4e+02 Score=27.14 Aligned_cols=68 Identities=15% Similarity=0.366 Sum_probs=40.5
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHH-------cCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRA-------LGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~-------~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
+.++-.|+.+ .|++|.++..-|...|.. +|..+ ..+..+.-+...+... .+...|+-+.|+.+|...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~---aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGP---AFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GG---GGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccc---cccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 3467788877 789999999888877754 45543 1222456666677665 245679999999999865
Q ss_pred h
Q psy6935 1567 E 1567 (1575)
Q Consensus 1567 ~ 1567 (1575)
+
T Consensus 77 P 77 (90)
T PF09069_consen 77 P 77 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 180
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=35.85 E-value=69 Score=25.04 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1513 QTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1513 ~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
.+|...+|.+||| ++.++..++..+.. ...++.++.++-..
T Consensus 3 ~~d~~~AL~~LGy---------~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 3 LEDALEALISLGY---------SKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHHTTS----------HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred HHHHHHHHHHcCC---------CHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 3678889999999 67889999998864 34567888776544
No 181
>KOG0041|consensus
Probab=35.57 E-value=37 Score=35.06 Aligned_cols=30 Identities=27% Similarity=0.429 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhhh
Q psy6935 1537 PEFEAILDLVDPNRDGHVSLQEYMAFMISK 1566 (1575)
Q Consensus 1537 ~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 1566 (1575)
.++..++..+|.+.||+|++-|...+|-+.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 356789999999999999999999999654
No 182
>KOG2199|consensus
Probab=35.55 E-value=10 Score=43.19 Aligned_cols=52 Identities=35% Similarity=0.730 Sum_probs=47.0
Q ss_pred HHHHHhhhccccchhhhhcchhhHHHHHhhcCcchhHHhhccccccchhhHH
Q psy6935 148 ECVIALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVNDRQGFVPAAYV 199 (1575)
Q Consensus 148 ~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~ 199 (1575)
.++.++|+|..--..|++.+.+++-.+|....+.||+=+..+-.|+.|.++|
T Consensus 216 rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfV 267 (462)
T KOG2199|consen 216 RKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFV 267 (462)
T ss_pred hhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhh
Confidence 4688999999977789999999999999999999999999888999998776
No 183
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.49 E-value=4.8e+02 Score=26.28 Aligned_cols=96 Identities=22% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy6935 721 ANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA-NKQR 799 (1575)
Q Consensus 721 ~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~-~~~~ 799 (1575)
..|.+.-.+++.++.+|+.....+..+......--.... ..+.+..++..|....+.....+..-..+|.++ ..+.
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~---~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS---NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy6935 800 TYIAAVKDLDFWLGEVESLL 819 (1575)
Q Consensus 800 ~f~~~l~~l~~WL~~~e~~L 819 (1575)
.|.+.+..+..-....|..+
T Consensus 112 ~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 112 HFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHHHHHHHHhhHHHHHHHH
No 184
>KOG4666|consensus
Probab=35.25 E-value=67 Score=35.92 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=50.8
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRAL-GYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
..+...|..||.+++|.++..+.-..+.=+ |-.. ++.-++-.++.++.+-||.+.=.+|--++.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~-------t~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPV-------TPVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCC-------cHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 347899999999999999988876655443 3333 777888889999999999999888876664
No 185
>KOG0751|consensus
Probab=34.90 E-value=90 Score=36.95 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=36.7
Q ss_pred ccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q psy6935 1502 HFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFMIS 1565 (1575)
Q Consensus 1502 ~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 1565 (1575)
+-|.-.||-||.+||.. +.++-.. ++.-...++.-+|..++|.|+|++|..++..
T Consensus 82 iaD~tKDglisf~eF~a-fe~~lC~--------pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRA-FESVLCA--------PDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred hhhhcccccccHHHHHH-HHhhccC--------chHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 44566677788888753 3444332 3555667777788888888888888777654
No 186
>KOG1937|consensus
Probab=34.17 E-value=8.8e+02 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 543 VQARLASIADQWEFLTQKTTEKSLKLKEANK 573 (1575)
Q Consensus 543 i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~ 573 (1575)
...++..+...|++....+..+...|....+
T Consensus 305 ~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~ 335 (521)
T KOG1937|consen 305 LNKQMEELTQQWEDTRQPLLQKKLQLREELK 335 (521)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4556667778888777777766666655544
No 187
>KOG2871|consensus
Probab=33.25 E-value=30 Score=39.18 Aligned_cols=64 Identities=14% Similarity=0.325 Sum_probs=48.6
Q ss_pred HHHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHH-HHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1493 LKEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPE-FEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1493 ~~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
-+.++..|..+|+.++|+|+..-+..++..++..+ ++.+ +--+=..+|+.+-|.|-.+.|+.-.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v-------se~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV-------SEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc-------cCHHHHHHhcCccChhhcceEEeccccccc
Confidence 34579999999999999999999999999998544 4333 3333345788888888777776544
No 188
>KOG1510|consensus
Probab=32.46 E-value=4.1e+02 Score=25.98 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc---cccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhc
Q psy6935 470 FSRDADEMENWIAEKLQLAT---EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDK 533 (1575)
Q Consensus 470 f~~~~~el~~Wl~~~~~~l~---~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~~ 533 (1575)
|...+..|..=|..+-..+. ...|+.-.+...++.++..++.+.......+..+...|+.|+..
