BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6936
(1032 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FB2|A Chain A, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a.
pdb|3FB2|B Chain B, Crystal Structure Of The Human Brain Alpha Spectrin
Repeats 15 And 16. Northeast Structural Genomics
Consortium Target Hr5563a
Length = 218
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 142/192 (73%)
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 425
L RFL+D+RDL SW++ ++ ++S+DELAKDV GAEALLERHQEH+ EIDAR +F+
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485
GQ LL HYA+ +I++KL L+ ++ L W +RR +QC++LQLF+RD EQA+ W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAAD 545
A +EAFL+ ED GDSLDSVEALIKKHEDF+K++ QEEKI AL FA +LI HYA
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 546 DVAQRRDLLLKR 557
D++ RR+ +L R
Sbjct: 195 DISSRRNEVLDR 206
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 142/206 (68%), Gaps = 14/206 (6%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 667
L RFL+D+RDL SW++ ++ ++S+DELAKDV GAEALLERHQEH+ EIDAR +F+
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 668 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 727
GQ LL HYA+ +I++KL L+ ++ L W +RR +QC++LQLF+RD EQA+ W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 728 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDE 787
A +EAFL+ ED GDSLDSVEALIKKHEDF+K++ QEEK I AL
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEK--------------IAALQA 180
Query: 788 FATKLIEGQHYAADDVAQRRDLLLKR 813
FA +LI HYA D++ RR+ +L R
Sbjct: 181 FADQLIAAGHYAKGDISSRRNEVLDR 206
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 109/218 (50%), Gaps = 16/218 (7%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
LQ F D +W+ +S+++L + EAL+++H++ + A
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDA---------- 64
Query: 774 LLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
+ T Q A ++F +L+ HYA+ ++ Q+ D+L + RA L + +RR L+ +
Sbjct: 65 --RAGTFQ--AFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLE 120
Query: 834 FQQFERDCDETKSWVTEKLKFANDDNYLDPTN-LNGKVQKHQNFEQELNANKTRMDEITS 892
Q F RDC++ ++W + F N ++ D + + ++KH++F++ +N + ++ + +
Sbjct: 121 LQLFHRDCEQAENWXAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQA 180
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESL-ATATEKK 929
+L+ A HYA I R +++ W L A EK+
Sbjct: 181 FADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQXIEKR 218
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 1/197 (0%)
Query: 49 FQYFKRDADELESWIYE-KLQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDN 107
Q F D +L SWI + +SDE K+ T +A +++HQ E+ A + +
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 108 TGKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMFW 167
G++++ H+AS I ++ L Q L L F R C++ W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 168 INDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERE 227
+EAF+ ++ G L+ VE L +K ++F K + QE ++ + AD+L+ GH +
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 228 TIVRRKEELSEAWMRLK 244
I R+ E+ + W RLK
Sbjct: 195 DISSRRNEVLDRWRRLK 211
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 2/200 (1%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQ 213
L +F+ ++ WIN V++DE D+ E L + E + ++ ++ Q
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 214 LADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAW 273
+L+ GH I ++ + L + L++ + R+ L E+Q F+RD ++ W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 274 IAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGI-HSDHG 332
A ++A L++++ G L SV+ L +KHE ++ + E+K++ L A AD+L H G
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 333 DQIQAKRAEIVEYWERLTGK 352
D I ++R E+++ W RL +
Sbjct: 195 D-ISSRRNEVLDRWRRLKAQ 213
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 93/197 (47%), Gaps = 1/197 (0%)
Query: 834 FQQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
Q+F D + SW+ + D D T +++HQ E++A
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELW 952
GQ+LL HYAS +I+Q+++ + L A ++ L + + Q F+R E E W
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAENW 134
Query: 953 LSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDAD 1012
+ E L +ED G L SV+ L KKH + + ++I +++A +Q + GH+
Sbjct: 135 XAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKG 194
Query: 1013 NIKAKQAAMCERYENLQ 1029
+I +++ + +R+ L+
Sbjct: 195 DISSRRNEVLDRWRRLK 211
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 30/215 (13%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDE 531
LQ F D +W+ +S+++L + EAL+++H++ + A+ +A ++
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 532 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERL 591
F +L+ HYA+ ++ Q+ D+L + RA L + +RR L+ + Q F E E
Sbjct: 75 FGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRXXLDQCLELQLFHRDCEQAE-- 132
Query: 592 TGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEH 651
+W + +A ++ ++ + EAL+++H++
Sbjct: 133 ----------------------------NWXAAREAFLNTEDKGDSLDSVEALIKKHEDF 164
Query: 652 KGEIDAREDSFRGTADAGQSLLDRNHYAADDIREK 686
I+ +E+ L+ HYA DI +
Sbjct: 165 DKAINVQEEKIAALQAFADQLIAAGHYAKGDISSR 199
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGA 319
+QRF D + +WI ++SSDE +D+ + L +H+ ++ A
Sbjct: 15 LQRFLSDFRDLXSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQ 74
Query: 320 EADRLCGIHSDHG-----------DQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHR 368
+L HG D + +RA++ + W + R+ LD+ L
Sbjct: 75 FGQQLLA----HGHYASPEIKQKLDILDQERADLEKAWVQ-------RRXXLDQCLELQL 123
Query: 369 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428
F D +W + +A ++ ++ + EAL+++H++ I+ +E+
Sbjct: 124 FHRDCEQAENWXAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFAD 183
Query: 429 SLLDRNHYAADDIREK 444
L+ HYA DI +
Sbjct: 184 QLIAAGHYAKGDISSR 199
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 30 ADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYKETTN-LQAKIQKH 88
AD + +R L+ Q F RD ++ E+W + + E ++ + ++A I+KH
Sbjct: 102 ADLEKAWVQRRXXLDQCLELQLFHRDCEQAENWXAAREAFLNTEDKGDSLDSVEALIKKH 161
Query: 89 QAFEAEVAAHSNAIVVLDNTGKEMINQNHFA 119
+ F+ + I L ++I H+A
Sbjct: 162 EDFDKAINVQEEKIAALQAFADQLIAAGHYA 192
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 175/311 (56%), Gaps = 3/311 (0%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-QEYRVTEVN 212
L Q R+ D++ WI ++E + E G D EHV +LQ +F EF +D + + RV VN
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 213 QLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVA 272
LAD+L+ GH + TI K+ L+EAW L +L R + L ++E+ +F DA E
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFG 127
Query: 273 WIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHS-DH 331
I +K L +E GRD +V+TLQR H E D+ AL +V L +A RL ++ D
Sbjct: 128 RIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDK 186
Query: 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADE 391
D IQ + E++E W+ L + R+ +L ++ RF + RDL+ W+ D+ I A E
Sbjct: 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQE 246
Query: 392 LAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLEND 451
+DV+ E L+ HQ K EIDAR DSF + G+SLL R HYA+++I+EKL L
Sbjct: 247 KPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEK 306
Query: 452 KTHLLTLWEER 462
+ ++ WE+R
Sbjct: 307 RKEMIDKWEDR 317
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 158/352 (44%), Gaps = 46/352 (13%)
Query: 363 SYYLHRFLADYR---DLISWVSDMKAIISADELAKDVAGAEALLERHQEH---KGEIDA- 415
S+ HR R DL W+++ + + + EL +D L ER +E G I
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 416 REDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLF 475
R D+ AD L++ H A I E L LL L + R + +L F
Sbjct: 62 RVDTVNHLAD---ELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKF 118
Query: 476 YRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATK 535
Y D ++ + + L E+LG ++VE L + H FE + A +++ L E A +
Sbjct: 119 YHDAKEIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAAR 177
Query: 536 LIEGQHYA---ADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
L YA ADD+ +R + E++E W+ L
Sbjct: 178 LQAA--YAGDKADDIQKREN------------------------------EVLEAWKSLL 205
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
+ R+ +L ++ RF + RDL+ W+ D+ I A E +DV+ E L+ HQ K
Sbjct: 206 DACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIK 265
Query: 653 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEER 704
EIDAR DSF + G+SLL R HYA+++I+EKL L + ++ WE+R
Sbjct: 266 AEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDR 317
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 143/309 (46%), Gaps = 18/309 (5%)
Query: 719 RDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVN 778
R+ + + W+A++E + +LG + V L ++ +F + D +
Sbjct: 13 REVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFAR-------------DTGNIG 59
Query: 779 TMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFE 838
++ ++ A +LI H A +A+ +D L + A LLE R IL SY+ +F
Sbjct: 60 QERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFY 119
Query: 839 RDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELL 898
D E + +K K ++ D + + H FE ++ A T++ ++ L
Sbjct: 120 HDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQ 179
Query: 899 EANHYASDK---IRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSE 955
A YA DK I++R +++ W+SL A E + +L + + F + D+ LW+ +
Sbjct: 180 AA--YAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMED 237
Query: 956 IEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIK 1015
+ Q+ +++ +D++SV+ L H ++A++ + D + + L R H+ ++ IK
Sbjct: 238 VIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIK 297
Query: 1016 AKQAAMCER 1024
K + E+
Sbjct: 298 EKLLQLTEK 306
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 137/313 (43%), Gaps = 11/313 (3%)
Query: 258 HEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL-EDKVST 316
H + + NR+ D+ WIAE++ V S E G+D V LQ + RD + +++V T
Sbjct: 6 HRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDT 65
Query: 317 LGAEADRLCGIHSDHGD--QIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYR 374
+ AD L I+S H D I + + E W L R Q L SY LH+F D +
Sbjct: 66 VNHLADEL--INSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAK 123
Query: 375 DLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRN 434
++ + D + +EL +D E L H + +I A R + L +
Sbjct: 124 EIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARL--QA 180
Query: 435 HYA---ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEA 491
YA ADDI+++ + LL E RR+ D F+ WM
Sbjct: 181 AYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIR 240
Query: 492 FLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRR 551
+ ++ + SVE L+ H+ + + A+ + E L+ +HYA++++ ++
Sbjct: 241 QIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKL 300
Query: 552 DLLLKRRAGLLEK 564
L ++R +++K
Sbjct: 301 LQLTEKRKEMIDK 313
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 130/313 (41%), Gaps = 16/313 (5%)
Query: 47 RRFQYFKRDADELESWIYEK-LQAASDE---SYKETTNLQAKIQKHQAFEAEVAAHSNAI 102
R FQ R+ D+LE WI E+ + A S E Y+ T LQ + ++ + +
Sbjct: 7 RLFQ-LNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIG--QERV 63
Query: 103 VVLDNTGKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCD 162
+++ E+IN H + I + L + L +F
Sbjct: 64 DTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAK 123
Query: 163 EVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKL-VLE 221
E+ I DK + +E G D VE LQR F+ D+ + +V ++ + A +L
Sbjct: 124 EIFGRIQDKHKKL-PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAY 182
Query: 222 GHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVL 281
+ + I +R+ E+ EAW L R+ +L + RF + + W+ + +
Sbjct: 183 AGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQI 242
Query: 282 SSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQ----- 336
+ E RD++SV+ L H+G++ ++ A D +T L ++I+
Sbjct: 243 EAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQ 302
Query: 337 --AKRAEIVEYWE 347
KR E+++ WE
Sbjct: 303 LTEKRKEMIDKWE 315
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSR-RFQYFKRDADELESWIYEKL-QAASD 72
A+DIQ+R +VL + S+R +L D+ +F++F D L W+ + + Q +
Sbjct: 187 ADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRD-LMLWMEDVIRQIEAQ 245
Query: 73 ESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVI 123
E ++ ++++ + HQ +AE+ A +++ GK ++ + H+ASE I
Sbjct: 246 EKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEI 296
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 140/348 (40%), Gaps = 51/348 (14%)
Query: 477 RDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLA-AQEEKIKALDEFATK 535
R+ + + W+A++E + +LG + V L ++ +F + +E++ ++ A +
Sbjct: 13 REVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADE 72
Query: 536 LIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKA 595
LI H A +A+ +D L + A LLE L D+
Sbjct: 73 LINSGHSDAATIAEWKDGLNEAWADLLE--------LIDT-------------------- 104
Query: 596 KGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEI 655
R Q L SY LH+F D +++ + D + +EL +D E L H + +I
Sbjct: 105 --RTQILAASYELHKFYHDAKEIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDI 161
Query: 656 DAREDSFRGTADAGQSLLDRNHYA---ADDIREKLRNLENDKTHLLTLWEERRILYEQCM 712
A R + L + YA ADDI+++ + LL E RR+
Sbjct: 162 QALGTQVRQLQEDAARL--QAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTG 219
Query: 713 DLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 772
D F+ WM + ++ + SVE L+ H+ + + A+ +
Sbjct: 220 DKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCI 279
Query: 773 DLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEK 820
+L K L+ +HYA++++ ++ L ++R +++K
Sbjct: 280 ELGK--------------SLLARKHYASEEIKEKLLQLTEKRKEMIDK 313
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 942 FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVAS-HLDRIESVKAAT 1000
NR ++D+E W++E E S + G+D V LQ++ D + +R+++V
Sbjct: 11 LNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLA 70
Query: 1001 EQFLERGHFDADNIKAKQAAMCERYENL 1028
++ + GH DA I + + E + +L
Sbjct: 71 DELINSGHSDAATIAEWKDGLNEAWADL 98
>pdb|3F31|A Chain A, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
pdb|3F31|B Chain B, Crystal Structure Of The N-Terminal Region Of
Alphaii-Spectr Tetramerization Domain
Length = 149
Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 101/142 (71%)
Query: 9 VKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQ 68
VK+LETA DIQERR+QVL+RY FK + +R+KLEDS RFQ+F+RDA+ELE WI EKLQ
Sbjct: 8 VKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQ 67
Query: 69 AASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIXXXXX 128
ASDE+YK+ TNLQ K+QKHQAFEAEV A+S AIV LD TG MI++ HFASE I
