Query psy6936
Match_columns 1032
No_of_seqs 201 out of 2070
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 22:33:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3edv_A Spectrin beta chain, br 100.0 1.3E-33 4.4E-38 308.0 45.1 316 151-467 5-322 (323)
2 1u4q_A Spectrin alpha chain, b 100.0 1.3E-32 4.5E-37 300.4 44.8 317 48-364 4-321 (322)
3 1u4q_A Spectrin alpha chain, b 100.0 1.8E-32 6.2E-37 299.3 45.2 317 259-575 4-320 (322)
4 3kbt_A Beta-I spectrin, spectr 100.0 9.3E-33 3.2E-37 302.0 38.1 318 47-365 4-324 (326)
5 1hci_A Alpha-actinin 2; triple 100.0 2.6E-32 9E-37 315.1 40.4 414 154-575 13-471 (476)
6 3edv_A Spectrin beta chain, br 100.0 2.7E-31 9.4E-36 289.6 44.8 314 47-361 6-322 (323)
7 3kbt_A Beta-I spectrin, spectr 100.0 6.8E-32 2.3E-36 295.1 37.2 319 151-470 3-323 (326)
8 1hci_A Alpha-actinin 2; triple 100.0 7.7E-31 2.6E-35 302.8 44.0 419 49-470 13-472 (476)
9 3r6n_A Desmoplakin; spectrin r 100.0 5.2E-28 1.8E-32 264.8 43.7 345 158-520 8-418 (450)
10 3r6n_A Desmoplakin; spectrin r 100.0 2.5E-26 8.4E-31 251.6 41.4 371 54-456 9-446 (450)
11 1sjj_A Actinin; 3-helix bundle 100.0 9.6E-27 3.3E-31 288.4 33.9 447 117-566 208-701 (863)
12 1sjj_A Actinin; 3-helix bundle 100.0 4.2E-26 1.4E-30 282.6 37.9 426 473-934 253-708 (863)
13 1u5p_A Spectrin alpha chain, b 99.9 2.3E-23 7.7E-28 212.1 28.8 211 154-364 5-215 (216)
14 1cun_A Protein (alpha spectrin 99.9 4E-23 1.4E-27 210.1 30.4 211 154-364 2-212 (213)
15 1cun_A Protein (alpha spectrin 99.9 2.5E-22 8.7E-27 204.2 30.5 211 260-470 2-212 (213)
16 3edu_A Beta-I spectrin, spectr 99.9 3E-23 1E-27 210.7 22.6 212 154-366 3-216 (218)
17 1u5p_A Spectrin alpha chain, b 99.9 2.2E-22 7.4E-27 204.9 28.8 212 259-470 4-215 (216)
18 1s35_A Beta-I spectrin, spectr 99.9 1.9E-22 6.3E-27 205.0 27.1 210 367-576 3-213 (214)
19 1s35_A Beta-I spectrin, spectr 99.9 2E-22 6.8E-27 204.8 27.1 210 609-832 3-213 (214)
20 3fb2_A Spectrin alpha chain, b 99.9 2.7E-22 9.4E-27 203.6 24.2 208 604-825 11-218 (218)
21 3fb2_A Spectrin alpha chain, b 99.9 3.6E-22 1.2E-26 202.7 24.8 208 362-569 11-218 (218)
22 3edu_A Beta-I spectrin, spectr 99.9 1.6E-21 5.6E-26 197.9 21.4 212 260-472 3-216 (218)
23 1quu_A Human skeletal muscle a 99.9 5E-20 1.7E-24 191.2 27.8 222 143-366 7-244 (250)
24 1quu_A Human skeletal muscle a 99.9 4.9E-20 1.7E-24 191.2 27.2 220 38-259 7-243 (250)
25 2iak_A Bullous pemphigoid anti 99.8 1.2E-20 4.1E-25 191.6 15.5 201 156-362 24-224 (224)
26 3pdy_A Plectin; cytoskeleton, 99.8 7.4E-20 2.5E-24 183.1 20.7 200 157-362 10-209 (210)
27 2iak_A Bullous pemphigoid anti 99.8 2.9E-20 9.9E-25 188.8 15.1 200 715-934 23-223 (224)
28 3pdy_A Plectin; cytoskeleton, 99.8 2.7E-19 9.1E-24 179.1 21.6 199 52-256 10-209 (210)
29 3lbx_B Beta-I spectrin, spectr 99.8 4.6E-18 1.6E-22 166.8 20.3 169 363-531 3-171 (185)
30 3lbx_B Beta-I spectrin, spectr 99.8 3.6E-18 1.2E-22 167.5 19.5 167 605-771 3-169 (185)
31 3pe0_A Plectin; cytoskeleton, 99.8 1.3E-17 4.4E-22 173.1 17.5 183 827-1009 3-189 (283)
32 3lbx_A Spectrin alpha chain, e 99.7 1.6E-17 5.5E-22 157.3 15.5 148 5-152 14-161 (161)
33 3f31_A Spectrin alpha chain, b 99.7 4.2E-17 1.4E-21 152.8 16.8 144 6-149 5-148 (149)
34 3pe0_A Plectin; cytoskeleton, 99.7 3.3E-16 1.1E-20 162.5 23.7 181 252-432 2-185 (283)
35 3lbx_A Spectrin alpha chain, e 99.7 3.3E-17 1.1E-21 155.2 14.7 139 799-937 23-161 (161)
36 3f31_A Spectrin alpha chain, b 99.7 1.5E-16 5.1E-21 149.0 16.3 136 799-934 13-148 (149)
37 3uun_A Dystrophin; triple heli 99.3 8.9E-12 3E-16 112.6 12.9 106 833-938 3-113 (119)
38 3uul_A Utrophin; spectrin repe 99.3 2.3E-11 8E-16 109.5 14.6 107 259-365 3-113 (118)
39 1g8x_A Myosin II heavy chain f 99.3 9.4E-12 3.2E-16 150.5 15.0 227 143-369 757-999 (1010)
40 3uul_A Utrophin; spectrin repe 99.3 4.2E-11 1.4E-15 107.8 15.2 106 153-258 3-112 (118)
41 3uun_A Dystrophin; triple heli 99.3 4.2E-11 1.4E-15 108.1 15.0 108 607-714 3-114 (119)
42 1g8x_A Myosin II heavy chain f 99.3 4.2E-11 1.4E-15 144.9 16.4 228 39-266 758-1002(1010)
43 2odv_A Plectin 1, HD1; plakin 99.2 7.8E-10 2.7E-14 109.7 18.7 200 155-358 14-225 (235)
44 2spc_A Spectrin; cytoskeleton; 99.2 1.9E-11 6.6E-16 107.3 6.3 105 257-361 2-106 (107)
45 2spc_A Spectrin; cytoskeleton; 99.2 2.7E-11 9.1E-16 106.4 6.0 105 711-829 2-106 (107)
46 2odv_A Plectin 1, HD1; plakin 99.1 5.7E-09 2E-13 103.5 18.8 200 49-252 13-225 (235)
47 2ycu_A Non muscle myosin 2C, a 98.8 1.8E-10 6.3E-15 139.7 -5.0 216 154-369 760-991 (995)
48 2ycu_A Non muscle myosin 2C, a 98.6 1.4E-09 4.9E-14 131.9 -2.8 213 610-836 762-990 (995)
49 1wlx_A Alpha-actinin 4; three- 98.1 5.1E-05 1.7E-09 65.7 12.8 102 155-256 15-123 (129)
50 1wlx_A Alpha-actinin 4; three- 98.1 5.7E-05 2E-09 65.3 13.0 109 41-151 5-124 (129)
51 3vkg_A Dynein heavy chain, cyt 50.9 6.9E+02 0.024 34.9 26.1 135 122-257 1896-2040(3245)
52 3cvf_A Homer-3, homer protein 44.1 79 0.0027 24.6 6.7 59 9-67 2-61 (79)
53 3fx7_A Putative uncharacterize 40.9 1.1E+02 0.0039 24.6 7.4 57 16-72 23-84 (94)
54 3na7_A HP0958; flagellar bioge 36.2 3.3E+02 0.011 26.9 19.1 132 16-153 28-160 (256)
55 2lw1_A ABC transporter ATP-bin 34.8 1.7E+02 0.0059 23.3 8.9 59 941-999 26-85 (89)
56 3t98_B Nucleoporin NUP58/NUP45 34.1 1.9E+02 0.0063 23.4 8.9 39 609-647 15-55 (93)
57 3cve_A Homer protein homolog 1 32.1 1.7E+02 0.0057 22.3 8.3 53 15-67 2-55 (72)