T Consensus 54 ~~~~~~~laa~i~~~akqId~LIdsLP~~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll~~ 120 (139)
T KOG1510|consen 54 FEEYAQLLAADIAKKAKQIDTLIDSLPGEEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLLEQ 120 (139)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445554555544444 56667777888999999999999998888899998888888653
No 189
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.93 E-value=1.1e+03 Score=29.09 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-CCCCCCCHHHHH
Q psy6935 1012 HFLAKVEEEEAWISEKQQLLS-VEDYGDTMAAVQ 1044 (1575)
Q Consensus 1012 ~f~~~~~el~~Wl~e~e~~l~-~~~~~~d~~~~~ 1044 (1575)
+|-..-.++..-|.+++.... .-+|..+.+.+.
T Consensus 510 RYRs~~~~v~~~l~eAe~lF~~~~dY~~s~eia~ 543 (570)
T COG4477 510 RYRSRNAEVAKSLNEAERLFENAFDYDASFEIAS 543 (570)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 444445555555555555544 334444444333
No 190
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.43 E-value=1.2e+03 Score=29.56 Aligned_cols=289 Identities=10% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHhHhhHHHHHHHhhHHHHHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhcc
Q psy6935 679 IEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKR 758 (1575)
Q Consensus 679 ~~r~~~Le~~~~l~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~~~ 758 (1575)
.+|+..++....+..|.. +...+.++...+......-...+...-.+...+...+.........-...-+.-+...
T Consensus 150 ~er~~il~~l~~~~~~~~----~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l 225 (562)
T PHA02562 150 PARRKLVEDLLDISVLSE----MDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDEL 225 (562)
T ss_pred HhHHHHHHHHhCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q psy6935 759 QCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA-NKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKK 837 (1575)
Q Consensus 759 ~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~-~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~ 837 (1575)
.. ....+...+..++.....+.....+....|..+ .........+..+..-+.-.+..-..+.++.++... -..
T Consensus 226 ~~--~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~---~~~ 300 (562)
T PHA02562 226 VE--EAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEG---PDR 300 (562)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCc---HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy6935 838 HQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANT-LHQFFRDIADEES 916 (1575)
Q Consensus 838 ~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~-~~~f~~~~~~~~~ 916 (1575)
...+...+...+..+..+...-..+ .....+...+..+...+...+..++..+..... ......++..+..
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~~~--------~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAIDEL--------EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHH
Q psy6935 917 WIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLGVPEIEQRLKLLNQAWSELKQL 996 (1575)
Q Consensus 917 Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~ 996 (1575)
= .......+..+..++..+..++................+...+-. ...+..-+..++..-..+...
T Consensus 373 ~------------~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~-~~i~~~~l~~~n~~~~~~L~~ 439 (562)
T PHA02562 373 E------------FVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIK-ASIIKKYIPYFNKQINHYLQI 439 (562)
T ss_pred h------------hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy6935 997 A 997 (1575)
Q Consensus 997 ~ 997 (1575)
+
T Consensus 440 l 440 (562)
T PHA02562 440 M 440 (562)
T ss_pred h
No 191
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.16 E-value=1e+03 Score=28.21 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--cccCCChhHHHHHHHHHHHHHHHHHhcHHHHH
Q psy6935 469 QFSRDADEMENWIAEKLQLAT--EESYKDPANIQSKHQKHQAFEAELAANADRIQ 521 (1575)
Q Consensus 469 ~f~~~~~el~~Wl~~~~~~l~--~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~ 521 (1575)
.....+.++..=|+++...+. +....|-.-+...-+.+..++.||....-++.
T Consensus 298 ~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 298 ERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334444455555555555555 33333433344444445555566655544443
No 192
>KOG0751|consensus
Probab=29.05 E-value=68 Score=37.90 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=43.0
Q ss_pred HHHHHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCC-cccHHHHHHH
Q psy6935 1494 KEFSMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDG-HVSLQEYMAF 1562 (1575)
Q Consensus 1494 ~~~~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 1562 (1575)
+--..+|+..|+.++|+||.-+|.+.+.....-+ ....++..+-.+..+++| +++|..|..+
T Consensus 179 E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~-------lt~~v~~nlv~vagg~~~H~vSf~yf~af 241 (694)
T KOG0751|consen 179 EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL-------LTPFVEENLVSVAGGNDSHQVSFSYFNAF 241 (694)
T ss_pred HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc-------CCHHHhhhhhhhcCCCCccccchHHHHHH
Confidence 3357899999999999999999999988775544 445666655555433333 5666555443
No 193
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.51 E-value=1.3e+03 Score=29.24 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy6935 769 ARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADIQAH 848 (1575)
Q Consensus 769 ~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~ 848 (1575)
....+++..|......+..+...|........|...+..+.. .--.++..+....++++.+..++..-
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~------------~~ik~p~~i~~~~~e~d~lk~e~~~~ 231 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK------------KDIKNPLELQKIKEEFDKLKKEGKAD 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh------------ccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666433334556666665554 12356777888888888888888776
Q ss_pred HHHHHHHHHH
Q psy6935 849 DDRIKDMNGQ 858 (1575)
Q Consensus 849 ~~~v~~l~~~ 858 (1575)
...+..+...
T Consensus 232 ~~~i~~~~~~ 241 (555)
T TIGR03545 232 KQKIKSAKND 241 (555)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 194
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=28.18 E-value=9.6e+02 Score=27.53 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=26.4
Q ss_pred HHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 851 RIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANTLHQFFRDIA 912 (1575)
Q Consensus 851 ~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~~~~f~~~~~ 912 (1575)
.+.--...|+.|+..+. .+..+...+...+....+.+..-+..|-.--.+-+||....
