Query psy6936
Match_columns 1032
No_of_seqs 201 out of 2070
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 22:32:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 100.0 2.2E-95 5E-100 828.5 123.1 995 22-1032 382-1469(2473)
2 KOG0517|consensus 100.0 2.9E-92 6.4E-97 803.1 121.3 971 12-1030 701-1679(2473)
3 KOG0040|consensus 100.0 3.1E-82 6.7E-87 706.3 111.8 1009 6-1030 3-1683(2399)
4 KOG0040|consensus 100.0 2.7E-62 5.8E-67 547.0 100.2 963 14-1026 751-1891(2399)
5 cd00176 SPEC Spectrin repeats, 99.8 4.4E-17 9.5E-22 167.5 28.3 210 154-363 2-212 (213)
6 cd00176 SPEC Spectrin repeats, 99.8 6.4E-17 1.4E-21 166.3 27.9 210 260-469 2-212 (213)
7 KOG4286|consensus 99.6 2.9E-13 6.2E-18 146.4 24.4 291 715-1030 4-322 (966)
8 KOG4286|consensus 99.5 3E-12 6.5E-17 138.7 27.5 305 155-470 4-335 (966)
9 smart00150 SPEC Spectrin repea 99.1 5.4E-10 1.2E-14 98.7 12.2 99 262-360 2-100 (101)
10 PF00435 Spectrin: Spectrin re 99.1 1.1E-09 2.3E-14 97.7 13.7 104 259-362 2-105 (105)
11 smart00150 SPEC Spectrin repea 99.1 9.3E-10 2E-14 97.2 12.7 100 156-255 2-101 (101)
12 PF00435 Spectrin: Spectrin re 99.1 2.2E-09 4.8E-14 95.6 14.0 103 154-256 3-105 (105)
13 TIGR00606 rad50 rad50. This fa 98.8 0.0029 6.3E-08 82.1 101.2 35 635-669 708-742 (1311)
14 KOG4240|consensus 98.8 1.6E-05 3.4E-10 93.0 32.9 333 678-1030 241-587 (1025)
15 PRK04863 mukB cell division pr 98.4 0.028 6E-07 72.1 94.7 268 678-966 985-1269(1486)
16 KOG4240|consensus 98.3 0.00033 7.1E-09 82.3 27.9 144 436-579 241-386 (1025)
17 TIGR00606 rad50 rad50. This fa 98.3 0.042 9.2E-07 71.6 96.2 31 975-1005 1120-1151(1311)
18 PF12128 DUF3584: Protein of u 98.3 0.045 9.7E-07 70.5 82.3 127 583-712 718-857 (1201)
19 KOG0161|consensus 98.3 0.048 1E-06 70.4 97.8 157 801-962 1656-1819(1930)
20 PF12128 DUF3584: Protein of u 98.2 0.049 1.1E-06 70.1 72.9 141 682-831 711-856 (1201)
21 KOG4674|consensus 98.1 0.098 2.1E-06 66.4 99.6 183 294-476 394-605 (1822)
22 KOG0994|consensus 98.0 0.072 1.6E-06 62.8 52.8 121 340-466 1163-1290(1758)
23 PRK04863 mukB cell division pr 97.5 0.62 1.3E-05 60.3 93.0 122 904-1029 986-1122(1486)
24 PF06160 EzrA: Septation ring 97.3 0.66 1.4E-05 54.3 53.5 119 334-457 57-182 (560)
25 KOG0161|consensus 97.2 1.6 3.5E-05 57.0 100.2 133 802-956 1566-1707(1930)
26 KOG0994|consensus 97.0 1.3 2.9E-05 52.9 58.6 122 236-363 1165-1293(1758)
27 PF06160 EzrA: Septation ring 96.8 1.7 3.6E-05 51.1 48.1 100 300-403 346-446 (560)
28 PRK04778 septation ring format 96.6 2.5 5.3E-05 49.9 58.0 420 334-829 61-500 (569)
29 PRK04778 septation ring format 96.5 2.8 6.2E-05 49.4 50.5 116 332-461 378-494 (569)
30 PRK02224 chromosome segregatio 95.9 7.8 0.00017 49.1 70.1 41 442-482 508-549 (880)
31 PF08580 KAR9: Yeast cortical 95.7 6.3 0.00014 46.9 31.2 279 155-456 32-358 (683)
32 PRK02224 chromosome segregatio 95.4 11 0.00024 47.7 72.7 31 332-362 309-339 (880)
33 KOG4674|consensus 93.2 38 0.00081 44.5 101.9 346 16-365 195-600 (1822)
34 PF08580 KAR9: Yeast cortical 91.5 38 0.00082 40.6 33.0 113 227-350 238-358 (683)
35 PRK03918 chromosome segregatio 90.7 57 0.0012 41.4 68.3 22 36-57 144-165 (880)
36 PF13514 AAA_27: AAA domain 89.2 83 0.0018 41.0 85.6 98 158-255 255-370 (1111)
37 PF14643 DUF4455: Domain of un 88.9 50 0.0011 38.0 51.7 357 119-526 59-430 (473)
38 PF06008 Laminin_I: Laminin Do 88.3 36 0.00078 35.7 25.8 133 286-432 118-251 (264)
39 PRK03918 chromosome segregatio 85.8 1.1E+02 0.0024 38.8 72.5 6 687-692 461-466 (880)
40 PF06008 Laminin_I: Laminin Do 85.0 54 0.0012 34.4 26.9 131 181-326 119-251 (264)
41 PF04912 Dynamitin: Dynamitin 82.9 85 0.0018 35.1 23.3 57 80-137 88-144 (388)
42 PF04912 Dynamitin: Dynamitin 79.7 1.1E+02 0.0024 34.2 20.7 58 291-349 87-144 (388)
43 COG1196 Smc Chromosome segrega 76.7 2.5E+02 0.0055 36.8 82.2 11 906-916 1095-1105(1163)
44 PF13514 AAA_27: AAA domain 75.0 2.7E+02 0.0059 36.3 97.5 306 79-424 150-479 (1111)
45 TIGR02169 SMC_prok_A chromosom 74.1 3E+02 0.0064 36.4 80.8 9 964-972 1106-1114(1164)
46 KOG0035|consensus 73.7 3.8 8.3E-05 48.9 4.5 301 50-354 397-723 (890)
47 KOG0971|consensus 72.8 2.2E+02 0.0049 34.4 72.2 93 865-957 942-1039(1243)
48 COG4477 EzrA Negative regulato 72.5 1.8E+02 0.0038 33.0 48.8 171 645-824 346-521 (570)
49 PF11802 CENP-K: Centromere-as 71.0 1.3E+02 0.0028 30.9 16.5 122 610-738 20-146 (268)
50 PF05667 DUF812: Protein of un 69.7 2.4E+02 0.0052 33.4 32.6 82 185-276 505-589 (594)
51 TIGR03545 conserved hypothetic 66.0 2.6E+02 0.0056 32.9 16.9 77 20-107 164-240 (555)
52 PF10498 IFT57: Intra-flagella 63.1 2.2E+02 0.0049 31.2 14.8 11 56-66 45-55 (359)
53 PF04065 Not3: Not1 N-terminal 61.2 68 0.0015 32.5 9.7 88 229-317 17-107 (233)
54 PF12325 TMF_TATA_bd: TATA ele 59.8 1.3E+02 0.0028 26.9 11.1 79 285-363 10-101 (120)
55 PF11802 CENP-K: Centromere-as 54.6 2.6E+02 0.0057 28.8 15.6 132 865-1009 53-186 (268)
56 PRK01156 chromosome segregatio 53.1 5.9E+02 0.013 32.4 73.0 20 37-56 149-168 (895)
57 COG1196 Smc Chromosome segrega 52.9 6.7E+02 0.014 33.0 82.1 55 906-960 973-1029(1163)
58 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.0 2E+02 0.0043 26.3 10.4 61 969-1029 58-118 (132)
59 COG4477 EzrA Negative regulato 50.5 4.4E+02 0.0094 30.1 48.1 99 300-402 349-448 (570)
60 PF10498 IFT57: Intra-flagella 49.4 3.9E+02 0.0085 29.3 16.1 11 267-277 45-55 (359)
61 COG1340 Uncharacterized archae 48.1 3.5E+02 0.0076 28.4 24.5 28 803-830 53-80 (294)
62 KOG0933|consensus 47.6 6.5E+02 0.014 31.3 65.5 40 633-672 735-774 (1174)
63 PF04849 HAP1_N: HAP1 N-termin 45.0 4.1E+02 0.0088 28.2 26.8 72 766-841 62-133 (306)
64 COG0497 RecN ATPase involved i 44.0 5.8E+02 0.013 29.7 26.6 71 393-463 293-369 (557)
65 PF04065 Not3: Not1 N-terminal 43.7 3.7E+02 0.008 27.4 13.4 80 585-665 25-107 (233)
66 PF13949 ALIX_LYPXL_bnd: ALIX 42.1 4.5E+02 0.0098 27.9 24.8 252 14-277 23-288 (296)
67 PF12325 TMF_TATA_bd: TATA ele 41.4 2.6E+02 0.0057 25.0 11.5 79 179-257 10-101 (120)
68 TIGR00634 recN DNA repair prot 40.7 6.9E+02 0.015 29.6 24.8 69 181-249 297-371 (563)
69 PF05667 DUF812: Protein of un 39.6 7.2E+02 0.016 29.5 31.2 34 504-537 506-539 (594)
70 PF15070 GOLGA2L5: Putative go 39.2 7.4E+02 0.016 29.6 40.0 67 292-358 154-223 (617)
71 PF08317 Spc7: Spc7 kinetochor 38.3 5.5E+02 0.012 27.8 18.7 82 118-200 209-291 (325)
72 PF05557 MAD: Mitotic checkpoi 37.3 2.3E+02 0.0051 34.8 11.3 28 16-43 124-151 (722)
73 PF08429 PLU-1: PLU-1-like pro 37.2 5.8E+02 0.013 27.8 23.4 30 166-196 2-31 (335)
74 PF04849 HAP1_N: HAP1 N-termin 37.1 5.4E+02 0.012 27.3 27.1 29 440-468 273-301 (306)
75 COG1579 Zn-ribbon protein, pos 36.8 4.8E+02 0.01 26.7 19.3 120 228-361 28-148 (239)
76 PF05557 MAD: Mitotic checkpoi 35.7 2.3E+02 0.0051 34.8 10.9 90 286-379 552-646 (722)
77 TIGR02168 SMC_prok_B chromosom 34.5 1.2E+03 0.026 30.6 81.1 20 908-927 998-1017(1179)
78 PF10805 DUF2730: Protein of u 33.9 1.8E+02 0.004 25.3 6.9 62 941-1005 39-100 (106)
79 PF08429 PLU-1: PLU-1-like pro 33.9 6.5E+02 0.014 27.4 21.9 22 610-631 305-326 (335)
80 PF01576 Myosin_tail_1: Myosin 33.9 10 0.00022 47.1 -1.1 24 906-929 717-740 (859)
81 PF04108 APG17: Autophagy prot 33.4 7.5E+02 0.016 27.9 38.6 367 184-619 4-398 (412)
82 TIGR03545 conserved hypothetic 31.8 9.1E+02 0.02 28.5 17.8 105 231-361 164-268 (555)
83 PF11172 DUF2959: Protein of u 31.4 5.1E+02 0.011 25.4 19.7 59 944-1005 140-198 (201)
84 PF00038 Filament: Intermediat 30.9 6.9E+02 0.015 26.8 33.8 44 90-137 51-94 (312)
85 PF00261 Tropomyosin: Tropomyo 29.2 6.4E+02 0.014 25.8 29.3 48 123-176 6-53 (237)
86 KOG0250|consensus 28.9 1.3E+03 0.028 29.3 59.7 100 635-734 730-833 (1074)
87 KOG0977|consensus 28.7 9.9E+02 0.021 27.8 28.4 51 979-1030 337-387 (546)
88 KOG0035|consensus 28.1 1.2E+02 0.0026 37.0 6.3 128 610-737 398-534 (890)
89 PF05531 NPV_P10: Nucleopolyhe 26.9 3.4E+02 0.0074 21.9 8.3 57 302-359 8-64 (75)
90 PF12718 Tropomyosin_1: Tropom 26.3 5.3E+02 0.012 24.0 15.3 90 15-111 16-105 (143)
91 PRK10869 recombination and rep 25.9 1.1E+03 0.025 27.7 23.9 38 181-218 292-329 (553)
92 smart00502 BBC B-Box C-termina 25.3 4.8E+02 0.01 23.1 15.5 50 979-1030 77-126 (127)
93 COG0497 RecN ATPase involved i 24.9 1.2E+03 0.025 27.4 24.8 27 125-151 157-183 (557)
94 KOG0972|consensus 24.6 8E+02 0.017 25.4 12.1 46 52-97 193-241 (384)
95 PF00261 Tropomyosin: Tropomyo 24.5 7.7E+02 0.017 25.2 29.8 30 17-46 5-34 (237)
96 PRK01156 chromosome segregatio 24.5 1.5E+03 0.033 28.7 63.5 17 509-525 521-537 (895)
97 PF02403 Seryl_tRNA_N: Seryl-t 24.3 4.7E+02 0.01 22.7 11.3 77 179-256 23-99 (108)
98 COG1579 Zn-ribbon protein, pos 23.2 8.2E+02 0.018 25.0 18.4 53 683-735 29-82 (239)
99 PRK11637 AmiB activator; Provi 23.1 1.1E+03 0.024 26.6 27.9 55 121-175 43-98 (428)
100 PF07426 Dynactin_p22: Dynacti 22.8 7E+02 0.015 24.1 17.5 124 56-196 7-133 (174)
101 KOG3809|consensus 22.0 1.1E+03 0.024 26.1 12.6 122 874-998 433-567 (583)
102 KOG0995|consensus 21.9 1.3E+03 0.028 26.8 36.2 365 608-1032 205-576 (581)
103 KOG0978|consensus 21.0 1.5E+03 0.033 27.3 57.4 644 82-825 5-673 (698)
104 PF15450 DUF4631: Domain of un 20.8 1.3E+03 0.028 26.5 49.2 54 683-736 219-282 (531)
105 TIGR02169 SMC_prok_A chromosom 20.8 2E+03 0.043 28.6 90.5 50 906-955 982-1033(1164)
106 cd07637 BAR_ACAP3 The Bin/Amph 20.2 8.6E+02 0.019 24.2 20.0 28 89-116 5-32 (200)
No 1
>KOG0517|consensus
Probab=100.00 E-value=2.2e-95 Score=828.54 Aligned_cols=995 Identities=30% Similarity=0.505 Sum_probs=950.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHH
Q psy6936 22 REQVLNRYADFKSEARSKREKL-------EDSRR-FQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFE 92 (1032)
Q Consensus 22 l~~l~~r~~~l~~~~~~r~~~L-------~~~~~-~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~ 92 (1032)
+.+|+.-|..|...=..|.--| +.+-. ..+|..++..-.+||.+....|+++.+ .++..|++.+++|+++.
T Consensus 382 i~DInkAW~~LE~AEheRe~ALr~ELiRQEKLEqLA~RFdrKAamREtwL~enqrlvsqdnfg~~LaaVEAa~KKheAIe 461 (2473)
T KOG0517|consen 382 ISDINKAWERLEKAEHERELALRAELIRQEKLEQLARRFDRKAAMRETWLKENQRLVSQDNFGYDLAAVEAALKKHEAIE 461 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHhhhhh
Confidence 6789999999988776665444 33322 368999999999999999999999887 68999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhh
Q psy6936 93 AEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKE 172 (1032)
Q Consensus 93 ~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e 172 (1032)
.+|-+++.++..|...++.|-..++++...|..+-.++-.+|..|..++..|+.+|+..+.+...++++..+.+||++.+
T Consensus 462 tDI~AyeeRvqal~ava~eL~~E~YHd~~rV~~r~~~V~~~W~~Ll~lL~arR~rL~~~~~Lqklfqem~~~~d~meElk 541 (2473)
T KOG0517|consen 462 TDILAYEERVQALVAVADELEAENYHDIKRVAARKDNVLRLWTYLLELLEARRQRLEQMLALQKLFQEMLYTSDWMEELK 541 (2473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCC-CchHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 173 AFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLE--GHP-ERETIVRRKEELSEAWMRLKQLALM 249 (1032)
Q Consensus 173 ~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~--~~~-~~~~i~~~~~~l~~rw~~l~~~~~~ 249 (1032)
..+.+.++|..+-.|+..+++|.-+..+|..+...|..++..+..+... ..| ++..|..+++.|...|..|...+..
T Consensus 542 ~~l~S~d~GkHL~gVedLLQkH~LlEadIn~~gerv~~~~a~a~~f~~~~~~~~cdp~vi~~R~~~le~~y~eL~~laa~ 621 (2473)
T KOG0517|consen 542 QQLLSRDVGKHLLGVEDLLQKHDLLEADINAQGERVKALNAQALRFDSPKEYKPCDPQVIQERVAHLEQCYQELVELAAA 621 (2473)
T ss_pred HHHHhHHHHHHHhhHHHHHHhhhhHHhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999763 223 5669999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCC
Q psy6936 250 RQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHS 329 (1032)
Q Consensus 250 r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~ 329 (1032)
|...||....+++|..++++...||.+++..+++.+.|.|+..|...+.+|+.|+.++..+.+.+..+...|..|+..++
T Consensus 622 RRarLE~sr~l~~F~~d~~EeEaWlkEkeqi~~sa~~g~DLs~v~~ll~kHKalE~E~~~~~a~~~~~~~~G~~Lvae~~ 701 (2473)
T KOG0517|consen 622 RRARLEESRRLWQFLWDVEEEEAWLKEKEQILSSADTGRDLSSVLRLLQKHKALEDEMRGRDAHLKQMIREGEELVAEGH 701 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhh
Q psy6936 330 DHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEH 409 (1032)
Q Consensus 330 ~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l 409 (1032)
++.+.|..++..+..+|+.|..++..|..+|+++..+++|+.+.+++.+||.+....+++.+++.|-.+++.++++|.++
T Consensus 702 pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~QffaDAdd~~sWl~d~~rlvss~d~G~DE~saq~LlkrH~~l 781 (2473)
T KOG0517|consen 702 PGSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQFFADADDAESWLRDALRLVSSEDVGHDEASAQALLKRHRDL 781 (2473)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccchhcCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy6936 410 KGEIDAREDSFRGTADAGQSLLDRNHYAADDIRE---KLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWM 486 (1032)
Q Consensus 410 ~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~---~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~WL 486 (1032)
..+|..+.+.+..+...+..|.... |..|.|.. ++..+.+.|..|.....-|+..|+.++.+..|+.+|..+..|+
T Consensus 782 ~~El~a~~~~i~~L~eQa~~l~~~~-~e~p~V~~~~~R~~~i~q~Y~El~~lA~lRrq~L~dalaLy~~~se~d~~ElWi 860 (2473)
T KOG0517|consen 782 EEELRAYRGDIDRLEEQASALPQES-PEGPEVRQPLQRQDTISQDYEELQELAQLRRQRLEDALALYGFYSECDACELWI 860 (2473)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcccc-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 9999999999999999999998763 45666666 9999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy6936 487 AKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSA 566 (1032)
Q Consensus 487 ~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~ 566 (1032)
.+.+..|....+|.++++++....+|+.|..+|......|..|+..+++|...+|+.++.|..+.+.||.+|+.|..++.
T Consensus 861 ~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~rW~~l~~l~~ 940 (2473)
T KOG0517|consen 861 KEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQRWQQLRELVD 940 (2473)
T ss_pred HHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhhhhHH----------------------------------------------------------------
Q psy6936 567 RRRAILEDSYKFQQFE---------------------------------------------------------------- 582 (1032)
Q Consensus 567 ~r~~~L~~~~~~~~~~---------------------------------------------------------------- 582 (1032)
+|+..|+.+..++.|.
T Consensus 941 qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~~ 1020 (2473)
T KOG0517|consen 941 QKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEEE 1020 (2473)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998887766553
Q ss_pred -------------HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHH
Q psy6936 583 -------------EIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQ 649 (1032)
Q Consensus 583 -------------~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~ 649 (1032)
+|..-|..|...+.+|...++.+...+.|..++..|..|+..+...+.+...|.+.+.++..|.+|.
T Consensus 1021 ~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~ 1100 (2473)
T KOG0517|consen 1021 HPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQVASEEGPVDLAEAEQLLKQHA 1100 (2473)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hhHHHHHhchhhHHHHHHHHHhHhhc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy6936 650 EHKGEIDAREDSFRGTADAGQSLLDR-NHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWM 728 (1032)
Q Consensus 650 ~l~~el~~~~~~~~~l~~~g~~L~~~-~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~~~f~~~~~~l~~WL 728 (1032)
++..+|+.++..|..+.+.|+.+... ..|....+.++|..|.+-|..|...|..|+..|.+++.++.|.++..++..-+
T Consensus 1101 ~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~ea~l 1180 (2473)
T KOG0517|consen 1101 ALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEELHRMWENRQKWLSQGLDLQLFLRDARQAEATL 1180 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999977753 23445679999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHH
Q psy6936 729 AKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRD 808 (1032)
Q Consensus 729 ~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~ 808 (1032)
...|..|+-..+|++++.++..+++|.+|...+....+++..+ ...|..|++.+|++++.|+++++
T Consensus 1181 ~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~--------------~~~gd~Lv~~~h~~s~~I~ek~~ 1246 (2473)
T KOG0517|consen 1181 SNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKIEAL--------------VDTGDKLVSEGHIDSDKIREKAQ 1246 (2473)
T ss_pred hhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHHHHH--------------HHHHHHHHhcCCccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhhhhccccCCCCcchhHHHHHhhHHHHHHHHhchHhHH
Q psy6936 809 LLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMD 888 (1032)
Q Consensus 809 ~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~l~~~l~~~~~l~~el~~~~~~~~ 888 (1032)
.+..||..+...+.++...|..++.++.|.++|+++..||.++..++.+++|.++..|..++.+|++|++||.++++.++
T Consensus 1247 ~I~~r~~~nr~rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK~l~a~Desy~~~~nl~~k~~kHqAFeaELaank~~l~ 1326 (2473)
T KOG0517|consen 1247 SILARRKANRERAQQRLRKLKDSLELQEFLQDCDELKLWIEEKMLMAQDESYRDARNLHSKWLKHQAFEAELAANKEWLE 1326 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHHhChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHhhhccccCCCC
Q psy6936 889 EITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKD 968 (1032)
Q Consensus 889 ~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~~~~~~~~~~~l~~wL~~~e~~L~~~~~~~~ 968 (1032)
.|...|+.|+...|...+.|..++..|+.+|++|...+.++.++|.+|.....|...+..+.+||.+++.+|.+.|+|.|
T Consensus 1327 ~i~~eG~~L~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~l~~le~qL~S~D~G~D 1406 (2473)
T KOG0517|consen 1327 KIEKEGQELVSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKKLDELESQLQSDDTGKD 1406 (2473)
T ss_pred HHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC
Confidence 99999999999999989999999999999999999999999999999999899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcCCC
Q psy6936 969 LTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQRPI 1032 (1032)
Q Consensus 969 ~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~~l~~~~ 1032 (1032)
+.+++.++++++.++.+|..+..+|..|..++..|...|| +++.|......+.+||..|++|+
T Consensus 1407 L~Svn~llkKqq~lEsem~~~~~kv~el~s~~~~ma~~~~-~a~~I~~~~~~v~~Rf~~L~~Pl 1469 (2473)
T KOG0517|consen 1407 LTSVNDLLKKQQVLESEMEVRAQKVAELQSQAKAMAEEGH-SAENIEETTLAVLERFEDLLGPL 1469 (2473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccCc-chhhHHHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999998888 88999999999999999999985
No 2
>KOG0517|consensus
Probab=100.00 E-value=2.9e-92 Score=803.06 Aligned_cols=971 Identities=30% Similarity=0.502 Sum_probs=920.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHH
Q psy6936 12 LETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQA 90 (1032)
Q Consensus 12 ~~~~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~ 90 (1032)
.+|++.|+.++..+..+|+.|...+..|..+|+++..+.+|..+++++.+||.++...|+++.+ .|-.+.+.++++|..