58 3ghg_A Fibrinogen alpha chain; 29.7 4.1E+02 0.014 28.9 11.6 26 865-890 50-76 (562)
59 3tnu_B Keratin, type II cytosk 27.1 3E+02 0.01 23.7 11.0 15 57-71 7-21 (129)
60 2yy0_A C-MYC-binding protein; 25.5 1.4E+02 0.0049 21.1 5.1 29 906-934 22-50 (53)
61 3tnu_A Keratin, type I cytoske 25.2 3.3E+02 0.011 23.5 10.3 10 58-67 10-19 (131)
62 1ez3_A Syntaxin-1A; three heli 25.0 3.2E+02 0.011 23.2 10.6 64 865-929 6-69 (127)
63 3tnu_B Keratin, type II cytosk 23.0 3.6E+02 0.012 23.2 8.9 14 268-281 7-20 (129)
64 3u1c_A Tropomyosin alpha-1 cha 21.5 3.4E+02 0.012 22.2 13.4 56 906-961 5-61 (101)
65 3vjf_A WA20; protein design, d 20.4 2.7E+02 0.0093 20.7 8.3 38 681-718 10-48 (102)
No 1
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=308.04 Aligned_cols=316 Identities=37% Similarity=0.606 Sum_probs=303.1
Q ss_pred HHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCCCCchHH
Q psy6936 151 ALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-QEYRVTEVNQLADKLVLEGHPERETI 229 (1032)
Q Consensus 151 ~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~-~~~~l~~l~~~~~~l~~~~~~~~~~i 229 (1032)
.+.+++|...++.+..||.+++..+.+.++|.|++.++.++.+|+.|..++.+ +.+.|..++..|..|+..++|+.+.|
T Consensus 5 ~~~l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i 84 (323)
T 3edv_A 5 RHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATI 84 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCChHHH
Confidence 45678999999999999999999998889999999999999999999999998 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHH
Q psy6936 230 VRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAA 309 (1032)
Q Consensus 230 ~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~ 309 (1032)
...++.|+.+|..|...+..|...|+.+..+.+|..+++++..||.+++..+. .++|.|+..++.++.+|+.|+.++..
T Consensus 85 ~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~f~~~~~e~~~Wl~~k~~~l~-~~~~~d~~~v~~l~~~h~~~~~~l~~ 163 (323)
T 3edv_A 85 AEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQA 163 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCSSHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999899999999999999999998885 67899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy6936 310 LEDKVSTLGAEADRLCGIHSD-HGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIIS 388 (1032)
Q Consensus 310 ~~~~l~~l~~~~~~L~~~~~~-~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~ 388 (1032)
+++.|..|...|..|...+|+ ++..|..++..|+.+|..|...+..|...|+.+..++.|...+.++..||.+++..+.
T Consensus 164 ~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~~~~F~~~~~~l~~Wl~~~~~~l~ 243 (323)
T 3edv_A 164 LGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIE 243 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875 5788999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 389 ADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYE 467 (1032)
Q Consensus 389 ~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~ 467 (1032)
+.++|.|+.+++.++.+|+.|..+|..+.+.+..+...|..|+..++|.++.|..++..|..+|..|...|.+|+..|.
T Consensus 244 ~~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~L~~~w~~l~~~w~~R~~~L~ 322 (323)
T 3edv_A 244 AQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322 (323)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999999999999998889999999999999999999999999998875
No 2
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=100.00 E-value=1.3e-32 Score=300.43 Aligned_cols=317 Identities=28% Similarity=0.477 Sum_probs=302.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q psy6936 48 RFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKR 126 (1032)
Q Consensus 48 ~~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~ 126 (1032)
+...|...+..+..||.+++..+.+..+ .++..|+.++++|+.|..+|..+++.|..+...|..|...++++++.|..+
T Consensus 4 ~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~ 83 (322)
T 1u4q_A 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDK 83 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHH
Confidence 3568999999999999999998877554 689999999999999999999999999999999999998888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHH
Q psy6936 127 LEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEY 206 (1032)
Q Consensus 127 l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~ 206 (1032)
+..|..+|..|...+..|...|+.++.+.+|...+.++..||.+++..+.+.++|.|+..++.++++|+.|..+|..+.+
T Consensus 84 ~~~l~~~w~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~el~~~~~ 163 (322)
T 1u4q_A 84 RETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 163 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCcccc
Q psy6936 207 RVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY 286 (1032)
Q Consensus 207 ~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~ 286 (1032)
.+..+...|..|+..++|+.+.|..++..|+.+|..|...+..|...|+.++.+.+|..+++++..||.+.+..+.+.++
T Consensus 164 ~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~~~~~~~qf~~~~~~~~~Wl~~~e~~l~~~~~ 243 (322)
T 1u4q_A 164 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDY 243 (322)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 287 GRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESY 364 (1032)
Q Consensus 287 ~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~ 364 (1032)
|.|++.++.++.+|+.|..++..+.+.|..|...|..|+..+++++..|..++..|+.+|..|...+.+|..+|+++.