T Consensus 77 DLelaA~iGqsLl~~N~----~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ 134 (306)
T PF04849_consen 77 DLELAARIGQSLLEQNQ----DLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDD 134 (306)
T ss_pred hHHHHHHHhHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHh
Confidence 34444455666665543 23344444444444444444444444433334445555433
No 195
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.46 E-value=1.4e+03 Score=29.33 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=59.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhccC---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 492 SYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLIDKRQ---CVGSEEAVQARLASIADQWEFLTQKTTEKSLKL 568 (1575)
Q Consensus 492 ~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~~L~~~~~---~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L 568 (1575)
..+|-..+...+.+-+.++..+...+..|..|....-.|...-. ....+ +..++..+...|..+...+..+...+
T Consensus 148 lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~ke--L~~kl~~l~~~l~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 148 LQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKE--LQKKLGELQEKLHNLKEKLELKSQEA 225 (617)
T ss_pred hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34566677777888888999999889999888877655532211 12223 88899999999999999988777666
Q ss_pred HHHHHHH
Q psy6935 569 KEANKQR 575 (1575)
Q Consensus 569 ~~~~~~r 575 (1575)
...-.++
T Consensus 226 ~~Lq~q~ 232 (617)
T PF15070_consen 226 QSLQEQR 232 (617)
T ss_pred HHHHHHH
Confidence 6655555
No 196
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=27.36 E-value=9.1e+02 Score=27.00 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=71.1
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 925 VGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL-GVPEIEQRLKLLNQAWSELKQLAANRGQK 1003 (1575)
Q Consensus 925 ~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~-~~~~i~~~l~~L~~~w~~L~~~~~~r~~~ 1003 (1575)
.....++.+-..+--++.+.+.+..++...+... -.++...+. -..-.+..++.+....+.+...+..+...
T Consensus 42 ~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~-------peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~Knek 114 (268)
T PF11802_consen 42 IGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRT-------PEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEK 114 (268)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcC-------CCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666777777777776544322 223322211 12335788888999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhhccCCCCCC
Q psy6935 1004 LDESLTY-QHFLAKVEEEEAWISEKQQLLSVEDYGD 1038 (1575)
Q Consensus 1004 L~~~~~~-~~f~~~~~el~~Wl~e~e~~l~~~~~~~ 1038 (1575)
|...+.. +++..+..++..-|......+.+.....
T Consensus 115 Lke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~ 150 (268)
T PF11802_consen 115 LKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETF 150 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9998854 7888888888888887777776544433
No 197
>COG5570 Uncharacterized small protein [Function unknown]
Probab=26.80 E-value=2e+02 Score=22.72 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=29.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHHHHHHHH
Q psy6935 59 TSVQNLQKKHALLEADVASHLDRIESVKAATEQFLEHYGKDEDSSEALLKKHEALVSDLEAFG 121 (1575)
Q Consensus 59 ~~v~~~l~kh~~le~ei~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~ll~~~~~~~~~~~~~~ 121 (1575)
+++..+-+||..|+.+|.. .+ ..-|.|......|-.+...+-++|..+.
T Consensus 5 shl~eL~kkHg~le~ei~e-------------a~-n~Ps~dd~~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 5 SHLAELEKKHGNLEREIQE-------------AM-NSPSSDDLAIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHhhchHHHHHHH-------------Hh-cCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788999999999873 12 2224444445555556555555554443
No 198
>KOG3449|consensus
Probab=26.69 E-value=1.9e+02 Score=27.04 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=44.6
Q ss_pred HHHhcccCCCCCCcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCCCCCCcccHHHHHHHH
Q psy6935 1497 SMMFKHFDKDKSGKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDPNRDGHVSLQEYMAFM 1563 (1575)
Q Consensus 1497 ~~~F~~~D~~~~g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 1563 (1575)
-.+|=.++..++-..+..+++.+|.+.|... .++.++.+|..+. |+ +.+|.+.-=
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~-------d~e~i~~visel~----GK-~i~ElIA~G 58 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEI-------DDERINLVLSELK----GK-DIEELIAAG 58 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCccc-------CHHHHHHHHHHhc----CC-CHHHHHHHh
Confidence 4456667778888999999999999999999 8888999999885 33 777776543
No 199
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.50 E-value=1e+03 Score=27.31 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 979 IEQRLKLLNQAWSELKQLAANRGQKLD 1005 (1575)
Q Consensus 979 i~~~l~~L~~~w~~L~~~~~~r~~~L~ 1005 (1575)
+...+.+|..+|..+.....+.+..|.
T Consensus 274 L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 274 LQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777666666655555443
No 200
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=26.47 E-value=45 Score=33.05 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=28.9
Q ss_pred CcccHHHHHHHHHHcCCCCCCCCCCCChHHHHHHHHHhCC-------CCCCcccHHHHHHHHhhhhh
Q psy6935 1509 GKLNQTEFKSCLRALGYDLPMVEEGQPDPEFEAILDLVDP-------NRDGHVSLQEYMAFMISKET 1568 (1575)
Q Consensus 1509 g~i~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~~~~~ 1568 (1575)
|.|+..||...=.-+-+ +...+..++..|.. +.++.|+|+-|..||.....