T Consensus 701 ~pg~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~QffaDAdd~~sWl~d~~rlvss~d~G~DE~saq~LlkrH~~ 780 (2473)
T KOG0517|consen 701 HPGSDQIQERAAEIREQWQRLEALVAGRGRRLQEARELYQFFADADDAESWLRDALRLVSSEDVGHDEASAQALLKRHRD 780 (2473)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhccchhcCCchHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999988899999999999999999999998876 577899999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHh
Q psy6936 91 FEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIR---KRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFW 167 (1032)
Q Consensus 91 l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~---~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~w 167 (1032)
+..+|.++.+.|..|...+..|.... ++.+.|. .++..+...|..|..+..-|...|++++.++.|+..++.+..|
T Consensus 781 l~~El~a~~~~i~~L~eQa~~l~~~~-~e~p~V~~~~~R~~~i~q~Y~El~~lA~lRrq~L~dalaLy~~~se~d~~ElW 859 (2473)
T KOG0517|consen 781 LEEELRAYRGDIDRLEEQASALPQES-PEGPEVRQPLQRQDTISQDYEELQELAQLRRQRLEDALALYGFYSECDACELW 859 (2473)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhcccc-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 99999999999999999999997653 3344444 4999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy6936 168 INDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLA 247 (1032)
Q Consensus 168 l~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~ 247 (1032)
|.+.+..+....+|.++++++....+|+.|..++......+..++..+++|+..+||....|...-+.||.+|+.|....
T Consensus 860 i~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~rW~~l~~l~ 939 (2473)
T KOG0517|consen 860 IKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQRWQQLRELV 939 (2473)
T ss_pred HHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCc-cccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhh
Q psy6936 248 LMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSS-DEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCG 326 (1032)
Q Consensus 248 ~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~-~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~ 326 (1032)
..|...|+.+..+..|..+|.+...||.++...+.+ ..+|.|+..|......+..+++++...+++|..|...|..+..
T Consensus 940 ~qk~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~ 1019 (2473)
T KOG0517|consen 940 DQKKVALESALRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEE 1019 (2473)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999888764 4679999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHH
Q psy6936 327 IHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERH 406 (1032)
Q Consensus 327 ~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~ 406 (1032)
.+|..+..|..++..|..-|+.|...+.+|..+++.+...+.|..+++.|..|+..+...+.+.+.|.|+++++.+|.+|
T Consensus 1020 ~~Paea~~i~~r~~el~~~w~~l~~~~~~~~~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH 1099 (2473)
T KOG0517|consen 1020 EHPAEAQAINARIAELQALWEQLQQRLQEREERLEEAGGLQRFLRDLDDFQAWLESTQTQVASEEGPVDLAEAEQLLKQH 1099 (2473)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhHHHHhhhhHHHHHHhhhhhhhc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy6936 407 QEHKGEIDAREDSFRGTADAGQSLLDR-NHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485 (1032)
Q Consensus 407 ~~l~~~l~~~~~~~~~l~~~~~~L~~~-~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~W 485 (1032)
.++..+|..+...|..+...|..+... ..|....+..++..|...|..|...|..|+..|.+++.++.|..++..+..-
T Consensus 1100 ~~l~eEI~~~~e~y~~~~~~ge~~~~g~~~p~~~~l~erL~~L~~gw~eL~~mWe~Rq~~L~Q~l~lQ~F~Rda~q~ea~ 1179 (2473)
T KOG0517|consen 1100 AALREEIDGYQEDYQRMRALGETVADGQTDPQYLFLRERLQALGTGWEELHRMWENRQKWLSQGLDLQLFLRDARQAEAT 1179 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977763 3477888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy6936 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKS 565 (1032)
Q Consensus 486 L~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~ 565 (1032)
+.+.|.+|...++|.+++.++..+++|++|...+....+++..+...|..|+..+|++++.|..+.+++..||.+...
T Consensus 1180 l~~qE~~L~~d~lp~sle~ae~~LKrh~DF~~tm~a~~~ki~a~~~~gd~Lv~~~h~~s~~I~ek~~~I~~r~~~nr~-- 1257 (2473)
T KOG0517|consen 1180 LSNQEAFLSHDNLPDSLEEAEALLKRHRDFLTTMDANDEKIEALVDTGDKLVSEGHIDSDKIREKAQSILARRKANRE-- 1257 (2473)
T ss_pred HhhHHHHHhcccccccHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999998877666555554
Q ss_pred HHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHhch-hhhccCHHHHHHH
Q psy6936 566 ARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISA-DELAKDVAGAEAL 644 (1032)
Q Consensus 566 ~~r~~~L~~~~~~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~-~~~~~~~~~~~~~ 644 (1032)
...+|..+|.+++.++.|..+|.++..||.+. .+.. .....++.++...
T Consensus 1258 ----------------------------rA~q~~~~L~~slelQ~flqd~~EL~~Wi~EK--~l~a~Desy~~~~nl~~k 1307 (2473)
T KOG0517|consen 1258 ----------------------------RAQQRLRKLKDSLELQEFLQDCDELKLWIEEK--MLMAQDESYRDARNLHSK 1307 (2473)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccccchhhhhHHHHH
Confidence 45556666677777788999999999999975 4444 4567789999999
Q ss_pred HHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q psy6936 645 LERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQA 724 (1032)
Q Consensus 645 l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~~~f~~~~~~l 724 (1032)
+.+|++|..||.++++.++.+...|..|+...|...+.|+.+|..|+.+|+.|.....++..+|.++-....|.+++.++
T Consensus 1308 ~~kHqAFeaELaank~~l~~i~~eG~~L~~ekpe~~~~V~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~ 1387 (2473)
T KOG0517|consen 1308 WLKHQAFEAELAANKEWLEKIEKEGQELVSEKPELKALVEKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADA 1387 (2473)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHH
Q psy6936 725 DTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVA 804 (1032)
Q Consensus 725 ~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~ 804 (1032)
..||..+|..|.+.++|.|+.++..++++|+.++.++.....+|..| ...+..|...+| +++.|.
T Consensus 1388 ~~~l~~le~qL~S~D~G~DL~Svn~llkKqq~lEsem~~~~~kv~el--------------~s~~~~ma~~~~-~a~~I~ 1452 (2473)
T KOG0517|consen 1388 KKKLDELESQLQSDDTGKDLTSVNDLLKKQQVLESEMEVRAQKVAEL--------------QSQAKAMAEEGH-SAENIE 1452 (2473)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHhhhccCc-chhhHH
Confidence 99999999999999999999999999999999999999999999999 999999988887 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhhhhccccCCC-CcchhHHHHHhhHHHHHHHHhc
Q psy6936 805 QRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNAN 883 (1032)
Q Consensus 805 ~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~-~~~~l~~~l~~~~~l~~el~~~ 883 (1032)
.....+..||..|+..+..|+..|+.+..+++|..++++...|+.+..+.+++..+| +...++..+++++.|+.||+.|
T Consensus 1453 ~~~~~v~~Rf~~L~~Pl~~R~~~Le~S~e~hQf~~dvddE~~WV~ErlP~A~s~d~G~~L~~~q~l~KK~q~Lq~EI~~H 1532 (2473)
T KOG0517|consen 1453 ETTLAVLERFEDLLGPLQERRKQLEASKELHQFVRDVDDELLWVAERLPLASSTDYGENLQTVQSLHKKNQTLQAEIKGH 1532 (2473)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhCccCCchhhccChHHHHHHHHHhHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999888887 5778999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHHHhhhccc
Q psy6936 884 KTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSE 963 (1032)
Q Consensus 884 ~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~~~~~~~~~~~l~~wL~~~e~~L~~~ 963 (1032)
+|.++.|...|+.|+..++|+++.|...+.+|.+.|.+|...|..|.+.|..+.+.+||+-+..+++.||.+.+..+.+.
T Consensus 1533 ~prI~~vl~~gq~Li~~~h~~a~~i~~~~~eLe~aW~eL~~a~e~R~~~L~~a~kaQQY~fDaaE~EaWm~Eqel~m~se 1612 (2473)
T KOG0517|consen 1533 QPRINDVLERGQSLIDSGHPEAEAIEEKLQELESAWQELKEACELRRQRLDEAVKAQQYYFDAAEAEAWMGEQELYMMSE 1612 (2473)
T ss_pred chHHHHHHHHhHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcC
Q psy6936 964 DYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030 (1032)
Q Consensus 964 ~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~~l~~ 1030 (1032)
++|.|..++..++++|+.++++|..+...|..|-..|..|++.++|+++.|...-+.|.+-|..|++
T Consensus 1613 e~gkDE~sa~~llkKH~~Le~~v~~Y~~~i~qL~~~~~~lv~~~hP~~eri~~rQ~qldkly~~Lk~ 1679 (2473)
T KOG0517|consen 1613 EYGKDEDSALKLLKKHQALEQEVEDYAQTIEQLAQKAQALVEANHPESERISRRQSQLDKLYAGLKD 1679 (2473)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 3
>KOG0040|consensus
Probab=100.00 E-value=3.1e-82 Score=706.27 Aligned_cols=1009 Identities=61% Similarity=0.960 Sum_probs=970.6
Q ss_pred cchhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCCChhhHHHHH
Q psy6936 6 VKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYKETTNLQAKI 85 (1032)
Q Consensus 6 ~~~~~~~~~~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~~~~~~~l 85 (1032)
-+|++|++++++|+++-+++.+||..+......|+.+|+++..++-|..+++++..|+-++....++..+.||..++..+
T Consensus 3 ~~~~kvletaediqerrq~vl~~y~~fk~~~~~~~~kleds~~~q~fkrdadel~~wi~ekl~~~~~~~y~dptnlq~k~ 82 (2399)
T KOG0040|consen 3 PSGVKVLETAEDIQERRQEVLTRYQSFKERSAERRQKLEDSYRFQYFKRDADELEKWIMEKLQIASDESYRDPTNLQGKI 82 (2399)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHHHHHHhhhhcccCCchhHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHH
Q psy6936 86 QKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVM 165 (1032)
Q Consensus 86 ~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~ 165 (1032)
++|++|.+++..+...|..|...|..+++.++...+.|+.++..|...|+-|...+.++.-.|..++.+.+|...|++++
T Consensus 83 qkhqa~eaevqa~s~~i~~ld~t~~~~~~~~h~a~e~~~~~l~el~~lw~~l~~~~~ekg~kl~~al~~~q~~~~c~~i~ 162 (2399)
T KOG0040|consen 83 QKHQAFEAEVQAHSRAIVELDKTGNEMITMGHFASEEIKARLEELHHLWDLLLEKLLEKGIKLLQALKLVQYLRECEDIL 162 (2399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Q psy6936 166 FWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQ 245 (1032)
Q Consensus 166 ~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~ 245 (1032)
.||.+.+..+.+.++|.|++.++...++|.+|..++.+++..|..++..++.|+..++|+.+.|+.+-+++|..|.+|..
T Consensus 163 ~wi~dke~~~t~~e~g~d~e~~evl~~kf~~f~~~~~~~e~rv~evnq~a~~~~~e~h~e~~~i~~k~~evn~aw~rl~~ 242 (2399)
T KOG0040|consen 163 EWIGDKEAIVTSEELGQDLEHVEVLQKKFEDFQKELAAHEYRVNEVNQYADKLVEEGHPELDLIQKKQDEVNAAWQRLKG 242 (2399)
T ss_pred HHhccchheeeHHHhcccHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHcCCCchHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhh
Q psy6936 246 LALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLC 325 (1032)
Q Consensus 246 ~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~ 325 (1032)
.+-.|+..|-.+.++..|..++++...|+.+.+..|++.++|.|+..++.++.+|+.+++++..++.+|..|...++.|.
T Consensus 243 la~~rq~~l~~a~~~qrf~rd~~et~~wi~ek~~~l~sddygrdl~~~q~l~~~h~g~erdla~l~~kv~~l~~~a~~l~ 322 (2399)
T KOG0040|consen 243 LALQRQEKLFGAAEVQRFNRDVDETIAWIKEKEPVLSSDDYGRDLASVQALQRKHEGLERDLAALEDKVKELCAEAEKLT 322 (2399)
T ss_pred HHHHHHHhhccHHHHHHhcccHHHHHHHHhhccccccccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHH
Q psy6936 326 GIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER 405 (1032)
Q Consensus 326 ~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~ 405 (1032)
.+.|.+++.|+.+-+.+...|..+...+..|...|+.++-++.|...+..+.+|++.+.+.+...+.+.|+..++..|..
T Consensus 323 ~~hp~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~~hrf~ad~rdL~~w~~~~~aaInadel~~dvag~e~lL~~ 402 (2399)
T KOG0040|consen 323 LSHPDDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYWLHRFLADFRDLSSWINEMKAAINADELAKDVAGAEALLDR 402 (2399)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy6936 406 HQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485 (1032)
Q Consensus 406 ~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~W 485 (1032)
|+++..+|+++...+..-...|..++..+++..+.|+.++..+...|..|...|..|....+++..++.|+.+......|
T Consensus 403 hqEhK~eIds~~dSf~~~~~~gq~l~~~~~~as~ev~ekl~~le~e~~~ll~lwe~r~~~yeqcmd~~lfyrdteq~d~w 482 (2399)
T KOG0040|consen 403 HQEHKGEIDAREDSFKSADESGQKLVEAGHYASDEVREKLEILDNEKSALLELWEERRIQYEQCMDLQLFYRDTEQVDTW 482 (2399)
T ss_pred HHHHhhhhHHHHHHHhhhccccHHHHHccccccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q psy6936 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKS 565 (1032)
Q Consensus 486 L~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~ 565 (1032)
+...++.|.+...|.++++++..+++|++|+.-+......+..+...+..|....||+++++..+-..+..|-..+....
T Consensus 483 mskqeafl~nedlg~sl~S~e~l~kkhedfEks~~aQEeki~~~d~~atkli~~~hy~~~dv~~rr~~ll~rr~~l~e~a 562 (2399)
T KOG0040|consen 483 MSKQEAFLANEDLGDSLDSVEALLKKHEDFEKSLAAQEEKIIALDEFATKLIQGQHYAAEDVAARRDALLARRDALREKA 562 (2399)
T ss_pred HHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHHHHHhhHhhhhHH---------------------------------------------------------------
Q psy6936 566 ARRRAILEDSYKFQQFE--------------------------------------------------------------- 582 (1032)
Q Consensus 566 ~~r~~~L~~~~~~~~~~--------------------------------------------------------------- 582 (1032)
..|+.+|..+...+++.
T Consensus 563 ~~r~~~lk~s~~~q~~~rd~de~~~wi~Ek~~~a~dd~y~d~~nlk~kvqk~q~fe~el~An~~r~~~i~~~g~~~i~~~ 642 (2399)
T KOG0040|consen 563 ATRRRLLKESLLLQQFYRDSDELKSWINEKLKTATDESYKDPTNLKGKVQKHQNFEKELAANKSRLEDIQKTGQELIEGG 642 (2399)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 88888887766555433
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 583 -------------------------------------------------------------------------------- 582 (1032)
Q Consensus 583 -------------------------------------------------------------------------------- 582 (1032)
T Consensus 643 h~A~d~v~~r~~ev~~Lw~~l~~aT~~kg~kl~ea~qq~qf~~n~edve~wl~e~e~ql~sed~gkdl~~vqn~~kk~~l 722 (2399)
T KOG0040|consen 643 HYAADNVTTRLSEVASLWEELLEATKKKGTKLREANQQQQFNRNIEDIELWLSEVEGQVASEDYGKDLTSVQNLQKKHGL 722 (2399)
T ss_pred hHHHHHHhHhHHHHHHHHHHHHhhcccccHHHHHHHHhhhhhccHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 583 -------------------------------------------------------------------------------- 582 (1032)
Q Consensus 583 -------------------------------------------------------------------------------- 582 (1032)
T Consensus 723 Le~~v~a~~d~vd~~~~~a~~fee~~h~da~~i~~kqe~L~~r~eal~dp~a~rk~Kl~d~l~~~~l~rd~edE~awi~E 802 (2399)
T KOG0040|consen 723 LESDVAAHQDRVDGITDLAAQFQEIGHFDAKNIRAKQENLVARYEALKEPLATRKQKLLDSLQLQQLFRDTEDEEAWIRE 802 (2399)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhhhhhchHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 583 -------------------------------------------------------------------------------- 582 (1032)
Q Consensus 583 -------------------------------------------------------------------------------- 582 (1032)
T Consensus 803 ~E~~a~st~~gkdlI~~qnl~~k~q~~~~~ia~he~ri~~i~~r~~~m~~~~~f~aedvk~~~~~L~~~~~slk~ka~~r 882 (2399)
T KOG0040|consen 803 KEPIAASTNRGKDLIGVQNLLKKHQALLAEIANHEPRIQEVTSRGNKMVEEGHFAAEDVRSRLKSLNQNWESLKAKASQR 882 (2399)
T ss_pred cchhccchhcchhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 583 -------------------------------------------------------------------------------- 582 (1032)
Q Consensus 583 -------------------------------------------------------------------------------- 582 (1032)
T Consensus 883 ~~dle~s~q~~qy~ad~~eae~w~~ekEpi~~stdygKdedsa~allkkhea~~~dl~af~~~i~~lr~qa~~cq~Q~tp 962 (2399)
T KOG0040|consen 883 RQDLEDSLQAQQYLADANEAESWMREKEPIVGSTDYGKDEDSAEALLKKHEALLSDLEAFGDSIQALREQANACRQQEAP 962 (2399)
T ss_pred ccchhhHHHHHHHHHHHhhHHHHhhccCcccccccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 583 -------------------------------------------------------------------------------- 582 (1032)
Q Consensus 583 -------------------------------------------------------------------------------- 582 (1032)
T Consensus 963 v~~~g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~~~~~~~l~~~~~i~~r 1042 (2399)
T KOG0040|consen 963 VEDVGKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPGSASQPNLRREESIAQR 1042 (2399)
T ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccCCcchHHHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 583 -------------------------------------------------------------------------------- 582 (1032)
Q Consensus 583 -------------------------------------------------------------------------------- 582 (1032)
T Consensus 1043 q~qi~~qyr~lld~~~er~~~l~k~~ke~~l~~ea~dl~~wi~ekE~~~~~vdle~V~~lqkKfddf~~dlkane~rLre 1122 (2399)
T KOG0040|consen 1043 QEQIENQYRSLLDLAEERKRKLEERCKEFLLAREANDLAEWIQEKEAENTEVDLEQVEVLQKKFDDFQKDLKANEVRLRD 1122 (2399)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhhccChHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 583 -------------------------------------------------------------------------------- 582 (1032)
Q Consensus 583 -------------------------------------------------------------------------------- 582 (1032)
T Consensus 1123 ~n~vAd~l~~~g~t~~~~~irqqln~rw~~Lqr~~~E~~q~lgsahevq~fhrd~detk~~i~ek~~al~~~d~g~dl~s 1202 (2399)
T KOG0040|consen 1123 INKVADDLTSEGQTEEAAQIRQQLNARWRSLQRLAEERRQLLGSAHEVQRFHRDADETKEWIEEKCQALNADDPGSDLRS 1202 (2399)
T ss_pred HHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhccccccchHHH
Confidence
Q ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHh
Q psy6936 583 ------------------------------------------------EIVEYWERLTGKAKGRKQKLDESYYLHRFLAD 614 (1032)
Q Consensus 583 ------------------------------------------------~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~ 614 (1032)
+++..|..|......|..+|..++.+++|...
T Consensus 1203 vQalqrkheg~erdla~L~Dkvt~l~e~a~rLtqshp~~aeq~q~qk~elne~w~dl~s~~~~Rkekl~ds~d~~rfLs~ 1282 (2399)
T KOG0040|consen 1203 VQALQRKHEGFERDLAALGDKVTSLGETAERLSQSHPDAAEDLQRKQMELNEAWEDLQGRAKDRKEKLLDSYDLQRFLSD 1282 (2399)
T ss_pred HHHHHHHhccchhchHHHhhHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHHHHHHHHHHH
Q psy6936 615 YRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDK 694 (1032)
Q Consensus 615 ~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~w 694 (1032)
+.++..|+..+-..+.+....++....+..+..|+....++..+.+.|..+...|..++..++.+++.|+.++..++.--
T Consensus 1283 ~rdl~~wi~sm~~lvss~ela~d~tg~eAllerhqe~rte~daRa~tfqA~eqf~~~ll~~~h~As~eie~kl~~~~l~r 1362 (2399)
T KOG0040|consen 1283 YRDLMNWINSIGGLVSSQELANDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGNELLDSGHYASPEIEKKLQAVKLER 1362 (2399)
T ss_pred HHHHHHHHHHhcchhhhHHHhhhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHhhc
Confidence 99999999999988888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHH
Q psy6936 695 THLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774 (1032)
Q Consensus 695 ~~l~~~~~~r~~~Le~~l~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~ 774 (1032)
..+...|..|...|++++..+.|..++.+...|+..-|..+ ..+.+ .++.++.++++|+.|-..+..+...+..+
T Consensus 1363 ~~le~awv~rr~~ldq~lelqLf~~dceq~e~~maare~~l-~dD~~-s~D~veAl~kk~edfdkAi~~qeqkit~l--- 1437 (2399)
T KOG0040|consen 1363 DDLEKAWVKRRKILDQCLELQLFQRDCEQAESWMSAREAFL-ADDKS-SLDSVEALIKKHEDFDKAINAQEEKIAAL--- 1437 (2399)
T ss_pred cchHHHHHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHhh-ccccc-ccchHHHHHHHHHHHHHhhhhhHHHHHHH---
Confidence 99999999999999999999999999999999999999999 55555 88899999999999999999999999988
Q ss_pred hhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhhhh
Q psy6936 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKF 854 (1032)
Q Consensus 775 l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~~~~ 854 (1032)
.-.+..|+...|+....|..+...+.+||..|...+...+.++-....+.+|..++.++.-|+.++++.
T Consensus 1438 -----------~~~a~~lia~~hya~e~i~~~R~~vlDrwr~lk~~Li~krtklg~~qTlqqf~rd~deiE~wi~Ek~~~ 1506 (2399)
T KOG0040|consen 1438 -----------QHFAESLIADNHYAKEEIATRRQQVLDRWRALKAQLIEKRSKLGDSQTLQQFSRDADEIENWISEKLQT 1506 (2399)
T ss_pred -----------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999988888889999999999999999999
Q ss_pred ccccCCCCcchhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 855 ANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEA-NHYASDKIRQRMEQIVHLWESLATATEKKGNKL 933 (1032)
Q Consensus 855 l~~~~~~~~~~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~-~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L 933 (1032)
+++.+|.||..++.+..+|++|..+|.++...+..+...|+.++.. |......++.+++.+...|..+.....++..+|
T Consensus 1507 a~eesykD~tniq~k~qk~qaf~~el~~~sd~i~~vi~~gN~lie~~c~g~e~a~~~~l~~l~d~w~~l~~~t~ek~~kl 1586 (2399)
T KOG0040|consen 1507 ACDESYKDPTNIQSKHQKHQAFEAELHANSDRIHGVINMGNSLIERSCDGNEDAVKARLEQLADQWDHLVEKTTEKSKKL 1586 (2399)
T ss_pred hhhhcccCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999977 233349999999999999999999999999999
Q ss_pred HHHHHHHHHhhchHHHHHhHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhh
Q psy6936 934 QEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADN 1013 (1032)
Q Consensus 934 ~~a~~~~~~~~~~~~l~~wL~~~e~~L~~~~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~ 1013 (1032)
..+...+-|...+..+.-|+.+++..+.+.++|.+++++...+.+|+-++.+|..+...+..++..+.+++.+|..+...