T Consensus 244 g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~R~~~L~~a~ 321 (322)
T 1u4q_A 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 321 (322)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998888999999999999999999999999999998653
No 3
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=100.00 E-value=1.8e-32 Score=299.31 Aligned_cols=317 Identities=28% Similarity=0.530 Sum_probs=303.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHH
Q psy6936 259 EIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAK 338 (1032)
Q Consensus 259 ~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 338 (1032)
....|+..+.++..||.+++..|.+.++|.|+..|+.++++|+.|+.+|..+++.|..++..|..|...+++++..|..+
T Consensus 4 ~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~ 83 (322)
T 1u4q_A 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDK 83 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHH
Confidence 35689999999999999999999888999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhh
Q psy6936 339 RAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 418 (1032)
Q Consensus 339 ~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~ 418 (1032)
+..|+.+|..|...+..|+..|+.++.+++|...+.++..||.+.+..+.+.+++.|+.+++..+.+|+.|..+|..+.+
T Consensus 84 ~~~l~~~w~~L~~~~~~R~~~Le~~~~l~~f~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~~h~~l~~el~~~~~ 163 (322)
T 1u4q_A 84 RETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 163 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhhccCCC
Q psy6936 419 SFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDL 498 (1032)
Q Consensus 419 ~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~ 498 (1032)
.+..+...|..|+..++|+.+.|...+..|..+|..|...+..|..+|+.++.++.|..++..+..||...+..+.+.++
T Consensus 164 ~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~~~~~~~qf~~~~~~~~~Wl~~~e~~l~~~~~ 243 (322)
T 1u4q_A 164 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDY 243 (322)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6936 499 GDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDS 575 (1032)
Q Consensus 499 ~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~ 575 (1032)
|.+++.++.++++|+.|..++..+.+.+..+...|..|+..++++++.|...+..|+.+|..|...+.+|+..|+.+
T Consensus 244 g~~~~~~~~ll~~h~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~R~~~L~~a 320 (322)
T 1u4q_A 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 320 (322)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888877654
No 4
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=100.00 E-value=9.3e-33 Score=301.96 Aligned_cols=318 Identities=26% Similarity=0.418 Sum_probs=269.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHH
Q psy6936 47 RRFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRK 125 (1032)
Q Consensus 47 ~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~ 125 (1032)
...++|...++++.+||.+++..+....+ .|+..++.++++|+.|..+|..+++.|..+...|..|+..++++.+.|..
T Consensus 4 ~~~qqf~~~~~el~~Wl~e~~~~l~~~~~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~ 83 (326)
T 3kbt_A 4 NEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIR 83 (326)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHH
Confidence 45678999999999999999998887655 78999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHh-h
Q psy6936 126 RLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-Q 204 (1032)
Q Consensus 126 ~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~-~ 204 (1032)
++..|+.+|..|...+..|...|+.++.+.+|...++.+..||.+++..+.+.++|.|++.++.++.+|+.|..++.. +
T Consensus 84 ~l~~l~~~w~~L~~~~~~R~~~Le~~l~l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~d~~~v~~l~~~~~~f~~el~~~~ 163 (326)
T 3kbt_A 84 LQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIG 163 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998888999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCcc
Q psy6936 205 EYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSD 284 (1032)
Q Consensus 205 ~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~ 284 (1032)
.+.|..++..|..|+..++|+.+.|...++.|+.+|..|...+..|...|+.+..+.+|..+++++..||.+++..|. .
T Consensus 164 ~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~~~~e~~~Wl~ek~~~L~-~ 242 (326)
T 3kbt_A 164 QERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP-E 242 (326)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-c
Confidence 899999999999999999999999999999999999999999999999999999899999999999999999999885 6
Q ss_pred ccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 285 EYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSD-HGDQIQAKRAEIVEYWERLTGKAKGRKQKLDES 363 (1032)
Q Consensus 285 ~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~-~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 363 (1032)
++|.|+..++.++.+|+.|+.+|..+++.|+.|...|..|...+|+ .+..|..++..|+.+|..|...+..|...|+.+
T Consensus 243 ~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a 322 (326)
T 3kbt_A 243 DVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDT 322 (326)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999998775 578999999999999999999999999999987
Q ss_pred HH
Q psy6936 364 YY 365 (1032)
Q Consensus 364 ~~ 365 (1032)
..
T Consensus 323 ~~ 324 (326)
T 3kbt_A 323 AD 324 (326)
T ss_dssp --
T ss_pred Hh
Confidence 65
No 5
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=100.00 E-value=2.6e-32 Score=315.10 Aligned_cols=414 Identities=17% Similarity=0.291 Sum_probs=348.7
Q ss_pred HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHcCCC-C
Q psy6936 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVT-------EVNQLADKLVLEGHP-E 225 (1032)
Q Consensus 154 ~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~-------~l~~~~~~l~~~~~~-~ 225 (1032)
..+|...+..+..||.+++..+.+.++|.++..++.++..|+.+...... +.+. .++..+..|...+.| .
T Consensus 13 ~~~y~~~~~~ll~Wi~~~~~~l~~~~~~~~l~~~~~~l~~f~~~~~~~~p--~~~~ek~~le~~~~~~~~~l~~~~~~~~ 90 (476)
T 1hci_A 13 MEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKP--PKVQEKCQLEINFNTLQTKLRISNRPAF 90 (476)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTCCCCCSSSTTTTHHHHHHHHHHHHTHH--HHHHHHHHTTTHHHHTTTTTTTTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 36899999999999999999999988899999999998888887766431 2333 456666666543332 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCcccc-CCCHHHHH
Q psy6936 226 RETIVRRKEELSEAWMRLKQLA----------LMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY-GRDLASVQ 294 (1032)
Q Consensus 226 ~~~i~~~~~~l~~rw~~l~~~~----------~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~-~~d~~~~~ 294 (1032)
.|.+...+.+++..|..|.... ..|..+|+.+ +.+|..++.++..||.+++..+...++ |.|+..|+
T Consensus 91 ~~~~~~~~~~i~~~w~~L~~l~~~r~~~l~~~~~R~~~Le~~--~~~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~ 168 (476)
T 1hci_A 91 MPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVR 168 (476)
T ss_dssp CCCGGGCSSSHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHH
Confidence 3344556667777787777665 4555555554 578999999999999999999977777 99999999
Q ss_pred HHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy6936 295 TLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLH------- 367 (1032)
Q Consensus 295 ~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~------- 367 (1032)
.++.+|+.|+.+|..+++.+..|...|..|...++++...|..++..|+.+|..|...+..|..+|+.++.++
T Consensus 169 ~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~~~~~~~~e~l~ 248 (476)
T 1hci_A 169 ALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLH 248 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888889999999999999999999999999999988754
Q ss_pred -HHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHH---HHhhhhhhhcCCC----ChH
Q psy6936 368 -RFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGT---ADAGQSLLDRNHY----AAD 439 (1032)
Q Consensus 368 -~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l---~~~~~~L~~~~~~----~~~ 439 (1032)
+|...+..+..||...+..+.....+.|+++++.++.+|+.|..++..+.+.+..+ ...|..|+...++ ..+
T Consensus 249 ~~f~~~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 328 (476)
T 1hci_A 249 LEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNP 328 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCc
Confidence 79999999999999999999988788899999999999999999999988777666 6778888887665 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhcHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHH
Q psy6936 440 DIREKLRNLENDKTHLLTLWEERRILYEQCMDL--------QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKK 511 (1032)
Q Consensus 440 ~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~--------~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~ 511 (1032)
.+...+..|..+|..|...+..|...|+.++.. ..|..+++.+..||..++..+.+.++|. +++++.++++
T Consensus 329 ~i~~~~~~L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~~~~~Wl~e~e~~l~~~~~~~-~~~le~~l~~ 407 (476)
T 1hci_A 329 YSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQI-TGALEDQMNQ 407 (476)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTT-TTSTHHHHHH
T ss_pred chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CCCHHHHHHH
Confidence 888999999999999999999999999999863 5899999999999999999998655654 5678888999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhcC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6936 512 HEDFEKSLAAQEEKIKALDEFATKLIEGQ---HYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDS 575 (1032)
Q Consensus 512 ~~~l~~el~~~~~~~~~l~~~~~~L~~~~---~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~ 575 (1032)
|+.|..++..+.+.+..+...+..+.... ++.+. ..+..|+.+|+.|...+.+|...|+..