Sbjct: 68 IASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLM 127
Query: 129 XXXXXXXXXXXXXAEKGMKLQQ 150
EKG+KL Q
Sbjct: 128 ELHRQWELLLEKMREKGIKLLQ 149
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 92/150 (61%), Gaps = 4/150 (2%)
Query: 784 ALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDE 843
++D K++E A+D+ +RR +L R E S RR LEDSY+FQ F+RD +E
Sbjct: 2 SMDPSGVKVLE----TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEE 57
Query: 844 TKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHY 903
+ W+ EKL+ A+D+NY DPTNL GK+QKHQ FE E+ AN + ++ TG ++ H+
Sbjct: 58 LEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHF 117
Query: 904 ASDKIRQRMEQIVHLWESLATATEKKGNKL 933
AS+ IR R+ ++ WE L +KG KL
Sbjct: 118 ASETIRTRLMELHRQWELLLEKMREKGIKL 147
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 335 IQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAK 394
IQ +R ++++ + R + R+QKL++SY F D +L W+ + K I++DE K
Sbjct: 17 IQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQE-KLQIASDENYK 75
Query: 395 DVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNL 448
D + L++HQ + E+ A + + G ++ H+A++ IR +L L
Sbjct: 76 DPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMEL 129
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 70/163 (42%), Gaps = 35/163 (21%)
Query: 528 ALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEY 587
++D K++E A+D+ +RR +L R E S RR LEDSY+FQ F+
Sbjct: 2 SMDPSGVKVLE----TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQR---- 53
Query: 588 WERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER 647
D +L W+ + K I++DE KD + L++
Sbjct: 54 --------------------------DAEELEKWIQE-KLQIASDENYKDPTNLQGKLQK 86
Query: 648 HQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNL 690
HQ + E+ A + + G ++ H+A++ IR +L L
Sbjct: 87 HQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMEL 129
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 227 ETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY 286
E I R++++ + + R K+L+ +R++KL ++ Q F RDA+E WI EK + +SDE
Sbjct: 15 EDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQI-ASDEN 73
Query: 287 GRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYW 346
+D ++Q +KH+ E ++ A + L + + + I+ + E+ W
Sbjct: 74 YKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQW 133
Query: 347 ERLTGKAKGRKQKL 360
E L K + + KL
Sbjct: 134 ELLLEKMREKGIKL 147
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 892 STGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIEL 951
+G ++LE ++ I++R +Q++ + + + KL+++ + Q F R E++E
Sbjct: 5 PSGVKVLET----AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEK 60
Query: 952 WLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDA 1011
W+ E + Q+ S++ KD T++Q +KH EA+V ++ I + + GHF +
Sbjct: 61 WIQE-KLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFAS 119
Query: 1012 DNIKAKQAAMCERYENL 1028
+ I+ + + ++E L
Sbjct: 120 ETIRTRLMELHRQWELL 136
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 437 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNE 496
A+DI+E+ + + + L RR E Q F RD E+ + W+ ++ S+E
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
Query: 497 DLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLK 556
+ D + ++ ++KH+ FE + A I LDE +I H+A++ + + R + L
Sbjct: 73 NYKDPTN-LQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETI-RTRLMELH 130
Query: 557 RRAGLLEKSARRRAI 571
R+ LL + R + I
Sbjct: 131 RQWELLLEKMREKGI 145
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 679 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNE 738
A+DI+E+ + + + L RR E Q F RD E+ + W+ ++ S+E
Sbjct: 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDE 72
Query: 739 DLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHY 798
+ D + ++ ++KH+ FE + A N+ I LDE +I H+
Sbjct: 73 NYKDPTN-LQGKLQKHQAFEAEVQA--------------NSGAIVKLDETGNLMISEGHF 117
Query: 799 AADDVAQRRDLLLKRRAGLLEKSARRRAI 827
A++ + + R + L R+ LL + R + I
Sbjct: 118 ASETI-RTRLMELHRQWELLLEKMREKGI 145
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 157 FIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLAD 216
F R +E+ WI +K + +DE D +++ +K F+ ++ + + ++++ +
Sbjct: 51 FQRDAEELEKWIQEKLQ-IASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGN 109
Query: 217 KLVLEGHPERETIVRRKEELSEAW------MRLKQLALMR 250
++ EGH ETI R EL W MR K + L++
Sbjct: 110 LMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLLQ 149
>pdb|1U4Q|A Chain A, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
pdb|1U4Q|B Chain B, Crystal Structure Of Repeats 15, 16 And 17 Of Chicken
Brain Alpha Spectrin
Length = 322
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 183/319 (57%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
A++ Q FN + W++E +A+L+S++YG+DLASV L +KH+ +E D++A ED++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
L ++AD L + Q++ KR I ++R+ A R+ KL+ES+ LH+F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + +G D G+ L D N
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 437 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNE 496
++I+++L + L L R E+ ++ Q F + E+ + W+ ++ +++E
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 497 DLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLK 556
D GD+L +++ L+KKHE FE ++++ + LI+ ++ +++ + L
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKG 301
Query: 557 RRAGLLEKSARRRAILEDS 575
+ + L + +A+R+A L+++
Sbjct: 302 KVSDLEKAAAQRKAKLDEN 320
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 164/318 (51%), Gaps = 15/318 (4%)
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+++K L+
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF 834
A L+ + V +R+ + R + +A RRA L +S++
Sbjct: 66 --------------ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRL 111
Query: 835 QQFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
QF RD D+ +SW+ EK L +++D D T + +KH+ E EL A++ + + T
Sbjct: 112 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDT 171
Query: 894 GQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWL 953
G++L + N ++I+QR+ Q V W+ L +G +L+E+ + Q F +E+ E W+
Sbjct: 172 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 231
Query: 954 SEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADN 1013
+E + SEDYG L ++Q L KKH E D H DR+ V A E +++ + +N
Sbjct: 232 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 291
Query: 1014 IKAKQAAMCERYENLQRP 1031
I AK + + +L++
Sbjct: 292 ITAKMKGLKGKVSDLEKA 309
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 163/283 (57%)
Query: 166 FWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPE 225
FW+++ EA + ++++G DL V L +K + D+++ E R+ ++N AD L+ +
Sbjct: 17 FWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFD 76
Query: 226 RETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDE 285
+ ++E ++ + R+K +A R+ KL +H + +F RD D+ +WI EK ++SS++
Sbjct: 77 TSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSED 136
Query: 286 YGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEY 345
YGRDL VQ L++KH+ +E +LAA E + + +L ++ ++IQ + A+ V++
Sbjct: 137 YGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDH 196
Query: 346 WERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER 405
W+ L A R Q+L+ES +F+A+ + +W+++ ++++++ +A + LL++
Sbjct: 197 WKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKK 256
Query: 406 HQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNL 448
H+ + + +D G+ L+ +N++ ++I K++ L
Sbjct: 257 HEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL 299
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 159/317 (50%), Gaps = 34/317 (10%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+++K L+
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
A L+ + V +R+ + R ++R+
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGR------------------------------FQRIK 95
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
A R+ KL+ES+ LH+F D D SW+ + K ++S+++ +D+ G + L ++H+ +
Sbjct: 96 SMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE 155
Query: 653 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCM 712
E+ A E + +G D G+ L D N ++I+++L + L L R E+ +
Sbjct: 156 AELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215
Query: 713 DLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKAL- 771
+ Q F + E+ + W+ ++ +++ED GD+L +++ L+KKHE FE ++++ +
Sbjct: 216 EYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVC 275
Query: 772 ---DDLLKVNTMQIKAL 785
+DL+K N ++ +
Sbjct: 276 ANGEDLIKKNNHHVENI 292
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/315 (27%), Positives = 156/315 (49%), Gaps = 1/315 (0%)
Query: 50 QYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
Q F + + W+ E + E Y K+ ++ ++KHQ EA+++AH + + L++
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 109 GKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMFWI 168
++ + F + + A + KL ++ L QF R D+ WI
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 169 NDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERET 228
+K+ V+++++G DL V+ L++K + ++A+ E + V KL + +E
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 185
Query: 229 IVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGR 288
I +R + + W LKQLA R ++L + E Q+F + +E AWI EK +++S++YG
Sbjct: 186 IQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGD 245
Query: 289 DLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWER 348
LA++Q L +KHE E D +D+V+ + A + L ++ H + I AK +
Sbjct: 246 TLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSD 305
Query: 349 LTGKAKGRKQKLDES 363
L A RK KLDE+
Sbjct: 306 LEKAAAQRKAKLDEN 320
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 154/322 (47%), Gaps = 30/322 (9%)
Query: 369 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428
F +D W+S+++A++++++ KD+A LL++HQ + +I A ED +
Sbjct: 8 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 67
Query: 429 SLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAK 488
SL+ + + +++K + + ++ RR + L F+RD + ++W+ +
Sbjct: 68 SLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKE 127
Query: 489 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVA 548
++ +S+ED G L V+ L KKH+ E LAA E I+ + + KL + +++
Sbjct: 128 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQ 187
Query: 549 QRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYL 608
QR QF V++W+ L A R Q+L+ES
Sbjct: 188 QR---------------------------LAQF---VDHWKELKQLAAARGQRLEESLEY 217
Query: 609 HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADA 668
+F+A+ + +W+++ ++++++ +A + LL++H+ + + +D
Sbjct: 218 QQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCAN 277
Query: 669 GQSLLDRNHYAADDIREKLRNL 690
G+ L+ +N++ ++I K++ L
Sbjct: 278 GEDLIKKNNHHVENITAKMKGL 299
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 1/238 (0%)
Query: 18 IQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESY-K 76
++++RE + R+ KS A ++R KL +S R F RD D+ ESWI EK S E Y +
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139
Query: 77 ETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIXXXXXXXXXXXXX 136
+ T +Q +KH+ EAE+AAH AI + +TGK++ + N E I
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199
Query: 137 XXXXXAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDE 196
A +G +L+++L QF+ +E WIN+K V ++++G L ++ L +K +
Sbjct: 200 LKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEA 259
Query: 197 FQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKL 254
F+ D + RV +V + L+ + + E I + + L L++ A R+ KL
Sbjct: 260 FETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKL 317
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 62/94 (65%)
Query: 936 ASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIES 995
A++QQ FN I+D + WLSE+E L SEDYGKDL SV NL KKH LLEAD+++H DR++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 996 VKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029
+ + + + FD +K K+ + R++ ++
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIK 95
>pdb|3LBX|B Chain B, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 185
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 103/178 (57%), Gaps = 11/178 (6%)
Query: 610 RFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAG 669
RF + RDL+SW+ + I E +DV+ E L++ HQ EI+ R +F + G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 670 QSLLDRNHYAADDIREKLRNLENDKTHLLTLWEER----RILYEQCMDLQLFYRDTEQAD 725
+SLL R H A+++IREKL+ + + + + WE R R+L E C F RD A+
Sbjct: 68 ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQ----FSRDASVAE 123
Query: 726 TWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIK 783
W+ QE +L++ D G ++DSVE LIK+HE FEKS A+ E+ AL+ K T+++K
Sbjct: 124 AWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALE---KPTTLELK 178
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 8/171 (4%)
Query: 368 RFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAG 427
RF + RDL+SW+ + I E +DV+ E L++ HQ EI+ R +F + G
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 428 QSLLDRNHYAADDIREKLRNLENDKTHLLTLWEER----RILYEQCMDLQLFYRDTEQAD 483
+SLL R H A+++IREKL+ + + + + WE R R+L E C F RD A+
Sbjct: 68 ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQ----FSRDASVAE 123
Query: 484 TWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFAT 534
W+ QE +L++ D G ++DSVE LIK+HE FEKS A+ E+ AL++ T
Sbjct: 124 AWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTT 174
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Query: 830 DSYKFQQFERDCDETKSWVTEKLK-FANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMD 888
D ++F RD SW+ ++ + D +++ ++ HQ E+
Sbjct: 5 DKFRFFSMARDL---LSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 889 EITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIED 948
G+ LL+ H AS++IR++++Q++ + + E + +L+ + F+R
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 949 IELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAAT 1000
E WL E L S D+G + SV+ L K+H E AS +R +++ T
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPT 173
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 14/169 (8%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
+F +++ W+ + E D+ VE+L + ++ ++ + +L
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 216 DKLVLEGHPERETI-------VRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDAD 268
+ L+ H E I + R++E++E W R E+L E+ +F+RDA
Sbjct: 68 ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWE-------ARWERLRMLLEVCQFSRDAS 120
Query: 269 ETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTL 317
AW+ ++ L+S ++G + SV+ L ++HE E+ A+ ++ + L
Sbjct: 121 VAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAAL 169