T Consensus 1587 Kea~kq~~f~t~Ikd~~fwl~eve~ll~~ed~~kdLasv~nlLkkhqlle~di~a~ed~~kd~n~qadSll~s~~f~~~~ 1666 (2399)
T KOG0040|consen 1587 KEANKQQRFNTAIKDLEFWLSEVETLLASEDYGKDLASVGNLLKKHQLLEADIVAHEDRLKDLNTQADSLLESGQFDTDQ 1666 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhcccchhh
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy6936 1014 IKAKQAAMCERYENLQR 1030 (1032)
Q Consensus 1014 i~~~~~~l~~r~~~l~~ 1030 (1032)
|......++.||..++.
T Consensus 1667 i~dkr~~i~~r~~~V~~ 1683 (2399)
T KOG0040|consen 1667 IVEKRDNINKRFLNVKE 1683 (2399)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998763
No 4
>KOG0040|consensus
Probab=100.00 E-value=2.7e-62 Score=547.05 Aligned_cols=963 Identities=39% Similarity=0.661 Sum_probs=873.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC-CCChhhHHHHHHhhHHHH
Q psy6936 14 TANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES-YKETTNLQAKIQKHQAFE 92 (1032)
Q Consensus 14 ~~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~-~~~~~~~~~~l~~~~~l~ 92 (1032)
++..|...-..|..||..+.+....|..+|-+++........+..-..|+.+.+....+.. +.++-.++.++.+|+++.
T Consensus 751 da~~i~~kqe~L~~r~eal~dp~a~rk~Kl~d~l~~~~l~rd~edE~awi~E~E~~a~st~~gkdlI~~qnl~~k~q~~~ 830 (2399)
T KOG0040|consen 751 DAKNIRAKQENLVARYEALKEPLATRKQKLLDSLQLQQLFRDTEDEEAWIREKEPIAASTNRGKDLIGVQNLLKKHQALL 830 (2399)
T ss_pred cHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHhhhhhhhhchHHHHHHHhhcchhccchhcchhHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999998887777788888899999988766544 367888999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhh
Q psy6936 93 AEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKE 172 (1032)
Q Consensus 93 ~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e 172 (1032)
++|..+.+.+..+...|.+++..++..++.+..++..|+..|+.+......|...|+..+...+|+.++.+-..|+.+.|
T Consensus 831 ~~ia~he~ri~~i~~r~~~m~~~~~f~aedvk~~~~~L~~~~~slk~ka~~r~~dle~s~q~~qy~ad~~eae~w~~ekE 910 (2399)
T KOG0040|consen 831 AEIANHEPRIQEVTSRGNKMVEEGHFAAEDVRSRLKSLNQNWESLKAKASQRRQDLEDSLQAQQYLADANEAESWMREKE 910 (2399)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHhhHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCC---------------------------------------------------------------------
Q psy6936 173 AFVTADEFGAD--------------------------------------------------------------------- 183 (1032)
Q Consensus 173 ~~l~~~~~~~d--------------------------------------------------------------------- 183 (1032)
..+.+.++|.|
T Consensus 911 pi~~stdygKdedsa~allkkhea~~~dl~af~~~i~~lr~qa~~cq~Q~tpv~~~g~~~v~alyd~q~kSprev~mKkg 990 (2399)
T KOG0040|consen 911 PIVGSTDYGKDEDSAEALLKKHEALLSDLEAFGDSIQALREQANACRQQEAPVEDVGKECVLALYDYQEKSPREVTMKKG 990 (2399)
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHhhh
Confidence 99988888887
Q ss_pred --------------------------------------------------------------------------------
Q psy6936 184 -------------------------------------------------------------------------------- 183 (1032)
Q Consensus 184 -------------------------------------------------------------------------------- 183 (1032)
T Consensus 991 Dvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~~~~~~~l~~~~~i~~rq~qi~~qyr~lld~~~er~~~l~k~~ke 1070 (2399)
T KOG0040|consen 991 DVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPGSASQPNLRREESIAQRQEQIENQYRSLLDLAEERKRKLEERCKE 1070 (2399)
T ss_pred hHHHHHhhcccccccchhhhhcCcchHHHHHHhccCCcchHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CCchHHHHHHHHHH
Q psy6936 184 -------------------------LEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGH-PERETIVRRKEELS 237 (1032)
Q Consensus 184 -------------------------~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~-~~~~~i~~~~~~l~ 237 (1032)
++.|...+.+|.+|..++....+.+..++..|..|...+. +....|+.. ++
T Consensus 1071 ~~l~~ea~dl~~wi~ekE~~~~~vdle~V~~lqkKfddf~~dlkane~rLre~n~vAd~l~~~g~t~~~~~irqq---ln 1147 (2399)
T KOG0040|consen 1071 FLLAREANDLAEWIQEKEAENTEVDLEQVEVLQKKFDDFQKDLKANEVRLRDINKVADDLTSEGQTEEAAQIRQQ---LN 1147 (2399)
T ss_pred HHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHhccccccCHHHHHHHHH---HH
Confidence 3445555556666666666666666666666666654442 223355544 89
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHH
Q psy6936 238 EAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTL 317 (1032)
Q Consensus 238 ~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l 317 (1032)
.+|..|.....+|...|..+..+..|+.+.++...|+.++-..|+..++|.|+.+++....+|..+.+++......|..|
T Consensus 1148 ~rw~~Lqr~~~E~~q~lgsahevq~fhrd~detk~~i~ek~~al~~~d~g~dl~svQalqrkheg~erdla~L~Dkvt~l 1227 (2399)
T KOG0040|consen 1148 ARWRSLQRLAEERRQLLGSAHEVQRFHRDADETKEWIEEKCQALNADDPGSDLRSVQALQRKHEGFERDLAALGDKVTSL 1227 (2399)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHhhccccccchHHHHHHHHHHhccchhchHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHH
Q psy6936 318 GAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVA 397 (1032)
Q Consensus 318 ~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~ 397 (1032)
.+++..|..+.|+.+..++.+--.++..|.+|......|..+|..++.++.|+.++.++..|+..+...+.+.+.+.|+.
T Consensus 1228 ~e~a~rLtqshp~~aeq~q~qk~elne~w~dl~s~~~~Rkekl~ds~d~~rfLs~~rdl~~wi~sm~~lvss~ela~d~t 1307 (2399)
T KOG0040|consen 1228 GETAERLSQSHPDAAEDLQRKQMELNEAWEDLQGRAKDRKEKLLDSYDLQRFLSDYRDLMNWINSIGGLVSSQELANDVT 1307 (2399)
T ss_pred HHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchhhhHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred HHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6936 398 GAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYR 477 (1032)
Q Consensus 398 ~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~ 477 (1032)
.++..+..|+....++....+.+..+.+.|..++..++..+|.++.++..+...-..+...|..|...|.+++.++.|+.
T Consensus 1308 g~eAllerhqe~rte~daRa~tfqA~eqf~~~ll~~~h~As~eie~kl~~~~l~r~~le~awv~rr~~ldq~lelqLf~~ 1387 (2399)
T KOG0040|consen 1308 GAEALLERHQEHRTEIDARAGTFQAFEQFGNELLDSGHYASPEIEKKLQAVKLERDDLEKAWVKRRKILDQCLELQLFQR 1387 (2399)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHH
Q psy6936 478 DTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKR 557 (1032)
Q Consensus 478 ~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r 557 (1032)
+|.....|+...+..+ ..+.+ +.+.++..++.|+.|-..+..+...+..+.-.+..|+..+||.++.|..+...+
T Consensus 1388 dceq~e~~maare~~l-~dD~~-s~D~veAl~kk~edfdkAi~~qeqkit~l~~~a~~lia~~hya~e~i~~~R~~v--- 1462 (2399)
T KOG0040|consen 1388 DCEQAESWMSAREAFL-ADDKS-SLDSVEALIKKHEDFDKAINAQEEKIAALQHFAESLIADNHYAKEEIATRRQQV--- 1462 (2399)
T ss_pred hhHHHHHHHHHHHHhh-ccccc-ccchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---
Confidence 9999999999999999 44444 778899999999999999999999999999999999999999988887765544
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHhchhhhccC
Q psy6936 558 RAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKD 637 (1032)
Q Consensus 558 ~~~l~~~~~~r~~~L~~~~~~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~ 637 (1032)
..+|..+...+...+.++......++|..++.++..|+.+....- ......|
T Consensus 1463 ---------------------------lDrwr~lk~~Li~krtklg~~qTlqqf~rd~deiE~wi~Ek~~~a-~eesykD 1514 (2399)
T KOG0040|consen 1463 ---------------------------LDRWRALKAQLIEKRSKLGDSQTLQQFSRDADEIENWISEKLQTA-CDESYKD 1514 (2399)
T ss_pred ---------------------------HHHHHHHHHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHh-hhhcccC
Confidence 445666666666677778888888999999999999999865432 3456789
Q ss_pred HHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 638 VAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA-ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQL 716 (1032)
Q Consensus 638 ~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~-~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~~~ 716 (1032)
|.++...-++|+.|..+|..+...+..+...|.+++...... ...++.+++.+...|+.+.........+|..+...+.
T Consensus 1515 ~tniq~k~qk~qaf~~el~~~sd~i~~vi~~gN~lie~~c~g~e~a~~~~l~~l~d~w~~l~~~t~ek~~klKea~kq~~ 1594 (2399)
T KOG0040|consen 1515 PTNIQSKHQKHQAFEAELHANSDRIHGVINMGNSLIERSCDGNEDAVKARLEQLADQWDHLVEKTTEKSKKLKEANKQQR 1594 (2399)
T ss_pred cHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999873222 3579999999999999999999999999998888899
Q ss_pred HhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcC
Q psy6936 717 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQ 796 (1032)
Q Consensus 717 f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~ 796 (1032)
|...++++.-|+..+|..|++.+.|.+++++..++.+|+-+..++.++...+..+ +..+..|+..+
T Consensus 1595 f~t~Ikd~~fwl~eve~ll~~ed~~kdLasv~nlLkkhqlle~di~a~ed~~kd~--------------n~qadSll~s~ 1660 (2399)
T KOG0040|consen 1595 FNTAIKDLEFWLSEVETLLASEDYGKDLASVGNLLKKHQLLEADIVAHEDRLKDL--------------NTQADSLLESG 1660 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------------hHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998 99999999998
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhhhhccccCCC-CcchhHHHHHhhHH
Q psy6936 797 HYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQN 875 (1032)
Q Consensus 797 ~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~-~~~~l~~~l~~~~~ 875 (1032)
..+...+.++...++.||..|+..+..|+..|..+..+++|+++..+..+||.++...+.++.++ +...++....+|+.
T Consensus 1661 ~f~~~~i~dkr~~i~~r~~~V~~laa~~r~kl~ea~~L~qff~d~~Deeswikek~l~V~sedygrdl~gVqnl~kkhkr 1740 (2399)
T KOG0040|consen 1661 QFDTDQIVEKRDNINKRFLNVKELAAARRAKLNEALALHQFFRDIDDEESWIKEKKLLVSSDDYGRDLTGVQNLRKKHKR 1740 (2399)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccchhhcccchhhHHHHHHhch
Confidence 88999999999999999999999999999999999999999999999999999988888877776 77888888899999
Q ss_pred HHHHHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHH
Q psy6936 876 FEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSE 955 (1032)
Q Consensus 876 l~~el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~~~~~~~~~~~l~~wL~~ 955 (1032)
+..++..|+|.+..|...|+.+.......-..|+.++..+...|..|......|..+|...+..++|...+.+...|++.
T Consensus 1741 le~el~~hepaiQ~v~~~~ekl~d~a~vg~~ei~~rl~~~~~~w~~lk~la~~r~~~l~es~~~Q~f~~~~eeeEaWine 1820 (2399)
T KOG0040|consen 1741 LEAELAAHEPAIQNVLDMGEKLKDKAAVGVEEIQQRLAQFVEHWEELKELAAARGQKLEESLEYQQFLANVEEEEAWINE 1820 (2399)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999554444478999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHH
Q psy6936 956 IEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYE 1026 (1032)
Q Consensus 956 ~e~~L~~~~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~ 1026 (1032)
.-.-+...++|..++.+..++.+|.+|+.+...|+.+|..+...|..++..+.-..+.|..++..++-+--
T Consensus 1821 k~~l~~~~d~gd~laaiq~Ll~kh~a~e~d~~~hK~rV~~~~~~g~dll~~~~h~~~~I~sk~~~l~~k~~ 1891 (2399)
T KOG0040|consen 1821 KQQLLVSEDYGDTLAAVQGLLKKHEAFETDFTVHKDRVQDVCAQGEDLINKVNHHEEQISSKCEQLNEKLP 1891 (2399)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhchHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 87777778999999999999999999999999999999999999999998876666778888888776543
No 5
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.79 E-value=4.4e-17 Score=167.50 Aligned_cols=210 Identities=38% Similarity=0.677 Sum_probs=193.4
Q ss_pred HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q psy6936 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRK 233 (1032)
Q Consensus 154 ~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~ 233 (1032)
+..|...+..+..||.+++..+....++.|+..++.++++|+.|..++..+.+.++.++..|..|+..+++....|...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 35799999999999999999999876667999999999999999999999999999999999999998877888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHH
Q psy6936 234 EELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDK 313 (1032)
Q Consensus 234 ~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~ 313 (1032)
+.|+.+|+.|...+..|...|+.+.....|+..+..+..||..++..+...+++.++..+..++..|+.|..++..+++.
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPR 161 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHH
Confidence 99999999999999999999999987777777777799999999999876655558999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 314 VSTLGAEADRLCGIHSDHG-DQIQAKRAEIVEYWERLTGKAKGRKQKLDES 363 (1032)
Q Consensus 314 l~~l~~~~~~L~~~~~~~~-~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 363 (1032)
+..+...|..|...+++.. ..+...++.|..+|..|...+..|...|+..
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 162 LKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998886554 8899999999999999999999999988753
No 6
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.79 E-value=6.4e-17 Score=166.27 Aligned_cols=210 Identities=37% Similarity=0.621 Sum_probs=194.1
Q ss_pred HHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHH
Q psy6936 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKR 339 (1032)
Q Consensus 260 ~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 339 (1032)
+..|..++..+..||..++..|....++.|+..++.++.+|+.|..++..+.+.++.++..|..|...++++...|...+
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 46799999999999999999998776666999999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhh
Q psy6936 340 AEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDS 419 (1032)
Q Consensus 340 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~ 419 (1032)
+.|+.+|..|...+..|...|+.++....|+..+..+..||...+..+...+++.++..++.++..|+.|..++..+.+.
T Consensus 82 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (213)
T cd00176 82 EELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPR 161 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHH
Confidence 99999999999999999999999998666666666799999999999987765558999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 420 FRGTADAGQSLLDRNHYAA-DDIREKLRNLENDKTHLLTLWEERRILYEQC 469 (1032)
Q Consensus 420 ~~~l~~~~~~L~~~~~~~~-~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~ 469 (1032)
+..+...|..|+...++.. ..+...+..|..+|..|...+..+...|+.+
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 162 LKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887665 8899999999999999999999999988754
No 7
>KOG4286|consensus
Probab=99.59 E-value=2.9e-13 Score=146.38 Aligned_cols=291 Identities=20% Similarity=0.231 Sum_probs=222.8
Q ss_pred HHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhh
Q psy6936 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIE 794 (1032)
Q Consensus 715 ~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~ 794 (1032)
+.|..++..+..|+-.... .....-.|.....+.....+.++.++..+ ++ ...+..|+.
T Consensus 4 q~~~~~l~~f~~w~l~d~~--~~~~~l~dt~~~~~~~~~~~~~~~e~~a~-----~v--------------~~~~~kl~~ 62 (966)
T KOG4286|consen 4 QQFPLDLEKFLAWLLQDAT--RKERLLEDSKGVKELMKQWQDLQGEIEAH-----NL--------------DENSQKILR 62 (966)
T ss_pred hhhhhhHHHHHHHHHhhhh--hhHhhhhcccccHHHHHHHhccccccccc-----cC--------------chHHHHHHH
Confidence 5788889999999932110 01111112223344444455555555441 12 334444444
Q ss_pred c--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHhhhhhHHHHHHHhhhhhcccc--CCCCcchhHHH
Q psy6936 795 G--QHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY-KFQQFERDCDETKSWVTEKLKFANDD--NYLDPTNLNGK 869 (1032)
Q Consensus 795 ~--~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~-~~~~f~~~~~~l~~Wl~~~~~~l~~~--~~~~~~~l~~~ 869 (1032)
+ +..++-.+. -++.||..|..++.+.+.+|+++. +|..+...+.++++|+.-+...+... ..||...++.+
T Consensus 63 ~l~~~~~~~~l~----~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q 138 (966)
T KOG4286|consen 63 SLEGSDDAVLLQ----LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQ 138 (966)
T ss_pred HhcCCccchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHH
Confidence 2 222222332 389999999999999999999975 67779999999999999887766542 34688899999
Q ss_pred HHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCC--------------CC------chHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 870 VQKHQNFEQELNANKTRMDEITSTGQELLEANH--------------YA------SDKIRQRMEQIVHLWESLATATEKK 929 (1032)
Q Consensus 870 l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~--------------~~------~~~i~~~l~~l~~~w~~l~~~~~~~ 929 (1032)
-.-|++|++||+++++.+-++.+.++.++...+ |. +..+...-+.++..|..|...+.++
T Consensus 139 ~~~~~a~~re~k~k~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w 218 (966)
T KOG4286|consen 139 NDVHRAFKRELKTKEPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADW 218 (966)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhH
Confidence 999999999999999999999999999987542 11 1355666788999999999999999
Q ss_pred HHHHHHHH-HHHHHhhchHHHHHhHHHHHhhhccccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy6936 930 GNKLQEAS-QQQGFNRTIEDIELWLSEIEGQLMSEDYGKD--LTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLER 1006 (1032)
Q Consensus 930 ~~~L~~a~-~~~~~~~~~~~l~~wL~~~e~~L~~~~~~~~--~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~ 1006 (1032)
.+.++.++ +...+...++++..-|.++|....+..+-+| +++++..+++.+.|..+|...+..|+.+++.|..|...
T Consensus 219 ~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~ 298 (966)
T KOG4286|consen 219 QRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTL 298 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhc
Confidence 99999999 5789999999999999999988888766444 68899999999999999999999999999999999876
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcC
Q psy6936 1007 GHFDADNIKAKQAAMCERYENLQR 1030 (1032)
Q Consensus 1007 ~~~~~~~i~~~~~~l~~r~~~l~~ 1030 (1032)
.---.......++.||.||+-|+-
T Consensus 299 d~~ls~~~~~~le~~n~rwk~Lq~ 322 (966)
T KOG4286|consen 299 DIQLSPYNLSTLEDLNTRWKLLQV 322 (966)
T ss_pred ccCCChhhHhhHHHHHHHHHHHHH
Confidence 554457889999999999998864
No 8
>KOG4286|consensus
Probab=99.54 E-value=3e-12 Score=138.65 Aligned_cols=305 Identities=16% Similarity=0.240 Sum_probs=236.5
Q ss_pred HHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC--CCchHHHHH
Q psy6936 155 VQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGH--PERETIVRR 232 (1032)
Q Consensus 155 ~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~--~~~~~i~~~ 232 (1032)
..|...+..|..|+-..... ....-.|---.+...+.++.+..++++. ++-..+..|+.... .+...+.
T Consensus 4 q~~~~~l~~f~~w~l~d~~~--~~~~l~dt~~~~~~~~~~~~~~~e~~a~-----~v~~~~~kl~~~l~~~~~~~~l~-- 74 (966)
T KOG4286|consen 4 QQFPLDLEKFLAWLLQDATR--KERLLEDSKGVKELMKQWQDLQGEIEAH-----NLDENSQKILRSLEGSDDAVLLQ-- 74 (966)
T ss_pred hhhhhhHHHHHHHHHhhhhh--hHhhhhcccccHHHHHHHhccccccccc-----cCchHHHHHHHHhcCCccchHHH--
Confidence 45778889999998322111 1110111122344556666777777662 33344455554322 2222332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhHHHHHHHHHHHhhhcCc-cccCCCHHHHHHHHHHhhhHHHHHHHh
Q psy6936 233 KEELSEAWMRLKQLALMRQEKLFGA-HEIQRFNRDADETVAWIAEKDAVLSS-DEYGRDLASVQTLQRKHEGVERDLAAL 310 (1032)
Q Consensus 233 ~~~l~~rw~~l~~~~~~r~~~Le~~-~~~~~f~~~~~~~~~Wl~~~e~~l~~-~~~~~d~~~~~~~l~~~~~l~~ei~~~ 310 (1032)
-++.+|+.|.+........||.. -+|..+..-+.++..|+.-+...+.. .++|+|...++.+-.-|+.|++||.+.
T Consensus 75 --~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k 152 (966)
T KOG4286|consen 75 --LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK 152 (966)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence 28999999999999999999999 57888999999999999999877764 588999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCC----------C----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy6936 311 EDKVSTLGAEADRLCGIHSD----------H----------GDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY-LHRF 369 (1032)
Q Consensus 311 ~~~l~~l~~~~~~L~~~~~~----------~----------~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~-~~~f 369 (1032)
.+.+-+..+.|..++...|- + +..+..+.+.++..|+.|...+..+...++.++. ++..
T Consensus 153 ~~~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~el 232 (966)
T KOG4286|consen 153 EPVIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQEL 232 (966)
T ss_pred ccHHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999987765331 1 1235566788999999999999999999999997 7889
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCC--HHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHH
Q psy6936 370 LADYRDLISWVSDMKAIISADELAKD--VAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRN 447 (1032)
Q Consensus 370 ~~~~~~l~~Wl~~~e~~l~~~~~~~d--~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~ 447 (1032)
...++++..-|.+.|.....-.+.+| .++++..+++.+.|.++|...+..|+.+++.+..|....--........++.
T Consensus 233 q~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~vndla~ql~~~d~~ls~~~~~~le~ 312 (966)
T KOG4286|consen 233 QEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSHVNDLARQLTTLDIQLSPYNLSTLED 312 (966)
T ss_pred HHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhhHHHHHHHhhhcccCCChhhHhhHHH
Confidence 99999999999998876655443334 4789999999999999999999999999999999986543345667789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 448 LENDKTHLLTLWEERRILYEQCM 470 (1032)
Q Consensus 448 l~~~w~~l~~~~~~r~~~L~~~~ 470 (1032)
++.||.-|...+..|...|.++-
T Consensus 313 ~n~rwk~Lq~SV~~rl~qlrna~ 335 (966)
T KOG4286|consen 313 LNTRWKLLQVSVPDRLTQLRNAH 335 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998775
No 9
>smart00150 SPEC Spectrin repeats.
Probab=99.14 E-value=5.4e-10 Score=98.72 Aligned_cols=99 Identities=40% Similarity=0.671 Sum_probs=94.4
Q ss_pred HHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH
Q psy6936 262 RFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAE 341 (1032)
Q Consensus 262 ~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~ 341 (1032)
.|..++..+..||.+++..+...++|.|+..++.++++|+.|+.++..+++.|..+...|..|+..+|+++..|..++..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 58999999999999999888877888999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy6936 342 IVEYWERLTGKAKGRKQKL 360 (1032)
Q Consensus 342 l~~~w~~l~~~~~~r~~~L 360 (1032)
|+.+|..|...+..|...|
T Consensus 82 l~~~w~~l~~~~~~r~~~L 100 (101)
T smart00150 82 LNERWEELKELAEERRQKL 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876
No 10
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.13 E-value=1.1e-09 Score=97.71 Aligned_cols=104 Identities=32% Similarity=0.597 Sum_probs=98.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHH
Q psy6936 259 EIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAK 338 (1032)
Q Consensus 259 ~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 338 (1032)
.+.+|...++.+..||..++..+...+++.++..+..++.+|+.|..+|..+++.++.|...|..|...+|+++..|..+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 81 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEK 81 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 46789999999999999999999776779999999999999999999999999999999999999988888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 339 RAEIVEYWERLTGKAKGRKQKLDE 362 (1032)
Q Consensus 339 ~~~l~~~w~~l~~~~~~r~~~L~~ 362 (1032)
+..|+.+|..|...+..|...|++
T Consensus 82 ~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 82 LEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999998864
No 11
>smart00150 SPEC Spectrin repeats.