T Consensus 408 ~~~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~l~~~W~~L~~~~~~~~~~lE~~ 471 (476)
T 1hci_A 408 LKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTN---YTMEHIRVGWELLLTTIARTINEVETQ 471 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCS---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888776532 22122 456678888888888888887777653
No 6
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=289.63 Aligned_cols=314 Identities=22% Similarity=0.352 Sum_probs=297.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHHHhcCCCCchHHH
Q psy6936 47 RRFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAA-HSNAIVVLDNTGKEMINQNHFASEVIR 124 (1032)
Q Consensus 47 ~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~-~~~~v~~l~~~~~~L~~~~~~~~~~i~ 124 (1032)
+.+..|...++.+..||.+++..+.+..+ .|++.++.++++|+.|..++.+ +++.|..+...|..|+..++++++.|.
T Consensus 6 ~~l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~ 85 (323)
T 3edv_A 6 HRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIA 85 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 56789999999999999999998887655 6899999999999999999998 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhh
Q psy6936 125 KRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQ 204 (1032)
Q Consensus 125 ~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~ 204 (1032)
.++..|+.+|..|...+..|...|+.++.+..|..+++++..||.+++..+. .++|.|+..++.++++|+.|..+|...
T Consensus 86 ~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~f~~~~~e~~~Wl~~k~~~l~-~~~~~d~~~v~~l~~~h~~~~~~l~~~ 164 (323)
T 3edv_A 86 EWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQAL 164 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCSSHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999889999999999999999998884 678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCc
Q psy6936 205 EYRVTEVNQLADKLVLEGHP-ERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSS 283 (1032)
Q Consensus 205 ~~~l~~l~~~~~~l~~~~~~-~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~ 283 (1032)
++.|..+...|..|+..++| ..+.|...+..|+.+|..|...+..|...|+.+..+..|..+++.+..||.+++..+.+
T Consensus 165 ~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~~~~~F~~~~~~l~~Wl~~~~~~l~~ 244 (323)
T 3edv_A 165 GTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEA 244 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999987765 46799999999999999999999999999999988899999999999999999999987
Q ss_pred cccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 284 DEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLD 361 (1032)
Q Consensus 284 ~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~ 361 (1032)
.+++.|+..++.++.+|+.|..+|..+++.+..+...|..|+..+++++..|..++..|+.+|..|......|...|.
T Consensus 245 ~~~~~d~~~~e~ll~~h~~l~~ei~~~~~~~~~l~~~g~~Ll~~~~~~~~~i~~~l~~L~~~w~~l~~~w~~R~~~L~ 322 (323)
T 3edv_A 245 QEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322 (323)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999988888899999999999999999999999998774
No 7
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=100.00 E-value=6.8e-32 Score=295.07 Aligned_cols=319 Identities=24% Similarity=0.347 Sum_probs=270.7
Q ss_pred HHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHH
Q psy6936 151 ALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIV 230 (1032)
Q Consensus 151 ~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~ 230 (1032)
+....+|+.++.++..||.+++..+.+.++|.|+.+++.++++|+.|..+|..+.+.|..+...|..|+..++|+.+.|.
T Consensus 3 ~~~~qqf~~~~~el~~Wl~e~~~~l~~~~~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~ 82 (326)
T 3kbt_A 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQII 82 (326)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHH-
Q psy6936 231 RRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAA- 309 (1032)
Q Consensus 231 ~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~- 309 (1032)
..+..|+.+|..|...+..|+.+|+.++.+.+|..+++.+..||.+++..+.+.++|.|+..++.++.+|+.|..++..
T Consensus 83 ~~l~~l~~~w~~L~~~~~~R~~~Le~~l~l~~f~~~~~~l~~Wl~~~e~~l~~~~~g~d~~~v~~l~~~~~~f~~el~~~ 162 (326)
T 3kbt_A 83 RLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAI 162 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999899999999999999999999888778999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy6936 310 LEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISA 389 (1032)
Q Consensus 310 ~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~ 389 (1032)
+++.|..++..|..|+..+++++..|...++.|+.+|..|...+..|...|..+..++.|..++.++..||.+.+..+.
T Consensus 163 ~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~~~~e~~~Wl~ek~~~L~- 241 (326)
T 3kbt_A 163 GQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP- 241 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-
Confidence 7899999999999999999888999999999999999999999999999999999999999999999999999999884
Q ss_pred ccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 390 DELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY-AADDIREKLRNLENDKTHLLTLWEERRILYEQ 468 (1032)
Q Consensus 390 ~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~-~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~ 468 (1032)
.+++.|+.+++.++.+|+.|+.+|..+.+.|..+...|..|+...|| .++.|...+..+..+|..|...+..|...|+.
T Consensus 242 ~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~ 321 (326)
T 3kbt_A 242 EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVD 321 (326)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999999987654 47899999999999999999999999999987
Q ss_pred HH
Q psy6936 469 CM 470 (1032)
Q Consensus 469 ~~ 470 (1032)
+.