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 2/157 (1%)
Query: 48 RFQYFKRDADELESWIYEKL-QAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLD 106
+F++F A +L SW+ + Q + E ++ ++++ ++ HQ AE+ S
Sbjct: 6 KFRFFSM-ARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACL 64
Query: 107 NTGKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMF 166
G+ ++ + H ASE I + +L+ L + QF R
Sbjct: 65 ELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEA 124
Query: 167 WINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS 203
W+ +E ++ + +FG ++ VE L ++ + F+K AS
Sbjct: 125 WLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTAS 161
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/146 (18%), Positives = 65/146 (44%)
Query: 262 RFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEA 321
RF A + ++W+ + + E RD++SV+ L + H+G+ ++ S
Sbjct: 8 RFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELG 67
Query: 322 DRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVS 381
+ L ++I+ K +++ + + K + R ++L + +F D +W+
Sbjct: 68 ESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLI 127
Query: 382 DMKAIISADELAKDVAGAEALLERHQ 407
+ +++ + V E L++RH+
Sbjct: 128 AQEPYLASGDFGHTVDSVEKLIKRHE 153
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 67/154 (43%), Gaps = 15/154 (9%)
Query: 726 TWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKAL 785
+WM + ++ + SVE L+K H+ ++ ++ + A
Sbjct: 18 SWMESIIRQIETQERPRDVSSVELLMKYHQ--------------GINAEIETRSKNFSAC 63
Query: 786 DEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETK 845
E L++ QH A++++ ++ ++ RR + EK R L + QF RD +
Sbjct: 64 LELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAE 123
Query: 846 SW-VTEKLKFANDDNYLDPTNLNGKVQKHQNFEQ 878
+W + ++ A+ D ++ +++H+ FE+
Sbjct: 124 AWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEK 157
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 13 ETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESW-IYEKLQAAS 71
+ + +I+E+ +QV++R + + ++ E+L F RDA E+W I ++ AS
Sbjct: 76 QASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLAS 135
Query: 72 DESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
+ +++ I++H+AFE A+ + L+
Sbjct: 136 GDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKP 172
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 942 FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATE 1001
F D+ W+ I Q+ +++ +D++SV+ L K H + A++ + + E
Sbjct: 9 FFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGE 68
Query: 1002 QFLERGHFDADNIKAK-QAAMCERYE 1026
L+R H ++ I+ K Q M R E
Sbjct: 69 SLLQRQHQASEEIREKLQQVMSRRKE 94
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 484 TWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYA 543
+WM + ++ + SVE L+K H+ + + + A E L++ QH A
Sbjct: 18 SWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQA 77
Query: 544 ADDVAQRRDLLLKRRAGLLEK-SAR--RRAILEDSYKFQQFEEIVEYW 588
++++ ++ ++ RR + EK AR R +L + +F + + E W
Sbjct: 78 SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAW 125
>pdb|1U5P|A Chain A, Crystal Structure Of Repeats 15 And 16 Of Chicken Brain
Alpha Spectrin
Length = 216
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 116/189 (61%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
A++ Q FN + W++E +A+L+S++YG+DLASV L +KH+ +E D++A ED++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
L ++AD L + Q++ KR I ++R+ A R+ KL+ES+ LH+F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + +G D G+ L D N
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 437 AADDIREKL 445
++I+++L
Sbjct: 182 GKEEIQQRL 190
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 118/198 (59%)
Query: 166 FWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPE 225
FW+++ EA + ++++G DL V L +K + D+++ E R+ ++N AD L+ +
Sbjct: 17 FWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFD 76
Query: 226 RETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDE 285
+ ++E ++ + R+K +A R+ KL +H + +F RD D+ +WI EK ++SS++
Sbjct: 77 TSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSED 136
Query: 286 YGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEY 345
YGRDL VQ L++KH+ +E +LAA E + + +L ++ ++IQ + A+ V++
Sbjct: 137 YGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDH 196
Query: 346 WERLTGKAKGRKQKLDES 363
W+ L A R Q+L+ES
Sbjct: 197 WKELKQLAAARGQRLEES 214
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 15/223 (6%)
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+++K L+
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF 834
A L+ + V +R+ + R + +A RRA L +S++
Sbjct: 66 --------------ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRL 111
Query: 835 QQFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
QF RD D+ +SW+ EK L +++D D T + +KH+ E EL A++ + + T
Sbjct: 112 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDT 171
Query: 894 GQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEA 936
G++L + N ++I+QR+ Q V W+ L +G +L+E+
Sbjct: 172 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 106/215 (49%), Gaps = 30/215 (13%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+++K L+
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
A L+ + V +R E I ++R+
Sbjct: 66 ADSLMTSSAFDTSQVKDKR------------------------------ETINGRFQRIK 95
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
A R+ KL+ES+ LH+F D D SW+ + K ++S+++ +D+ G + L ++H+ +
Sbjct: 96 SMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLE 155
Query: 653 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKL 687
E+ A E + +G D G+ L D N ++I+++L
Sbjct: 156 AELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRL 190
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 62/94 (65%)
Query: 936 ASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIES 995
A++QQ FN I+D + WLSE+E L SEDYGKDL SV NL KKH LLEAD+++H DR++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 996 VKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029
+ + + + FD +K K+ + R++ ++
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIK 95
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Query: 833 KFQQFERDCDETKSWVTE-KLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEIT 891
K Q F + W++E + A++D D ++N ++KHQ E +++A++ R+ ++
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 892 STGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIEL 951
S L+ ++ + + +++ + E I ++ + + + KL E+ + F R ++D E
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 952 WLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESV 996
W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H I+ V
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGV 168
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 108/237 (45%), Gaps = 30/237 (12%)
Query: 369 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428
F +D W+S+++A++++++ KD+A LL++HQ + +I A ED +
Sbjct: 8 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 67
Query: 429 SLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAK 488
SL+ + + +++K + + ++ RR + L F+RD + ++W+ +
Sbjct: 68 SLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKE 127
Query: 489 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVA 548
++ +S+ED G L V+ L KKH+ E LAA E I+ + + KL + +++
Sbjct: 128 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQ 187
Query: 549 QRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDES 605
QR + V++W+ L A R Q+L+ES
Sbjct: 188 QR------------------------------LAQFVDHWKELKQLAAARGQRLEES 214
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 85/163 (52%)
Query: 611 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 670
F +D W+S+++A++++++ KD+A LL++HQ + +I A ED +
Sbjct: 8 FNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQAD 67
Query: 671 SLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAK 730
SL+ + + +++K + + ++ RR + L F+RD + ++W+ +
Sbjct: 68 SLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKE 127
Query: 731 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
++ +S+ED G L V+ L KKH+ E LAA E I+ + D
Sbjct: 128 KKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLD 170
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 18 IQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESY-K 76
++++RE + R+ KS A ++R KL +S R F RD D+ ESWI EK S E Y +
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGR 139
Query: 77 ETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIXXXXXXXXXXXXX 136
+ T +Q +KH+ EAE+AAH AI + +TGK++ + N E I
Sbjct: 140 DLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199
Query: 137 XXXXXAEKGMKLQQAL 152
A +G +L+++L
Sbjct: 200 LKQLAAARGQRLEESL 215
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 1/206 (0%)
Query: 50 QYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
Q F + + W+ E + E Y K+ ++ ++KHQ EA+++AH + + L++
Sbjct: 6 QNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQ 65
Query: 109 GKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMFWI 168
++ + F + + A + KL ++ L QF R D+ WI
Sbjct: 66 ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWI 125
Query: 169 NDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERET 228
+K+ V+++++G DL V+ L++K + ++A+ E + V KL + +E
Sbjct: 126 KEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEE 185
Query: 229 IVRRKEELSEAWMRLKQLALMRQEKL 254
I +R + + W LKQLA R ++L
Sbjct: 186 IQQRLAQFVDHWKELKQLAAARGQRL 211
>pdb|3KBU|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
pdb|3KBU|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
Length = 326
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 143/314 (45%), Gaps = 4/314 (1%)
Query: 50 QYFKRDADELESWIYEK-LQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
Q + DADE E+WI E+ L SDE K+ +++H + V + I L +
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASR 66
Query: 109 GKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMFWI 168
+ +++ H E I E+ KL+ L Q R+ D++ WI
Sbjct: 67 AQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWI 126
Query: 169 NDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-QEYRVTEVNQLADKLVLEGHPERE 227
++KE ++ E G D +HV +L+ KF +F ++ + + RV VN ++L+ GH E
Sbjct: 127 SEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA 186
Query: 228 TIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYG 287
TI K+ L+E W L +L R + L ++++ R+ E + I EK L D G
Sbjct: 187 TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPED-VG 245
Query: 288 RDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRL-CGIHSDHGDQIQAKRAEIVEYW 346
D ++ ++ R H ERD+ L +V A RL + + IQ K E+ W
Sbjct: 246 LDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAW 305
Query: 347 ERLTGKAKGRKQKL 360
+ L GR+ +L
Sbjct: 306 QALLDACAGRRTQL 319
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 1/216 (0%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
Q+ DE WI ++E +V +DE D E V+ ++ Q+ + + ++ A
Sbjct: 8 QYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRA 67
Query: 216 DKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIA 275
L+ GHPE E I+R + ++ + + LK +A R+ KL + + + R+ D+ WI+
Sbjct: 68 QGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWIS 127
Query: 276 EKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL-EDKVSTLGAEADRLCGIHSDHGDQ 334
EK+ V SS E G+D V L+ K R+ A+ +++V + A +RL
Sbjct: 128 EKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAAT 187
Query: 335 IQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFL 370
I + + E W L R Q L SY LHR+
Sbjct: 188 IAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYF 223
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 135/317 (42%), Gaps = 18/317 (5%)
Query: 620 SWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA 679
+W+ + + + +DE+ KD GA +L+RH + ++ + + A Q LL H
Sbjct: 18 AWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPE 77
Query: 680 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNED 739
+ I ++ L + ER+ E L R+T+ + W++++E S+ +
Sbjct: 78 GEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPE 137
Query: 740 LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYA 799
+G D V L K DF + A + ++ ++ F +LI+ H
Sbjct: 138 MGQDFDHVTLLRDKFRDFARETGA-------------IGQERVDNVNAFIERLIDAGHSE 184
Query: 800 ADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDN 859
A +A+ +D L + A LLE R +L SY ++ E + EK + +D
Sbjct: 185 AATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDV 244
Query: 860 YLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDK---IRQRMEQIV 916
LD + + H FE++++ ++ + L A YA +K I+ + +++
Sbjct: 245 GLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA--YAGEKAEAIQNKEQEVS 302
Query: 917 HLWESLATATEKKGNKL 933
W++L A + +L
Sbjct: 303 AAWQALLDACAGRRTQL 319
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 10/285 (3%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
A+E Q++ DADE AWI E++ + SDE +D + ++H +R + +
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQ 62
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
L + A L G+QI + ++ +++ L A RK+KL+ Y+L + + DL
Sbjct: 63 LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDL 122
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA----REDSFRGTADAGQSLLD 432
W+S+ + + S+ E+ +D L ++ ++ E A R D+ + L+D
Sbjct: 123 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI---ERLID 179
Query: 433 RNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-QLFYRDTEQADTWMAKQEA 491
H A I E L LL L + R L DL + FY E K
Sbjct: 180 AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRE 239
Query: 492 FLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKL 536
ED+G + E+ + H FE+ + +++ + AT+L
Sbjct: 240 L--PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRL 282
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 130/274 (47%), Gaps = 17/274 (6%)
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
Q +Y D ++A+ W+ +QE ++ ++++ + ++K+H L Q +A++D
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRH------LRQQ----RAVEDY 56
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF 834
+ IK L A L+ H + + + + + K AGL + + R+ LE+ Y
Sbjct: 57 GR----NIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACERKRKLENMYHL 112
Query: 835 QQFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNA-NKTRMDEITS 892
Q +R+ D+ + W++EK L ++ + D ++ K ++F +E A + R+D + +
Sbjct: 113 FQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNA 172
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELW 952
+ L++A H + I + + + +W L + + L + + T +I L
Sbjct: 173 FIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEI-LG 231
Query: 953 LSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADV 986
L + + + + ED G D ++ ++ + H E DV