T Consensus 6 ~~lsp~eF~qLq~y~ey---------s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY---------STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp S-S-HHHHHHHHHHHHH-------------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eccCHHHHHHHHHHHHH---------HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 66777777664433322 33457777777742 23457999999999987654
No 201
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=25.39 E-value=4.1 Score=31.99 Aligned_cols=44 Identities=41% Similarity=0.983 Sum_probs=34.9
Q ss_pred HhhhccccchhhhhcchhhHHHHHhhcCcchhHHhhc--cccccch
Q psy6935 152 ALYDYTEKSPREVSMKKSDVLTLLNSNNKDWWKVEVN--DRQGFVP 195 (1575)
Q Consensus 152 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~e~~--~~~~~~~ 195 (1575)
++|+|....+.|+.+..++...++......||.+... +.++++|
T Consensus 2 Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP 47 (48)
T PF00018_consen 2 ALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVP 47 (48)
T ss_dssp ESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEee
Confidence 4678888888899999999888888888889988775 3677766
No 202
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=24.96 E-value=1.5e+03 Score=28.56 Aligned_cols=174 Identities=9% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHhhccchhchhhHHHHHHHHHHHHHhhcc--ccCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHh----
Q psy6935 576 TYIAAVKDLPYFSKKDCEQAENWMSAREAFLNA--EEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQL---- 649 (1575)
Q Consensus 576 ~~L~q~~~~~~f~~~~~~~l~~wL~~~E~~L~~--~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~a~~L---- 649 (1575)
.++.+.-.+..+. ..+..+..-|..+|..|.. .+++.--.++..+..+-..+...+...+.....|....+.+
T Consensus 8 dy~~e~~~~~~Lh-~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP 86 (508)
T PF04129_consen 8 DYLKESENFADLH-NQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPP 86 (508)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCH
Q ss_pred -----hhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH--HHHHhhHHHHHHHHHHHHhhhhccCCCChhh
Q psy6935 650 -----IAADHYAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTL--QQFSRDADEMENWIAEKLQLATEESYKDPAN 722 (1575)
Q Consensus 650 -----~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~l--~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~ 722 (1575)
+-.++.+...+...+.-+...-.........-.....+.... .--...++.+.+|+-.+......|. .+...
T Consensus 87 ~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~-tn~q~ 165 (508)
T PF04129_consen 87 DLIRSICEGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPK-TNSQI 165 (508)
T ss_pred HHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CchHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy6935 723 IQSKHQKHQAFEAELAANADRIQSVLAMG 751 (1575)
Q Consensus 723 l~~~l~~~q~l~~el~~~~~~l~~l~~~g 751 (1575)
+|..+-+++.+-.=|..|.|.+..=+..+
T Consensus 166 iQ~~LLk~~~~~~FL~~~~~~~a~El~~~ 194 (508)
T PF04129_consen 166 IQQVLLKYKELFQFLKKHSPELAKELRQA 194 (508)
T ss_pred HHHHHHhhHHHHHHHHHhhHHHHHHHHHH
No 203
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=24.95 E-value=1.1e+03 Score=26.96 Aligned_cols=91 Identities=14% Similarity=0.254 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy6935 839 QLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANT-LHQFFRDIADEESW 917 (1575)
Q Consensus 839 ~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~-~~~f~~~~~~~~~W 917 (1575)
..+..++..+...-+.++..+..+ ...+..+..+.+.+...+..-+..-..... +...+..+..+..-
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~-----------~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVREL-----------REKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665554 345555556666666655554444443332 33444444433322
Q ss_pred HHHhhhhhcCCCCCCCHHHHHHHHHHHHH
Q psy6935 918 IKEKKLLVGSDDYGRDLTGVQNLKKKHKR 946 (1575)
Q Consensus 918 l~e~~~~~~~~~~~~~~~~~~~~l~k~~~ 946 (1575)
++... ..|.++..++.-+.++.-
T Consensus 99 ~~~~~------~~~~~~~~ler~i~~Le~ 121 (294)
T COG1340 99 RNEFN------LGGRSIKSLEREIERLEK 121 (294)
T ss_pred hhhhh------ccCCCHHHHHHHHHHHHH
Confidence 22111 125566666555554443
No 204
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.73 E-value=1.6e+03 Score=28.93 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 937 VQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL---GVPEIEQRLKLLNQAWSELKQLAANRGQ 1002 (1575)
Q Consensus 937 ~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~---~~~~i~~~l~~L~~~w~~L~~~~~~r~~ 1002 (1575)
+..-+...+.|...+...+..+-.+...--.|...-.. -...+..++..+...|..+...+..+..
T Consensus 155 ~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~q 223 (617)
T PF15070_consen 155 ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQ 223 (617)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33334444555555555555555544443223211111 1235677788888888888777776644
No 205
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.62 E-value=1.7e+03 Score=29.12 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q psy6935 1011 QHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSAGN 1072 (1575)
Q Consensus 1011 ~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~ 1072 (1575)
..+...+.+++.=|.+....+...+ +.+.+..+..+...+..++......+..+.....
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~---~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIP---SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666665322 2346666666666667777666666665555443
No 206
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=23.95 E-value=9.6e+02 Score=26.12 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1196 HGDVIARWQKLLGDSNARKQRLLRMQEQFRQIED 1229 (1575)
Q Consensus 1196 ~~~l~~~w~~L~~~~~~r~~~L~~a~~~~~~~~~ 1229 (1575)
+++++-.|++|......+...|.+.......+-+
T Consensus 5 ~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~d 38 (219)
T PF08397_consen 5 MEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFD 38 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666555544443333
No 207
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=23.80 E-value=26 Score=46.83 Aligned_cols=723 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHhhcc--ccCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q psy6935 366 RDCEQAENWMSAREAFLNA--EEVDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQV 443 (1575)
Q Consensus 366 ~~~~~l~~WL~~~e~~l~~--~~~~~~~~~~~~~l~~~~~l~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L 443 (1575)
.....+..-|..++..+.. ..+-.....+..+.++.+.++..|...+..+++=...-...-.. ...+...+..|
T Consensus 4 ~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~----r~dL~~ELe~l 79 (859)
T PF01576_consen 4 RQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQ----RRDLSEELEEL 79 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhcHHHHHH
Q psy6935 444 LDRWRLLKEALIEKRSRLGES-QTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAELAANADRIQS 522 (1575)
Q Consensus 444 ~~rw~~l~~~~~~r~~~L~~~-~~~~~f~~~~~el~~Wl~~~~~~l~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~ 522 (1575)
..+..............-..- ..+..+...+.+...--......|.......+..+..++..++-.+..+..-...+..