T Consensus 322 a~ 323 (326)
T 3kbt_A 322 TA 323 (326)
T ss_dssp --
T ss_pred HH
Confidence 65
No 8
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=100.00 E-value=7.7e-31 Score=302.82 Aligned_cols=419 Identities=16% Similarity=0.228 Sum_probs=345.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHhhHHHHH-------HHHHHHHHHHhcCC-CC
Q psy6936 49 FQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIV-------VLDNTGKEMINQNH-FA 119 (1032)
Q Consensus 49 ~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~~~~~v~-------~l~~~~~~L~~~~~-~~ 119 (1032)
..+|...+..+..||.+++..+.+..+ .++..++.++..++.+..... .+.+. .+...|..|...+. +.
T Consensus 13 ~~~y~~~~~~ll~Wi~~~~~~l~~~~~~~~l~~~~~~l~~f~~~~~~~~--p~~~~ek~~le~~~~~~~~~l~~~~~~~~ 90 (476)
T 1hci_A 13 MEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHK--PPKVQEKCQLEINFNTLQTKLRISNRPAF 90 (476)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTCCCCCSSSTTTTHHHHHHHHHHHHTH--HHHHHHHHHTTTHHHHTTTTTTTTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 468999999999999999999987665 467778877777666654432 14444 44455555544332 22
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH--------HHHHHHHhHHHHHhHHhhhhhhccccc-CCCHHHHHHH
Q psy6936 120 SEVIRKRLEELHRLWELLLSKLAEKGMKLQQALV--------LVQFIRQCDEVMFWINDKEAFVTADEF-GADLEHVEVL 190 (1032)
Q Consensus 120 ~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~--------~~~f~~~~~~~~~wl~~~e~~l~~~~~-~~d~~~~~~~ 190 (1032)
.+.+...+.+++..|..|......|...|...+. +.+|...+..+..||.+++..+.+.++ |.|+..++.+
T Consensus 91 ~~~~~~~~~~i~~~w~~L~~l~~~r~~~l~~~~~R~~~Le~~~~~f~~~~~~~~~Wl~e~e~~l~~~~~~g~dl~~v~~l 170 (476)
T 1hci_A 91 MPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRAL 170 (476)
T ss_dssp CCCGGGCSSSHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCCGGGSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCHHHHHHH
Confidence 2334455667777888887776555444433211 578999999999999999999988777 9999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------H
Q psy6936 191 QRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQ--------R 262 (1032)
Q Consensus 191 l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~--------~ 262 (1032)
+++|+.|..+|..+...+..+...|..|+..++++.+.|..++..|+.+|..|...+..|...|+.+..+. +
T Consensus 171 l~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~~~~~~~~e~l~~~ 250 (476)
T 1hci_A 171 LRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 250 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988899899999999999999999999999999999996554 7
Q ss_pred HHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHH---HHHHHHhhhcCCC----CchhH
Q psy6936 263 FNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTL---GAEADRLCGIHSD----HGDQI 335 (1032)
Q Consensus 263 f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l---~~~~~~L~~~~~~----~~~~i 335 (1032)
|..++..+..||.+++..+....+|.|++.++.++.+|+.|..++..+++.+..+ ...|..|+..+++ +.+.+
T Consensus 251 f~~~a~~~~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~i 330 (476)
T 1hci_A 251 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYS 330 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCSCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcch
Confidence 9999999999999999999887889999999999999999999999998877766 6778888877654 56778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH
Q psy6936 336 QAKRAEIVEYWERLTGKAKGRKQKLDESYYL--------HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQ 407 (1032)
Q Consensus 336 ~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~--------~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~ 407 (1032)
...+..|..+|..|...+..|...|+.++.. +.|...+..+..||.+.+..+.+.+++ .+.+++.++.+|+
T Consensus 331 ~~~~~~L~~~w~~L~~~~~~R~~~L~~~l~~~~~~~~L~~~F~~~a~~~~~Wl~e~e~~l~~~~~~-~~~~le~~l~~~~ 409 (476)
T 1hci_A 331 TVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSIQ-ITGALEDQMNQLK 409 (476)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCT-TTTSTHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCHHHHHHHHH
Confidence 8999999999999999999999999998863 589999999999999999998865443 2568888999999
Q ss_pred hhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 408 EHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCM 470 (1032)
Q Consensus 408 ~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~ 470 (1032)
.|..+|..+.+.+..+...|..+.....++.+.....+..|..+|+.|...+..|...|++.+
T Consensus 410 ~~~~el~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~~~~~~lE~~i 472 (476)
T 1hci_A 410 QYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQI 472 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888765432211121226788999999999999999999998753
No 9
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=99.97 E-value=5.2e-28 Score=264.82 Aligned_cols=345 Identities=13% Similarity=0.199 Sum_probs=304.4
Q ss_pred HHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q psy6936 158 IRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELS 237 (1032)
Q Consensus 158 ~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~ 237 (1032)
...++++..||.+++..+.+.++|.|+.+|+.++++|+.|+.+|.++...|..+...+ + .. ..+..|.
T Consensus 8 ~r~v~dl~~Wl~E~~~~L~S~d~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a------~--~~----~~~~~L~ 75 (450)
T 3r6n_A 8 KHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADL------R--EK----SAIYQLE 75 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C--CH----HHHHHHH
T ss_pred hccHHHHHHHHHHHHHhcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------c--Cc----HHHHHHH
Confidence 4568899999999999999999999999999999999999999999999998886552 1 11 2577899
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHH
Q psy6936 238 EAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTL 317 (1032)
Q Consensus 238 ~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l 317 (1032)
.+|..|...+..|+..|+ .+++|..++++...||.+.+..+.+.++|.++..+...+.+|+.|+.+|.++++.+..+
T Consensus 76 ~~y~~L~~~a~~Rr~~Le---~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~~v 152 (450)
T 3r6n_A 76 EEYENLLKASFERMDHLR---QLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKL 152 (450)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHchHHHHHH
Confidence 999999999999999998 57899999999999999999988888888777777788899999999999999999999
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cccC
Q psy6936 318 GAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISAD---ELAK 394 (1032)
Q Consensus 318 ~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~---~~~~ 394 (1032)
...|+.|+..+++++..|..+++.|+..|..|...+..|..+|..+..+++|+.+++++..||.+.+..|.+. +.+.
T Consensus 153 ~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~EaesWL~eke~~l~s~y~~D~g~ 232 (450)
T 3r6n_A 153 KQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNM 232 (450)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTC
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccCcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998775 5677
Q ss_pred CHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhc-----------------------------------------
Q psy6936 395 DVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDR----------------------------------------- 433 (1032)
Q Consensus 395 d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~----------------------------------------- 433 (1032)
|..+++.++++|..++.+|..+...+..+...+..++..