Sbjct: 232 LIDEKHRELPEDVGLDASTAESFHRVHTAFERDV 265
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 117/294 (39%), Gaps = 40/294 (13%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
Q +Y D ++A+ W+ +QE ++ ++++ + ++K+H ++++ IK L
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASR 66
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
A L+ H + + + + + K AGL + + R
Sbjct: 67 AQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVACER------------------------ 102
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
K+KL+ Y+L + + DL W+S+ + + S+ E+ +D L ++ ++
Sbjct: 103 ------KRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFA 156
Query: 653 GEIDA----REDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILY 708
E A R D+ + L+D H A I E L LL L + R L
Sbjct: 157 RETGAIGQERVDNVNAFI---ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL 213
Query: 709 EQCMDL-QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSL 761
DL + FY E K ED+G + E+ + H FE+ +
Sbjct: 214 AASYDLHRYFYTGAEILGLIDEKHREL--PEDVGLDASTAESFHRVHTAFERDV 265
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 8/236 (3%)
Query: 24 QVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEK-LQAASDESYKETTNLQ 82
QV YA K A ++ KLE+ KR+ D+LE WI EK L A+S E ++ ++
Sbjct: 87 QVDKHYAGLKDVACERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVT 146
Query: 83 AKIQKHQAFEAEVAAHSNAIVVLDNTG---KEMINQNHFASEVIXXXXXXXXXXXXXXXX 139
K + F E A V DN + +I+ H + I
Sbjct: 147 LLRDKFRDFARETGAIGQERV--DNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLE 204
Query: 140 XXAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQK 199
+ L + L ++ E++ I++K + D G D E R F++
Sbjct: 205 LIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPED-VGLDASTAESFHRVHTAFER 263
Query: 200 DMASQEYRVTEVNQLADKLVLEGHPER-ETIVRRKEELSEAWMRLKQLALMRQEKL 254
D+ +V + +A +L E+ E I +++E+S AW L R+ +L
Sbjct: 264 DVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 319
>pdb|1CUN|A Chain A, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|B Chain B, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
pdb|1CUN|C Chain C, Crystal Structure Of Repeats 16 And 17 Of Chicken Brain
Alpha Spectrin
Length = 213
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 1/199 (0%)
Query: 834 FQQFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
QF RD D+ +SW+ EK L +++D D T + +KH+ E EL A++ + +
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELW 952
TG++L + N ++I+QR+ Q V W+ L +G +L+E+ + Q F +E+ E W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 953 LSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDAD 1012
++E + SEDYG L ++Q L KKH E D H DR+ V A E +++ + +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 1013 NIKAKQAAMCERYENLQRP 1031
NI AK + + +L++
Sbjct: 182 NITAKMKGLKGKVSDLEKA 200
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 111/189 (58%)
Query: 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGA 319
+ +F RD D+ +WI EK ++SS++YGRDL VQ L++KH+ +E +LAA E + ++
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 320 EADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISW 379
+L ++ ++IQ + A+ V++W+ L A R Q+L+ES +F+A+ + +W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 380 VSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAAD 439
+++ ++++++ +A + LL++H+ + + +D G+ L+ +N++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 440 DIREKLRNL 448
+I K++ L
Sbjct: 182 NITAKMKGL 190
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 112/208 (53%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
QF R D+ WI +K+ V+++++G DL V+ L++K + ++A+ E + V
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTG 63
Query: 216 DKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIA 275
KL + +E I +R + + W LKQLA R ++L + E Q+F + +E AWI
Sbjct: 64 KKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWIN 123
Query: 276 EKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQI 335
EK +++S++YG LA++Q L +KHE E D +D+V+ + A + L ++ H + I
Sbjct: 124 EKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENI 183
Query: 336 QAKRAEIVEYWERLTGKAKGRKQKLDES 363
AK + L A RK KLDE+
Sbjct: 184 TAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 114/210 (54%)
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 425
+H+F D D SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + + D
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485
G+ L D N ++I+++L + L L R E+ ++ Q F + E+ + W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAAD 545
+ ++ +++ED GD+L +++ L+KKHE FE ++++ + LI+ ++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 546 DVAQRRDLLLKRRAGLLEKSARRRAILEDS 575
++ + L + + L + +A+R+A L+++
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDEN 211
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 115/222 (51%), Gaps = 15/222 (6%)
Query: 717 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLK 776
F+RD + ++W+ +++ +S+ED G L V+ L KKH+ E LAA E I+++ D K
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 777 VNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQ 836
KL + +++ QR + L + +A R LE+S ++QQ
Sbjct: 65 --------------KLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQ 110
Query: 837 FERDCDETKSWVTEKLKFANDDNYLDP-TNLNGKVQKHQNFEQELNANKTRMDEITSTGQ 895
F + +E ++W+ EK+ ++Y D + G ++KH+ FE + +K R++++ + G+
Sbjct: 111 FVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGE 170
Query: 896 ELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEAS 937
+L++ N++ + I +M+ + L A ++ KL E S
Sbjct: 171 DLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 99/182 (54%), Gaps = 4/182 (2%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 667
+H+F D D SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + + D
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 668 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 727
G+ L D N ++I+++L + L L R E+ ++ Q F + E+ + W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 728 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKAL----DDLLKVNTMQIK 783
+ ++ +++ED GD+L +++ L+KKHE FE ++++ + +DL+K N ++
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 784 AL 785
+
Sbjct: 182 NI 183
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 2/206 (0%)
Query: 50 QYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
Q+F RD D+ ESWI EK S E Y ++ T +Q +KH+ EAE+AAH AI + +T
Sbjct: 4 QFF-RDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT 62
Query: 109 GKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMFWI 168
GK++ + N E I A +G +L+++L QF+ +E WI
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 122
Query: 169 NDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERET 228
N+K V ++++G L ++ L +K + F+ D + RV +V + L+ + + E
Sbjct: 123 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 182
Query: 229 IVRRKEELSEAWMRLKQLALMRQEKL 254
I + + L L++ A R+ KL
Sbjct: 183 ITAKMKGLKGKVSDLEKAAAQRKAKL 208
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 475 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFAT 534
F+RD + ++W+ +++ +S+ED G L V+ L KKH+ E LAA E I+++ +
Sbjct: 5 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGK 64
Query: 535 KLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGK 594
KL + +++ QR QF V++W+ L
Sbjct: 65 KLSDDNTIGKEEIQQR---------------------------LAQF---VDHWKELKQL 94
Query: 595 AKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGE 654
A R Q+L+ES +F+A+ + +W+++ ++++++ +A + LL++H+ + +
Sbjct: 95 AAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETD 154
Query: 655 IDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNL 690
+D G+ L+ +N++ ++I K++ L
Sbjct: 155 FTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGL 190
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 63/108 (58%), Gaps = 1/108 (0%)
Query: 17 DIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYK 76
+IQ+R Q ++ + + K A ++ ++LE+S +Q F + +E E+WI EK+ + E Y
Sbjct: 76 EIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYG 135
Query: 77 ET-TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVI 123
+T +Q ++KH+AFE + H + + + G+++I +N+ E I
Sbjct: 136 DTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENI 183
>pdb|3LBX|A Chain A, Crystal Structure Of The Erythrocyte Spectrin
Tetramerization Domain Complex
Length = 161
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 72/112 (64%)
Query: 10 KILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQA 69
K+LETA +IQERR++VL RY FK + +KLEDS Q FKRDAD+L WI EK+
Sbjct: 19 KVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNI 78
Query: 70 ASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASE 121
+D+SY++ TN+Q K QKHQ+ EAEV S + L+ T +E H A E
Sbjct: 79 LTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHE 130
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%)
Query: 799 AADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDD 858
A+++ +RR +L R E+ A R LEDSY Q F+RD D+ W+ EK+ D
Sbjct: 23 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 82
Query: 859 NYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHL 918
+Y DPTN+ GK QKHQ+ E E+ M E+ T +E H A ++ + +E++ HL
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 142
Query: 919 WESLATATEKKGNKL 933
W+ L T +KG++L
Sbjct: 143 WDLLLELTLEKGDQL 157
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 890 ITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDI 949
+ S+G ++LE +++I++R ++++ ++S ++G KL+++ Q F R +D+
Sbjct: 13 VESSGPKVLET----AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDL 68
Query: 950 ELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHF 1009
W+ E L + Y +D T++Q +KH LEA+V + + ++ E+ GH
Sbjct: 69 GKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHS 127
Query: 1010 DADNIKA 1016
+ KA
Sbjct: 128 AHEETKA 134
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 227 ETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY 286
E I R++E+ + K+ R +KL ++ +Q F RDAD+ WI EK +L+ Y
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSY 84
Query: 287 GRDLASVQTLQRKHEGVERDLAALEDKVSTL-GAEADRLCGIHSDH 331
D ++Q +KH+ +E ++ +S L +R HS H
Sbjct: 85 -EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAH 129
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 333 DQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADEL 392
++IQ +R E++ ++ + R QKL++SY+L F D DL W+ + K I D+
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIME-KVNILTDKS 83
Query: 393 AKDVAGAEALLERHQEHKGEIDAR 416
+D + ++HQ + E+ +
Sbjct: 84 YEDPTNIQGKYQKHQSLEAEVQTK 107
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 571 ILEDSYKFQQF-EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAII 629
+LE + + Q+ +E++ ++ + R QKL++SY+L F D DL W+ + K I
Sbjct: 20 VLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIME-KVNI 78
Query: 630 SADELAKDVAGAEALLERHQEHKGEIDAR 658
D+ +D + ++HQ + E+ +
Sbjct: 79 LTDKSYEDPTNIQGKYQKHQSLEAEVQTK 107
>pdb|1OWA|A Chain A, Solution Structural Studies On Human Erythrocyte Alpha
Spectrin N Terminal Tetramerization Domain
Length = 156
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 72/112 (64%)
Query: 10 KILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQA 69
K+LETA +IQERR++VL RY FK + +KLEDS Q FKRDAD+L WI EK+
Sbjct: 16 KVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNI 75
Query: 70 ASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASE 121
+D+SY++ TN+Q K QKHQ+ EAEV S + L+ T +E H A E
Sbjct: 76 LTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHE 127
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%)
Query: 799 AADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDD 858
A+++ +RR +L R E+ A R LEDSY Q F+RD D+ W+ EK+ D
Sbjct: 20 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDK 79
Query: 859 NYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHL 918
+Y DPTN+ GK QKHQ+ E E+ M E+ T +E H A ++ + +E++ HL
Sbjct: 80 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 139
Query: 919 WESLATATEKKGNKL 933
W+ L T +KG++L
Sbjct: 140 WDLLLELTLEKGDQL 154
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 67/127 (52%), Gaps = 5/127 (3%)
Query: 890 ITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDI 949
+ S+G ++LE +++I++R ++++ ++S ++G KL+++ Q F R +D+
Sbjct: 10 VESSGPKVLET----AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDL 65
Query: 950 ELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHF 1009
W+ E L + Y +D T++Q +KH LEA+V + + ++ E+ GH
Sbjct: 66 GKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHS 124
Query: 1010 DADNIKA 1016
+ KA
Sbjct: 125 AHEETKA 131
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 227 ETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY 286
E I R++E+ + K+ R +KL ++ +Q F RDAD+ WI EK +L+ Y
Sbjct: 22 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSY 81
Query: 287 GRDLASVQTLQRKHEGVERDLAALEDKVSTL-GAEADRLCGIHSDH 331
D ++Q +KH+ +E ++ +S L +R HS H
Sbjct: 82 -EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAH 126
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADE 391
++IQ +R E++ ++ + R QKL++SY+L F D DL W+ + K I D+
Sbjct: 21 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIME-KVNILTDK 79
Query: 392 LAKDVAGAEALLERHQEHKGEIDAR 416
+D + ++HQ + E+ +
Sbjct: 80 SYEDPTNIQGKYQKHQSLEAEVQTK 104
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 571 ILEDSYKFQQF-EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAII 629
+LE + + Q+ +E++ ++ + R QKL++SY+L F D DL W+ + K I
Sbjct: 17 VLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIME-KVNI 75
Query: 630 SADELAKDVAGAEALLERHQEHKGEIDAR 658
D+ +D + ++HQ + E+ +
Sbjct: 76 LTDKSYEDPTNIQGKYQKHQSLEAEVQTK 104
>pdb|3KBT|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBT|B Chain B, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
Length = 326
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 143/314 (45%), Gaps = 4/314 (1%)
Query: 50 QYFKRDADELESWIYEK-LQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
Q + DADE E+WI E+ L SDE K+ +++H + V + I L +
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASR 66
Query: 109 GKEMINQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMFWI 168
+ +++ H E I E+ KL+ L Q R+ D++ WI
Sbjct: 67 AQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWI 126
Query: 169 NDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-QEYRVTEVNQLADKLVLEGHPERE 227
++KE ++ E G D +HV +L+ KF +F ++ + + RV VN ++L+ GH E
Sbjct: 127 SEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAA 186
Query: 228 TIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYG 287
TI K+ L+E W L +L R + L ++++ R+ E + I EK L D G