Probab=99.12 E-value=9.3e-10 Score=97.22 Aligned_cols=100 Identities=42% Similarity=0.759 Sum_probs=94.9
Q ss_pred HHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q psy6936 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEE 235 (1032)
Q Consensus 156 ~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~ 235 (1032)
.|...+..+..||.+++..+...++|.|+..++.++++|+.|..++..+++.++.+...|..|+..++++.+.|...+..
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~ 81 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLASEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEE 81 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 58899999999999999988888889999999999999999999999999999999999999999888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6936 236 LSEAWMRLKQLALMRQEKLF 255 (1032)
Q Consensus 236 l~~rw~~l~~~~~~r~~~Le 255 (1032)
|+.+|+.|...+.+|...|+
T Consensus 82 l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 82 LNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999998874
No 12
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.09 E-value=2.2e-09 Score=95.59 Aligned_cols=103 Identities=32% Similarity=0.538 Sum_probs=97.2
Q ss_pred HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q psy6936 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRK 233 (1032)
Q Consensus 154 ~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~ 233 (1032)
+.+|...++.+..||..++..+...++|.++..++.++.+++.|..+|..+.+.++.++..|..|...++++.+.|...+
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 82 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKL 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 46799999999999999999997777799999999999999999999999999999999999999887778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy6936 234 EELSEAWMRLKQLALMRQEKLFG 256 (1032)
Q Consensus 234 ~~l~~rw~~l~~~~~~r~~~Le~ 256 (1032)
..|+.+|+.|...+..|...|++
T Consensus 83 ~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 83 EELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999974
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=0.0029 Score=82.15 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=24.2
Q ss_pred ccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHH
Q psy6936 635 AKDVAGAEALLERHQEHKGEIDAREDSFRGTADAG 669 (1032)
Q Consensus 635 ~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g 669 (1032)
|.....+...+...+.....+....|.++.+....
T Consensus 708 p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~ 742 (1311)
T TIGR00606 708 PDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742 (1311)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44566667777777777777777777777766554
No 14
>KOG4240|consensus
Probab=98.76 E-value=1.6e-05 Score=92.96 Aligned_cols=333 Identities=12% Similarity=0.105 Sum_probs=228.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhhcCC-cCCCCHHHHHHHHHhHHH
Q psy6936 678 YAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNE-DLGDSLDSVEALIKKHED 756 (1032)
Q Consensus 678 ~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~~~f~~~~~~l~~WL~~~e~~L~~~-~~~~~~~~~~~~l~~~~~ 756 (1032)
+....|+..+..+..+-..+....+.+..++..+.+........+++..|+.+....|... -.++++.....+...|..
T Consensus 241 ~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~ 320 (1025)
T KOG4240|consen 241 DMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQLAKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQ 320 (1025)
T ss_pred HHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhh
Confidence 3456799999999999999988889999999999998899999999999999999888877 467778888888888988
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6936 757 FEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQ 836 (1032)
Q Consensus 757 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~ 836 (1032)
|+...+...-... + .....+..++...+++......++..+..+|..+...+..|.+.+..+. .
T Consensus 321 f~d~~e~k~~~~q-~------------~~~~~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~---~ 384 (1025)
T KOG4240|consen 321 FQDAQEVKTLLSQ-L------------QVQQKAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAV---A 384 (1025)
T ss_pred hhhHHHHHHHHHH-H------------HHHHHHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH---H
Confidence 8876665222211 1 0145666677778889999999999999999999999999988887654 6
Q ss_pred HhhhhhHHHHHHHhhhhhccccCCCCcchhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCC------------C
Q psy6936 837 FERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHY------------A 904 (1032)
Q Consensus 837 f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~------------~ 904 (1032)
|+.+...+..-|.+-...-.. +.+-.........-|-... +..+...++.+...+......++- .
T Consensus 385 ~~~t~e~v~~iLe~le~e~E~-~~g~al~~~~f~~l~a~~l--~skh~~~~~~~l~~CTe~r~~ad~~~~ei~r~~i~~~ 461 (1025)
T KOG4240|consen 385 FYKTSEQVEPILEDLESEYER-SGGCALLGAQFRSLHAALL--ISKHRLAKELFLKACTEARRNADVFLREIKRNRILDR 461 (1025)
T ss_pred HhcCHHHHHHHHHhcccccch-hhhhhhchhHHHHHhhhhh--hhhhhhhhhhhhhhHHHHHhcCcHHHHHHHHHhhhhH
Confidence 888887776666653221111 0000000000000011000 122223333333333332222211 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHH-HHhhhccccCCCChHHHHHHHHHHHHHH
Q psy6936 905 SDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSE-IEGQLMSEDYGKDLTSVQNLQKKHALLE 983 (1032)
Q Consensus 905 ~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~~~~~~~~~~~l~~wL~~-~e~~L~~~~~~~~~~~~~~~l~~~~~l~ 983 (1032)
+..|+-....+..+=.-....+....+.+..+.....|....+++..||.. .+.+++.... ....+.....+.+..|.
T Consensus 462 ~k~lk~~r~~~r~re~~~l~~~l~a~q~~d~cq~~~~~e~~~ke~e~~L~~~~ef~~~~~~s-~~~~e~~e~~~~~~~~~ 540 (1025)
T KOG4240|consen 462 EKQLKLHRNLLRQRENCDLESWLLAKQALDKCQSYVVAEASAKEAEEFLHTEGEFKLKELTS-KSERESIELLDLFAKFK 540 (1025)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHhhhHhhhHHHHHHHHHHHHHHHHHhCcchhhhhcch-hhhhhhccchhhhhhcC
Confidence 134444444455444445555666677777777777888999999999988 4445544332 33334445567777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcC
Q psy6936 984 ADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030 (1032)
Q Consensus 984 ~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~~l~~ 1030 (1032)
.........+..+.+..+.|...++..+..|+..+..+...|..++-
T Consensus 541 ~~~~~~~~~~~~f~~~~~~f~~~~~~h~~~Iq~~v~~~e~~~~~~~~ 587 (1025)
T KOG4240|consen 541 SPFKQTKTMVSLFIQLQDNFTELAHRHGREIQKCVERVEKEYRSFSR 587 (1025)
T ss_pred CcchhHHHHHHHHHHHhhhhhhhhhhhhhhHHhhcccchhccCCCCc
Confidence 88899999999999999999999999999999999999998887654
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.36 E-value=0.028 Score=72.07 Aligned_cols=268 Identities=13% Similarity=0.133 Sum_probs=157.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHH
Q psy6936 678 YAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHED 756 (1032)
Q Consensus 678 ~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~-~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~ 756 (1032)
...+.|+..+..+......+...+...+..+.++... ..+...+.....=+.+.+..|...+++.+...-...-..-..
T Consensus 985 ~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~ 1064 (1486)
T PRK04863 985 DLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDE 1064 (1486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHH
Confidence 3456799999999999999999998888888887765 677777778888888888888888776665444433333377
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy6936 757 FEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQ 836 (1032)
Q Consensus 757 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~ 836 (1032)
+...+..+..+-..|..-+......++.+......+-. +...+...+..+..+|..|...+... -++.-+.-..
T Consensus 1065 l~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~~----e~~~~re~I~~aK~~W~~v~~~~~~~--~~~~~l~~~~ 1138 (1486)
T PRK04863 1065 LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLER----DYHEMREQVVNAKAGWCAVLRLVKDN--GVERRLHRRE 1138 (1486)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHhh
Confidence 78888888777777755444444444444444443322 34567889999999999998876542 2222111111
Q ss_pred -HhhhhhHHHHHHHhhhhhccc-----c-------CCCCcchhHHHHHhhHHHHHHHHhchHhHHHHHHHH-HHHHHhCC
Q psy6936 837 -FERDCDETKSWVTEKLKFAND-----D-------NYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTG-QELLEANH 902 (1032)
Q Consensus 837 -f~~~~~~l~~Wl~~~~~~l~~-----~-------~~~~~~~l~~~l~~~~~l~~el~~~~~~~~~v~~~g-~~l~~~~~ 902 (1032)
-+-+.+++-+-..-....+.. + ...|+...+.++.-+ -..+..+.... +.+|...
T Consensus 1139 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~e~~~~~~----------~~~~~~~r~r~r~di~~~~- 1207 (1486)
T PRK04863 1139 LAYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKVQFY----------IAVYQHLRERIRQDIIRTD- 1207 (1486)
T ss_pred hhccCchhhHHHHHHHHHHHHHhccCcHHHHHHHhhccCCCchhHHHhHH----------HHHHHHHHHHHhhhhhhcC-
Confidence 111112221111111111000 0 001111111111111 11122222222 2344333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhchHHHHHhHHHHHhhhccccCC
Q psy6936 903 YASDKIRQRMEQIVHLWESLATATEKKGNKLQEAS-Q-QQGFNRTIEDIELWLSEIEGQLMSEDYG 966 (1032)
Q Consensus 903 ~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~-~-~~~~~~~~~~l~~wL~~~e~~L~~~~~~ 966 (1032)
.+...+..|......+...+.++.++|-... . ...+...+.....|+..+...|...+.|
T Consensus 1208 ----~p~et~e~Le~ei~rl~~~L~e~Er~L~~s~eEVa~~l~~rI~~a~~~V~~mN~~L~~i~f~ 1269 (1486)
T PRK04863 1208 ----DPVEAIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQNISFG 1269 (1486)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344555666666666677777777666444 3 3688899999999999999999886653
No 16
>KOG4240|consensus
Probab=98.31 E-value=0.00033 Score=82.32 Aligned_cols=144 Identities=17% Similarity=0.229 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhhcc-CCCCCCHHHHHHHHHHHHH
Q psy6936 436 YAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSN-EDLGDSLDSVEALIKKHED 514 (1032)
Q Consensus 436 ~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~WL~~~e~~l~~-~~~~~~~~~~~~~l~~~~~ 514 (1032)
+....|+..+..+..+-..+..-...+..++..+..+..+..+.+.+..|+.+....|.. ..++++.........+|..
T Consensus 241 ~mve~vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~ 320 (1025)
T KOG4240|consen 241 DMVEAVQGLLESLEEEVQRLELPADVRSTRLEQASQLAKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQ 320 (1025)
T ss_pred HHHHHHHHHHHhHHHHHHhhcchhhchhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhh
Confidence 456778888888888888888888889999999999999999999999999998888874 4566777777778888888
Q ss_pred HHHHHHH-hHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q psy6936 515 FEKSLAA-QEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQ 579 (1032)
Q Consensus 515 l~~el~~-~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~~~~ 579 (1032)
|.+.... ....-......+..+..+.+++...+...+..++.+|..++..++.|.+.+..+..|.
T Consensus 321 f~d~~e~k~~~~q~~~~~~a~~~~~~~h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~~~~ 386 (1025)
T KOG4240|consen 321 FQDAQEVKTLLSQLQVQQKAFDLLQNKHQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAVAFY 386 (1025)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8776555 2222233455666677788899999999999999999999999999988888877654
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=0.042 Score=71.59 Aligned_cols=31 Identities=10% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q psy6936 975 LQKKHALLEADVASH-LDRIESVKAATEQFLE 1005 (1032)
Q Consensus 975 ~l~~~~~l~~ei~~~-~~~v~~l~~~~~~l~~ 1005 (1032)
+-+.+++|..-|-.+ ...++.+|.....|=.
T Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~ 1151 (1311)
T TIGR00606 1120 LDIYYKTLDQAIMKFHSMKMEEINKIIRDLWR 1151 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555544 5777777777776644
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.27 E-value=0.045 Score=70.45 Aligned_cols=127 Identities=14% Similarity=0.216 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHH--HHHHHHhHHHHHHHHHHHHHHhchhhh-ccCHHHHHHHHHHHHhhHHHHHhch
Q psy6936 583 EIVEYWERLTGKAKGRKQKLDESYY--LHRFLADYRDLISWVSDMKAIISADEL-AKDVAGAEALLERHQEHKGEIDARE 659 (1032)
Q Consensus 583 ~l~~~w~~l~~~~~~r~~~L~~~~~--~~~f~~~~~~l~~Wl~~~e~~l~~~~~-~~~~~~~~~~l~~~~~l~~el~~~~ 659 (1032)
+....|..+.+........+..... -..|.....++..|... .|.+..+ +.....++.++..++.-...+..++
T Consensus 718 e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~---eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 718 ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQ---ELAGKGVDPERIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5577888888888888888887775 35888999999999885 3443222 2344556666666666666677777
Q ss_pred hhHHHHHHHHHhHhhcCC---CCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 660 DSFRGTADAGQSLLDRNH---YAA-------DDIREKLRNLENDKTHLLTLWEERRILYEQCM 712 (1032)
Q Consensus 660 ~~~~~l~~~g~~L~~~~~---~~~-------~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l 712 (1032)
+.|.....--+......+ ... ..+...+..+..........+..+...++..+
T Consensus 795 ~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~ 857 (1201)
T PF12128_consen 795 AEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEEL 857 (1201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666665444433211 112 23555555555555555555666666665544
No 19
>KOG0161|consensus
Probab=98.26 E-value=0.048 Score=70.36 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHhhhhhHHHHHHHhhhhhccccCCCCcchhHHHH-HhhHHHHH
Q psy6936 801 DDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF-QQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKV-QKHQNFEQ 878 (1032)
Q Consensus 801 ~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~-~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~l~~~l-~~~~~l~~ 878 (1032)
..+.+.+.....|+..+..-+.+.+..++.+... ...-..+.++.+-++....... .......++ .++..++.
T Consensus 1656 ~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s-----~l~~~KrklE~~i~~l~~ 1730 (1930)
T KOG0161|consen 1656 EELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNS-----SLTAEKRKLEAEIAQLQS 1730 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc-----chhhHHHHHHHHHHHHHH
Confidence 4577777888888888888888888888876433 3355556666655554321110 111122222 12344555
Q ss_pred HHHhchHhHHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhchHHHHHhH
Q psy6936 879 ELNANKTRMDEITSTGQELLEANHYAS---DKIRQRMEQIVHLWESLATATEKKGNKLQEASQ--QQGFNRTIEDIELWL 953 (1032)
Q Consensus 879 el~~~~~~~~~v~~~g~~l~~~~~~~~---~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~--~~~~~~~~~~l~~wL 953 (1032)
++..-..........|++.+..+.... ..=++....+..-=..|.....+...+|..+-. ...+...+..+..-+
T Consensus 1731 elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Leari 1810 (1930)
T KOG0161|consen 1731 ELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARI 1810 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 555554455555555555443321111 111111222222223333334444444544442 134445555666666
Q ss_pred HHHHhhhcc
Q psy6936 954 SEIEGQLMS 962 (1032)
Q Consensus 954 ~~~e~~L~~ 962 (1032)
..+|..|..
T Consensus 1811 r~LE~~l~~ 1819 (1930)
T KOG0161|consen 1811 RELESELEG 1819 (1930)
T ss_pred HHHHHHHhH
Confidence 666665543
No 20
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.25 E-value=0.049 Score=70.11 Aligned_cols=141 Identities=19% Similarity=0.203 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHH
Q psy6936 682 DIREKLRNLENDKTHLLTLWEERRILYEQCMDL--QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEK 759 (1032)
Q Consensus 682 ~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~--~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~ 759 (1032)
........++..|..+..........+.+.+.. ..+...+..+..|... .|.+ -|.|...+..+-.+...+..
T Consensus 711 ~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~---eL~~--~GvD~~~I~~l~~~i~~L~~ 785 (1201)
T PF12128_consen 711 QLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQ---ELAG--KGVDPERIQQLKQEIEQLEK 785 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 455556677888999999888888888877764 7888888888888885 3543 44455566555555555544
Q ss_pred HH---HHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 760 SL---AAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDS 831 (1032)
Q Consensus 760 ~l---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~ 831 (1032)
+| ..+++.|...++-++..=+.+..+...-..+.. ....+...+..+..++......+..+...++..
T Consensus 786 ~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~ 856 (1201)
T PF12128_consen 786 ELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEE----QLRDLEQELQELEQELNQLQKEVKQRRKELEEE 856 (1201)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 444555554422111100000000000000000 112345555566666666666666666666653
No 21
>KOG4674|consensus
Probab=98.06 E-value=0.098 Score=66.38 Aligned_cols=183 Identities=14% Similarity=0.154 Sum_probs=84.8
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--
Q psy6936 294 QTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIH---SDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY-LH-- 367 (1032)
Q Consensus 294 ~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~---~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~-~~-- 367 (1032)
.....++..+.-++....+.+.++........+.- ..........+..+...++..+..+......++.... +.
T Consensus 394 ~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~ 473 (1822)
T KOG4674|consen 394 SKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDL 473 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777778888888777776654321 1122233334444444444444444444433333221 11
Q ss_pred -----HHHHHHHHH-------HHHHHHHHHHhcc---cc----ccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhh
Q psy6936 368 -----RFLADYRDL-------ISWVSDMKAIISA---DE----LAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428 (1032)
Q Consensus 368 -----~f~~~~~~l-------~~Wl~~~e~~l~~---~~----~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~ 428 (1032)
.+...+.++ ..-++.+...... .+ .+..-.-+...|-.|..+..-+.....-+..++..+.
T Consensus 474 ~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae 553 (1822)
T KOG4674|consen 474 ERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAE 553 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 122222222 2222222221111 11 0111123444555555555444444444455555555
Q ss_pred hhhhcCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6936 429 SLLDRNHYA----ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFY 476 (1032)
Q Consensus 429 ~L~~~~~~~----~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~ 476 (1032)
.+-....+. ...++..+.........|.....+....+...+.-+.++
T Consensus 554 ~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y 605 (1822)
T KOG4674|consen 554 KLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMY 605 (1822)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554322221 233455666666666666666666666665555444444
No 22
>KOG0994|consensus
Probab=98.00 E-value=0.072 Score=62.79 Aligned_cols=121 Identities=16% Similarity=0.253 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhH
Q psy6936 340 AEIVEYWERLTGKAKGRKQKLDESY-YL------HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGE 412 (1032)
Q Consensus 340 ~~l~~~w~~l~~~~~~r~~~L~~~~-~~------~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~ 412 (1032)
-.--..|+.+...+..|..+|...- .+ ..|...+..+...|..+...|....+ ..++++..-.....+.+.
T Consensus 1163 h~CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~sv--s~~~i~~l~~~~~~lr~~ 1240 (1758)
T KOG0994|consen 1163 HECFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSV--SAEDIAQLASATESLRRQ 1240 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHHHHH
Confidence 3456679999998888887776643 22 46889999999999999988876532 345555555555555555
Q ss_pred HHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 413 IDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILY 466 (1032)
Q Consensus 413 l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L 466 (1032)
|......+..+...-..+-+ ..+.....|+.|+.....|.....+...++
T Consensus 1241 l~~~~e~L~~~E~~Lsdi~~----~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1241 LQALTEDLPQEEETLSDITN----SLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred HHHHHhhhhhhhhhhhhhhh----ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433333322222222221 122223445555555555555444444333
No 23
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.55 E-value=0.62 Score=60.27 Aligned_cols=122 Identities=12% Similarity=0.161 Sum_probs=82.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchHHHHHhHHHHHhhhccccCCCCh----------HHH
Q psy6936 904 ASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQ-QQGFNRTIEDIELWLSEIEGQLMSEDYGKDL----------TSV 972 (1032)
Q Consensus 904 ~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~-~~~~~~~~~~l~~wL~~~e~~L~~~~~~~~~----------~~~ 972 (1032)
..+.|+..+..+...+..+.....+....+..+.+ ...+...++.+..-+.+.+..|...-++.+. .++
T Consensus 986 ~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l 1065 (1486)
T PRK04863 986 LNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDEL 1065 (1486)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHH
Confidence 34899999999999999999999999888888884 5788888888888888888888763222111 111
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhc
Q psy6936 973 QNL----QKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029 (1032)
Q Consensus 973 ~~~----l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~~l~ 1029 (1032)
... ..+...++..+...+.+|+++......+- .+...+...+..++.+|-.+.
T Consensus 1066 ~~~l~~~~~~~~~~~~~~~~re~EIe~L~kkL~~~~----~e~~~~re~I~~aK~~W~~v~ 1122 (1486)
T PRK04863 1066 HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLE----RDYHEMREQVVNAKAGWCAVL 1122 (1486)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 111 22233444555555566666655544432 234567788888888887653
No 24
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.27 E-value=0.66 Score=54.35 Aligned_cols=119 Identities=16% Similarity=0.235 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHH
Q psy6936 334 QIQAKRAEIVEYWERLT-GKAKGRKQKLDESYY---LHRFL---ADYRDLISWVSDMKAIISADELAKDVAGAEALLERH 406 (1032)
Q Consensus 334 ~i~~~~~~l~~~w~~l~-~~~~~r~~~L~~~~~---~~~f~---~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~ 406 (1032)
......+..+..|+.+. ..+.+....|-++-. .+.|. ..+..+..-|..++..+... ...+...+...
T Consensus 57 qt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i-----~~~l~~L~~~e 131 (560)
T PF06160_consen 57 QTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEI-----LDELDELLESE 131 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 34667888888888888 556666666654442 22332 33344444455544433221 12233333333
Q ss_pred HhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHH
Q psy6936 407 QEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLT 457 (1032)
Q Consensus 407 ~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~ 457 (1032)
..-...+......+..+......--..-+|..+.+...+..+...+..+..
T Consensus 132 ~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~ 182 (560)
T PF06160_consen 132 EKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEE 182 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333333333322221112235566677777777766665554
No 25
>KOG0161|consensus
Probab=97.18 E-value=1.6 Score=57.04 Aligned_cols=133 Identities=14% Similarity=0.226 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHhhhhhHHHHHHHhhhhhccccCCCCcchhHHHHHhh
Q psy6936 802 DVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF--------QQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKH 873 (1032)
Q Consensus 802 ~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~--------~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~l~~~l~~~ 873 (1032)
.+..+......+|..+...+..-+..|+.-... .....+++++..+++.+.... ..+..++.+.
T Consensus 1566 ~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~--------~d~~K~lkk~ 1637 (1930)
T KOG0161|consen 1566 RLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKAN--------EDAQKQLKKL 1637 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhh--------HHHHHHHHhh
Confidence 345566666667777666666666666642111 123445566666666543321 1122222222
Q ss_pred HHHHHHHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhchHHHHHh
Q psy6936 874 QNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQ-QQGFNRTIEDIELW 952 (1032)
Q Consensus 874 ~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~-~~~~~~~~~~l~~w 952 (1032)
+ ..+......++.... ....+...+.....+...+.+.+.+.+..++.+.. ..+....+.++..-
T Consensus 1638 q---~~~k~lq~~~e~~~~-----------~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~ 1703 (1930)
T KOG0161|consen 1638 Q---AQLKELQRELEDAQR-----------AREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAER 1703 (1930)
T ss_pred H---HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 111111111111111 12566677777778888888888888777777764 34555556666555
Q ss_pred HHHH
Q psy6936 953 LSEI 956 (1032)
Q Consensus 953 L~~~ 956 (1032)
+...
T Consensus 1704 i~~~ 1707 (1930)
T KOG0161|consen 1704 VNEL 1707 (1930)
T ss_pred HHHH
Confidence 5443
No 26
>KOG0994|consensus
Probab=97.00 E-value=1.3 Score=52.86 Aligned_cols=122 Identities=15% Similarity=0.198 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHH------HHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHH
Q psy6936 236 LSEAWMRLKQLALMRQEKLFGA-HEI------QRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLA 308 (1032)
Q Consensus 236 l~~rw~~l~~~~~~r~~~Le~~-~~~------~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~ 308 (1032)
--..|+.+.+.+..|-..|... ..+ ..|...+.++..-|.++...|+...+ +...+++.-...+.+.+.|.