T Consensus 233 d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~~l~~r~~~~~~~~~~~V~alcdy~~~e~~i~kge~~~L~~ns~ 312 (450)
T 3r6n_A 233 PLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQDQKIVHKGDECILKDNNE 312 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGSTTCCCSSCCEEEESSCEEETTEEECTTCEEEEEECSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccccCCeeeEecCCEEEEecCCC
Confidence 899999999999999999999999999999999887641
Q ss_pred ----------------------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhh
Q psy6936 434 ----------------------NHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEA 491 (1032)
Q Consensus 434 ----------------------~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~WL~~~e~ 491 (1032)
.||+.+..-+..+.|.+.|+.+...|..+...+++.+.|+.|+.++..+..|...+-.
T Consensus 313 ~~~W~V~~~~G~~~~vPavcf~ipppd~eai~~a~~l~~~~~~~~~lw~~~~~~~~~~~~~~~~~~d~~~i~~w~~~~~~ 392 (450)
T 3r6n_A 313 RSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLK 392 (450)
T ss_dssp SSEEEEECSSSCCEEEEGGGEECCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHT
T ss_pred CCceEEecCCCCeeccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0234566777889999999999999999999999999999999999999999998776
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy6936 492 FLSNEDLGDSLDSVEALIKKHEDFEKSLA 520 (1032)
Q Consensus 492 ~l~~~~~~~~~~~~~~~l~~~~~l~~el~ 520 (1032)
.+...+. -..++.+..+|.+|.++..
T Consensus 393 ~~~~~~~---~~~~~~l~~~~~~f~~~~~ 418 (450)
T 3r6n_A 393 TMRQEDY---MKTIADLELHYQEFIRNSQ 418 (450)
T ss_dssp TSCTTTH---HHHHHHHHHHHHHHHHHHT
T ss_pred hcCHHHH---HHHHHHHHHHHHHHHHcCC
Confidence 6643222 2234445556666666544
No 10
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=99.96 E-value=2.5e-26 Score=251.60 Aligned_cols=371 Identities=13% Similarity=0.181 Sum_probs=311.5
Q ss_pred HhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy6936 54 RDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHR 132 (1032)
Q Consensus 54 ~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~ 132 (1032)
..++++..||.+++..+.+..+ .|+.+|+.++++|+.|+.+|..+...|..+...+ + . ..++..|..
T Consensus 9 r~v~dl~~Wl~E~~~~L~S~d~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a------~--~----~~~~~~L~~ 76 (450)
T 3r6n_A 9 HVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADL------R--E----KSAIYQLEE 76 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C--C----HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------c--C----cHHHHHHHH
Confidence 5688999999999999988766 6899999999999999999999999999887652 1 1 235789999
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6936 133 LWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVN 212 (1032)
Q Consensus 133 ~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~ 212 (1032)
+|..|...+..|...|+ .+++|+.++++...||.+.+..+.+.++|.++.++...+++|+.|..+|..+.+.+..+.
T Consensus 77 ~y~~L~~~a~~Rr~~Le---~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~dv~~l~~khq~l~~EL~~~e~~i~~v~ 153 (450)
T 3r6n_A 77 EYENLLKASFERMDHLR---QLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLK 153 (450)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccccCcChhhHHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 99999999999999998 478999999999999999999998888888887888889999999999999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCcc---ccCCC
Q psy6936 213 QLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSD---EYGRD 289 (1032)
Q Consensus 213 ~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~---~~~~d 289 (1032)
..|+.|+..+||..+.|+.+++.|+.+|..|...+..|...|+.+..+.+|+.+++++..||.+.+..|.+. ++|.|
T Consensus 154 ~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~EaesWL~eke~~l~s~y~~D~g~d 233 (450)
T 3r6n_A 154 QESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMP 233 (450)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTCC
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccCcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754 78999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcC---C-------------------------------------
Q psy6936 290 LASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIH---S------------------------------------- 329 (1032)
Q Consensus 290 ~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~---~------------------------------------- 329 (1032)
...++.++++|..++.++..++..|..|...+..|+... |
T Consensus 234 ~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~~l~~r~~~~~~~~~~~V~alcdy~~~e~~i~kge~~~L~~ns~~ 313 (450)
T 3r6n_A 234 LQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQDQKIVHKGDECILKDNNER 313 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGSTTCCCSSCCEEEESSCEEETTEEECTTCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccccCCeeeEecCCEEEEecCCCC
Confidence 999999999999999999999999999999999876411 0
Q ss_pred -----------------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 330 -----------------------DHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAI 386 (1032)
Q Consensus 330 -----------------------~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~ 386 (1032)
+-....-+....|...|+++..+-..+...+...+.|+.|..++..+.+|.-.+...
T Consensus 314 ~~W~V~~~~G~~~~vPavcf~ipppd~eai~~a~~l~~~~~~~~~lw~~~~~~~~~~~~~~~~~~d~~~i~~w~~~~~~~ 393 (450)
T 3r6n_A 314 SKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLKT 393 (450)
T ss_dssp SEEEEECSSSCCEEEEGGGEECCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTT
T ss_pred CceEEecCCCCeeccceeEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 012345577899999999999999999999999999999999999999999988776
Q ss_pred hccccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHH
Q psy6936 387 ISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLL 456 (1032)
Q Consensus 387 l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~ 456 (1032)
|.+.+.. ..++. .+..++.+...+..---.++++.-.++..+...+..|+.|.
T Consensus 394 ~~~~~~~---~~~~~--------------l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (450)
T 3r6n_A 394 MRQEDYM---KTIAD--------------LELHYQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLV 446 (450)
T ss_dssp SCTTTHH---HHHHH--------------HHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHH---HHHHH--------------HHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 6544221 11111 11123333333222111122345567777777777777664
No 11
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.95 E-value=9.6e-27 Score=288.40 Aligned_cols=447 Identities=15% Similarity=0.232 Sum_probs=350.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHH--HHHHhHh----HHHHHH-HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHH
Q psy6936 117 HFASEVIRKRLEELHRLWELLLSK--LAEKGMK----LQQALV-LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEV 189 (1032)
Q Consensus 117 ~~~~~~i~~~l~~L~~~w~~L~~~--~~~r~~~----L~~~l~-~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~ 189 (1032)
.|+...|..-+..+-..+..+... ...|... ..+.-. ..+|...+.++..||++++..+.+.++|.++..++.