Sbjct: 187 TIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPED-VG 245
Query: 288 RDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRL-CGIHSDHGDQIQAKRAEIVEYW 346
D ++ ++ R H ERD+ L +V A RL + + IQ K E+ W
Sbjct: 246 LDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAW 305
Query: 347 ERLTGKAKGRKQKL 360
+ L GR+ +L
Sbjct: 306 QALLDACAGRRTQL 319
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 1/216 (0%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
Q+ DE WI ++E +V +DE D E V+ ++ Q+ + + ++ A
Sbjct: 8 QYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRA 67
Query: 216 DKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIA 275
L+ GHPE E I+R + ++ + + LK +A R+ KL + + + R+ D+ WI+
Sbjct: 68 QGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWIS 127
Query: 276 EKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL-EDKVSTLGAEADRLCGIHSDHGDQ 334
EK+ V SS E G+D V L+ K R+ A+ +++V + A +RL
Sbjct: 128 EKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAAT 187
Query: 335 IQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFL 370
I + + E W L R Q L SY LHR+
Sbjct: 188 IAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYF 223
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 136/317 (42%), Gaps = 18/317 (5%)
Query: 620 SWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA 679
+W+ + + + +DE+ KD GA +L+RH + ++ + + A Q LL H
Sbjct: 18 AWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPE 77
Query: 680 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNED 739
+ I ++ L + EER+ E L R+T+ + W++++E S+ +
Sbjct: 78 GEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPE 137
Query: 740 LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYA 799
+G D V L K DF + A + ++ ++ F +LI+ H
Sbjct: 138 MGQDFDHVTLLRDKFRDFARETGA-------------IGQERVDNVNAFIERLIDAGHSE 184
Query: 800 ADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDN 859
A +A+ +D L + A LLE R +L SY ++ E + EK + +D
Sbjct: 185 AATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDV 244
Query: 860 YLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDK---IRQRMEQIV 916
LD + + H FE++++ ++ + L A YA +K I+ + +++
Sbjct: 245 GLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTA--YAGEKAEAIQNKEQEVS 302
Query: 917 HLWESLATATEKKGNKL 933
W++L A + +L
Sbjct: 303 AAWQALLDACAGRRTQL 319
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 125/285 (43%), Gaps = 10/285 (3%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
A+E Q++ DADE AWI E++ + SDE +D + ++H +R + +
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQ 62
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
L + A L G+QI + ++ +++ L A+ RK+KL+ Y+L + + DL
Sbjct: 63 LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDL 122
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA----REDSFRGTADAGQSLLD 432
W+S+ + + S+ E+ +D L ++ ++ E A R D+ + L+D
Sbjct: 123 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI---ERLID 179
Query: 433 RNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-QLFYRDTEQADTWMAKQEA 491
H A I E L LL L + R L DL + FY E K
Sbjct: 180 AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRE 239
Query: 492 FLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKL 536
ED+G + E+ + H FE+ + +++ + AT+L
Sbjct: 240 L--PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRL 282
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 90/198 (45%), Gaps = 6/198 (3%)
Query: 835 QQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKV---QKHQNFEQELNANKTRMDEIT 891
QQ+ D DE ++W+ E+ + D P + G + ++H ++ + + ++
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEI--PKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLA 64
Query: 892 STGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIEL 951
S Q LL A H ++I + Q+ + L E++ KL+ R +D+E
Sbjct: 65 SRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQ 124
Query: 952 WLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVAS-HLDRIESVKAATEQFLERGHFD 1010
W+SE E S + G+D V L+ K + + +R+++V A E+ ++ GH +
Sbjct: 125 WISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSE 184
Query: 1011 ADNIKAKQAAMCERYENL 1028
A I + + E + +L
Sbjct: 185 AATIAEWKDGLNEMWADL 202
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 118/294 (40%), Gaps = 40/294 (13%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
Q +Y D ++A+ W+ +QE ++ ++++ + ++K+H ++++ IK L
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASR 66
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
A L+ H + + + + + K AGL +
Sbjct: 67 AQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDV---------------------------- 98
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
A+ RK+KL+ Y+L + + DL W+S+ + + S+ E+ +D L ++ ++
Sbjct: 99 --AEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFA 156
Query: 653 GEIDA----REDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILY 708
E A R D+ + L+D H A I E L LL L + R L
Sbjct: 157 RETGAIGQERVDNVNAFI---ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLL 213
Query: 709 EQCMDL-QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSL 761
DL + FY E K ED+G + E+ + H FE+ +
Sbjct: 214 AASYDLHRYFYTGAEILGLIDEKHREL--PEDVGLDASTAESFHRVHTAFERDV 265
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 8/236 (3%)
Query: 24 QVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEK-LQAASDESYKETTNLQ 82
QV YA K A ++ KLE+ KR+ D+LE WI EK L A+S E ++ ++
Sbjct: 87 QVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVT 146
Query: 83 AKIQKHQAFEAEVAAHSNAIVVLDNTG---KEMINQNHFASEVIXXXXXXXXXXXXXXXX 139
K + F E A V DN + +I+ H + I
Sbjct: 147 LLRDKFRDFARETGAIGQERV--DNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLE 204
Query: 140 XXAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQK 199
+ L + L ++ E++ I++K + D G D E R F++
Sbjct: 205 LIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPED-VGLDASTAESFHRVHTAFER 263
Query: 200 DMASQEYRVTEVNQLADKLVLEGHPER-ETIVRRKEELSEAWMRLKQLALMRQEKL 254
D+ +V + +A +L E+ E I +++E+S AW L R+ +L
Sbjct: 264 DVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 319
>pdb|3F57|A Chain A, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
pdb|3F57|B Chain B, Crystal Structure Of Human Erythroid Beta Spectrin Repeats
14 And 15 (Ankyrin Binding Domain)
Length = 225
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 3/209 (1%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDM-ASQEYRVTEVN 212
L Q R+ D++ WI++KE ++ E G D +HV +L+ KF +F ++ A + RV VN
Sbjct: 10 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 69
Query: 213 QLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVA 272
++L+ GH E TI K+ L+E W L +L R + L ++++ R+ E +
Sbjct: 70 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 129
Query: 273 WIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRL-CGIHSDH 331
I EK L D G D ++ ++ R H ERD+ L +V A RL +
Sbjct: 130 LIDEKHRELPED-VGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEK 188
Query: 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKL 360
+ IQ K E+ W+ L GR+ +L
Sbjct: 189 AEAIQNKEQEVSAAWQALLDACAGRRTQL 217
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 18/218 (8%)
Query: 719 RDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVN 778
R+T+ + W++++E S+ ++G D V L K DF + A +
Sbjct: 15 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGA-------------IG 61
Query: 779 TMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFE 838
++ ++ F +LI+ H A +A+ +D L + A LLE R +L SY ++
Sbjct: 62 QERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYF 121
Query: 839 RDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELL 898
E + EK + +D LD + + H FE++++ ++ + L
Sbjct: 122 YTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQ 181
Query: 899 EANHYASDK---IRQRMEQIVHLWESLATATEKKGNKL 933
A YA +K I+ + +++ W++L A + +L
Sbjct: 182 TA--YAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 217
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 477 RDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAA-QEEKIKALDEFATK 535
R+T+ + W++++E S+ ++G D V L K DF + A +E++ ++ F +
Sbjct: 15 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 74
Query: 536 LIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQF 581
LI+ H A +A+ +D L + A LLE R +L SY ++
Sbjct: 75 LIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRY 120
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 258 HEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL-EDKVST 316
+ + + R+ D+ WI+EK+ V SS E G+D V L+ K R+ A+ +++V
Sbjct: 8 YHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDN 67
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFL 370
+ A +RL I + + E W L R Q L SY LHR+
Sbjct: 68 VNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYF 121
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Query: 828 LEDSYKFQQFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNA-NKT 885
LE+ Y Q +R+ D+ + W++EK L ++ + D ++ K ++F +E A +
Sbjct: 4 LENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQE 63
Query: 886 RMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRT 945
R+D + + + L++A H + I + + + +W L + + L + + T
Sbjct: 64 RVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYT 123
Query: 946 IEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADV 986
+I L L + + + + ED G D ++ ++ + H E DV
Sbjct: 124 GAEI-LGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDV 163
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 942 FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADV-ASHLDRIESVKAAT 1000
R +D+E W+SE E S + G+D V L+ K + A +R+++V A
Sbjct: 13 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI 72
Query: 1001 EQFLERGHFDADNIKAKQAAMCERYENL 1028
E+ ++ GH +A I + + E + +L
Sbjct: 73 ERLIDAGHSEAATIAEWKDGLNEMWADL 100
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 10/182 (5%)
Query: 360 LDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA---- 415
L+ Y+L + + DL W+S+ + + S+ E+ +D L ++ ++ E A
Sbjct: 4 LENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQE 63
Query: 416 REDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-QL 474
R D+ + L+D H A I E L LL L + R L DL +
Sbjct: 64 RVDNVNAFI---ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRY 120
Query: 475 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFAT 534
FY E K ED+G + E+ + H FE+ + +++ + AT
Sbjct: 121 FYTGAEILGLIDEKHREL--PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVAT 178
Query: 535 KL 536
+L
Sbjct: 179 RL 180
>pdb|3EDU|A Chain A, Crystal Structure Of The Ankyrin-Binding Domain Of Human
Erythroid Spectrin
Length = 218
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 103/209 (49%), Gaps = 3/209 (1%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-QEYRVTEVN 212
L Q R+ D++ WI++KE ++ E G D +HV +L+ KF +F ++ + + RV VN
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 213 QLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVA 272
++L+ GH E TI K+ L+E W L +L R + L ++++ R+ E +
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 273 WIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRL-CGIHSDH 331
I EK L D G D ++ ++ R H ER+L L +V A RL +
Sbjct: 123 LIDEKHRELPED-VGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEK 181
Query: 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKL 360
+ IQ K E+ W+ L GR+ +L
Sbjct: 182 AEAIQNKEQEVSAAWQALLDACAGRRTQL 210
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 18/218 (8%)
Query: 719 RDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVN 778
R+T+ + W++++E S+ ++G D V L K DF + A +
Sbjct: 8 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGA-------------IG 54
Query: 779 TMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFE 838
++ ++ F +LI+ H A +A+ +D L + A LLE R +L SY ++
Sbjct: 55 QERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYF 114
Query: 839 RDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELL 898
E + EK + +D LD + + H FE+EL+ ++ + L
Sbjct: 115 YTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQ 174
Query: 899 EANHYASDK---IRQRMEQIVHLWESLATATEKKGNKL 933
A YA +K I+ + +++ W++L A + +L
Sbjct: 175 TA--YAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQL 210
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 477 RDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAA-QEEKIKALDEFATK 535
R+T+ + W++++E S+ ++G D V L K DF + A +E++ ++ F +
Sbjct: 8 RETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIER 67
Query: 536 LIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQF 581
LI+ H A +A+ +D L + A LLE R +L SY ++
Sbjct: 68 LIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRY 113
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 262 RFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL-EDKVSTLGAE 320
+ R+ D+ WI+EK+ V SS E G+D V L+ K R+ A+ +++V + A
Sbjct: 5 QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAF 64
Query: 321 ADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFL 370
+RL I + + E W L R Q L SY LHR+
Sbjct: 65 IERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYF 114
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 71/150 (47%), Gaps = 3/150 (2%)
Query: 836 QFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNA-NKTRMDEITST 893
Q +R+ D+ + W++EK L ++ + D ++ K ++F +E A + R+D + +
Sbjct: 5 QLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAF 64
Query: 894 GQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWL 953
+ L++A H + I + + + +W L + + L + + T +I L L
Sbjct: 65 IERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEI-LGL 123
Query: 954 SEIEGQLMSEDYGKDLTSVQNLQKKHALLE 983
+ + + + ED G D ++ ++ + H E
Sbjct: 124 IDEKHRELPEDVGLDASTAESFHRVHTAFE 153
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 942 FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVAS-HLDRIESVKAAT 1000
R +D+E W+SE E S + G+D V L+ K + + +R+++V A
Sbjct: 6 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI 65
Query: 1001 EQFLERGHFDADNIKAKQAAMCERYENL 1028
E+ ++ GH +A I + + E + +L
Sbjct: 66 ERLIDAGHSEAATIAEWKDGLNEMWADL 93
>pdb|2SPC|A Chain A, Crystal Structure Of The Repetitive Segments Of Spectrin
pdb|2SPC|B Chain B, Crystal Structure Of The Repetitive Segments Of Spectrin
Length = 107
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 73/104 (70%), Gaps = 4/104 (3%)
Query: 468 QCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIK 527
Q +DLQL+ RD E A++WM+ +EAFL+ +D ++ +VEALIKKHEDF+K++ E+KI
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 528 ALDEFATKLIEGQHYAADDVAQRRDLLLKR----RAGLLEKSAR 567
AL A +LI HYA++ V ++R +L+R + GL+EK +R
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSR 104