T Consensus 80 ~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~ 159 (859)
T PF01576_consen 80 KERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEA 159 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhchhhHHHHHHHHHHH
Q psy6935 523 VLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEANKQRTYIAAVKDLPYFSKKDCEQAENWMSAR 602 (1575)
Q Consensus 523 l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~~~~r~~L~q~~~~~~f~~~~~~~l~~wL~~~ 602 (1575)
=......=+......... .......+......+...+.+-...+...-.....|. .++..+. ..+++...-+...
T Consensus 160 e~~dL~~~l~~~~k~k~~--~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~--~E~~eL~-~qLee~e~~~~~l 234 (859)
T PF01576_consen 160 ELDDLQAQLDSLQKAKQE--AEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQ--SENSELT-RQLEEAESQLSQL 234 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH--HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHH
Q ss_pred HHhhcccc--CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q psy6935 603 EAFLNAEE--VDSKTDNVEALIKKHEDFDKAINAHEEKIGALQTLADQLIAADHYAAKPIDDKRKQVLDRWRLLKEALIE 680 (1575)
Q Consensus 603 E~~L~~~~--~~~~~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~a~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~ 680 (1575)
........ +...-..+....+....+...+......++.+......-..+....-..+...-..|..--..+......
T Consensus 235 ~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~ 314 (859)
T PF01576_consen 235 QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ 314 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Q ss_pred HHHHhHhhH-HHHHHHhhHHHHHHHHHHHHhhhh---ccCCCChhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHh
Q psy6935 681 KRSRLGESQ-TLQQFSRDADEMENWIAEKLQLAT---EESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQNLID 756 (1575)
Q Consensus 681 r~~~Le~~~-~l~~f~~~~~el~~Wl~e~~~~~~---~~~~~d~~~l~~~l~~~q~l~~el~~~~~~l~~l~~~g~~L~~ 756 (1575)
+...|+.+. .+..=+.++.+-..=...+...+. ....++..++...+.+.......+...+-.++..+..-..-+.
T Consensus 315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~ 394 (859)
T PF01576_consen 315 RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q psy6935 757 KRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA-NKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLI 835 (1575)
Q Consensus 757 ~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~-~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l 835 (1575)
.... ...........+...-..|...+.+-...+... -.-..+...+.++..-++.....+....-. ...+-
T Consensus 395 ~~~~--e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~-----kr~LE 467 (859)
T PF01576_consen 395 ELQA--ERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKA-----KRRLE 467 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH--HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHH-----HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy6935 836 KKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQARLNEANT-LHQFFRDIADE 914 (1575)
Q Consensus 836 ~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~~Le~~~~-~~~f~~~~~~~ 914 (1575)
.....+...+......+.........|...-..-...+...+..=..-+..+...+......|+..+. =...-..+...
T Consensus 468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~ 547 (859)
T PF01576_consen 468 QEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALRE 547 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCC---ChhHHHHHHHHHHHHHH
Q psy6935 915 ESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL---GVPEIEQRLKLLNQAWS 991 (1575)
Q Consensus 915 ~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~---~~~~i~~~l~~L~~~w~ 991 (1575)
-.=|.....-+... +...........+.++.++..|...+..++........+.....+ ....++..+..+.....
T Consensus 548 kkKLE~~l~eLe~~-ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~ 626 (859)
T PF01576_consen 548 KKKLESDLNELEIQ-LDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALE 626 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH-HHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc--CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy6935 992 ELKQLAANRGQKLDESL-TYQHFLAKVEEEEAWISEKQQLLS--VEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADIC 1068 (1575)
Q Consensus 992 ~L~~~~~~r~~~L~~~~-~~~~f~~~~~el~~Wl~e~e~~l~--~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~ 1068 (1575)
.....-..-...+..+. .+..+......+..=....+..+. ..++......+.....+++....++......+..-.
T Consensus 627 ~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq 706 (859)
T PF01576_consen 627 QAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQ 706 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q ss_pred HhhhHhHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1069 SAGNKLIEAKNHHADSITQRCQQLQLKLDNLMALATKRKTK 1109 (1575)
Q Consensus 1069 ~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~ 1109 (1575)
.....+-. ....+...+..|..+...+-..+......
T Consensus 707 ~~~~~le~----~k~~LE~q~keLq~rl~e~E~~~~~~~k~ 743 (859)
T PF01576_consen 707 DHNQHLEK----EKKALERQVKELQARLEEAEQSALKGGKK 743 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccccc
No 208
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=23.52 E-value=56 Score=30.85 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q psy6935 1535 PDPEFEAILDLVDPNRDGHVSLQEYMAFMI 1564 (1575)
Q Consensus 1535 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 1564 (1575)
++++|+.+...+-.|..|++.|-+|+.-+.