T Consensus 208 ~pd~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~y~~~~~el~~Wi~~~~~~l~~~~~~~~l~~v~~ 287 (863)
T 1sjj_A 208 RPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPENTMQAMQQ 287 (863)
T ss_dssp SCCHHHHHHHHHHTTTTTCCCSCSTTCCTTCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCCCSSHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCHHHHHH
Confidence 345556666666665555443321 0011111 111212 357999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHHh-hHH---HHHH-HHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Q psy6936 190 LQRKFDEFQKDMAS-QEY---RVTE-VNQLADKLVLEGHP-ERETIVRRKEELSEAWMRLKQLAL----------MRQEK 253 (1032)
Q Consensus 190 ~l~~~~~l~~~l~~-~~~---~l~~-l~~~~~~l~~~~~~-~~~~i~~~~~~l~~rw~~l~~~~~----------~r~~~ 253 (1032)
++++|..++..... ... .++. +...+..+...+.| -.+.....+.+|+.+|..|..... .|..+
T Consensus 288 ~l~~~~~~~~~~k~~~~~e~~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~w~~L~~~~~~r~~~l~~~~~R~~~ 367 (863)
T 1sjj_A 288 KLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLER 367 (863)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHTTTHHHHHTTTTSSCCCCCSTTSCGGGHHHHHHHHHHHHTTTHHHHHHHHEEHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986432 111 2221 12233333222222 233345567888899999988765 45555
Q ss_pred HHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCC-CHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCc
Q psy6936 254 LFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGR-DLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHG 332 (1032)
Q Consensus 254 Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~ 332 (1032)
|+. .+.+|..+++++..||.+++..+...++|. |+..++.++++|+.|+.++..++..+..+...|+.|...++++.
T Consensus 368 Le~--l~~~F~~~~~~~~~Wl~~~e~~l~~~~~g~~dl~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~ 445 (863)
T 1sjj_A 368 LDH--LAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDS 445 (863)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 554 347899999999999999999998888887 99999999999999999999999999999999999999888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHH
Q psy6936 333 DQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLH--------RFLADYRDLISWVSDMKAIISADELAKDVAGAEALLE 404 (1032)
Q Consensus 333 ~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~--------~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~ 404 (1032)
..|..++..|..+|..|...+..|+.+|+.++..+ +|...+.++..||...+..+.+..++.|+.+++.++.
T Consensus 446 ~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~ 525 (863)
T 1sjj_A 446 PSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTT 525 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHHHHHH
Confidence 99999999999999999999999999999998754 7889999999999999999998888889999999999
Q ss_pred HHHhhHhHHHHhhhhHHHHHHhhhhhhhc-------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy6936 405 RHQEHKGEIDAREDSFRGTADAGQSLLDR-------NHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMD------ 471 (1032)
Q Consensus 405 ~~~~l~~~l~~~~~~~~~l~~~~~~L~~~-------~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~------ 471 (1032)
+|+.+..++..+.+.+..+...+..+... +.+..+.+...+..|..+|..|...+..|+.+|+.++.
T Consensus 526 kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~ 605 (863)
T 1sjj_A 526 AHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNE 605 (863)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999998898888888877652 12234455567999999999999999999999999884
Q ss_pred --HHHHhhcHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCChhHHHH
Q psy6936 472 --LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQ 549 (1032)
Q Consensus 472 --~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~ 549 (1032)
++.|..++..+..||.+++..+.+..++. +.+++.++.+|+.|..++....+.+..+...+..|....++..+.+..
T Consensus 606 ~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~~-~~~le~~l~~~~~~~~el~~~~~~i~~l~~l~~~L~~~~~~~~~~~~~ 684 (863)
T 1sjj_A 606 RLRKQFGAQANVIGPWIQTKMEEIGRISIEM-HGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNY 684 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTCT-TTSSHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHTTTCCCCTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 46788999999999999999998655542 246777889999999999999999999999999998766544333334
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6936 550 RRDLLLKRRAGLLEKSA 566 (1032)
Q Consensus 550 ~~~~l~~r~~~l~~~~~ 566 (1032)
..+.+...|..|...+.
T Consensus 685 s~e~l~i~~~eF~~~~~ 701 (863)
T 1sjj_A 685 TMEHIRVGWEQLLTTIA 701 (863)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44555556666555443
No 12
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.95 E-value=4.2e-26 Score=282.62 Aligned_cols=426 Identities=15% Similarity=0.247 Sum_probs=342.2
Q ss_pred HHHhhcHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHh-H---HHHHHH-HHHHHhhhhcCC-CChhH
Q psy6936 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQ-E---EKIKAL-DEFATKLIEGQH-YAADD 546 (1032)
Q Consensus 473 ~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~-~---~~~~~l-~~~~~~L~~~~~-~~~~~ 546 (1032)
..|...+..+..||...+..+...++|.++..++.++.+|..|....... . ..++.+ ...+..+...+. .-.+.
T Consensus 253 ~~y~~~~~el~~Wi~~~~~~l~~~~~~~~l~~v~~~l~~~~~~~~~~k~~~~~e~~~le~~~~~l~~~l~~~~~~~~~~~ 332 (863)
T 1sjj_A 253 EDYEKLASDLLEWIRRTIPWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPS 332 (863)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSSCCCCCSSHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTTHHHHHTTTTSSCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 46888889999999999999998889999999999999999998854321 1 122211 222333322211 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHhHHHHHHHHHHHH
Q psy6936 547 VAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMK 626 (1032)
Q Consensus 547 i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~~~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e 626 (1032)
....+..++.+|..|......|...|.... .|..+|+.. +.+|...+.++..||.+.+
T Consensus 333 ~~~~~~~i~~~w~~L~~~~~~r~~~l~~~~--------------------~R~~~Le~l--~~~F~~~~~~~~~Wl~~~e 390 (863)
T 1sjj_A 333 EGKMVSDINNAWGGLEQAEKGYEEWLLNEI--------------------RRLERLDHL--AEKFRQKASIHESWTDGKE 390 (863)
T ss_dssp TTSCGGGHHHHHHHHHHHHTTTHHHHHHHH--------------------EEHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 233456677788888877666555544332 345555542 4789999999999999999
Q ss_pred HHhchhhhcc-CHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 627 AIISADELAK-DVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 705 (1032)
Q Consensus 627 ~~l~~~~~~~-~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~ 705 (1032)
..+.....+. ++..++..+++|++|..+|..+.+.+..+...|+.|+..++++.+.|..++..|..+|..|...+..|+
T Consensus 391 ~~l~~~~~g~~dl~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~ 470 (863)
T 1sjj_A 391 AMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRR 470 (863)
T ss_dssp HHHHSCTTTSSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998755444 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--------HHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhh
Q psy6936 706 ILYEQCMDLQ--------LFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKV 777 (1032)
Q Consensus 706 ~~Le~~l~~~--------~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~ 777 (1032)
.+|+.++... .|...+..+..||...+..|...++|.+++.++.++++|+.|+.++..+...+..+
T Consensus 471 ~~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~------ 544 (863)
T 1sjj_A 471 EALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAI------ 544 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHTTHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHhHHHHHHHHHHHH------
Confidence 9999998763 78889999999999999999988899999999999999999999999998888877
Q ss_pred hhhhhhhHHHHHHHhhh---c----CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HhHHhhhhh