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 74/118 (62%), Gaps = 18/118 (15%)
Query: 710 QCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIK 769
Q +DLQL+ RD E A++WM+ +EAFL+ +D ++ +VEALIKKHEDF+K++ E+KI
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 770 ALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKR----RAGLLEKSAR 823
AL + A +LI HYA++ V ++R +L+R + GL+EK +R
Sbjct: 61 ALQTV--------------ADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSR 104
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 834 FQQFERDCDETKSWVTEKLKFAN-DDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
Q + RDC+ +SW++ + F N DD+ N+ ++KH++F++ +N ++ ++ + +
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQT 64
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKL 933
+L+ NHYAS+ + ++ +Q++ W L +K ++L
Sbjct: 65 VADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRL 105
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 58/105 (55%)
Query: 150 QALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVT 209
Q L L ++R C+ W++ +EAF+ AD+ +VE L +K ++F K + E ++
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 210 EVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKL 254
+ +AD+L+ + H + +++++ E W LK+ + ++ +L
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRL 105
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 49 FQYFKRDADELESWIYEK---LQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVL 105
Q + RD + ESW+ + L A D+ N++A I+KH+ F+ + H I L
Sbjct: 5 LQLYMRDCELAESWMSAREAFLNA--DDDANAGGNVEALIKKHEDFDKAINGHEQKIAAL 62
Query: 106 DNTGKEMINQNHFASEVI 123
++I QNH+AS ++
Sbjct: 63 QTVADQLIAQNHYASNLV 80
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 50/91 (54%)
Query: 259 EIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLG 318
++Q + RD + +W++ ++A L++D+ +V+ L +KHE ++ + E K++ L
Sbjct: 4 DLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQ 63
Query: 319 AEADRLCGIHSDHGDQIQAKRAEIVEYWERL 349
AD+L + + + KR +++E W L
Sbjct: 64 TVADQLIAQNHYASNLVDEKRKQVLERWRHL 94
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 378 SWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA 437
SW+S +A ++AD+ A EAL+++H++ I+ E L+ +NHYA
Sbjct: 17 SWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYA 76
Query: 438 ADDIREK 444
++ + EK
Sbjct: 77 SNLVDEK 83
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 620 SWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA 679
SW+S +A ++AD+ A EAL+++H++ I+ E L+ +NHYA
Sbjct: 17 SWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYA 76
Query: 680 ADDIREK 686
++ + EK
Sbjct: 77 SNLVDEK 83
Score = 36.2 bits (82), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%)
Query: 940 QGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAA 999
Q + R E E W+S E L ++D +V+ L KKH + + H +I +++
Sbjct: 6 QLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTV 65
Query: 1000 TEQFLERGHFDADNIKAKQAAMCERYENLQRPI 1032
+Q + + H+ ++ + K+ + ER+ +L+ +
Sbjct: 66 ADQLIAQNHYASNLVDEKRKQVLERWRHLKEGL 98
>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
Spectrin
Length = 214
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 110/211 (52%), Gaps = 7/211 (3%)
Query: 369 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428
FL D D +W+S + ++++++ + + AE LL++H K EID +DS++ ++G+
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 429 SLL----DRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADT 484
++ D + + ++L L+ L +WE R QC+ Q F +D +QA+
Sbjct: 65 KVIQGQTDPEYLL---LGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEA 121
Query: 485 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAA 544
++ QE L++ + DSL++ EA I+K EDF S+ +K+ + + KL+ + +
Sbjct: 122 ILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYS 181
Query: 545 DDVAQRRDLLLKRRAGLLEKSARRRAILEDS 575
D + ++ L+ R EK+ +L D+
Sbjct: 182 DKIKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 110/210 (52%), Gaps = 12/210 (5%)
Query: 611 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 670
FL D D +W+S + ++++++ + + AE LL++H K EID +DS++ ++G+
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 671 SLL----DRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADT 726
++ D + + ++L L+ L +WE R QC+ Q F +D +QA+
Sbjct: 65 KVIQGQTDPEYLL---LGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEA 121
Query: 727 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD----LLKVNTMQI 782
++ QE L++ + DSL++ EA I+K EDF S+ +K+ + D L+ +
Sbjct: 122 ILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYS 181
Query: 783 KALDEFATKLIEGQHYAADDVAQRRDLLLK 812
+ E +LIE +H ++ AQ +LL+
Sbjct: 182 DKIKE-KVQLIEDRHRKNNEKAQEASVLLR 210
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 87/191 (45%), Gaps = 1/191 (0%)
Query: 261 QRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAE 320
Q F +D D+ AW++ ++S++ L + L ++H G++ ++ +D +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 321 ADRLCGIHSDHGDQIQAKRAEIVEY-WERLTGKAKGRKQKLDESYYLHRFLADYRDLISW 379
+++ +D + +R E ++ W+ L + R L + F D + +
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 380 VSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAAD 439
+S+ + ++ E + AEA + + ++ G ++ D D+G L+ + +D
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 440 DIREKLRNLEN 450
I+EK++ +E+
Sbjct: 183 KIKEKVQLIED 193
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 91/220 (41%), Gaps = 29/220 (13%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
Q F +D + W++ + +++ED+ +SL E L+++H + + ++ + + E
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
K+I+GQ LLL +R E + W+ L
Sbjct: 63 GEKVIQGQ-------TDPEYLLLGQR----------------------LEGLDTGWDALG 93
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
+ R L + F D + + +S+ + ++ E + AEA + + ++
Sbjct: 94 RMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFL 153
Query: 653 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLEN 692
G ++ D D+G L+ + +D I+EK++ +E+
Sbjct: 154 GSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIED 193
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 939 QQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKA 998
+Q F + ++D + WLS + + SED + L + L ++HA ++ ++ H D + VK
Sbjct: 2 EQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 999 ATEQFLE 1005
+ E+ ++
Sbjct: 62 SGEKVIQ 68
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/214 (18%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
Q F +D + W++ + +++ED+ +SL E L+++H + + ++
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDS------- 55
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKS--------ARRRA 826
+ + E K+I+GQ LLL +R L+ R
Sbjct: 56 -------YQRVKESGEKVIQGQ-------TDPEYLLLGQRLEGLDTGWDALGRMWESRSH 101
Query: 827 ILEDSYKFQQFERDCDETKSWVT-EKLKFANDDNYLDPTN----LNGKVQKHQNFEQELN 881
L FQ+F++D + ++ ++ ++ A +L+P + ++K ++F +
Sbjct: 102 TLAQCLGFQEFQKDAKQAEAILSNQEYTLA----HLEPPDSLEAAEAGIRKFEDFLGSME 157
Query: 882 ANKTRMDEITSTGQELLEANHYASDKIRQRMEQI 915
N+ ++ +G +L+ + SDKI+++++ I
Sbjct: 158 NNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLI 191
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 3/184 (1%)
Query: 157 FIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLAD 216
F++ D+ W++ + V +++ L E L ++ + ++ + V + +
Sbjct: 5 FLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGE 64
Query: 217 KLVLEGH--PERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWI 274
K V++G PE + +R E L W L ++ R L Q F +DA + A +
Sbjct: 65 K-VIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAIL 123
Query: 275 AEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQ 334
+ ++ L+ E L + + RK E + DKV + ++L + + D+
Sbjct: 124 SNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDK 183
Query: 335 IQAK 338
I+ K
Sbjct: 184 IKEK 187
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 2/176 (1%)
Query: 50 QYFKRDADELESWIYEKLQAASDESYKET-TNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
Q F +D D+ ++W+ +A + E E+ + +Q+H + E+ H ++ + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 109 GKEMI-NQNHFASEVIXXXXXXXXXXXXXXXXXXAEKGMKLQQALVLVQFIRQCDEVMFW 167
G+++I Q ++ + L Q L +F + +
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 168 INDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGH 223
++++E + E LE E RKF++F M + +V +KLV EG+
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGN 178
>pdb|1AJ3|A Chain A, Solution Structure Of The Spectrin Repeat, Nmr, 20
Structures
Length = 110
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 67/109 (61%)
Query: 253 KLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALED 312
KL +H + +F RD D+ +WI EK ++SS++YGRDL VQ L++KH+ +E +LAA E
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 313 KVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLD 361
+ + +L ++ ++IQ + A+ V++W+ L A R Q+L+
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 110
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 826 AILEDSYKFQQFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNANK 884
A L +S++ QF RD D+ +SW+ EK L +++D D T + +KH+ E EL A++
Sbjct: 1 AKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHE 60
Query: 885 TRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQ 934
+ + TG++L + N ++I+QR+ Q V W+ L +G +L+
Sbjct: 61 PAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLE 110
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 359 KLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 418
KL+ES+ LH+F D D SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 419 SFRGTADAGQSLLDRNHYAADDIREKL 445
+ +G D G+ L D N ++I+++L
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRL 88
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 54/87 (62%)
Query: 601 KLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 660
KL+ES+ LH+F D D SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 661 SFRGTADAGQSLLDRNHYAADDIREKL 687
+ +G D G+ L D N ++I+++L
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRL 88
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%)
Query: 932 KLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLD 991
KL E+ + F R ++D E W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 992 RIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030
I+ V ++ + + I+ + A + ++ L++
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQ 100
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 42 KLEDSRRFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSN 100
KL +S R F RD D+ ESWI EK S E Y ++ T +Q +KH+ EAE+AAH
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 101 AIVVLDNTGKEMINQNHFASEVI 123
AI + +TGK++ + N E I
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEI 84
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%)
Query: 147 KLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEY 206
KL ++ L QF R D+ WI +K+ V+++++G DL V+ L++K + ++A+ E
Sbjct: 2 KLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 61
Query: 207 RVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKL 254
+ V KL + +E I +R + + W LKQLA R ++L
Sbjct: 62 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 109
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDE 531
L F+RD + ++W+ +++ +S+ED G L V+ L KKH+ E LAA E I+ + +
Sbjct: 9 LHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLD 68
Query: 532 FATKLIEGQHYAADDVAQR 550
KL + +++ QR
Sbjct: 69 TGKKLSDDNTIGKEEIQQR 87
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
L F+RD + ++W+ +++ +S+ED G L V+ L KKH+ E LAA E I+ + D
Sbjct: 9 LHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLD 68
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 950 ELWLSEIEGQLMSEDY-GKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGH 1008
E W E L +DY L+ ++ L KKH E+D+A+H DR+E + A ++ E +
Sbjct: 383 ESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDY 442
Query: 1009 FDADNIKAKQAAMCERYENL 1028
+D+ ++ A+ +C++++NL
Sbjct: 443 YDSPSVNARCQKICDQWDNL 462
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 18/195 (9%)
Query: 187 VEVLQRKFDEFQ------KDMASQEYRVTEVN--QLADKLVLEGHPE-RETIVRRKEELS 237
++ +Q+K ++F+ K QE E+N L KL L P + + +++
Sbjct: 282 MQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDIN 341
Query: 238 EAWMRLKQLALMRQEKLFGA--------HEIQRFNRDADETVAWIAEKDAVLSSDEY-GR 288
AW L+Q +E L H ++F + A +W K+A+L +Y
Sbjct: 342 NAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKEAMLQQKDYETA 401
Query: 289 DLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWER 348
L+ ++ L +KHE E DLAA +D+V + A A L + + A+ +I + W+
Sbjct: 402 TLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDN 461
Query: 349 LTGKAKGRKQKLDES 363
L + R++ L+ +
Sbjct: 462 LGALTQKRREALERT 476
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 870 VQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKK 929
++KH+ FE +L A++ R+++I + QEL E ++Y S + R ++I W++L T+K+
Sbjct: 410 LKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKR 469
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 483 DTWMAKQEAFLSNEDL-GDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQH 541
++W +EA L +D +L ++AL+KKHE FE LAA +++++ + A +L E +
Sbjct: 383 ESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDY 442
Query: 542 YAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF 578
Y + V R + + L + +RR LE + K
Sbjct: 443 YDSPSVNARCQKICDQWDNLGALTQKRREALERTEKL 479
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/331 (18%), Positives = 143/331 (43%), Gaps = 22/331 (6%)
Query: 620 SWVSDMKAIIS-ADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 678
SW +A++ D ++ +ALL++H+ + ++ A +D A Q L + ++Y
Sbjct: 384 SWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYY 443
Query: 679 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-----QLFYRDTEQA---DTWMAK 730
+ + + + + + +L L ++RR E+ L QL+ ++A + WM
Sbjct: 444 DSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEG 503
Query: 731 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFAT 790
L + + +++ ++ L HE F+ +L +++ +A +L ++ K + +
Sbjct: 504 AMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQA---ILGIHNEVSKIVQTYHV 560
Query: 791 KLIEGQHYAADDVAQ-------RRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDE 843
+ Y + R L+ +R L+E+ AR++ ++ +QF +
Sbjct: 561 NMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQ---QNERLRKQFGAQANV 617
Query: 844 TKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHY 903
W+ K++ + L ++ + +E+ + K ++D++ Q++ EA +
Sbjct: 618 IGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIF 677
Query: 904 ASDKIRQRMEQIVHLWESLATATEKKGNKLQ 934
+ ME I WE L T + N+++
Sbjct: 678 DNKHTNYTMEHIRVGWEQLLTTIARTINEVE 708