T Consensus 5 tDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 5 TDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp -HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 899999999999999999999999998665
No 209
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=23.24 E-value=2.3e+03 Score=30.20 Aligned_cols=761 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHhhHHHHHHHHHHHHhhhhccCCCChhhHHHHHHHHHHHHHHH
Q psy6935 658 KPIDDKRKQVLDRWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAFEAEL 737 (1575)
Q Consensus 658 ~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~l~~f~~~~~el~~Wl~e~~~~~~~~~~~d~~~l~~~l~~~q~l~~el 737 (1575)
......+..+......+...+.......+...........+..+..++........ ...+...-..+..+..++
T Consensus 175 ~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~------~~~l~~~~~~~~~~~~~~ 248 (1179)
T TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALL------VLRLEELREELEELQEEL 248 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHhHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy6935 738 AANADRIQSVLAMGQNLIDKRQCVGSEEAVQARLASIADQWEFLTQKTTEKSLKLKEA-NKQRTYIAAVKDLDFWLGEVE 816 (1575)
Q Consensus 738 ~~~~~~l~~l~~~g~~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~r~~~L~~~-~~~~~f~~~l~~l~~WL~~~e 816 (1575)
......+..+...-..+-. ....+...+..+...+..+...+..-...+... .....+...+..+..-+....
T Consensus 249 ~~~~~~~~~~~~~~~~~~~------~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~ 322 (1179)
T TIGR02168 249 KEAEEELEELTAELQELEE------KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 817 SLLTSEDSGKDLASVQNLIKKHQLVEADIQAHDDRIKDMNGQADSLIDSGQFDASSIQEKRQSINERYERIKNLAAHRQA 896 (1575)
Q Consensus 817 ~~L~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~~~R~~ 896 (1575)
..+.. ....+......+..+..++......+..+......+.. ....+...+..+...+..+......-..
T Consensus 323 ~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 393 (1179)
T TIGR02168 323 AQLEE-----LESKLDELAEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELEEQLETLRSKVAQLEL 393 (1179)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCCC
Q psy6935 897 RLNEANT-LHQFFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNLG 975 (1575)
Q Consensus 897 ~Le~~~~-~~~f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~ 975 (1575)
.+..... .......+..+..=+......+....-.-.-..+..+......+..++......+..+...-..+
T Consensus 394 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l------- 466 (1179)
T TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL------- 466 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---------------------
Q psy6935 976 VPEIEQRLKLLNQAWSELKQLAANRGQKLDESLTYQHFLAKVEEEEAWISEKQQLLSVE--------------------- 1034 (1575)
Q Consensus 976 ~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~e~e~~l~~~--------------------- 1034 (1575)
...+..+...+..+......-...+...-.+..-..........+-.....+...
T Consensus 467 ----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~v~~~i~v~~~~~~~~g~~~~li~~~~~~~~a~~~~ 542 (1179)
T TIGR02168 467 ----REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAA 542 (1179)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHhcccccCCCccchhceeeeChhHHHHHHHH
Q ss_pred -------CCCCCHHHHHHHHHHHHH----------------------------------------------HHH--HHHH
Q psy6935 1035 -------DYGDTMAAVQGLLKKHDA----------------------------------------------FET--DFSV 1059 (1575)
Q Consensus 1035 -------~~~~d~~~~~~~l~~~~~----------------------------------------------l~~--el~~ 1059 (1575)
-+..+...+...+..... +.. ....
T Consensus 543 ~g~~~~~ivv~~~~~a~~~~~~l~~~~~g~~~~l~l~~i~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~ 622 (1179)
T TIGR02168 543 LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622 (1179)
T ss_pred HHHHhcCeEECCHHHHHHHHHHhcccCCCcEEEeeccccccccccccchhhccccCchhHHHHHHhcccHhHHHHHHHHh
Q ss_pred hHHHHHHHHHhhhHhHhccCCCc----------------------------------hhHHHHHHHHHHHHHHHHHHHHH
Q psy6935 1060 HRDRCADICSAGNKLIEAKNHHA----------------------------------DSITQRCQQLQLKLDNLMALATK 1105 (1575)
Q Consensus 1060 ~~~~v~~l~~~~~~L~~~~~~~~----------------------------------~~i~~~l~~L~~~w~~L~~~~~~ 1105 (1575)
....+-.....+..+.....++. ..+...+..+...+..+......
T Consensus 623 ~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~ 702 (1179)
T TIGR02168 623 GGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAE 702 (1179)
T ss_pred CCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhccc--ccCCCHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHH
Q psy6935 1106 RKTKLMDNSAYL-QFMWKADVVESWIADKETHVKSE--EYGRDLSTVQTLLTKQETFDAGLHAFEHEGIQNITTLKDQLV 1182 (1575)
Q Consensus 1106 r~~~Le~~~~~~-~f~~~~~~l~~Wl~~~e~~l~~~--~~~~d~~~~~~l~~~~~~f~~el~~~~~~~~~~~~~~~~~L~ 1182 (1575)
....+....... .....+..+..-+......+... ....--..+..+-.....+..++.... ..+..+...-..+.
T Consensus 703 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~ 781 (1179)
T TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE-ERLEEAEEELAEAE 781 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhhcccccc
Q psy6935 1183 ASNHDQTPAIVKRHGDVIARWQKLLGDSNARKQRLLRMQEQFRQIEDLYLTFAKKASSFNKPQPLSRDMEMSLQDGRSYL 1262 (1575)
Q Consensus 1183 ~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~r~~~L~~a~~~~~~~~~l~~~f~~~~~~~~~~~~~~~d~~~~l~~~r~~~ 1262 (1575)
.. ...+...+..+......+...+......+............-.........