T Consensus 1165 CF~~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~sv--s~~~i~~l~~~~~~lr~~l~ 1242 (1758)
T KOG0994|consen 1165 CFQTWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSV--SAEDIAQLASATESLRRQLQ 1242 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777766665 443 45888899999999999888865433 44556666666666777666
Q ss_pred HhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 309 ALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDES 363 (1032)
Q Consensus 309 ~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 363 (1032)
.....+..+...-..+....+. -...++.|......|.....+....++..
T Consensus 1243 ~~~e~L~~~E~~Lsdi~~~~~~----a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1243 ALTEDLPQEEETLSDITNSLPL----AGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHHhhhhhhhhhhhhhhhccch----hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666665555554444333331 23456666666666666666665555543
No 27
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.81 E-value=1.7 Score=51.06 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=57.0
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy6936 300 HEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY-LHRFLADYRDLIS 378 (1032)
Q Consensus 300 ~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~-~~~f~~~~~~l~~ 378 (1032)
.+.+...+......+..+.... ..+....+.|...+..+..+...+......-...|..... -..-...+..+..
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i----~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERI----EEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433222 2233335667777777777776666666665555555443 2344556667777
Q ss_pred HHHHHHHHhccccccCCHHHHHHHH
Q psy6936 379 WVSDMKAIISADELAKDVAGAEALL 403 (1032)
Q Consensus 379 Wl~~~e~~l~~~~~~~d~~~~~~~l 403 (1032)
-|..+...+....+|+-|.+....+
T Consensus 422 ~l~~ikR~lek~nLPGlp~~y~~~~ 446 (560)
T PF06160_consen 422 KLREIKRRLEKSNLPGLPEDYLDYF 446 (560)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 7777777777777777665544433
No 28
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.57 E-value=2.5 Score=49.90 Aligned_cols=420 Identities=16% Similarity=0.194 Sum_probs=189.2
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHH
Q psy6936 334 QIQAKRAEIVEYWER-LTGKAKGRKQKLDESYY---LHRFLA---DYRDLISWVSDMKAIISADELAKDVAGAEALLERH 406 (1032)
Q Consensus 334 ~i~~~~~~l~~~w~~-l~~~~~~r~~~L~~~~~---~~~f~~---~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~ 406 (1032)
.-....+..+..|.. +...+......|.++-. -++|.. .+..+..-|+.++..+... ...+...+...
T Consensus 61 es~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i-----~~~l~~l~~~e 135 (569)
T PRK04778 61 QSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQI-----LEELQELLESE 135 (569)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 355677888888888 44455555555555443 234433 3344555555555544321 12344444444
Q ss_pred HhhHhHHHHhhhhHHHHHHhhhhhhhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q psy6936 407 QEHKGEIDAREDSFRGTADAGQSLLDRN---HYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQAD 483 (1032)
Q Consensus 407 ~~l~~~l~~~~~~~~~l~~~~~~L~~~~---~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~ 483 (1032)
..-...+......+..+.. .|+... +|..+.+...+..++..+..+..... ..+..+..
T Consensus 136 ~~nr~~v~~l~~~y~~~rk---~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~---------------~Gd~~~A~ 197 (569)
T PRK04778 136 EKNREEVEQLKDLYRELRK---SLLANRFSFGPALDELEKQLENLEEEFSQFVELTE---------------SGDYVEAR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhc---------------CCCHHHHH
Confidence 4445555554444444433 333332 36677888888888877776654321 11111111
Q ss_pred HHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhhhcCC-CChhHHHHHHHHHHHHHHHH
Q psy6936 484 TWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAA-QEEKIKALDEFATKLIEGQH-YAADDVAQRRDLLLKRRAGL 561 (1032)
Q Consensus 484 ~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~-~~~~~~~l~~~~~~L~~~~~-~~~~~i~~~~~~l~~r~~~l 561 (1032)
.-+...+.. +..++..+...-.+..++.. .-..+..|....+.|...+- .+...|...+..+..+....
T Consensus 198 e~l~~l~~~---------~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 198 EILDQLEEE---------LAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHH
Confidence 112221111 12233333333333333333 33556666777777776542 23345666666665554443
Q ss_pred HHHHHHHHHHHHhhHh-hhh-HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHHHHhch-----hhh
Q psy6936 562 LEKSARRRAILEDSYK-FQQ-FEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISA-----DEL 634 (1032)
Q Consensus 562 ~~~~~~r~~~L~~~~~-~~~-~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~-----~~~ 634 (1032)
...+..- .|+.... ... -..|..-|+.+..-+..+ .........+..-+..+...... ..+
T Consensus 269 ~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~----------~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 269 LALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKAR----------KYVEKNSDTLPDFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222110 0000000 000 001222222222221111 12223333333333333322110 000
Q ss_pred ccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 635 AKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL 714 (1032)
Q Consensus 635 ~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~ 714 (1032)
..+-.--+..+.....+..++......+..+... + .......+.++..+..+..+...+...-..-...+...-..
T Consensus 337 ~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~---i-~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 337 KQSYTLNESELESVRQLEKQLESLEKQYDEITER---I-AEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHccccCchhHHHHHHHHHHHHHHHHHHHHHHHH---H-HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000112233444444444443344432222 1 11122245677777777776666666555555555443332
Q ss_pred -HHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhh
Q psy6936 715 -QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLI 793 (1032)
Q Consensus 715 -~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~ 793 (1032)
......+..+..-|......+....+|+-++..... +... ...+. .....|-
T Consensus 413 E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~---~~~~-------~~~i~-----------------~l~~~L~ 465 (569)
T PRK04778 413 ELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEM---FFEV-------SDEIE-----------------ALAEELE 465 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH---HHHH-------HHHHH-----------------HHHHHhc
Confidence 233333444444455555555555555544433222 2222 22232 2233444
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 794 EGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILE 829 (1032)
Q Consensus 794 ~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le 829 (1032)
. ++.+...|...+..+..+++.|.....+-.....
T Consensus 466 ~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~ 500 (569)
T PRK04778 466 E-KPINMEAVNRLLEEATEDVETLEEETEELVENAT 500 (569)
T ss_pred c-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 7888888988999999999988877665544433
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.46 E-value=2.8 Score=49.39 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhH
Q psy6936 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY-LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 410 (1032)
Q Consensus 332 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~-~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~ 410 (1032)
.+.+...+..+..+...+...-..-...+..... -......+..+..-+......+....+|+-|......+. ...
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~---~~~ 454 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFF---EVS 454 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHH---HHH
Confidence 6677777777777777777776666666555433 233444555556666666666666666766654443332 222
Q ss_pred hHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 411 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEE 461 (1032)
Q Consensus 411 ~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~ 461 (1032)
..+. .....|-. +|-+-..|...+..+..+++.|.....+
T Consensus 455 ~~i~----------~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~d 494 (569)
T PRK04778 455 DEIE----------ALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEE 494 (569)
T ss_pred HHHH----------HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22223333 4555666777777777777777665444
No 30
>PRK02224 chromosome segregation protein; Provisional
Probab=95.89 E-value=7.8 Score=49.07 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcHHHH
Q psy6936 442 REKLRNLENDKTHLLTLWEERRILYEQCM-DLQLFYRDTEQA 482 (1032)
Q Consensus 442 ~~~l~~l~~~w~~l~~~~~~r~~~L~~~~-~~~~f~~~~~~l 482 (1032)
...+..+..+++.+......+...++... ....+...+..+
T Consensus 508 ~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l 549 (880)
T PRK02224 508 EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45556666666666666665555555544 223344444443
No 31
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=95.75 E-value=6.3 Score=46.94 Aligned_cols=279 Identities=12% Similarity=0.150 Sum_probs=133.6
Q ss_pred HHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCch-HHHHHH
Q psy6936 155 VQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERE-TIVRRK 233 (1032)
Q Consensus 155 ~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~-~i~~~~ 233 (1032)
......+.++..|+.+....+... -.+++.|...+.++..+-... ....+.+. ..++.. .+....
T Consensus 32 ~a~~~~~~qi~~Wi~k~k~~l~~L--~~~l~~ID~ai~~~l~lIe~~----------v~~ie~~q--~r~di~~~~~dl~ 97 (683)
T PF08580_consen 32 KALSGAAEQILDWIQKAKDVLYGL--REGLEEIDSAISRFLDLIEVY----------VSAIEDLQ--LREDIANSLFDLI 97 (683)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhh----------cccccccc--ccccccccHHHHH
Confidence 344556778889998877666443 223344444444444333221 00000000 000100 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH--------HHHHHhHHHHHHHHHHHhh-hcCcc--c-c-CCCHHHHHHHH---
Q psy6936 234 EELSEAWMRLKQLALMRQEKLFGAHEI--------QRFNRDADETVAWIAEKDA-VLSSD--E-Y-GRDLASVQTLQ--- 297 (1032)
Q Consensus 234 ~~l~~rw~~l~~~~~~r~~~Le~~~~~--------~~f~~~~~~~~~Wl~~~e~-~l~~~--~-~-~~d~~~~~~~l--- 297 (1032)
+.+.+.-..+...+...+.+++-+++| ......++++..++-++++ .+.+. . + ..+++.+-+.+
T Consensus 98 e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~ 177 (683)
T PF08580_consen 98 EEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSS 177 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhcccc
Confidence 222222225556666666666666543 2344556666666666643 23221 0 1 12333333333
Q ss_pred ---------------------HHhhhHHHHHHHhHHHHHHHHHHHHHhhhc----CCCCchhHHHHHHHHHHHHHHHHHH
Q psy6936 298 ---------------------RKHEGVERDLAALEDKVSTLGAEADRLCGI----HSDHGDQIQAKRAEIVEYWERLTGK 352 (1032)
Q Consensus 298 ---------------------~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~----~~~~~~~i~~~~~~l~~~w~~l~~~ 352 (1032)
..+-.|..-|...+..++-|=.+.+.+-.- .|.....|..+-+.|..+|..|...
T Consensus 178 ~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~Ri~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e 257 (683)
T PF08580_consen 178 TNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPMRIEEFQSRAESIFPSACEELEDRYERLEKKWKKLEKE 257 (683)
T ss_pred CCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133344444555555555444444433222 2445678999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccc----ccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhh
Q psy6936 353 AKGRKQKLDESYYL-HRFLADYRDLISWVSDMKAIISADE----LAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAG 427 (1032)
Q Consensus 353 ~~~r~~~L~~~~~~-~~f~~~~~~l~~Wl~~~e~~l~~~~----~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~ 427 (1032)
+..-+..|-+.. | .-|.....++..-++.++..+.... .+.....-.....++...++-+...-+.+. ...+
T Consensus 258 ~~~LK~ELiedR-W~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~--ka~~ 334 (683)
T PF08580_consen 258 AESLKKELIEDR-WNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIY--KARV 334 (683)
T ss_pred HHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHH--HHHH
Confidence 988776665532 2 2344455556555666655543211 111111112222222222222222211110 0223
Q ss_pred hhhhhcCCCChHHHHHHHH-HHHHHHHHHH
Q psy6936 428 QSLLDRNHYAADDIREKLR-NLENDKTHLL 456 (1032)
Q Consensus 428 ~~L~~~~~~~~~~i~~~l~-~l~~~w~~l~ 456 (1032)
..|+.. .|.+++. +|..+|..|.
T Consensus 335 ~sIi~~------gv~~r~n~~L~~rW~~L~ 358 (683)
T PF08580_consen 335 LSIIDK------GVADRLNADLAQRWLELK 358 (683)
T ss_pred HHhhhh------hHHHHhhHHHHHHHHHHH
Confidence 335432 2677777 9999999996
No 32
>PRK02224 chromosome segregation protein; Provisional
Probab=95.42 E-value=11 Score=47.65 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKLDE 362 (1032)
Q Consensus 332 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~ 362 (1032)
...+..+...+......+...+......+..
T Consensus 309 ~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~ 339 (880)
T PRK02224 309 AEAVEARREELEDRDEELRDRLEECRVAAQA 339 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666665554444
No 33
>KOG4674|consensus
Probab=93.16 E-value=38 Score=44.47 Aligned_cols=346 Identities=14% Similarity=0.142 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhccCCC---CChhhHHHHHHh-hHH
Q psy6936 16 NDIQERREQVLNRYADFKSEARSKREKLEDSR-RFQYFKRDADELESWIYEKLQAASDESY---KETTNLQAKIQK-HQA 90 (1032)
Q Consensus 16 ~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~-~~~~f~~~~~~~~~Wl~~~~~~l~~~~~---~~~~~~~~~l~~-~~~ 90 (1032)
.-|...+..++..|..+...-......|..-+ ....=...+..=..|+......++.-.. .++..+...... ...
T Consensus 195 ~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~k 274 (1822)
T KOG4674|consen 195 KWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEK 274 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45677777777777777777333333333321 1111112233333455544333322110 122222211111 235
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH----HHHHHH-HHhHHHH
Q psy6936 91 FEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQAL----VLVQFI-RQCDEVM 165 (1032)
Q Consensus 91 l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l----~~~~f~-~~~~~~~ 165 (1032)
|..++..+....+-.......+.. .+..+...+..+...+++....+.++...|..+- ....+. ..+..+.
T Consensus 275 f~~El~~q~kL~eL~ks~~ee~~~----~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le 350 (1822)
T KOG4674|consen 275 FEKELSTQKKLNELWKSKLEELSH----EVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLE 350 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666776666555555555555432 2334555566666666666666665544443322 122222 4445555
Q ss_pred HhHHhhhhhhcc----c-------------ccCCCHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---c
Q psy6936 166 FWINDKEAFVTA----D-------------EFGADLEHV----EVLQRKFDEFQKDMASQEYRVTEVNQLADKLVL---E 221 (1032)
Q Consensus 166 ~wl~~~e~~l~~----~-------------~~~~d~~~~----~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~---~ 221 (1032)
.-|.++-..+.. . -++..+..+ ....+++..+.-+++...+.+.++...+..... .
T Consensus 351 ~~l~~an~~~~~~~~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~ 430 (1822)
T KOG4674|consen 351 GELEDANDSLSATGESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKE 430 (1822)
T ss_pred HHHHhhhhhHHhhcccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 444444433221 0 112222222 223455666777777777777777776665422 1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHhHHHH-------HHHHHHHhhh---cCc
Q psy6936 222 GHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGA--------HEIQRFNRDADET-------VAWIAEKDAV---LSS 283 (1032)
Q Consensus 222 ~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~--------~~~~~f~~~~~~~-------~~Wl~~~e~~---l~~ 283 (1032)
.......+...+..+...++....-+..-...++.+ .+...+...++.+ ..=++++... ..+
T Consensus 431 qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~ 510 (1822)
T KOG4674|consen 431 QRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVS 510 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 111111222222233333333222222222222222 1112222222222 2222332211 111
Q ss_pred -c---ccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcC-C---CCchhHHHHHHHHHHHHHHHHHHHHH
Q psy6936 284 -D---EYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIH-S---DHGDQIQAKRAEIVEYWERLTGKAKG 355 (1032)
Q Consensus 284 -~---~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~-~---~~~~~i~~~~~~l~~~w~~l~~~~~~ 355 (1032)
. +.+.+-..|...+-.++.+..-+..-...+..+-..|+.+-..- + .....++..+..+..+...|.....+
T Consensus 511 s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e 590 (1822)
T KOG4674|consen 511 SDSTENESDSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEE 590 (1822)
T ss_pred ccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233344666666666666555555555555656666554322 2 11334555666666666777666666
Q ss_pred HHHHHHHHHH
Q psy6936 356 RKQKLDESYY 365 (1032)
Q Consensus 356 r~~~L~~~~~ 365 (1032)
....++..+.
T Consensus 591 ~~~~i~sLl~ 600 (1822)
T KOG4674|consen 591 QEQRIESLLT 600 (1822)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 34
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=91.48 E-value=38 Score=40.61 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCc---c-ccC---CCHHHHHHHHHH
Q psy6936 227 ETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSS---D-EYG---RDLASVQTLQRK 299 (1032)
Q Consensus 227 ~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~---~-~~~---~d~~~~~~~l~~ 299 (1032)
..+..+-..|..+|..|...+..-+..|-+..=..-|.....++..-++.++..+.. . +.| .....+..++..
T Consensus 238 e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~vFr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s 317 (683)
T PF08580_consen 238 EELEDRYERLEKKWKKLEKEAESLKKELIEDRWNIVFRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIES 317 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Confidence 467777777888888888877776666555421122666666766666666655421 1 222 222333333333
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHH-HHHHHHHHHH
Q psy6936 300 HEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRA-EIVEYWERLT 350 (1032)
Q Consensus 300 ~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~-~l~~~w~~l~ 350 (1032)
+. .-+...-+.|-. +....|+.. . |..++. +|..+|..|.
T Consensus 318 ~~---~k~~~~~~~I~k--a~~~sIi~~-----g-v~~r~n~~L~~rW~~L~ 358 (683)
T PF08580_consen 318 KE---KKKSHYFPAIYK--ARVLSIIDK-----G-VADRLNADLAQRWLELK 358 (683)
T ss_pred HH---HHHhccHHHHHH--HHHHHhhhh-----h-HHHHhhHHHHHHHHHHH
Confidence 22 222221111100 111112221 1 667777 9999999997
No 35
>PRK03918 chromosome segregation protein; Provisional
Probab=90.72 E-value=57 Score=41.36 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q psy6936 36 ARSKREKLEDSRRFQYFKRDAD 57 (1032)
Q Consensus 36 ~~~r~~~L~~~~~~~~f~~~~~ 57 (1032)
-..|...|...+.+..|.....
T Consensus 144 ~~~r~~~~~~~~~~~~~~~~~~ 165 (880)
T PRK03918 144 DESREKVVRQILGLDDYENAYK 165 (880)
T ss_pred cHHHHHHHHHHhCCHHHHHHHH
Confidence 3456666666555545544443
No 36
>PF13514 AAA_27: AAA domain
Probab=89.23 E-value=83 Score=40.97 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=51.9
Q ss_pred HHHhHHHHHhHHhhhhhhccccc-------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCC-----
Q psy6936 158 IRQCDEVMFWINDKEAFVTADEF-------GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPE----- 225 (1032)
Q Consensus 158 ~~~~~~~~~wl~~~e~~l~~~~~-------~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~----- 225 (1032)
...+..+...+......+....+ ...++.+......+.....++......+..+......+...-+|+
T Consensus 255 ~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~ 334 (1111)
T PF13514_consen 255 QAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEED 334 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 33444455555555554443322 223445555555666777778777777777777766665433332
Q ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 226 ------RETIVRRKEELSEAWMRLKQLALMRQEKLF 255 (1032)
Q Consensus 226 ------~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le 255 (1032)
.......+..+..+...+...+..-...++
T Consensus 335 ~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~ 370 (1111)
T PF13514_consen 335 LEALDPSLAARERIRELLQEREQLEQALAQARRELE 370 (1111)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123444555555555555555444444444
No 37
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=88.94 E-value=50 Score=38.04 Aligned_cols=357 Identities=13% Similarity=0.139 Sum_probs=160.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HHHH-HHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHH-HH
Q psy6936 119 ASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALV-LVQF-IRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRK-FD 195 (1032)
Q Consensus 119 ~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~-~~~f-~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~-~~ 195 (1032)
+..-+......|...|+.+...+..|...+...-. +... ....+.+..-|...-..+....+- .+.++...+.+ ..
T Consensus 59 d~~l~~~~~~~l~~~w~~v~~~~~~r~~~I~~l~~~L~~~E~~R~~~l~~~l~~~~~~L~~ia~~-~~~dv~rli~~ea~ 137 (473)
T PF14643_consen 59 DSALLEYSIQDLLELWDEVAEHSQKRKQWIKELDEDLEELEKERADKLKKVLRKYVEILEKIAHL-LPPDVERLIEKEAM 137 (473)
T ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CcHHHHHHHHHHHH
Confidence 33456777889999999999998888877775432 2221 222344444455444444432211 12234333332 23
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q psy6936 196 EFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIA 275 (1032)
Q Consensus 196 ~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~ 275 (1032)
.+...+-..+..+..+. ..|.. ..++ .-.....+|......|+.- ++...+..+.
T Consensus 138 ~iN~~ll~Nrra~a~L~---~~L~~------~~~~-~e~~~~~~w~~~~~~Wr~l-----------~~~~~i~~f~---- 192 (473)
T PF14643_consen 138 EINQALLGNRRAYADLF---ANLME------AELQ-RELSYRRRWQDRVDDWRAL-----------RHERAIQEFR---- 192 (473)
T ss_pred HHHHHHHHhHHHHHHHH---HHHHH------HHHH-HHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHH----
Confidence 34444433333332221 11111 1121 2224556666666666431 1222222222
Q ss_pred HHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCC-CCchhHHHHHHHHHHHHHHHHHHHH
Q psy6936 276 EKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHS-DHGDQIQAKRAEIVEYWERLTGKAK 354 (1032)
Q Consensus 276 ~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~-~~~~~i~~~~~~l~~~w~~l~~~~~ 354 (1032)
..+.+..+ .+|+.+...+..+..-+..+.. ..+.-|...+.-+.+..+ .........+..++..|+.....+.
T Consensus 193 ---~~~~s~~~-~~P~~~~~~~e~~~~~Q~~l~~--~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~ 266 (473)
T PF14643_consen 193 ---EFMASEEF-QNPPERKQLLEQMRKEQVDLHE--KRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQQCM 266 (473)
T ss_pred ---HHhCcccc-CCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333 5666777777766666655442 223333322222222211 1234455667777777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHH---------HHhhHhHHHHhhhhHHHHHH
Q psy6936 355 GRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER---------HQEHKGEIDAREDSFRGTAD 425 (1032)
Q Consensus 355 ~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~---------~~~l~~~l~~~~~~~~~l~~ 425 (1032)
.+...+.+.. +..+... +..+...|..... .+++++...+.. ...+...++.....++.+..
T Consensus 267 ~~lr~~~E~~-~~ec~~~-------ve~~k~~L~~~~~-~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~ 337 (473)
T PF14643_consen 267 EKLRALYEKI-CQECLAL-------VEKLKQELLDWKA-CTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAK 337 (473)
T ss_pred HHHHHHHHHH-HHHHHHH-------HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444322 1222222 2222222322211 133333333221 11122222221111211111
Q ss_pred hhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcHHHHHHHHHHHhhhhccCCCCCCHH
Q psy6936 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMD--LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLD 503 (1032)
Q Consensus 426 ~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~--~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~ 503 (1032)
.-. .....+-.-+..+-..|+.-...+......+...+. ...+.........=|...-..|.. +++.+
T Consensus 338 ~~~-------~~~~~L~~f~~~~~~lwd~h~~~l~~~e~~l~~~l~~~r~~~~~~~q~~E~~Ld~~~d~lRq---~s~ee 407 (473)
T PF14643_consen 338 QTE-------AQSEDLFKFFQEAAQLWDEHRKKLSKQEEELEKRLEQCREKHDQENQEKEAKLDIALDRLRQ---ASSEE 407 (473)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh---CCCHH
Confidence 111 112234444555556666666655555555555542 133555555555555554444432 34456
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q psy6936 504 SVEALIKKHEDFEKSLAAQEEKI 526 (1032)
Q Consensus 504 ~~~~~l~~~~~l~~el~~~~~~~ 526 (1032)
.++..+.+...+...|...+..+
T Consensus 408 ~L~~~l~~~~~~Ld~Ie~~Y~~f 430 (473)
T PF14643_consen 408 KLKEHLEKALDLLDQIEEEYEDF 430 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777666666666544443
No 38
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.28 E-value=36 Score=35.65 Aligned_cols=133 Identities=12% Similarity=0.140 Sum_probs=72.6
Q ss_pred cCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 286 YGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAE-IVEYWERLTGKAKGRKQKLDESY 364 (1032)
Q Consensus 286 ~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~-l~~~w~~l~~~~~~r~~~L~~~~ 364 (1032)
.+.+...+...+.+.+.+..+|..+. +......++.=.. .+..+-.++.. +...|.....+...-...