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 725 DTWMAKQEAFLSNEDL-GDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIK 783
++W +EA L +D +L ++AL+KKHE FE LAA +++++ QI
Sbjct: 383 ESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVE-----------QIA 431
Query: 784 ALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF 834
A+ A +L E +Y + V R + + L + +RR LE + K
Sbjct: 432 AI---AQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKL 479
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 167 WINDKEAFVTADEF-GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPE 225
W + KEA + ++ A L ++ L +K + F+ D+A+ + RV ++ +A +L + +
Sbjct: 385 WTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYD 444
Query: 226 RETIVRRKEELSEAWMRLKQLALMRQEKL 254
++ R +++ + W L L R+E L
Sbjct: 445 SPSVNARCQKICDQWDNLGALTQKRREAL 473
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 378 SWVSDMKAIIS-ADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
SW +A++ D ++ +ALL++H+ + ++ A +D A Q L + ++Y
Sbjct: 384 SWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYY 443
Query: 437 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-----QLFYRDTEQA---DTWMAK 488
+ + + + + + +L L ++RR E+ L QL+ ++A + WM
Sbjct: 444 DSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEG 503
Query: 489 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLA---AQEEKIKALDEFATKLIEGQH 541
L + + +++ ++ L HE F+ +L + + I + +K+++ H
Sbjct: 504 AMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYH 559
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 52 FKRDADELESWIYEKLQAASDESYKETT--NLQAKIQKHQAFEAEVAAHSNAIVVLDNTG 109
F++ A ESW K + Y+ T ++A ++KH+AFE+++AAH + + +
Sbjct: 375 FRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIA 434
Query: 110 KEMINQNHFASEVI 123
+E+ +++ S +
Sbjct: 435 QELNELDYYDSPSV 448
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 157 FIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQK-DMASQEYRVTEV---- 211
++++ +E++ WINDK+A + + +FG +E V+ E++K + + V+E+
Sbjct: 771 YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIY 830
Query: 212 NQLADKL-VLEGHPERETIVRRKEELSEAWMRLKQ----------LALMRQEKLFGAHEI 260
N L KL +++ P E+ W L++ + L RQ+K+ A +
Sbjct: 831 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI--AVLL 888
Query: 261 QRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
Q++NR + W K L S+E G + +VQ + E + + +LE + ++
Sbjct: 889 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS 944
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/247 (18%), Positives = 109/247 (44%), Gaps = 17/247 (6%)
Query: 355 GRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEH----- 409
R+Q+L +L +L+ W++D +A + + + + ++ + H+E+
Sbjct: 757 AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 816
Query: 410 --KGEIDAREDSFRGTADAGQSLLDRNHYAA------DDIREKLRNLEN-DKTHLLTLWE 460
KG+ + ++ + L+ R + A ++I LE ++ H L
Sbjct: 817 PPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRI 876
Query: 461 ERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLA 520
E + + + LQ + R ++ + W + +L + + GDS+ +V+A +K E F+
Sbjct: 877 ELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQ 936
Query: 521 AQEEKIKA-LDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSAR--RRAILEDSYK 577
+ E + + L +L E + ++ +R+D ++ ++ SA + +L + +
Sbjct: 937 SLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996
Query: 578 FQQFEEI 584
Q+ E++
Sbjct: 997 LQKIEDL 1003
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 597 GRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEH----- 651
R+Q+L +L +L+ W++D +A + + + + ++ + H+E+
Sbjct: 757 AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEK 816
Query: 652 --KGEIDAREDSFRGTADAGQSLLDRNHYAA------DDIREKLRNLEN-DKTHLLTLWE 702
KG+ + ++ + L+ R + A ++I LE ++ H L
Sbjct: 817 PPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRI 876
Query: 703 ERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFE---K 759
E + + + LQ + R ++ + W + +L + + GDS+ +V+A +K E F+ +
Sbjct: 877 ELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQ 936
Query: 760 SLAAQEEK--IKALDDLLKVNTMQIKALDE 787
SL Q + L L ++N + L E
Sbjct: 937 SLEGQSNSDLLSILAQLTELNYNGVPELTE 966
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 236 LSEAWMRLKQLALM---RQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLAS 292
+++ + R QLA + R+++L + + A+E V WI +K A L S ++G + S
Sbjct: 741 ITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIES 800
Query: 293 VQTLQRKHE 301
VQ+ H+
Sbjct: 801 VQSFMNAHK 809
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 157 FIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQK-DMASQEYRVTEV---- 211
++++ +E++ WINDK+A + + +FG +E V+ E++K + + V+E+
Sbjct: 763 YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIY 822
Query: 212 NQLADKL-VLEGHPERETIVRRKEELSEAWMRLKQ----------LALMRQEKLFGAHEI 260
N L KL +++ P E+ W L++ + L RQ+K+ A +
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI--AVLL 880
Query: 261 QRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
Q++NR + W K L S+E G + +VQ + E + + +LE + ++
Sbjct: 881 QKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS 936
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/233 (18%), Positives = 104/233 (44%), Gaps = 17/233 (7%)
Query: 369 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK-------GEIDAREDSFR 421
+L +L+ W++D +A + + + + ++ + H+E+K G+ + ++
Sbjct: 763 YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIY 822
Query: 422 GTADAGQSLLDRNHYAA------DDIREKLRNLEN-DKTHLLTLWEERRILYEQCMDLQL 474
+ L+ R + A ++I LE ++ H L E + + + LQ
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 882
Query: 475 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKA-LDEFA 533
+ R ++ + W + +L + + GDS+ +V+A +K E F+ + E + + L
Sbjct: 883 YNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942
Query: 534 TKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSAR--RRAILEDSYKFQQFEEI 584
+L E + ++ +R+D ++ ++ SA + +L + + Q+ E++
Sbjct: 943 AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 995
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 86/196 (43%), Gaps = 19/196 (9%)
Query: 611 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK-------GEIDAREDSFR 663
+L +L+ W++D +A + + + + ++ + H+E+K G+ + ++
Sbjct: 763 YLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIY 822
Query: 664 GTADAGQSLLDRNHYAA------DDIREKLRNLEN-DKTHLLTLWEERRILYEQCMDLQL 716
+ L+ R + A ++I LE ++ H L E + + + LQ
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQK 882
Query: 717 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFE---KSLAAQEEK--IKAL 771
+ R ++ + W + +L + + GDS+ +V+A +K E F+ +SL Q + L
Sbjct: 883 YNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942
Query: 772 DDLLKVNTMQIKALDE 787
L ++N + L E
Sbjct: 943 AQLTELNYNGVPELTE 958
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 18/193 (9%)
Query: 187 VEVLQRKFDEFQ------KDMASQEYRVTEVN--QLADKLVLEGHPE-RETIVRRKEELS 237
++ +Q+K ++F+ K QE E+N L KL + P + + +++
Sbjct: 43 MQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIA 102
Query: 238 EAWMRLKQLALMRQEKLFGA--------HEIQRFNRDADETVAWIAEKDAVLSSDEY-GR 288
AW RL+Q +E L H ++F + A W K+ +L +Y
Sbjct: 103 GAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESA 162
Query: 289 DLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWER 348
L V+ L RKHE E DLAA +D+V + A A L + + + +I + W+R
Sbjct: 163 SLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDR 222
Query: 349 LTGKAKGRKQKLD 361
L + R++ L+
Sbjct: 223 LGTLTQKRREALE 235
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 950 ELWLSEIEGQLMSEDY-GKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGH 1008
E W E L+ +DY LT V+ L +KH E+D+A+H DR+E + A ++ E +
Sbjct: 144 ETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDY 203
Query: 1009 FDADNIKAKQAAMCERYENL 1028
DA N+ + +C++++ L
Sbjct: 204 HDAVNVNDRCQKICDQWDRL 223
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 833 KFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
KF+Q + ET ++ E++ D T + ++KH+ FE +L A++ R+++I +
Sbjct: 135 KFRQ-KASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAA 193
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQ 934
QEL E +++ + + R ++I W+ L T T+K+ L+
Sbjct: 194 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALE 235
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/307 (20%), Positives = 134/307 (43%), Gaps = 21/307 (6%)
Query: 643 ALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWE 702
ALL +H+ + ++ A +D A Q L + +++ A ++ ++ + + + L TL +
Sbjct: 169 ALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQ 228
Query: 703 ERR-------ILYEQCMDLQL-FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKH 754
+RR L E L L F + + WM L + + S++ +++LI H
Sbjct: 229 KRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAH 288
Query: 755 EDFEKSLA---AQEEKIKALDD----LLKVNTMQIKALDEFATKLIEGQHYAADDVAQRR 807
E F+ +L + + I A+ + +++ ++I + + ++T ++ D V Q
Sbjct: 289 EQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQ-- 346
Query: 808 DLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLN 867
L+ R L E+ AR+ A + +QF + W+ K++ + L
Sbjct: 347 -LVPIRDQSLQEELARQHA---NERLRRQFAAQANAIGPWIQNKMEEIARSSIQITGALE 402
Query: 868 GKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATE 927
++ + + +E + K +D++ Q + EA + + ME I WE L T
Sbjct: 403 DQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIA 462
Query: 928 KKGNKLQ 934
+ N+++
Sbjct: 463 RTINEVE 469
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 475 FYRDTEQADTWMAKQEAFLSNEDL-GDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFA 533
F + +TW +E L +D SL V AL++KHE FE LAA +++++ + A
Sbjct: 136 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 195
Query: 534 TKLIEGQHYAADDVAQR 550
+L E ++ A +V R
Sbjct: 196 QELNELDYHDAVNVNDR 212
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 129/294 (43%), Gaps = 29/294 (9%)
Query: 270 TVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVE-RDLAALEDKVSTLGAE---ADRLC 325
T+ W+ + + + L + +RKH+ + ++ LE +TL + ++R
Sbjct: 30 TIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEINFNTLQTKLRISNRPA 89
Query: 326 GIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQ-KLDESYYLHRF--LAD-YRDLIS--- 378
+ S+ G + ++I W+RL KG ++ L+E L R LA+ +R S
Sbjct: 90 FMPSE-GKMV----SDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHE 144
Query: 379 -WVSDMKAII-SADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
W + I+ D + + ALL +H+ + ++ A +D A Q L + +++
Sbjct: 145 TWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYH 204
Query: 437 AADDIREKLRNLENDKTHLLTLWEERR-------ILYEQCMDLQL-FYRDTEQADTWMAK 488
A ++ ++ + + + L TL ++RR L E L L F + + WM
Sbjct: 205 DAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEG 264
Query: 489 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLA---AQEEKIKALDEFATKLIEG 539
L + + S++ +++LI HE F+ +L + + I A+ K+I+
Sbjct: 265 AMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQS 318
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 52 FKRDADELESWIYEKLQAASDESYKET--TNLQAKIQKHQAFEAEVAAHSNAI 102
F++ A E+W Y K Q + Y+ T ++A ++KH+AFE+++AAH + +
Sbjct: 136 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRV 188
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats From
Alpha-Actinin
Length = 250
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 950 ELWLSEIEGQLMSEDY-GKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGH 1008
E W E L+ +DY LT V+ L +KH E+D+A+H DR+E + A ++ E +
Sbjct: 27 ETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDY 86
Query: 1009 FDADNIKAKQAAMCERYENL 1028
DA N+ + +C++++ L
Sbjct: 87 HDAVNVNDRCQKICDQWDRL 106
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 258 HEIQRFNRDADETVAWIAEKDAVLSSDEY-GRDLASVQTLQRKHEGVERDLAALEDKVST 316
H ++F + A W K+ +L +Y L V+ L RKHE E DLAA +D+V
Sbjct: 14 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 73
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLD 361
+ A A L + + + +I + W+RL + R++ L+
Sbjct: 74 IAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALE 118
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 833 KFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
KF+Q + ET ++ E++ D T + ++KH+ FE +L A++ R+++I +
Sbjct: 18 KFRQ-KASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAA 76
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQ 934
QEL E +++ + + R ++I W+ L T T+K+ L+
Sbjct: 77 IAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALE 118
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 475 FYRDTEQADTWMAKQEAFLSNEDL-GDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFA 533
F + +TW +E L +D SL V AL++KHE FE LAA +++++ + A
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 534 TKLIEGQHYAADDVAQRRDLLLKR--RAGLLEKSARRRAILE 573
+L E ++ A +V R + + R G L + +RR LE
Sbjct: 79 QELNELDYHDAVNVNDRCQKICDQWDRLGTL--TQKRREALE 118
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 52 FKRDADELESWIYEKLQAASDESYKET--TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTG 109
F++ A E+W Y K Q + Y+ T ++A ++KH+AFE+++AAH + + +
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIA 78
Query: 110 KEM 112
+E+
Sbjct: 79 QEL 81
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 24/202 (11%)
Query: 643 ALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWE 702
ALL +H+ + ++ A +D A Q L + +++ A ++ ++ + + + L TL +
Sbjct: 52 ALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQ 111
Query: 703 ERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSN------EDLGD-----SLDSVEALI 751
+RR E+ ++ +Q AK+ A +N EDL D S++ +++LI
Sbjct: 112 KRREALER---MEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLI 168
Query: 752 KKHEDFEKSLA---AQEEKIKALDD----LLKVNTMQIKALDEFATKLIEGQHYAADDVA 804
HE F+ +L + + I A+ + +++ ++I + + ++T ++ D V
Sbjct: 169 TAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVK 228
Query: 805 QRRDLLLKRRAGLLEKSARRRA 826
Q L+ R L E+ AR+ A
Sbjct: 229 Q---LVPIRDQSLQEELARQHA 247
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 717 FYRDTEQADTWMAKQEAFLSNEDL-GDSLDSVEALIKKHEDFEKSLAAQEEKIKAL 771
F + +TW +E L +D SL V AL++KHE FE LAA +++++ +
Sbjct: 19 FRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQI 74
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 401 ALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWE 460
ALL +H+ + ++ A +D A Q L + +++ A ++ ++ + + + L TL +
Sbjct: 52 ALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQ 111
Query: 461 ERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSN------EDLGD-----SLDSVEALI 509
+RR E+ ++ +Q AK+ A +N EDL D S++ +++LI
Sbjct: 112 KRREALER---MEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLI 168