T Consensus 782 ~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~----------------------- 834 (1179)
T TIGR02168 782 AE----IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA----------------------- 834 (1179)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q ss_pred ccCCCCCCcCchhhHhHHHHhhhhccCCccccCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccccCCCCCC
Q psy6935 1263 EIPMPGNNVFSASSFNSWFENAEEDLTDPVRCNSIEEIRALREAHAQFQASLSSAQADFEALAALDQQIKSFNVGPNPYT 1342 (1575)
Q Consensus 1263 ~~~~~~~~~~~~~~l~~WL~~~e~~L~~~~~~~~~~~v~~ll~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 1342 (1575)
.+..=+...+..+.... ..+..+-.....++..+......+..+......+..
T Consensus 835 -------------~l~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~--------- 887 (1179)
T TIGR02168 835 -------------ATERRLEDLEEQIEELS-----EDIESLAAEIEELEELIEELESELEALLNERASLEE--------- 887 (1179)
T ss_pred -------------HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---------
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHHHHHHhhhcCCCCHHHHHHH-------
Q psy6935 1343 WFTMEALEDTWRNLQKIIKERDIELAKEATRQDENDALRKEFAKHANAFHQWLTETRTSMMEGTGSLEQQLEA------- 1415 (1575)
Q Consensus 1343 ~~~~~~l~~~w~~l~~~~~~r~~~Le~a~~~~~~~~~~~~~f~~~~~~l~~Wl~~~~~~~~~~~~~l~~ql~~------- 1415 (1575)
.+..+......+...+..-...+................+......+..=+.+....+.............
T Consensus 888 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1179)
T TIGR02168 888 --ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED 965 (1179)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHhhcccccc
Q ss_pred -HHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhcccCCcchhhhhhhhHHHHHHHHHhhccchHHhHh---hhhcCCCCHH
Q psy6935 1416 -IKRKAAEVRSRRSDLKKIEDLGAILEEHLILDNRYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQ---ARNQSGVSED 1491 (1575)
Q Consensus 1416 -lk~l~~ei~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~ 1491 (1575)
+..+...|....+.++....+.....+.+.+-..- ..+|....+.+...+..+...... .+ ...+..+...
T Consensus 966 ~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q----~~dL~~~~~~L~~~i~~i~~~~~~-~f~~~~~~F~~v~~~ 1040 (1179)
T TIGR02168 966 DEEEARRRLKRLENKIKELGPVNLAAIEEYEELKER----YDFLTAQKEDLTEAKETLEEAIEE-IDREARERFKDTFDQ 1040 (1179)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcccCCCCCCccc
Q psy6935 1492 ALKEFSMMFKHFDKDKSGKLN 1512 (1575)
Q Consensus 1492 ~~~~~~~~F~~~D~~~~g~i~ 1512 (1575)
--.-|..+|..+=..|++++.
T Consensus 1041 f~~~F~~lf~~~~~~~~~~~~ 1061 (1179)
T TIGR02168 1041 VNENFQRVFPKLFGGGEAELR 1061 (1179)
T ss_pred HHHHHHHHHHHHhCCCeEEEE
No 210
>KOG3958|consensus
Probab=23.24 E-value=1.1e+03 Score=26.48 Aligned_cols=161 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhcc---------ccCCCC--HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHH--cCCCC
Q psy6935 367 DCEQAENWMSAREAFLNA---------EEVDSK--TDNVEALIKKHEDFDKA-INAHEEKIGALQTLADQLIA--ADHYA 432 (1575)
Q Consensus 367 ~~~~l~~WL~~~e~~l~~---------~~~~~~--~~~~~~~l~~~~~l~~~-l~~~~~~v~~l~~~~~~L~~--~~~~~ 432 (1575)
.+..+..-|.+.|..+.. ..+++. ++.++.+.-+...+.-+ +...+.++.++....+.+.+ .+...
T Consensus 192 kVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~~ 271 (371)
T KOG3958|consen 192 KVAELEKRLTELETVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKASVE 271 (371)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q ss_pred CchHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHhccccCCChhHHHHHHHHHHHH
Q psy6935 433 AKPIDDKRKQVLD---RWRLLKEALIEKRSRLGESQTLQQFSRDADEMENWIAEKLQLATEESYKDPANIQSKHQKHQAF 509 (1575)
Q Consensus 433 ~~~i~~~l~~L~~---rw~~l~~~~~~r~~~L~~~~~~~~f~~~~~el~~Wl~~~~~~l~~~~~~d~~~~~~~l~~~~~l 509 (1575)
.....+++.+|-+ ||.-++..+-+-.+++.....++.+-..+..+..-|+.+..++......+.+-+.. -...+
T Consensus 272 Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~q~~i~~sl~~n~ell~~---vqtt~ 348 (371)
T KOG3958|consen 272 DADTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTTQQMIANSLKDNTELLTQ---VQTTM 348 (371)
T ss_pred cchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH---HHHHH
Q ss_pred HHHHHhcHHHHHHHHHHHHHH
Q psy6935 510 EAELAANADRIQSVLAMGQNL 530 (1575)
Q Consensus 510 ~~el~~~~~~l~~l~~~g~~L 530 (1575)
..++..-...+..+......|
T Consensus 349 ~qnl~tV~~k~a~ie~rva~l 369 (371)
T KOG3958|consen 349 RQNLATVEGKFASIEERVAKL 369 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
No 211
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=21.63 E-value=2e+03 Score=28.99 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy6935 771 LASIADQWEFL 781 (1575)
Q Consensus 771 l~~l~~~w~~L 781 (1575)
+..+..+...+
T Consensus 290 i~~L~~~l~~l 300 (754)
T TIGR01005 290 IQRLRERQAEL 300 (754)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 212
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=20.92 E-value=1.1e+03 Score=25.75 Aligned_cols=136 Identities=11% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHhhHHHHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHHHHHHHHHH
Q psy6935 409 NAHEEKIGALQTLADQLIAADH-YAAKPIDDKRKQVLDRWRLLKEALIEKRSRLGE--SQTLQQFSRDADEMENWIAEKL 485 (1575)
Q Consensus 409 ~~~~~~v~~l~~~~~~L~~~~~-~~~~~i~~~l~~L~~rw~~l~~~~~~r~~~L~~--~~~~~~f~~~~~el~~Wl~~~~ 485 (1575)
..+......+...|..+...++ .....+..-+..+.+.+..+...........-. ...+..|.+.+..+..-+....