T Consensus 118 ~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~----~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~----- 186 (264)
T PF06008_consen 118 DQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELK----EAEDLLSRVQKWFQKPQQENESLAEAIRDD----- 186 (264)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHH----HHHHHHHHHHHHHhhHHHhhHHHHHHHHHH-----
Confidence 34556677777777777777776652 4444443322111 11122222222 233333333333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhh
Q psy6936 365 YLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLD 432 (1032)
Q Consensus 365 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~ 432 (1032)
+.+|...+.++..||.++........- -....+..+..+..-..+|......+......|..++.
T Consensus 187 -L~~~~~kL~Dl~~~l~eA~~~~~ea~~--ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 187 -LNDYNAKLQDLRDLLNEAQNKTREAED--LNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999998876654320 01233444555555566666666667777777777665
No 39
>PRK03918 chromosome segregation protein; Provisional
Probab=85.79 E-value=1.1e+02 Score=38.76 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy6936 687 LRNLEN 692 (1032)
Q Consensus 687 l~~l~~ 692 (1032)
+..+..
T Consensus 461 i~~l~~ 466 (880)
T PRK03918 461 LKRIEK 466 (880)
T ss_pred HHHHHH
Confidence 333333
No 40
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.98 E-value=54 Score=34.36 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHH
Q psy6936 181 GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEE-LSEAWMRLKQLALMRQEKLFGAHE 259 (1032)
Q Consensus 181 ~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~-l~~rw~~l~~~~~~r~~~Le~~~~ 259 (1032)
+.+...+...+.+.+.+..+|..+. +......++.-... +..+-.++.. +...|.........-.. .
T Consensus 119 ~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~----A~~LL~~v~~~~~~~~~~~~~l~~~i~~------~ 186 (264)
T PF06008_consen 119 QLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKE----AEDLLSRVQKWFQKPQQENESLAEAIRD------D 186 (264)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHH----HHHHHHHHHHHHhhHHHhhHHHHHHHHH------H
Confidence 4555677777777777777776552 33333332221110 0111111111 23333333333322222 4
Q ss_pred HHHHHHhHHHHHHHHHHHhhhcCcc-ccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhh
Q psy6936 260 IQRFNRDADETVAWIAEKDAVLSSD-EYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCG 326 (1032)
Q Consensus 260 ~~~f~~~~~~~~~Wl~~~e~~l~~~-~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~ 326 (1032)
+.+|...+.++..||.++....... .+ .......+..++.-..+|......+......|..++.
T Consensus 187 L~~~~~kL~Dl~~~l~eA~~~~~ea~~l---n~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 187 LNDYNAKLQDLRDLLNEAQNKTREAEDL---NRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999987766421 12 1123333444444455555666666666666665543
No 41
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=82.92 E-value=85 Score=35.08 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=34.7
Q ss_pred hHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q psy6936 80 NLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELL 137 (1032)
Q Consensus 80 ~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L 137 (1032)
.-+...+++..|+.|+......|......+..-- ........+...+..|......|
T Consensus 88 e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 88 EKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCChhhHHHHHHHHHHHHHHh
Confidence 3445566677777788777777766654433321 22223445677777788777776
No 42
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=79.68 E-value=1.1e+02 Score=34.22 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHH
Q psy6936 291 ASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERL 349 (1032)
Q Consensus 291 ~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l 349 (1032)
...+...+++..|+.||......|..+...+..-. ........+...+..|......+
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD-EEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCChhhHHHHHHHHHHHHHHh
Confidence 34456677888889998888888887765544332 12223455777888888888777
No 43
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.69 E-value=2.5e+02 Score=36.79 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=8.5
Q ss_pred hHHHHHHHHHH
Q psy6936 906 DKIRQRMEQIV 916 (1032)
Q Consensus 906 ~~i~~~l~~l~ 916 (1032)
+.|..-||..|
T Consensus 1095 DEVDAaLD~~N 1105 (1163)
T COG1196 1095 DEVDAALDDAN 1105 (1163)
T ss_pred ccchhhccHHH
Confidence 77887777776
No 44
>PF13514 AAA_27: AAA domain
Probab=75.01 E-value=2.7e+02 Score=36.33 Aligned_cols=306 Identities=16% Similarity=0.176 Sum_probs=139.8
Q ss_pred hhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH---hHhHHHHHHHH
Q psy6936 79 TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEK---GMKLQQALVLV 155 (1032)
Q Consensus 79 ~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r---~~~L~~~l~~~ 155 (1032)
..+-..+.+++.+..++............ +...+..+...+..+....... ...|+.....+
T Consensus 150 ~~in~~l~~l~e~~~~l~~~~~~~~~y~~---------------l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~ 214 (1111)
T PF13514_consen 150 PEINQALKELKELERELREAEVRAAEYQE---------------LQQALEEAEEELEELRAELKELRAELRRLERLRRAW 214 (1111)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666677777777666554443333322 3333444444444444433322 23333333334
Q ss_pred HHHHHhHHHHHhHHhhhhhhcccccC-CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCch--HHHHH
Q psy6936 156 QFIRQCDEVMFWINDKEAFVTADEFG-ADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERE--TIVRR 232 (1032)
Q Consensus 156 ~f~~~~~~~~~wl~~~e~~l~~~~~~-~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~--~i~~~ 232 (1032)
-++.....+...|..... .+.+| .....+.....+...+...+......+..+......+ .++.+ .....
T Consensus 215 p~~~~~~~l~~~l~~l~~---~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l----~~~~~ll~~~~~ 287 (1111)
T PF13514_consen 215 PLLAELQQLEAELAELGE---VPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDAL----PVDEELLAHAAE 287 (1111)
T ss_pred HHHHHHHHHHHHHHhcCC---cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHhhHHH
Confidence 444455555555543321 12233 3345555566666667777777777776666554443 22221 22333
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCc---------c-ccCCCHHHHHHHHHH
Q psy6936 233 KEELSEAWMR---LKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSS---------D-EYGRDLASVQTLQRK 299 (1032)
Q Consensus 233 ~~~l~~rw~~---l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~---------~-~~~~d~~~~~~~l~~ 299 (1032)
+..|..+... ....+..+.. .+..+...+......+.. . +.......+..+...
T Consensus 288 I~~L~~~~~~~~~~~~dl~~~~~-------------e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~l~~~ 354 (1111)
T PF13514_consen 288 IEALEEQRGEYRKARQDLPRLEA-------------ELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRELLQE 354 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHHHHHH
Confidence 4444433333 2233333333 233333333333222321 0 111233456666777
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhhhc----C-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 300 HEGVERDLAALEDKVSTLGAEADRLCGI----H-SDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYR 374 (1032)
Q Consensus 300 ~~~l~~ei~~~~~~l~~l~~~~~~L~~~----~-~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~ 374 (1032)
+..+...+...+..+......-..+... . +.+...+...+....... ++...+......+... -......+.
T Consensus 355 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~~~~-d~~~~~~~~~~~~~~~--~~~l~~~l~ 431 (1111)
T PF13514_consen 355 REQLEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQRLG-DLEARLQEAEQALEAA--ERRLAAALA 431 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHHhcc-cHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 7777766666666555555544444322 1 123344444444443322 2222222222222211 123444555
Q ss_pred HHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHH
Q psy6936 375 DLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTA 424 (1032)
Q Consensus 375 ~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~ 424 (1032)
.+..|-..... +...++| +...+......+..+...+......+..+.
T Consensus 432 ~L~~w~~~~~~-l~~~~~P-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1111)
T PF13514_consen 432 ALGPWSGDLDA-LAALPLP-SRETVEAFRAEFEELERQLRRARDRLEELE 479 (1111)
T ss_pred hcCCCCCChHH-HhccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555433 2333344 556677776666666666655544444333
No 45
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=74.11 E-value=3e+02 Score=36.35 Aligned_cols=9 Identities=33% Similarity=0.069 Sum_probs=3.7
Q ss_pred cCCCChHHH
Q psy6936 964 DYGKDLTSV 972 (1032)
Q Consensus 964 ~~~~~~~~~ 972 (1032)
+.+.|+...
T Consensus 1106 ~~~ld~~~~ 1114 (1164)
T TIGR02169 1106 DMFLDGVNV 1114 (1164)
T ss_pred ccccCHHHH
Confidence 334444433
No 46
>KOG0035|consensus
Probab=73.74 E-value=3.8 Score=48.91 Aligned_cols=301 Identities=14% Similarity=0.183 Sum_probs=172.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHhccCCC-C-ChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q psy6936 50 QYFKRDADELESWIYEKLQAASDESY-K-ETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRL 127 (1032)
Q Consensus 50 ~~f~~~~~~~~~Wl~~~~~~l~~~~~-~-~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l 127 (1032)
..|......-..|....+..+....+ . -+...++....|.++...+..++..+......+..+......++..+....
T Consensus 397 ~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~~~~~~~a~~~ 476 (890)
T KOG0035|consen 397 SKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLYDDAKLVAADC 476 (890)
T ss_pred hhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 45777777778888776666555433 2 246788888899999999999999999999888888665556677778888
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHH--------HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Q psy6936 128 EELHRLWELLLSKLAEKGMKLQQALV--------LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQK 199 (1032)
Q Consensus 128 ~~L~~~w~~L~~~~~~r~~~L~~~l~--------~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ 199 (1032)
..+.+.|.++..+...|...|..+.. ...|...+.-+..|+.-+............+.+.+.+.-.+..+..
T Consensus 477 q~i~dq~~~~~~ls~~r~pal~~~~~~~dk~~~~~le~a~Raa~~~~~l~~~~~d~~d~~~~~~ire~~~~~~a~~~~k~ 556 (890)
T KOG0035|consen 477 QHICDQWDDLGQLSRKRRPALMQMEKVLDKLAVLTLEFAKRAAPFNNWLKGVQEDLQDNEISYSIREIQRLRAADLQFKS 556 (890)
T ss_pred hhccccccccchhhhhhchhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcccchhccchHhhhccchhhhhhcc
Confidence 89999999988887777777765542 2567778899999999877666665556667777766666666555
Q ss_pred HHHhh---HHHHHHHHHHHHHHHHcCCC----C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHH
Q psy6936 200 DMASQ---EYRVTEVNQLADKLVLEGHP----E-RETIVRRKEELSEAWMRLKQLALMRQEKLFGAHE--------IQRF 263 (1032)
Q Consensus 200 ~l~~~---~~~l~~l~~~~~~l~~~~~~----~-~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~--------~~~f 263 (1032)
.+... ....-.....+.......+| + .+.+.. .+...|+.+......+..-+..... ...|
T Consensus 557 t~p~a~~~~~~~~~e~~e~~~~~~~~~~~~~~~~np~~~~---s~~~~~d~v~~~~~~~~~~~~~~~~~q~~~~s~~~~~ 633 (890)
T KOG0035|consen 557 TLPEADGEGQKISDEEKEREKVSEQLNPKIEPDTNPYTTL---SIYGKWDAVLSSVPDRDSIEANVHARQQPNESLRRVF 633 (890)
T ss_pred cCccccchhhhhhhhhhHHHHhhhhcCccccccccccccc---ccccchhhhcccccccchhhHHHHHhhccCccccccc
Confidence 43221 22222222222233322222 1 122221 2777888888887776664443321 1234
Q ss_pred HHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHH
Q psy6936 264 NRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIV 343 (1032)
Q Consensus 264 ~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~ 343 (1032)
-....-...|+-..........+ .+....+.++..++....-+....+.+..+....+.+.....++......-...+.
T Consensus 634 ~q~an~~~p~vp~~~~e~s~~~~-~~~gt~e~~~~rLr~~~~~~~~~k~~~~~~~~~~q~~~~~~~~~~~~~~~~~e~~~ 712 (890)
T KOG0035|consen 634 AQQANLDGPWVPAKMEESSRINI-NDQGTLEDRLERLRETEERSMNYKSNGDLLAKQHQLMQEDIIFENKHTRYTMEDLK 712 (890)
T ss_pred cccccCCCcccCchhhccccccc-ccCCCHHHHHHHHHHHHHHhhccCcchhHHHHHHHHhhhhccccccccccchhhcc
Confidence 45555555666555333321111 11122333333333333333334444444444443333322222222222344455
Q ss_pred HHHHHHHHHHH
Q psy6936 344 EYWERLTGKAK 354 (1032)
Q Consensus 344 ~~w~~l~~~~~ 354 (1032)
..|+.+...+.
T Consensus 713 ~g~e~~~~~~~ 723 (890)
T KOG0035|consen 713 VGWEELLTIIE 723 (890)
T ss_pred ccccccccccc
Confidence 55555544443
No 47
>KOG0971|consensus
Probab=72.76 E-value=2.2e+02 Score=34.36 Aligned_cols=93 Identities=13% Similarity=0.222 Sum_probs=48.1
Q ss_pred hhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCCC--c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q psy6936 865 NLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYA--S-DKIRQRMEQIVHLWESLATATEKKGNKLQEASQ--Q 939 (1032)
Q Consensus 865 ~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~--~-~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~--~ 939 (1032)
.+...+...+.|.-.+..++..+..+...++-=++.-+.. + +...++|+-+...+......+.++...+...+. .
T Consensus 942 ~~K~~~edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke 1021 (1243)
T KOG0971|consen 942 ALKAEIEDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKE 1021 (1243)
T ss_pred HHHHHHHhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667777777766665544322221110 0 334444554455555555555555444444442 2
Q ss_pred HHHhhchHHHHHhHHHHH
Q psy6936 940 QGFNRTIEDIELWLSEIE 957 (1032)
Q Consensus 940 ~~~~~~~~~l~~wL~~~e 957 (1032)
..|.+.++.|..-|+.+|
T Consensus 1022 ~efeetmdaLq~di~~lE 1039 (1243)
T KOG0971|consen 1022 KEFEETMDALQADIDQLE 1039 (1243)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467776666665555544
No 48
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=72.49 E-value=1.8e+02 Score=33.04 Aligned_cols=171 Identities=13% Similarity=0.175 Sum_probs=73.2
Q ss_pred HHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcHHH
Q psy6936 645 LERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-QLFYRDTEQ 723 (1032)
Q Consensus 645 l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~-~~f~~~~~~ 723 (1032)
+...+.|..+|++....++.+... +....-+-+.++..+..+...-..+.+.-..-...|.+.-.- ..-...+..
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~----~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~ 421 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILEN----IEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLER 421 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----hhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666776665565554433 222222234455555555554444444333333333222211 111223334
Q ss_pred HHHHHHHHHhhhcCCcCCCCHHHHHHHH----HhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCC
Q psy6936 724 ADTWMAKQEAFLSNEDLGDSLDSVEALI----KKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYA 799 (1032)
Q Consensus 724 l~~WL~~~e~~L~~~~~~~~~~~~~~~l----~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~ 799 (1032)
+..-|...-+.+....+|+=|...-.+. .+.+.+..+++...-.+..+..+..+.+..+..+...+..++..
T Consensus 422 ~~~~l~eikR~mek~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~---- 497 (570)
T COG4477 422 LKSKLHEIKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVEN---- 497 (570)
T ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4444444445554444444333332221 12222333333322223333333333333333334444444432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 800 ADDVAQRRDLLLKRRAGLLEKSARR 824 (1032)
Q Consensus 800 ~~~i~~~~~~l~~r~~~l~~~~~~r 824 (1032)
..+.+++-+...||..-...+...
T Consensus 498 -a~LaE~lIQY~NRYRs~~~~v~~~ 521 (570)
T COG4477 498 -AVLAEQLIQYGNRYRSRNAEVAKS 521 (570)
T ss_pred -HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 235566666677776655554443
No 49
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=70.97 E-value=1.3e+02 Score=30.88 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=83.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhch---hhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCC-hHHHHH
Q psy6936 610 RFLADYRDLISWVSDMKAIISA---DELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA-ADDIRE 685 (1032)
Q Consensus 610 ~f~~~~~~l~~Wl~~~e~~l~~---~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~-~~~i~~ 685 (1032)
...+.|.++-.=|..+..+|.. .+.+.+-..+.-.+.+.+.+.+++...+...- .++..++.- -...+.
T Consensus 20 ~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~p-------eii~~n~~VL~~lgke 92 (268)
T PF11802_consen 20 ELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTP-------EIIPLNPEVLLTLGKE 92 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC-------CcCCCCHHHHHHHHHH
Confidence 3556777777777788887753 23444445666777888888888877654433 233222111 134677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHhhhcCC
Q psy6936 686 KLRNLENDKTHLLTLWEERRILYEQCMDL-QLFYRDTEQADTWMAKQEAFLSNE 738 (1032)
Q Consensus 686 ~l~~l~~~w~~l~~~~~~r~~~Le~~l~~-~~f~~~~~~l~~WL~~~e~~L~~~ 738 (1032)
.+..+......+...+..+...|...+.. +.+..+..++..-|......|...
T Consensus 93 elqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~ 146 (268)
T PF11802_consen 93 ELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQ 146 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888888888888899999888877 788888888877777766665544
No 50
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.67 E-value=2.4e+02 Score=33.40 Aligned_cols=82 Identities=17% Similarity=0.230 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy6936 185 EHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVL-EGH--PERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQ 261 (1032)
Q Consensus 185 ~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~-~~~--~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~ 261 (1032)
+++...+..-+.++.+|+.....++.--..++.++- +.. +........+..|+.-++.|...+. ..+
T Consensus 505 ~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~----------~tG 574 (594)
T PF05667_consen 505 EEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVE----------ETG 574 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH----------Hhh
Confidence 345555666677777888777777776666666652 221 1223444555555555555555544 345
Q ss_pred HHHHhHHHHHHHHHH
Q psy6936 262 RFNRDADETVAWIAE 276 (1032)
Q Consensus 262 ~f~~~~~~~~~Wl~~ 276 (1032)
.+..++.++..+|+.
T Consensus 575 ~~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 575 TISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566677777777654
No 51
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=65.96 E-value=2.6e+02 Score=32.85 Aligned_cols=77 Identities=14% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCCChhhHHHHHHhhHHHHHHHHhhH
Q psy6936 20 ERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYKETTNLQAKIQKHQAFEAEVAAHS 99 (1032)
Q Consensus 20 ~~l~~l~~r~~~l~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~el~~~~ 99 (1032)
...+.+...|......++.+...|........|...++.+.. ..+.++..+....++.+.+..++..-.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~-----------~~ik~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK-----------KDIKNPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh-----------ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777654556667777765444 245677778888888888888876655
Q ss_pred HHHHHHHH
Q psy6936 100 NAIVVLDN 107 (1032)
Q Consensus 100 ~~v~~l~~ 107 (1032)
..+..+.+
T Consensus 233 ~~i~~~~~ 240 (555)
T TIGR03545 233 QKIKSAKN 240 (555)
T ss_pred HHHHHHHH
Confidence 55555443
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.10 E-value=2.2e+02 Score=31.18 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q psy6936 56 ADELESWIYEK 66 (1032)
Q Consensus 56 ~~~~~~Wl~~~ 66 (1032)
...+..||-..
T Consensus 45 F~~L~~WL~~~ 55 (359)
T PF10498_consen 45 FTSLCAWLISK 55 (359)
T ss_pred HHHHHHHHHHh
Confidence 34677898874
No 53
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.18 E-value=68 Score=32.47 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH--HHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHH
Q psy6936 229 IVRRKEELSEAWMRLKQL-ALMRQEKLFGAH--EIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVER 305 (1032)
Q Consensus 229 i~~~~~~l~~rw~~l~~~-~~~r~~~Le~~~--~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ 305 (1032)
|..-+..+..-|.++... ...-+.+|+.-+ ++..++.--+.+..|+...+-. ....+......|+..+..++.+++
T Consensus 17 v~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~Rk~IE~~MErFK~vEk 95 (233)
T PF04065_consen 17 VQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENRKLIEEQMERFKVVEK 95 (233)
T ss_pred HHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666552 233445555553 5666777777888888644322 112233334557777788888887
Q ss_pred HHHHhHHHHHHH
Q psy6936 306 DLAALEDKVSTL 317 (1032)
Q Consensus 306 ei~~~~~~l~~l 317 (1032)
+......+=..|
T Consensus 96 esKtKafSkeGL 107 (233)
T PF04065_consen 96 ESKTKAFSKEGL 107 (233)
T ss_pred Hhcccccchhhh
Confidence 765544444443
No 54
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.78 E-value=1.3e+02 Score=26.90 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=54.0
Q ss_pred ccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhc-------------CCCCchhHHHHHHHHHHHHHHHHH
Q psy6936 285 EYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGI-------------HSDHGDQIQAKRAEIVEYWERLTG 351 (1032)
Q Consensus 285 ~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~-------------~~~~~~~i~~~~~~l~~~w~~l~~ 351 (1032)
..|++...++.+-..++.+..++...+..+..+...-+.+... .......+...+..++.+|+.+..
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888876665544321 012345667777777777777777
Q ss_pred HHHHHHHHHHHH
Q psy6936 352 KAKGRKQKLDES 363 (1032)
Q Consensus 352 ~~~~r~~~L~~~ 363 (1032)
.+.++...+++.
T Consensus 90 llGEK~E~veEL 101 (120)
T PF12325_consen 90 LLGEKSEEVEEL 101 (120)
T ss_pred HhcchHHHHHHH
Confidence 777776665553
No 55
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=54.57 E-value=2.6e+02 Score=28.79 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=85.1
Q ss_pred hhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy6936 865 NLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYA-SDKIRQRMEQIVHLWESLATATEKKGNKLQEAS-QQQGF 942 (1032)
Q Consensus 865 ~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~-~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~-~~~~~ 942 (1032)
.+.-.+.+.+.+.+++..-+.. .-.++..++.- -...+..++.+....+.+...+..+...|..-+ ..+++
T Consensus 53 ql~ll~~~~k~L~aE~~qwqk~-------~peii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~LerEq~w 125 (268)
T PF11802_consen 53 QLSLLMMRVKCLTAELEQWQKR-------TPEIIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKEDLEREQQW 125 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-------CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566677666543322 22233222110 156678899999999999999999999999999 56899
Q ss_pred hhchHHHHHhHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy6936 943 NRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHF 1009 (1032)
Q Consensus 943 ~~~~~~l~~wL~~~e~~L~~~~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~ 1009 (1032)
....+++..-|......|.+.....+... -+..+...+...+..-+.+...-..|++...|
T Consensus 126 L~Eqqql~~sL~~r~~elk~~~~~~se~r------v~~el~~K~~~~k~~~e~Ll~~LgeFLeeHfP 186 (268)
T PF11802_consen 126 LDEQQQLLESLNKRHEELKNQVETFSESR------VFQELKTKIEKIKEYKEKLLSFLGEFLEEHFP 186 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999988888888876432222121 23345555666666666666666677766544
No 56
>PRK01156 chromosome segregation protein; Provisional
Probab=53.14 E-value=5.9e+02 Score=32.40 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q psy6936 37 RSKREKLEDSRRFQYFKRDA 56 (1032)
Q Consensus 37 ~~r~~~L~~~~~~~~f~~~~ 56 (1032)
..|...+...+....|....
T Consensus 149 ~~r~~~ld~~~~~~~~~~~~ 168 (895)
T PRK01156 149 AQRKKILDEILEINSLERNY 168 (895)
T ss_pred HHHHHHHHHHhChHHHHHHH
Confidence 56666666665554454433
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=52.88 E-value=6.7e+02 Score=32.99 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhchHHHHHhHHHHHhhh
Q psy6936 906 DKIRQRMEQIVHLWESLATATEKKGNKLQEASQ--QQGFNRTIEDIELWLSEIEGQL 960 (1032)
Q Consensus 906 ~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~--~~~~~~~~~~l~~wL~~~e~~L 960 (1032)
..+..+++.|...+.++..........+...-+ ...|....+.+..-+..+=..|
T Consensus 973 e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 973 EEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666655555555544444442 2455655555555554444333
No 58
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=50.97 E-value=2e+02 Score=26.31 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhc
Q psy6936 969 LTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029 (1032)
Q Consensus 969 ~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~~l~ 1029 (1032)
...+...-.++..+..++...+...+.....-...-.+-......+...+..+..|+.+|.