Query: 510 KKHEDFEKSLA---AQEEKIKALDEFATKLIEG 539
HE F+ +L + + I A+ K+I+
Sbjct: 169 TAHEQFKATLPEADGERQSIMAIQNEVEKVIQS 201
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 167 WINDKEAFVTADEF-GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPE 225
W KE + ++ A L V L RK + F+ D+A+ + RV ++ +A +L + +
Sbjct: 29 WAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHD 88
Query: 226 RETIVRRKEELSEAWMRLKQLALMRQEKL 254
+ R +++ + W RL L R+E L
Sbjct: 89 AVNVNDRCQKICDQWDRLGTLTQKRREAL 117
>pdb|2IAK|A Chain A, Crystal Structure Of A Protease Resistant Fragment Of The
Plakin Domain Of Bullous Pemphigoid Antigen1 (Bpag1)
Length = 224
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 24/174 (13%)
Query: 273 WIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALED-----KVSTLGAEADRLCGI 327
W+ E L E+G DL SV++ H+ V R + E K+S + A L
Sbjct: 35 WVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP-LKLS 93
Query: 328 HSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAII 387
++D +++++ A +L ++ +++ LD LH F+ + + W+++ +
Sbjct: 94 YTDKLHRLESQYA-------KLLNTSRNQERHLD---TLHNFVTRATNELIWLNEKE--- 140
Query: 388 SADELAKDVAGAEALLER----HQEHKGEIDAREDSFRGTADAGQSLLDRNHYA 437
E+A D + + + R H E E++ +E+S + + + LL NH A
Sbjct: 141 -ESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPA 193
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 153 VLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVN 212
L F+ + + W+N+KE A ++ V + E +++ +E + V
Sbjct: 121 TLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQ 180
Query: 213 QLADKLVLEGHPERETIVRRKEELSEAWMRLKQLA 247
++A++L+LE HP R TI + + W + QL
Sbjct: 181 EIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLC 215
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 67/178 (37%), Gaps = 22/178 (12%)
Query: 374 RDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR--------GTAD 425
+DL++WV +M+ + E D+ E+ LE H+ I+ E S + TA
Sbjct: 30 QDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP 89
Query: 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485
S D+ H + L N + HL T L F W
Sbjct: 90 LKLSYTDKLHRLESQYAKLLNTSRNQERHLDT--------------LHNFVTRATNELIW 135
Query: 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYA 543
+ ++E D + SV H + + L +EE IKA+ E A +L+ H A
Sbjct: 136 LNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPA 193
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 616 RDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR--------GTAD 667
+DL++WV +M+ + E D+ E+ LE H+ I+ E S + TA
Sbjct: 30 QDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAP 89
Query: 668 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTL 700
S D+ H + L N + HL TL
Sbjct: 90 LKLSYTDKLHRLESQYAKLLNTSRNQERHLDTL 122
>pdb|3PDY|A Chain A, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
pdb|3PDY|B Chain B, Structure Of The Third And Fourth Spectrin Repeats Of The
Plakin Domain Of Plectin
Length = 210
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLE----HVEVLQRKFDEFQKDMASQEYRVT 209
L F+ + + W+N+KE +E G D ++ + + +++ +E ++
Sbjct: 107 LHSFVAAATKELMWLNEKEE----EEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIK 162
Query: 210 EVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALM 249
E+ D+L+ E HP R T+ + L W + QL
Sbjct: 163 ELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCC 202
>pdb|3PE0|A Chain A, Structure Of The Central Region Of The Plakin Domain Of
Plectin
pdb|3PE0|B Chain B, Structure Of The Central Region Of The Plakin Domain Of
Plectin
Length = 283
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLE----HVEVLQRKFDEFQKDMASQEYRVT 209
L F+ + + W+N+KE +E G D ++ + + +++ +E ++
Sbjct: 10 LHSFVAAATKELMWLNEKEE----EEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIK 65
Query: 210 EVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALM 249
E+ D+L+ E HP R T+ + L W + QL
Sbjct: 66 ELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCC 105
>pdb|3V8X|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 904
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 384 KAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ--SLLDRNHYAADDI 441
+ + + LA + GAEALL GEI A ED+ RG + + D ++YA +
Sbjct: 190 RGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIV 249
Query: 442 REKLRN 447
+E+ +N
Sbjct: 250 KEECKN 255
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 626 KAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ--SLLDRNHYAADDI 683
+ + + LA + GAEALL GEI A ED+ RG + + D ++YA +
Sbjct: 190 RGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIV 249
Query: 684 REKLRN 689
+E+ +N
Sbjct: 250 KEECKN 255
>pdb|3V89|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 904
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 384 KAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ--SLLDRNHYAADDI 441
+ + + LA + GAEALL GEI A ED+ RG + + D ++YA +
Sbjct: 190 RGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIV 249
Query: 442 REKLRN 447
+E+ +N
Sbjct: 250 KEECKN 255
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 626 KAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ--SLLDRNHYAADDI 683
+ + + LA + GAEALL GEI A ED+ RG + + D ++YA +
Sbjct: 190 RGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIV 249
Query: 684 REKLRN 689
+E+ +N
Sbjct: 250 KEECKN 255
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 166 FWINDKEAFVTA--DEFGADLEHVEVLQRKFDEFQKDMASQE-YRVTEVNQLADKLVLEG 222
F+ N F T ++FG H+ VLQR FD+ K M + E YRV E N + L+L
Sbjct: 17 FYFNSDRWFHTLFRNQFG----HLRVLQR-FDQRSKQMQNLENYRVVEFNSKPNTLLLPH 71
Query: 223 H 223
H
Sbjct: 72 H 72
>pdb|2QRI|A Chain A, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Wt, Beta-2microglobulin, And
Ovalbumin-Derived Peptide.
pdb|2QRI|B Chain B, Crystal Structure Of A Single Chain Trimer Composed Of The
Mhc I Heavy Chain H-2kb Wt, Beta-2microglobulin, And
Ovalbumin-Derived Peptide
Length = 422
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 196 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 246
Query: 636 KD 637
D
Sbjct: 247 SD 248
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 341 EIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELAK 394
E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 197 EGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVGS 247
Query: 395 D 395
D
Sbjct: 248 D 248
>pdb|1S7Q|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7R|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7S|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7T|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2kb In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
Length = 348
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 54 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 104
Query: 636 KD 637
D
Sbjct: 105 SD 106
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 341 EIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELAK 394
E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 55 EGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVGS 105
Query: 395 D 395
D
Sbjct: 106 D 106
>pdb|3TID|A Chain A, Crystal Structure Of The Lcmv Derived Peptide Gp34 In
Complex With The Murine Mhc Class I H-2 Kb
pdb|3TIE|A Chain A, Crystal Structure Of The Vaccinia Derived Peptide A11r In
Complex With The Murine Mhc Class I H-2 Kb
pdb|3TIE|D Chain D, Crystal Structure Of The Vaccinia Derived Peptide A11r In
Complex With The Murine Mhc Class I H-2 Kb
Length = 284
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 15/62 (24%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 61 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 111
Query: 636 KD 637
D
Sbjct: 112 SD 113
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 341 EIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELAK 394
E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 62 EGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVGS 112
Query: 395 D 395
D
Sbjct: 113 D 113
>pdb|1RJY|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpes Simplex Virus
Glycoprotein B Peptide
pdb|1RJY|D Chain D, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpes Simplex Virus
Glycoprotein B Peptide
pdb|1RJZ|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpies Simplex Virus
Mutant Glycoprotein B Peptide
pdb|1RJZ|D Chain D, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Herpies Simplex Virus
Mutant Glycoprotein B Peptide
Length = 280
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 54 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 104
Query: 636 KDVAGAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 688
D LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 105 SD----GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 23/113 (20%)
Query: 344 EYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELAKDVA 397
EYWER T KAKG +Q F D R L+ + + K +IS E+ D
Sbjct: 58 EYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSD-- 106
Query: 398 GAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 446
LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 107 --GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
>pdb|1T0N|A Chain A, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|1T0N|D Chain D, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
Length = 278
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 54 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 104
Query: 636 KDVAGAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 688
D LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 105 SD----GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 23/113 (20%)
Query: 344 EYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELAKDVA 397
EYWER T KAKG +Q F D R L+ + + K +IS E+ D
Sbjct: 58 EYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSD-- 106
Query: 398 GAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 446
LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 107 --GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
>pdb|2CLV|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm8 Peptide
pdb|2CLV|H Chain H, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm8 Peptide
pdb|2CLZ|A Chain A, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm1 Peptide
pdb|2CLZ|H Chain H, Mhc Class I Natural Mutant H-2kbm8 Heavy Chain Complexed
With Beta-2 Microglobulin And Pbm1 Peptide
pdb|2OL3|H Chain H, Crystal Structure Of Bm3.3 Scfv Tcr In Complex With
Pbm8-h-2kbm8 Mhc Class I Molecule
Length = 279
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 54 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 104
Query: 636 KDVAGAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 688
D LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 105 SD----GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 23/113 (20%)
Query: 344 EYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELAKDVA 397
EYWER T KAKG +Q F D R L+ + + K +IS E+ D
Sbjct: 58 EYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSD-- 106
Query: 398 GAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 446
LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 107 --GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
>pdb|4HKJ|A Chain A, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|E Chain E, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|I Chain I, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
pdb|4HKJ|M Chain M, Structure Of Cowpox Cpxv203 In Complex With Mhci (H-2kb)
Length = 280
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 54 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 104
Query: 636 KDVAGAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 688
D LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 105 SD----GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
>pdb|1KJ3|H Chain H, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
pdb|1KJ3|I Chain I, Mhc Class I H-2kb Molecule Complexed With Pkb1 Peptide
pdb|3PAB|A Chain A, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-E1
pdb|3PAB|D Chain D, Crystal Structure Of H2-Kb In Complex With A Mutant Of The
Chicken Ovalbumin Epitope Ova-E1
Length = 279
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 55 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 105
Query: 636 KDVAGAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 688
D LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 106 SD----GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 158
>pdb|1NAN|H Chain H, Mch Class I H-2kb Molecule Complexed With Pbm1 Peptide
pdb|1NAN|L Chain L, Mch Class I H-2kb Molecule Complexed With Pbm1 Peptide
pdb|1T0M|A Chain A, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|1T0M|D Chain D, Conformational Switch In Polymorphic H-2k Molecules
Containing An Hsv Peptide
pdb|2ZSV|C Chain C, Crystal Structure Of H-2kb In Complex With Jhmv Epitope
S598
pdb|2ZSW|A Chain A, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|E Chain E, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|C Chain C, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|2ZSW|G Chain G, Crystal Structure Of H-2kb In Complex With The Q600y
Variant Of Jhmv Epitope S598
pdb|3P9L|A Chain A, Crystal Structure Of H2-Kb In Complex With The Chicken
Ovalbumin Epitope Ova
pdb|3P9L|D Chain D, Crystal Structure Of H2-Kb In Complex With The Chicken
Ovalbumin Epitope Ova
pdb|2ZSV|A Chain A, Crystal Structure Of H-2kb In Complex With Jhmv Epitope
S598
Length = 278
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 23/117 (19%)
Query: 582 EEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA------IISADELA 635
+E EYWER T KAKG +Q F D R L+ + + K +IS E+
Sbjct: 54 QEGPEYWERETQKAKGNEQS---------FRVDLRTLLGYYNQSKGGSHTIQVISGCEVG 104
Query: 636 KDVAGAEALLERHQEHKGE----IDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 688
D LL +Q++ + I ED TA +L+ ++ + E+LR
Sbjct: 105 SD----GRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLR 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,453,861
Number of Sequences: 62578
Number of extensions: 1160917
Number of successful extensions: 4549
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 4102
Number of HSP's gapped (non-prelim): 379
length of query: 1032
length of database: 14,973,337
effective HSP length: 109
effective length of query: 923
effective length of database: 8,152,335
effective search space: 7524605205
effective search space used: 7524605205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)