T Consensus 40 ~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~ 119 (224)
T cd07623 40 NHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERV 119 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566665555222 234567778888888777777665543332221 1233444444444443333322
Q ss_pred HHhccccCCChhHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH--HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy6935 486 QLATEESYKDPANIQSKHQKHQAFEAELAANADRIQSVLAMGQ--NLIDKRQCVGSEEAVQARLASIADQWEFLTQKTT 562 (1575)
Q Consensus 486 ~~l~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~l~~l~~~g~--~L~~~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~ 562 (1575)
..+..++....++...+..+..+...|. .+-.... .-. ..+.+......+|+.+...+.
T Consensus 120 ---------------~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~-ev~--~~e~~~~~a~~~fe~is~~~k 180 (224)
T cd07623 120 ---------------KVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQ-EIK--EWEAKVDRGQKEFEEISKTIK 180 (224)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444444444444432221 0000000 001 145555666667777766665
No 213
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.88 E-value=1.4e+03 Score=26.77 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------hHhhhcCCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHH
Q psy6935 838 HQLVEADIQAHDDRIKDMNGQA--------DSLIDSGQFDASSIQEKRQSINERYERIKNLA--AHRQARLNEANT-LHQ 906 (1575)
Q Consensus 838 ~~~l~~ei~~~~~~v~~l~~~~--------~~L~~~~~~~~~~i~~~~~~l~~r~~~L~~~~--~~R~~~Le~~~~-~~~ 906 (1575)
++.|..-|..-+..+..+.... .....+++.....+..++..+.....-..... .=|...++.... +..
T Consensus 77 c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~ 156 (325)
T PF08317_consen 77 CRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEE 156 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhccCCC-ChhHHHHHHHH
Q psy6935 907 FFRDIADEESWIKEKKLLVGSDDYGRDLTGVQNLKKKHKRLEAELASHQPAIQNVQETGEKLMDVSNL-GVPEIEQRLKL 985 (1575)
Q Consensus 907 f~~~~~~~~~Wl~e~~~~~~~~~~~~~~~~~~~~l~k~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~-~~~~i~~~l~~ 985 (1575)
-...+..-..-|......+... +..+..++..+..++...+..... +..+.+ .-..++..+..
T Consensus 157 ~~~~L~~D~~~L~~~~~~l~~~--------~~~l~~~~~~L~~e~~~Lk~~~~e--------~~~~D~~eL~~lr~eL~~ 220 (325)
T PF08317_consen 157 NLELLQEDYAKLDKQLEQLDEL--------LPKLRERKAELEEELENLKQLVEE--------IESCDQEELEALRQELAE 220 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhh--------hhhcCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHH
Q psy6935 986 LNQAWSELKQLAANRGQKLDESL-TYQHFLAKVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFET 1055 (1575)
Q Consensus 986 L~~~w~~L~~~~~~r~~~L~~~~-~~~~f~~~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ 1055 (1575)
+...-......+......+.... ..........++..=|.+.+..+ ...-+-+...+..+..++..++.
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~-~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR-EECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHH
No 214
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.68 E-value=1.2e+03 Score=25.87 Aligned_cols=87 Identities=15% Similarity=0.248 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy6935 767 VQARLASIADQWEFLTQKTTEKSLKLKEA-NKQRTYIAAVKDLDFWLGEVESLLTSEDSGKDLASVQNLIKKHQLVEADI 845 (1575)
Q Consensus 767 i~~~l~~l~~~w~~L~~~~~~r~~~L~~~-~~~~~f~~~l~~l~~WL~~~e~~L~~~~~~~d~~~~~~~l~~~~~l~~ei 845 (1575)
+..-+..+......+...+......++.. .+..++...++++..-+...+..++. ..|......+......++..+
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA---VKDERELRALNIEIQIAKERI 105 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666777777777766 55788899999999999999888833 344444444444444444444
Q ss_pred HHHHHHHHHHH
Q psy6935 846 QAHDDRIKDMN 856 (1575)
Q Consensus 846 ~~~~~~v~~l~ 856 (1575)
.+....+..+.
T Consensus 106 ~~le~el~~l~ 116 (239)
T COG1579 106 NSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHH
Confidence 43333333333
No 215
>KOG0612|consensus
Probab=20.42 E-value=2.4e+03 Score=29.38 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy6935 1016 KVEEEEAWISEKQQLLSVEDYGDTMAAVQGLLKKHDAFETDFSVHRDRCADICSA 1070 (1575)
Q Consensus 1016 ~~~el~~Wl~e~e~~l~~~~~~~d~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~ 1070 (1575)
.+..+..||.+....|.+ ++..+-+....+.+..+....++...+..++..+..
T Consensus 718 k~e~~~~~i~~e~e~L~~-d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~ 771 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLSN-DYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISK 771 (1317)
T ss_pred HHHHHHHHHHHHHHHHhh-hhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777776666643 332222333333444444444444444444444443
Done!