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555444443333322222224566777777777777664
No 59
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=50.46 E-value=4.4e+02 Score=30.13 Aligned_cols=99 Identities=13% Similarity=0.088 Sum_probs=46.5
Q ss_pred hhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy6936 300 HEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY-LHRFLADYRDLIS 378 (1032)
Q Consensus 300 ~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~-~~~f~~~~~~l~~ 378 (1032)
.+.|.+++.+....+..+...- ....-..+.++..++.+......+...-..-+..|..... --+-...+..+..
T Consensus 349 vr~~e~eL~el~~~~~~i~~~~----~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~ 424 (570)
T COG4477 349 VRKFEKELKELESVLDEILENI----EAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKS 424 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544444444443222 1222234556666666555555554443333333332211 0112234445566
Q ss_pred HHHHHHHHhccccccCCHHHHHHH
Q psy6936 379 WVSDMKAIISADELAKDVAGAEAL 402 (1032)
Q Consensus 379 Wl~~~e~~l~~~~~~~d~~~~~~~ 402 (1032)
-+....+.|..+.+|+=|+..-.+
T Consensus 425 ~l~eikR~mek~nLPGlPe~~l~l 448 (570)
T COG4477 425 KLHEIKRYMEKSNLPGLPETFLSL 448 (570)
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHH
Confidence 666666667666677666544433
No 60
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=49.42 E-value=3.9e+02 Score=29.33 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q psy6936 267 ADETVAWIAEK 277 (1032)
Q Consensus 267 ~~~~~~Wl~~~ 277 (1032)
...+..||-..
T Consensus 45 F~~L~~WL~~~ 55 (359)
T PF10498_consen 45 FTSLCAWLISK 55 (359)
T ss_pred HHHHHHHHHHh
Confidence 34667787664
No 61
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=48.13 E-value=3.5e+02 Score=28.40 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 803 VAQRRDLLLKRRAGLLEKSARRRAILED 830 (1032)
Q Consensus 803 i~~~~~~l~~r~~~l~~~~~~r~~~Le~ 830 (1032)
+.+++.++..+.+.+...+.........
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444443
No 62
>KOG0933|consensus
Probab=47.61 E-value=6.5e+02 Score=31.32 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=23.9
Q ss_pred hhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhH
Q psy6936 633 ELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSL 672 (1032)
Q Consensus 633 ~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L 672 (1032)
+.....+.++.....+++...+|......+....+.+..+
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~l 774 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTL 774 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456666666677777777776666665555555444
No 63
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=45.01 E-value=4.1e+02 Score=28.21 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=34.2
Q ss_pred HHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q psy6936 766 EKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDC 841 (1032)
Q Consensus 766 ~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~ 841 (1032)
..|+.+..+|.....-+......|+.|+..++ .+..+...+..........+..-++.|-.--.+-+|+.+.
T Consensus 62 ~Didavt~lLeEkerDLelaA~iGqsLl~~N~----~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~ 133 (306)
T PF04849_consen 62 NDIDAVTRLLEEKERDLELAARIGQSLLEQNQ----DLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSND 133 (306)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHhHHHHHhcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 34444444444333333334566677766543 2445555555555555555544444444333333444433
No 64
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.98 E-value=5.8e+02 Score=29.75 Aligned_cols=71 Identities=10% Similarity=0.037 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcC------CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 393 AKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRN------HYAADDIREKLRNLENDKTHLLTLWEERR 463 (1032)
Q Consensus 393 ~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~------~~~~~~i~~~l~~l~~~w~~l~~~~~~r~ 463 (1032)
+-||..++....++..+..-...+.+.++.+......+.... ......++..+..+...|......+...+
T Consensus 293 e~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R 369 (557)
T COG0497 293 EFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIR 369 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457766666666666666666666666666666655554321 11234455666666666665555554433
No 65
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.74 E-value=3.7e+02 Score=27.37 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=50.2
Q ss_pred HHHHHHHHH-HHHHHHHhHHhHHH--HHHHHHhHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhhHHHHHhchhh
Q psy6936 585 VEYWERLTG-KAKGRKQKLDESYY--LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDS 661 (1032)
Q Consensus 585 ~~~w~~l~~-~~~~r~~~L~~~~~--~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~ 661 (1032)
..-|+.+.. .......+++.-++ +..+...-..+-.|+...+-+ ...++......|+.++.+|+.+..+.....-.
T Consensus 25 ~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~Rk~IE~~MErFK~vEkesKtKafS 103 (233)
T PF04065_consen 25 DEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLENRKLIEEQMERFKVVEKESKTKAFS 103 (233)
T ss_pred HHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 334544443 23345566666664 345555556688899775544 22344555678889999999999999887655
Q ss_pred HHHH
Q psy6936 662 FRGT 665 (1032)
Q Consensus 662 ~~~l 665 (1032)
-..|
T Consensus 104 keGL 107 (233)
T PF04065_consen 104 KEGL 107 (233)
T ss_pred hhhh
Confidence 4443
No 66
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=42.09 E-value=4.5e+02 Score=27.93 Aligned_cols=252 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHhccCCCCChhhHHHHHHhh----
Q psy6936 14 TANDIQERREQVLNRYADFKSEARSKREKLEDS-RRFQYFKRDADELESWIYEKLQAASDESYKETTNLQAKIQKH---- 88 (1032)
Q Consensus 14 ~~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~-~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~~~~~~~l~~~---- 88 (1032)
|...|...+..+..........+.+....|+.- ..-..|...... .|-......+..+...++...+.-+..-
T Consensus 23 g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~--~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD 100 (296)
T PF13949_consen 23 GIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGE--RWTRPPSSELNASLRKELQKYREYLEQASESD 100 (296)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT--TCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHH
Q psy6936 89 QAFEAEVAAHSNAIVVLDNTGKEMIN----QNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEV 164 (1032)
Q Consensus 89 ~~l~~el~~~~~~v~~l~~~~~~L~~----~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~ 164 (1032)
..+..-+..+.+.|..|...-..|.. ......+.....+..|......+..+..+|...+...-...+ .+.+..+
T Consensus 101 ~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~~~~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~~~~-~d~i~~~ 179 (296)
T PF13949_consen 101 SQLRSKLESIEENLELLSGPIEELEASLPSSSPSDSPQVSEVIRQLRELLNKLEELKKEREELLEQLKEKLQ-NDDISKL 179 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---SSGSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHH
Q ss_pred HHhHHhhhhhhcccccCCCHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Q psy6936 165 MFWINDKEAFVTADEFGADLEHVEVLQRKFDE----FQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAW 240 (1032)
Q Consensus 165 ~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~----l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw 240 (1032)
...+...-. .....-....+++|.. +...+......+..|......+.......... .....+-..+
T Consensus 180 l~~~~~~~~-------~~~~~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~--~~r~~~~~~l 250 (296)
T PF13949_consen 180 LSELNKNGS-------ADFEALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQ--KERESALQRL 250 (296)
T ss_dssp HHHHHHSSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHH--HHHHHHHHHH
T ss_pred HHHhhccCC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH--HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh-HHHHHHHHhHHHHHHHHHHH
Q psy6936 241 MRLKQLALMRQEKLFGA-HEIQRFNRDADETVAWIAEK 277 (1032)
Q Consensus 241 ~~l~~~~~~r~~~Le~~-~~~~~f~~~~~~~~~Wl~~~ 277 (1032)
..-.....+-...|... ..+..|...+..+..=+...
T Consensus 251 ~~a~~~y~el~~~l~eG~~FY~~L~~~~~~l~~~~~~f 288 (296)
T PF13949_consen 251 EAAYDAYKELSSNLEEGLKFYNDLLEILNKLQQKVEDF 288 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.37 E-value=2.6e+02 Score=25.01 Aligned_cols=79 Identities=23% Similarity=0.257 Sum_probs=52.2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------c------CCCCchHHHHHHHHHHHHHHHHHH
Q psy6936 179 EFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVL-------E------GHPERETIVRRKEELSEAWMRLKQ 245 (1032)
Q Consensus 179 ~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~-------~------~~~~~~~i~~~~~~l~~rw~~l~~ 245 (1032)
..|+++..++.+...++.+..++...+..+..+...-+.+.. . .....+.++..+.+++.||+.+..
T Consensus 10 ~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 10 SGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666777766666666666544443321 1 112346788889999999999999
Q ss_pred HHHHHHHHHHhh
Q psy6936 246 LALMRQEKLFGA 257 (1032)
Q Consensus 246 ~~~~r~~~Le~~ 257 (1032)
.+.++....+..
T Consensus 90 llGEK~E~veEL 101 (120)
T PF12325_consen 90 LLGEKSEEVEEL 101 (120)
T ss_pred HhcchHHHHHHH
Confidence 998888777765
No 68
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.72 E-value=6.9e+02 Score=29.65 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----c--CCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 181 GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVL----E--GHPERETIVRRKEELSEAWMRLKQLALM 249 (1032)
Q Consensus 181 ~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~----~--~~~~~~~i~~~~~~l~~rw~~l~~~~~~ 249 (1032)
..||+.+.....++..+..-...+...++.+....+.+.. . .......++..+..+...+..+...+..
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456555555555544444444444444444444444321 1 1112345555555555555555544443
No 69
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.56 E-value=7.2e+02 Score=29.54 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q psy6936 504 SVEALIKKHEDFEKSLAAQEEKIKALDEFATKLI 537 (1032)
Q Consensus 504 ~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~ 537 (1032)
++.+.+...+.++.+++...+.++.-......++
T Consensus 506 eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 506 EIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4566677777788888888888777777777765
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=39.18 E-value=7.4e+02 Score=29.59 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 292 SVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHS---DHGDQIQAKRAEIVEYWERLTGKAKGRKQ 358 (1032)
Q Consensus 292 ~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~---~~~~~i~~~~~~l~~~w~~l~~~~~~r~~ 358 (1032)
.+...+.+-+.|...+...+..+..|....-.|..... .-...+..++..+...|..+...+..+..
T Consensus 154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~q 223 (617)
T PF15070_consen 154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQ 223 (617)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44445555666666677777777766665544432211 12346778888888888888888776644
No 71
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.30 E-value=5.5e+02 Score=27.83 Aligned_cols=82 Identities=23% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHH
Q psy6936 118 FASEVIRKRLEELHRLWELLLSKLAEKGMKLQQAL-VLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDE 196 (1032)
Q Consensus 118 ~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l-~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~ 196 (1032)
.....++..+..+..........+.+....+.... ...........+..-|.+++..+... -+.+..++.....+++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~-r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC-RGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 34455666666666666655555555555555443 23344455566666777777665432 23455666666666666
Q ss_pred HHHH
Q psy6936 197 FQKD 200 (1032)
Q Consensus 197 l~~~ 200 (1032)
|+.-
T Consensus 288 Le~~ 291 (325)
T PF08317_consen 288 LEKL 291 (325)
T ss_pred HHHH
Confidence 6553
No 72
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=37.26 E-value=2.3e+02 Score=34.79 Aligned_cols=28 Identities=14% Similarity=0.374 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 16 NDIQERREQVLNRYADFKSEARSKREKL 43 (1032)
Q Consensus 16 ~~i~~~l~~l~~r~~~l~~~~~~r~~~L 43 (1032)
..+...+......+..+...+......|
T Consensus 124 ~~le~el~~~~e~~~~~k~~le~~~~~L 151 (722)
T PF05557_consen 124 EELEEELEEAEEELEQLKRKLEEEKRRL 151 (722)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666665555555
No 73
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=37.15 E-value=5.8e+02 Score=27.75 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=19.9
Q ss_pred HhHHhhhhhhcccccCCCHHHHHHHHHHHHH
Q psy6936 166 FWINDKEAFVTADEFGADLEHVEVLQRKFDE 196 (1032)
Q Consensus 166 ~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~ 196 (1032)
.|.+.....+. .....++..++..+.+-+.
T Consensus 2 ~W~~k~~~~l~-~~~k~~L~~l~~Ll~e~e~ 31 (335)
T PF08429_consen 2 TWAEKVKEALE-ESPKPSLKELRSLLSEGEK 31 (335)
T ss_pred hhHHHHHHHHh-cCCCCCHHHHHHHHHHHHh
Confidence 58888887776 3335567777777766554
No 74
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=37.09 E-value=5.4e+02 Score=27.35 Aligned_cols=29 Identities=10% Similarity=0.286 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 440 DIREKLRNLENDKTHLLTLWEERRILYEQ 468 (1032)
Q Consensus 440 ~i~~~l~~l~~~w~~l~~~~~~r~~~L~~ 468 (1032)
.+...+..+..+|..+...+.+.+..|..
T Consensus 273 ~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 273 QLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888999888888888877754
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=36.84 E-value=4.8e+02 Score=26.67 Aligned_cols=120 Identities=13% Similarity=0.194 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHH
Q psy6936 228 TIVRRKEELSEAWMRLKQLALMRQEKLFGA-HEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERD 306 (1032)
Q Consensus 228 ~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~-~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~e 306 (1032)
.+...+..+......+...+......++.. .++.++..++.++..-+...+..+.. .++... +..|..+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~---v~~~~e-------~~aL~~E 97 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA---VKDERE-------LRALNIE 97 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHH-------HHHHHHH
Confidence 455667777777777888888888888887 67888999999999999998888832 244444 4444445
Q ss_pred HHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 307 LAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLD 361 (1032)
Q Consensus 307 i~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~ 361 (1032)
+...+....++.+....|... ...+...+..+..+..++...+.+-...++
T Consensus 98 ~~~ak~r~~~le~el~~l~~~----~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e 148 (239)
T COG1579 98 IQIAKERINSLEDELAELMEE----IEKLEKEIEDLKERLERLEKNLAEAEARLE 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444444444333321 122344444444444444444443333333
No 76
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=35.71 E-value=2.3e+02 Score=34.80 Aligned_cols=90 Identities=14% Similarity=0.172 Sum_probs=38.3
Q ss_pred cCCCHHHHHH--HHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 286 YGRDLASVQT--LQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDH-GDQIQAKRAEIVEYWERLTGKAKGRKQKLDE 362 (1032)
Q Consensus 286 ~~~d~~~~~~--~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~-~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~ 362 (1032)
+..+|...-. ....+..|+.+.......+..+...+..-....|.. .......+..|... ...+..|..+|..
T Consensus 552 lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~----~~~~ekr~~RLke 627 (722)
T PF05557_consen 552 LRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAE----LASAEKRNQRLKE 627 (722)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHH----HHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3344544333 234566677776666665554432222211111211 11112223333332 2233455566666
Q ss_pred HHH--HHHHHHHHHHHHHH
Q psy6936 363 SYY--LHRFLADYRDLISW 379 (1032)
Q Consensus 363 ~~~--~~~f~~~~~~l~~W 379 (1032)
+.. ...|...|-.+.+|
T Consensus 628 vf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 628 VFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp HHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 553 35677777777766
No 77
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=34.46 E-value=1.2e+03 Score=30.65 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy6936 908 IRQRMEQIVHLWESLATATE 927 (1032)
Q Consensus 908 i~~~l~~l~~~w~~l~~~~~ 927 (1032)
+..+.++|......|...+.
T Consensus 998 l~~q~~dL~~~~~~L~~~i~ 1017 (1179)
T TIGR02168 998 LKERYDFLTAQKEDLTEAKE 1017 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 78
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.94 E-value=1.8e+02 Score=25.34 Aligned_cols=62 Identities=18% Similarity=0.261 Sum_probs=45.7
Q ss_pred HHhhchHHHHHhHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6936 941 GFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLE 1005 (1032)
Q Consensus 941 ~~~~~~~~l~~wL~~~e~~L~~~~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~ 1005 (1032)
.....+.....-|+.+|..+.+.+...|...++ -....+..++....+.++.+..+.+-|++
T Consensus 39 ~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~---l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 39 KLEERLDEHDRRLQALETKLEHLPTRDDVHDLQ---LELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888888888855555555554 56668889999999999999888887775
No 79
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=33.88 E-value=6.5e+02 Score=27.36 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhch
Q psy6936 610 RFLADYRDLISWVSDMKAIISA 631 (1032)
Q Consensus 610 ~f~~~~~~l~~Wl~~~e~~l~~ 631 (1032)
.+...+.....|+..+...+..
T Consensus 305 ~Le~~~~~~~~W~~~~~k~F~k 326 (335)
T PF08429_consen 305 DLEKQLKRAEDWMEKAKKLFLK 326 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677777888887766653
No 80
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=33.88 E-value=10 Score=47.12 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 906 DKIRQRMEQIVHLWESLATATEKK 929 (1032)
Q Consensus 906 ~~i~~~l~~l~~~w~~l~~~~~~~ 929 (1032)
..+...+.+|+.+-.++...+...
T Consensus 717 ~~LE~q~keLq~rl~e~E~~~~~~ 740 (859)
T PF01576_consen 717 KALERQVKELQARLEEAEQSALKG 740 (859)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 566666777777777666655544
No 81
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=33.41 E-value=7.5e+02 Score=27.92 Aligned_cols=367 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh-HHHH
Q psy6936 184 LEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQ-LALMRQEKLFGA-HEIQ 261 (1032)
Q Consensus 184 ~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~-~~~~r~~~Le~~-~~~~ 261 (1032)
...++.-+.....+..+ -+.+...+...+...-+....+.-....+..++.-|.. ........-+.. ..+.
T Consensus 4 ~~~Ak~sL~~a~~vc~~-------An~~~~~ar~~l~~~~~~~~k~~fl~~~l~~Q~~~L~~~~~~~~~~~~~~~~~~f~ 76 (412)
T PF04108_consen 4 LLAAKRSLSSAQHVCRE-------ANEILTSARQSLEESVPLSAKTGFLRRGLKQQLKLLYKKVRSSLLIVYEWGQRDFK 76 (412)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhH--HHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHH
Q psy6936 262 RFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGV--ERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKR 339 (1032)
Q Consensus 262 ~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l--~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 339 (1032)
.+...++....-|..+...|....+......-...-..+-.| ...|...+..+....... ..++..+
T Consensus 77 ~l~~~ld~~~~~L~~~l~~Lr~t~v~~~~~~~~~~~ktL~DFVd~~~v~~L~~~l~~~i~~~-----------~~~~~~~ 145 (412)
T PF04108_consen 77 DLVKELDPADARLEQTLDMLRNTKVPPFFRPPGEEPKTLYDFVDEDSVEILRENLKISIDEL-----------QAIQEQL 145 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcCCccccCCCCCCCcHHHhcCHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--HHHHHHHHHHHHhhHhHHHH
Q psy6936 340 AEIVEYWERLTGKAKGRK--QKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKD--VAGAEALLERHQEHKGEIDA 415 (1032)
Q Consensus 340 ~~l~~~w~~l~~~~~~r~--~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d--~~~~~~~l~~~~~l~~~l~~ 415 (1032)
+....+++.....+.... ..+...-....|... -..+.+.. .......+.....+..++.+
T Consensus 146 d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~i~~~l~~le~ema~ 210 (412)
T PF04108_consen 146 DNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSS---------------LGSSPSSSSSNPLMSTILKELHSLEQEMAS 210 (412)
T ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccc---------------cCCCCCcccccccHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHhhhhhhh----cCCC-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q psy6936 416 REDSFRGTADAGQSLLD----RNHY-------------AADDIREKLRNLENDKTHLLTLWEERRILYEQCM-DLQLFYR 477 (1032)
Q Consensus 416 ~~~~~~~l~~~~~~L~~----~~~~-------------~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~-~~~~f~~ 477 (1032)
+-..+..--+.|...+. ...+ ++.++.+-+.+|+.++..+......-+..|.... .....+.
T Consensus 211 lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~ 290 (412)
T PF04108_consen 211 LLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYN 290 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHH
Q psy6936 478 DTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKR 557 (1032)
Q Consensus 478 ~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r 557 (1032)
.+..+..-+......+ +.-+......-.....+...+..+-..+..+...+..+...
T Consensus 291 ~~~~~~~~l~~~~~~l-----~~yl~~~~~~~~~~~~~~~~i~~~~~~l~~L~~~Y~~F~~a------------------ 347 (412)
T PF04108_consen 291 ALSEALEELRKFGERL-----PSYLAAFHDFEERWEEEKESIQAYIDELEQLCEFYEGFLSA------------------ 347 (412)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHhHHhHHH--HHHHHHhHHHHH
Q psy6936 558 RAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYY--LHRFLADYRDLI 619 (1032)
Q Consensus 558 ~~~l~~~~~~r~~~L~~~~~~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~--~~~f~~~~~~l~ 619 (1032)
|+.+..-+.+|+ ........+...+.+....+.+.-. ...|...+.++.
T Consensus 348 Y~~LL~Ev~RRr-------------~~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~GdyL 398 (412)
T PF04108_consen 348 YDSLLLEVERRR-------------AVRDKMKKIIREANEELDKLREEEQRRREAFLKEYGDYL 398 (412)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcC
No 82
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.85 E-value=9.1e+02 Score=28.45 Aligned_cols=105 Identities=10% Similarity=0.258 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHh
Q psy6936 231 RRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL 310 (1032)
Q Consensus 231 ~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~ 310 (1032)
...+.++..|......+..|...|...-.+..|...++.+.. .++ .++..+....++++.+..++...
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~-----------~~i-k~p~~i~~~~~e~d~lk~e~~~~ 231 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK-----------KDI-KNPLELQKIKEEFDKLKKEGKAD 231 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh-----------ccC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777654556667777666543 122 55667777777777777777666
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 311 EDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLD 361 (1032)
Q Consensus 311 ~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~ 361 (1032)
...+..+... +....+.+...+..|..+-..=-.+|.
T Consensus 232 ~~~i~~~~~~--------------l~~~~~~~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 232 KQKIKSAKND--------------LQNDKKQLKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred HHHHHHHHHH--------------HHHhHHHHHHHHHHHHhccHhHHHHHH
Confidence 6655554433 333344444444444444444444444
No 83
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.43 E-value=5.1e+02 Score=25.43 Aligned_cols=59 Identities=14% Similarity=0.241 Sum_probs=39.5
Q ss_pred hchHHHHHhHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6936 944 RTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLE 1005 (1032)
Q Consensus 944 ~~~~~l~~wL~~~e~~L~~~~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~~~l~~ 1005 (1032)
..++.++.-+.+.--.|+. .-+...+..+-.++..++.+|...-..++.-+..++.|+.
T Consensus 140 ~km~PVL~~~~D~vL~LKH---NLNA~AI~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~ 198 (201)
T PF11172_consen 140 SKMQPVLAAFRDQVLYLKH---NLNAQAIASLQGEFSSIESDISQLIKEMERSIAEADAFIA 198 (201)
T ss_pred HhcChHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455444444444432 2344556666778888999999998899888888888874
No 84
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=30.92 E-value=6.9e+02 Score=26.77 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=23.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q psy6936 90 AFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELL 137 (1032)
Q Consensus 90 ~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L 137 (1032)
.+..+|......|+.+...-..+.. ....+...+..+..+|+..
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~----e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLEL----EIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhh----hhhhHHHHHHHHHHHHHHH
Confidence 3455666666666665554444422 2334555666666666654
No 85
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=29.15 E-value=6.4e+02 Score=25.81 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhc
Q psy6936 123 IRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVT 176 (1032)
Q Consensus 123 i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~ 176 (1032)
++..+.....+...+...+..-...+. .+...+..+..-|...+..+.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~------~aE~e~~~l~rri~~lE~~le 53 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAE------KAEAEVASLQRRIQLLEEELE 53 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333333 333444555555555554443
No 86
>KOG0250|consensus
Probab=28.94 E-value=1.3e+03 Score=29.27 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=54.0
Q ss_pred ccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 635 AKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA---ADDIREKLRNLENDKTHLLTLWEERRILYEQC 711 (1032)
Q Consensus 635 ~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~---~~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~ 711 (1032)
..+...++...........+|..+...+..+....+.+.....+. -......+.....+.+.+...+..|...+...
T Consensus 730 ~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~ 809 (1074)
T KOG0250|consen 730 QVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSA 809 (1074)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 345566666777777777777777666666666555554432221 12355555555566666666666666666554
Q ss_pred HHH-HHHhhcHHHHHHHHHHHHhh
Q psy6936 712 MDL-QLFYRDTEQADTWMAKQEAF 734 (1032)
Q Consensus 712 l~~-~~f~~~~~~l~~WL~~~e~~ 734 (1032)
-.. ..|..-++....-+...|..
T Consensus 810 e~~~~HyE~~~K~~l~~l~~~E~~ 833 (1074)
T KOG0250|consen 810 EDEKRHYEDKLKSRLEELKQKEVE 833 (1074)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHH
Confidence 333 23333333233444444433
No 87
>KOG0977|consensus
Probab=28.67 E-value=9.9e+02 Score=27.84 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcC
Q psy6936 979 HALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030 (1032)
Q Consensus 979 ~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~~l~~ 1030 (1032)
.+.|+..+..+...|..++..|..++..-.. -.+++-.++.--..|+.|.+
T Consensus 337 ~r~~e~~L~~kd~~i~~mReec~~l~~Elq~-LlD~ki~Ld~EI~~YRkLLe 387 (546)
T KOG0977|consen 337 QRSFEQALNDKDAEIAKMREECQQLSVELQK-LLDTKISLDAEIAAYRKLLE 387 (546)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hhchHhHHHhHHHHHHHHhc
Confidence 3445555555666666666666555532221 12334444444555555543
No 88
>KOG0035|consensus
Probab=28.09 E-value=1.2e+02 Score=36.96 Aligned_cols=128 Identities=13% Similarity=0.173 Sum_probs=65.6
Q ss_pred HHHHhHHHHHHHHHHHHHHhchh-hhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHHHHH
Q psy6936 610 RFLADYRDLISWVSDMKAIISAD-ELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLR 688 (1032)
Q Consensus 610 ~f~~~~~~l~~Wl~~~e~~l~~~-~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~ 688 (1032)
.|-.....-..|...-+..+... ....-...+.+....|.++...+..+...+..+...+..|....-.++..+-....
T Consensus 398 ~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~~~~~~~a~~~q 477 (890)
T KOG0035|consen 398 KFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLYDDAKLVAADCQ 477 (890)
T ss_pred hccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 34444444444544433333221 11222345555556666666666666666676666666665443333444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhcHHHHHHHHHHHHhhhcC
Q psy6936 689 NLENDKTHLLTLWEERRILYEQCMDL--------QLFYRDTEQADTWMAKQEAFLSN 737 (1032)
Q Consensus 689 ~l~~~w~~l~~~~~~r~~~Le~~l~~--------~~f~~~~~~l~~WL~~~e~~L~~ 737 (1032)
.+.+.|..+......|.-.|..+... -.|..-..-+..||.-+-..+..
T Consensus 478 ~i~dq~~~~~~ls~~r~pal~~~~~~~dk~~~~~le~a~Raa~~~~~l~~~~~d~~d 534 (890)
T KOG0035|consen 478 HICDQWDDLGQLSRKRRPALMQMEKVLDKLAVLTLEFAKRAAPFNNWLKGVQEDLQD 534 (890)
T ss_pred hccccccccchhhhhhchhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Confidence 56666666555554455445444321 23333444567888875444433
No 89
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=26.87 E-value=3.4e+02 Score=21.90 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=38.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 302 GVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQK 359 (1032)
Q Consensus 302 ~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~ 359 (1032)
.+..+|.....++.+|......+....| +...+..+++.+..+...|...+..-...
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~~-~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNLP-DVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777655443 45668888887777777777665554433
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.31 E-value=5.3e+02 Score=23.96 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCCChhhHHHHHHhhHHHHHH
Q psy6936 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYKETTNLQAKIQKHQAFEAE 94 (1032)
Q Consensus 15 ~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~e 94 (1032)
+..+..++..+..+...+...+.+...+...+ ...++.+..-|......+.... .....+...-.+++.|..+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~l------E~eld~~~~~l~~~k~~lee~~-~~~~~~E~l~rriq~LEee 88 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQL------EEELDKLEEQLKEAKEKLEESE-KRKSNAEQLNRRIQLLEEE 88 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHH-HHHHhHHHHHhhHHHHHHH
Confidence 44444555555555555544444444444433 3344444444444333332211 1122233555566667777
Q ss_pred HHhhHHHHHHHHHHHHH
Q psy6936 95 VAAHSNAIVVLDNTGKE 111 (1032)
Q Consensus 95 l~~~~~~v~~l~~~~~~ 111 (1032)
+......+.........
T Consensus 89 le~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 89 LEEAEKKLKETTEKLRE 105 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77766666655554433
No 91
>PRK10869 recombination and repair protein; Provisional
Probab=25.92 E-value=1.1e+03 Score=27.70 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy6936 181 GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKL 218 (1032)
Q Consensus 181 ~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l 218 (1032)
..||+.++....++..+..=...+.+.++.+....+.+
T Consensus 292 ~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l 329 (553)
T PRK10869 292 DLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQL 329 (553)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45565555444444444443344444555555555544
No 92
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.28 E-value=4.8e+02 Score=23.07 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHhcC
Q psy6936 979 HALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030 (1032)
Q Consensus 979 ~~~l~~ei~~~~~~v~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~r~~~l~~ 1030 (1032)
+......+...-..+..+..-+..++..|.| ..+-.....+..|+..+..
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l~~~~~--~e~L~~~~~i~~rl~~l~~ 126 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEALNSGDP--TELLLSKKLIIERLQNLLK 126 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHhh
Confidence 3344444444555556666666666765554 5666666777788777654
No 93
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.89 E-value=1.2e+03 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy6936 125 KRLEELHRLWELLLSKLAEKGMKLQQA 151 (1032)
Q Consensus 125 ~~l~~L~~~w~~L~~~~~~r~~~L~~~ 151 (1032)
..+...-..|..+.+.+..+...-.+.
T Consensus 157 ~~~~~~y~~w~~~~~~l~~~~~~~~e~ 183 (557)
T COG0497 157 EAYQEAYQAWKQARRELEDLQEKERER 183 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777778877777766665544433
No 94
>KOG0972|consensus
Probab=24.60 E-value=8e+02 Score=25.45 Aligned_cols=46 Identities=4% Similarity=0.198 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHHHHHHHHhccCCC---CChhhHHHHHHhhHHHHHHHHh
Q psy6936 52 FKRDADELESWIYEKLQAASDESY---KETTNLQAKIQKHQAFEAEVAA 97 (1032)
Q Consensus 52 f~~~~~~~~~Wl~~~~~~l~~~~~---~~~~~~~~~l~~~~~l~~el~~ 97 (1032)
..........|--+.++.+-+--. .|....+-.+.++..+...|.+
T Consensus 193 vl~s~tDa~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~ 241 (384)
T KOG0972|consen 193 VLQSNTDAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQ 241 (384)
T ss_pred HHhhcchHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHH
Confidence 334445566677776665543211 4555556556555555554443
No 95
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=24.51 E-value=7.7e+02 Score=25.21 Aligned_cols=30 Identities=7% Similarity=0.291 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 17 DIQERREQVLNRYADFKSEARSKREKLEDS 46 (1032)
Q Consensus 17 ~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~ 46 (1032)
.+...+.....++..+...+.....++..+
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~a 34 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKA 34 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666655555555443
No 96
>PRK01156 chromosome segregation protein; Provisional
Probab=24.49 E-value=1.5e+03 Score=28.66 Aligned_cols=17 Identities=24% Similarity=0.137 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy6936 509 IKKHEDFEKSLAAQEEK 525 (1032)
Q Consensus 509 l~~~~~l~~el~~~~~~ 525 (1032)
...++.+..++......
T Consensus 521 ~~~~~~l~~~l~~~~~~ 537 (895)
T PRK01156 521 YNKIESARADLEDIKIK 537 (895)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 97
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.34 E-value=4.7e+02 Score=22.68 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=48.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6936 179 EFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFG 256 (1032)
Q Consensus 179 ~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~ 256 (1032)
..+.+++.+-..-.+...+..+++..+..-+.++.....+...+ ++...+...+..+...-..+...+..-...+..
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777777777776666665555554444 456667777777777766666666655555443
No 98
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.22 E-value=8.2e+02 Score=25.04 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHhhh
Q psy6936 683 IREKLRNLENDKTHLLTLWEERRILYEQCMDL-QLFYRDTEQADTWMAKQEAFL 735 (1032)
Q Consensus 683 i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~-~~f~~~~~~l~~WL~~~e~~L 735 (1032)
++..|..+......+...+......++..-.. ..+..++..+..=+...+..+
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555554443 555666666666666666665
No 99
>PRK11637 AmiB activator; Provisional
Probab=23.08 E-value=1.1e+03 Score=26.63 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHhHHHHHhHHhhhhhh
Q psy6936 121 EVIRKRLEELHRLWELLLSKLAEKGMKLQQAL-VLVQFIRQCDEVMFWINDKEAFV 175 (1032)
Q Consensus 121 ~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l-~~~~f~~~~~~~~~wl~~~e~~l 175 (1032)
..++.++..+...-..+...+..-...+.... .+......+..+..-|...+..+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i 98 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTL 98 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666666665544444433 22333344444444444444333
No 100
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=22.78 E-value=7e+02 Score=24.11 Aligned_cols=124 Identities=16% Similarity=0.066 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhccC-CC--CChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy6936 56 ADELESWIYEKLQAASDE-SY--KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHR 132 (1032)
Q Consensus 56 ~~~~~~Wl~~~~~~l~~~-~~--~~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~ 132 (1032)
++.++..|..-+..|-.. .. +++..+-..+...+.....+.+.+..|..+.....+|...-+|... .
T Consensus 7 l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLDP~~~--e-------- 76 (174)
T PF07426_consen 7 LDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYLDPNFI--E-------- 76 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcCchhh--h--------
Confidence 334444455544444221 11 2344555566666666677777888888888887777553333210 0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHH
Q psy6936 133 LWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDE 196 (1032)
Q Consensus 133 ~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~ 196 (1032)
...--...+++-.+....+.........-+...+..+++..+ .++......+..+..
T Consensus 77 ------~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i-~~vp~~~~kL~~L~~ 133 (174)
T PF07426_consen 77 ------EIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLEPVLDSESI-RNVPELCDKLQKLSQ 133 (174)
T ss_pred ------hcccchHHHHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHH-hhhHHHHHHHHHHHH
Confidence 000000112333334445555566666677777777766543 233333334443333
No 101
>KOG3809|consensus
Probab=21.99 E-value=1.1e+03 Score=26.09 Aligned_cols=122 Identities=19% Similarity=0.296 Sum_probs=72.2
Q ss_pred HHHHHHHHhchHhHHHHHHHHHHHHHhCC----CCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6936 874 QNFEQELNANKTRMDEITSTGQELLEANH----YAS------DKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFN 943 (1032)
Q Consensus 874 ~~l~~el~~~~~~~~~v~~~g~~l~~~~~----~~~------~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~~~~~~ 943 (1032)
-+...++..+-..|..|...-..|-..+. +.+ ..=++++..|+.....|+..+.=-...+. +.. ..|.
T Consensus 433 ~~ee~~ldaqG~LVqkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D-~i~-eD~d 510 (583)
T KOG3809|consen 433 VDEEDRLDAQGALVQKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFD-FIN-EDID 510 (583)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHh-hhh-hhHH
Confidence 34455566666677777777777766542 111 33345777777777777766654433322 221 4566
Q ss_pred hchHHHHHhHHHH---HhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 944 RTIEDIELWLSEI---EGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKA 998 (1032)
Q Consensus 944 ~~~~~l~~wL~~~---e~~L~~~~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~ 998 (1032)
....+|..|=++. +..|+... ..+....+-+...+..|+.+|..++..|...+.
T Consensus 511 aMq~EL~mWrse~rq~~~elq~eq-~~t~~a~epL~~~la~lq~~I~d~~e~i~~~r~ 567 (583)
T KOG3809|consen 511 AMQKELEMWRSEQRQNEQELQNEQ-AATFGASEPLYNILANLQKEINDTKEEISKARG 567 (583)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhh-hcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888898763 33344322 112223445556777888999999888876554
No 102
>KOG0995|consensus
Probab=21.86 E-value=1.3e+03 Score=26.84 Aligned_cols=365 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhch--hhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHH
Q psy6936 608 LHRFLADYRDLISWVSDMKAIISA--DELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIRE 685 (1032)
Q Consensus 608 ~~~f~~~~~~l~~Wl~~~e~~l~~--~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~ 685 (1032)
+..|...-.+...-..+....+.. ..+..+.+.++.....+.+...++..-......+... ...++.
T Consensus 205 Y~~fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~-----------~~~L~~ 273 (581)
T KOG0995|consen 205 YTSFLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREK-----------KARLQD 273 (581)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHH-----------HHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHH
Q psy6936 686 KLRNLENDKTHLLTLWEERRILYEQCMDL-QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQ 764 (1032)
Q Consensus 686 ~l~~l~~~w~~l~~~~~~r~~~Le~~l~~-~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 764 (1032)
.+.........+.+.-..+-+.|+....- ..-...++.+..-....-..+....+ +...++.+-.....+..++...
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~i--S~~dve~mn~Er~~l~r~l~~i 351 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGI--SGEDVERMNLERNKLKRELNKI 351 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhH-Hhhhhh
Q psy6936 765 EEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAI-LEDSYKFQQ-FERDCD 842 (1032)
Q Consensus 765 ~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~-Le~~~~~~~-f~~~~~ 842 (1032)
+..++.+ .+..-.+-.. ++....++...+..+...+..-... ++.+..+.. ......
T Consensus 352 ~~~~d~l--------------~k~vw~~~l~-------~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~ 410 (581)
T KOG0995|consen 352 QSELDRL--------------SKEVWELKLE-------IEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAAT 410 (581)
T ss_pred HHHHHHH--------------HHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcc
Q ss_pred HHHHHHHhhhhhccccCCCCcchhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q psy6936 843 ETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESL 922 (1032)
Q Consensus 843 ~l~~Wl~~~~~~l~~~~~~~~~~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l 922 (1032)
...+.-....+.++.....-...+.....+...++..+....+.+....+.-..+... -..+......++.-=.+.
T Consensus 411 ~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~e----l~~~~~~~~~~k~e~eee 486 (581)
T KOG0995|consen 411 NGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELE----LKKAESKYELKKEEAEEE 486 (581)
T ss_pred ccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-HH-HHHhhchHHHHHhHHHHHhhhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 923 ATATEKKGNKLQEAS-QQ-QGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAAT 1000 (1032)
Q Consensus 923 ~~~~~~~~~~L~~a~-~~-~~~~~~~~~l~~wL~~~e~~L~~~~~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~~ 1000 (1032)
...|......|+..+ .. .-....+.....-+..++..+.. -....+.+.......|..+...+
T Consensus 487 ~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~---------------~~~~~~eer~ki~~ql~~~i~~i 551 (581)
T KOG0995|consen 487 WKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDR---------------MVATGEEERQKIAKQLFAVIDQI 551 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHHHHhcCCC
Q psy6936 1001 EQFLERGHFDADNIKAKQAAMCERYENLQRPI 1032 (1032)
Q Consensus 1001 ~~l~~~~~~~~~~i~~~~~~l~~r~~~l~~~~ 1032 (1032)
..+. ..|++.++.+..-|..-++.|
T Consensus 552 ~~~k-------~~iqs~le~~k~~~~~~~~ei 576 (581)
T KOG0995|consen 552 SDFK-------VSIQSSLENLKADLHKECEEI 576 (581)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHH
No 103
>KOG0978|consensus
Probab=20.99 E-value=1.5e+03 Score=27.31 Aligned_cols=644 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHh
Q psy6936 82 QAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQC 161 (1032)
Q Consensus 82 ~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~ 161 (1032)
...-..+..=...+..-...++.+...+..+..+.......+...-..|...|..|...+. .++..+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~~D~lq~~~e~~~~~~~~~~e~l~~~~~~L~~e~e~Lq~~~~-------------~~~~~~ 71 (698)
T KOG0978|consen 5 EPLAGRIKSEKEAVSLVLIQIDDLQTQAEELARRLNRVEEALTVLFDELAEENEKLQNLAD-------------HLQEKH 71 (698)
T ss_pred hhhHHHHHhhhhhhcccchhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHH
Q ss_pred HHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-------CCCCchHHHHHHH
Q psy6936 162 DEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLE-------GHPERETIVRRKE 234 (1032)
Q Consensus 162 ~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~-------~~~~~~~i~~~~~ 234 (1032)
..+..|+......+... -..+...+.++.....-...+......++...+.+-.=... .++..+.-...+.
T Consensus 72 ~~~~~~~~el~~k~s~~--~~~~~e~~~~le~~~~d~eki~~~~~~l~~~la~~~~~~~t~~~~~~~~~~~~t~~~t~~~ 149 (698)
T KOG0978|consen 72 ATLSEQISELLDKISTA--ETEVDELEQQLEDLQADLEKIRRRSNKLNKHLAEALEHLNTYGNGNGSLSGTITVNSTELE 149 (698)
T ss_pred HHHHHHHHHHHHHHHHH--hccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccCcccccchhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHH
Q psy6936 235 ELSEAWMRLKQLALMRQEKLFGA-HEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDK 313 (1032)
Q Consensus 235 ~l~~rw~~l~~~~~~r~~~Le~~-~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~ 313 (1032)
.++.-...+......|-..|+.. ...-.....++.+..-+..+........+-..--...+.+.....--.++....+
T Consensus 150 ~l~~~iee~~~~~~~~~~ele~lq~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~NE~l~~~~~~~~e~~~~~~- 228 (698)
T KOG0978|consen 150 ELRDEIEELRELASTRMEELEKLQLYSDEILRQLDRFRVELRSLKEKVRSETFELRCLQYNEELQRKTMESDEAINSKK- 228 (698)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhcccccchhhhhhccch-
Q ss_pred HHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccc--
Q psy6936 314 VSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY-LHRFLADYRDLISWVSDMKAIISAD-- 390 (1032)
Q Consensus 314 l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~-~~~f~~~~~~l~~Wl~~~e~~l~~~-- 390 (1032)
+..+.+.+.........-............. ...++..+..-...+.+... +..+...+.+...-.........+.
T Consensus 229 ~~~lee~~~~~~~e~~~l~~~~e~~~~~~~~-~~~in~e~~~L~Ssl~e~~~~l~~~~~~~k~t~~~~~~lr~~~~s~~~ 307 (698)
T KOG0978|consen 229 VIKLEEKLAQCVKEYEMLRKEFENNKSQNDL-FSSINREMRHLISSLQEHEKLLKEYERELKDTESDNLKLRKQHSSAAD 307 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHh
Q ss_pred cccCCHHHHHHHHHHHHhhHhHHHHhh-hhHHHHHHhhhhhhhcCC---------CChHHHHHHHHH-HHHHHHHHHHHH
Q psy6936 391 ELAKDVAGAEALLERHQEHKGEIDARE-DSFRGTADAGQSLLDRNH---------YAADDIREKLRN-LENDKTHLLTLW 459 (1032)
Q Consensus 391 ~~~~d~~~~~~~l~~~~~l~~~l~~~~-~~~~~l~~~~~~L~~~~~---------~~~~~i~~~l~~-l~~~w~~l~~~~ 459 (1032)
..|......+..+.+...+..++.... .....+......+....+ -+...+.+.+.. +.-+.+.+....
T Consensus 308 ~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~di~~~k~el~~~~~~~le~~k~~~ 387 (698)
T KOG0978|consen 308 SLESKSRDLESLLDKIQDLISQEAELSKKLRSKLLESAKKLKILLREKDRESQKERDILVAKSELLKTNELRLEMLKSLL 387 (698)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc
Q psy6936 460 EERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEG 539 (1032)
Q Consensus 460 ~~r~~~L~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~ 539 (1032)
.+...+++ ..........++.+..|-...-..+.........-.+.......+.+..-..++......+...|..
T Consensus 388 ke~~~~~~-~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA---- 462 (698)
T KOG0978|consen 388 KEQRDKLQ-VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSA---- 462 (698)
T ss_pred HHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhHHHHH
Q psy6936 540 QHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLI 619 (1032)
Q Consensus 540 ~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~~~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~ 619 (1032)
|...-....
T Consensus 463 -----------------------------------------------------------------------~ed~Qeqn~ 471 (698)
T KOG0978|consen 463 -----------------------------------------------------------------------FEDMQEQNQ 471 (698)
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Q ss_pred HHHHHHHHHhchhhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHHHHHHHHHHHHHHHH
Q psy6936 620 SWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLT 699 (1032)
Q Consensus 620 ~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~ 699 (1032)
.-+.+....-. ....-...-...-+.|+.+..+.......+..+......+... ...++.++..+...-..+..
T Consensus 472 kL~~el~ekdd--~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~----i~~leeq~~~lt~~~~~l~~ 545 (698)
T KOG0978|consen 472 KLLQELREKDD--KNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELK----IGKLEEQERGLTSNESKLIK 545 (698)
T ss_pred HHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHhhhhhHH
Q ss_pred HHHHHHHHHHHHHHH-HHHhhcHHHHHHHHHHHHhhhcCC--cCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhh
Q psy6936 700 LWEERRILYEQCMDL-QLFYRDTEQADTWMAKQEAFLSNE--DLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLK 776 (1032)
Q Consensus 700 ~~~~r~~~Le~~l~~-~~f~~~~~~l~~WL~~~e~~L~~~--~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~ 776 (1032)
....+...++..-.. ......++.+..-++..+..|... .+...-..++..-.+.+.++.++.....++..++..-.
T Consensus 546 el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 546 ELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q ss_pred hhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 777 VNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRR 825 (1032)
Q Consensus 777 ~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~ 825 (1032)
+......+.+-....-.--.+....-+-+=..+..=|+-+|..+...+
T Consensus 626 -~~s~d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r 673 (698)
T KOG0978|consen 626 -GASADEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTR 673 (698)
T ss_pred -cccccHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHH
No 104
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=20.83 E-value=1.3e+03 Score=26.48 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=34.8
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhcHHHHHHHHHHHHhhhc
Q psy6936 683 IREKL-RNLENDKTHLLTLWEERRILYEQCMD---------LQLFYRDTEQADTWMAKQEAFLS 736 (1032)
Q Consensus 683 i~~~l-~~l~~~w~~l~~~~~~r~~~Le~~l~---------~~~f~~~~~~l~~WL~~~e~~L~ 736 (1032)
+...+ +.+..||..|.....+|...|..-.. ...+...|..+..-+..++.++.
T Consensus 219 ~E~~lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~ 282 (531)
T PF15450_consen 219 TERSLREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQ 282 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555 77889999999999998877765543 12344445555555555555543
No 105
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.80 E-value=2e+03 Score=28.60 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhchHHHHHhHHH
Q psy6936 906 DKIRQRMEQIVHLWESLATATEKKGNKLQEAS-Q-QQGFNRTIEDIELWLSE 955 (1032)
Q Consensus 906 ~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~-~-~~~~~~~~~~l~~wL~~ 955 (1032)
..+..+++.+...++++......-...+...- . ...|......+......
T Consensus 982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~~ 1033 (1164)
T TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFNE 1033 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655555544444333 1 24455554444444433
No 106
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.23 E-value=8.6e+02 Score=24.15 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=17.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q psy6936 89 QAFEAEVAAHSNAIVVLDNTGKEMINQN 116 (1032)
Q Consensus 89 ~~l~~el~~~~~~v~~l~~~~~~L~~~~ 116 (1032)
...+.+++..+..++.+...+..++..|
T Consensus 5 ~~~E~~~~~le~~l~kl~K~~~~~~d~g 32 (200)
T cd07637 5 DEVETDVVEIEAKLDKLVKLCSGMIEAG 32 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666543
Done!