Q psy6936 778 NTMQIKALDEFATKLIE---G----QHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY-------K-FQQFERDCD 842 (1032)
Q Consensus 778 ~~~~~~~~~~~~~~L~~---~----~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~-------~-~~~f~~~~~ 842 (1032)
...+..+.. . ++.+...+...+..|..+|+.|+..+..|+..|+.++ . ++.|..+++
T Consensus 545 --------~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~l~~~~~~~~l~~~F~~~a~ 616 (863)
T 1sjj_A 545 --------LGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQAN 616 (863)
T ss_dssp --------HHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444432 1 1122233445688999999999999999999999976 3 466889999
Q ss_pred HHHHHHHhhhhhccccCCCCcchhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q psy6936 843 ETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESL 922 (1032)
Q Consensus 843 ~l~~Wl~~~~~~l~~~~~~~~~~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l 922 (1032)
++..||.+++..+....++.+..++.++.+|+.|..++..+.+.+..+...|+.+....+++.+.+...++.+...|..+
T Consensus 617 ~~~~Wi~e~e~~l~~~~~~~~~~le~~l~~~~~~~~el~~~~~~i~~l~~l~~~L~~~~~~~~~~~~~s~e~l~i~~~eF 696 (863)
T 1sjj_A 617 VIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQL 696 (863)
T ss_dssp HHHHHHHHHHHHTTSCTTCTTTSSHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHTTTCCCCTTCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHH
Confidence 99999999998887655555677889999999999999999999999999999999887766666667788888999998
Q ss_pred HHHHHHHHHHHH
Q psy6936 923 ATATEKKGNKLQ 934 (1032)
Q Consensus 923 ~~~~~~~~~~L~ 934 (1032)
...+..+...++
T Consensus 697 ~~~~~~~~~~~e 708 (863)
T 1sjj_A 697 LTTIARTINEVE 708 (863)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH
Confidence 888777654443
No 13
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=99.92 E-value=2.3e-23 Score=212.14 Aligned_cols=211 Identities=30% Similarity=0.550 Sum_probs=201.3
Q ss_pred HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q psy6936 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRK 233 (1032)
Q Consensus 154 ~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~ 233 (1032)
...|...+.++..||.+++..+.+.++|.|+..++.++++|+.|..+|..+++.|..++..|..|+..++++.+.|..++
T Consensus 5 ~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~ 84 (216)
T 1u5p_A 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKR 84 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 46799999999999999999999989999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHH
Q psy6936 234 EELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDK 313 (1032)
Q Consensus 234 ~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~ 313 (1032)
..|+.+|..|...+..|+..|+.++.+++|..+++++..||.+++..+.+.++|.|+..++.++.+|+.|+.+|..+++.
T Consensus 85 ~~l~~~w~~L~~~~~~R~~~Le~~~~l~qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~ 164 (216)
T 1u5p_A 85 ETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPA 164 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999988999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 314 VSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESY 364 (1032)
Q Consensus 314 l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~ 364 (1032)
|..|...|..|+..+++++..|..++..|+.+|..|...+..|..+|+.++
T Consensus 165 i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~al 215 (216)
T 1u5p_A 165 IQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215 (216)
T ss_dssp HHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999889999999999999999999999999999988754
No 14
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=99.92 E-value=4e-23 Score=210.08 Aligned_cols=211 Identities=32% Similarity=0.510 Sum_probs=204.0
Q ss_pred HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHH
Q psy6936 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRK 233 (1032)
Q Consensus 154 ~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~ 233 (1032)
+.+|...+.++..||.+++..+.+.++|.|+..++.++++|+.|..+|..+.+.+..+...|..|+..++|+.+.|...+
T Consensus 2 l~qf~~~~~~~~~Wl~e~e~~l~~~~~g~dl~~v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~i~~~~ 81 (213)
T 1cun_A 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRL 81 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHH
Q psy6936 234 EELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDK 313 (1032)
Q Consensus 234 ~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~ 313 (1032)
..|+.+|..|...+..|...|+.++.+.+|..+++++..||.+++..+.+.++|.|+..++.++.+|+.|+.++..+++.
T Consensus 82 ~~l~~~w~~L~~~~~~R~~~Le~~~~~~~f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~~~~ 161 (213)
T 1cun_A 82 AQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDR 161 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 314 VSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESY 364 (1032)
Q Consensus 314 l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~ 364 (1032)
|..|...|..|+..+++++..|..++..|..+|..|...+..|+..|+++.
T Consensus 162 i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~~L~~a~ 212 (213)
T 1cun_A 162 VNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212 (213)
T ss_dssp HHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999989999999999999999999999999999998764
No 15
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=99.91 E-value=2.5e-22 Score=204.16 Aligned_cols=211 Identities=26% Similarity=0.514 Sum_probs=203.7
Q ss_pred HHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHH
Q psy6936 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKR 339 (1032)
Q Consensus 260 ~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~ 339 (1032)
+++|..+++++..||.+++..+.+.++|.|+..++.++.+|+.|+.+|.++++.|..+...|..|+..+++++..|..++
T Consensus 2 l~qf~~~~~~~~~Wl~e~e~~l~~~~~g~dl~~v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~i~~~~ 81 (213)
T 1cun_A 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRL 81 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 57899999999999999999998889999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhh
Q psy6936 340 AEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDS 419 (1032)
Q Consensus 340 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~ 419 (1032)
..|+.+|..|...+..|..+|+.++.+++|..++.++..||.+.+..+.+.+++.|+.+++.++.+|+.|..++..+.+.
T Consensus 82 ~~l~~~w~~L~~~~~~R~~~Le~~~~~~~f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~~~~ 161 (213)
T 1cun_A 82 AQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDR 161 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 420 FRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCM 470 (1032)
Q Consensus 420 ~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~ 470 (1032)
+..+...|..|+..++|.++.|...+..|..+|..|...+..|+..|+.+.
T Consensus 162 i~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~l~~~~~~R~~~L~~a~ 212 (213)
T 1cun_A 162 VNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212 (213)
T ss_dssp HHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999998753
No 16
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=99.91 E-value=3e-23 Score=210.69 Aligned_cols=212 Identities=29% Similarity=0.502 Sum_probs=180.0
Q ss_pred HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCCCCchHHHHH
Q psy6936 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-QEYRVTEVNQLADKLVLEGHPERETIVRR 232 (1032)
Q Consensus 154 ~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~-~~~~l~~l~~~~~~l~~~~~~~~~~i~~~ 232 (1032)
+++|...++.+..||.+++..+.+.++|.|++.++.++.+|+.|..++.+ +.+.|..++..|..|+..++|+.+.|...
T Consensus 3 L~~f~~~~~~l~~Wl~~ke~~l~~~~~g~dl~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~ 82 (218)
T 3edu_A 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEW 82 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 57899999999999999999999889999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHH
Q psy6936 233 KEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALED 312 (1032)
Q Consensus 233 ~~~l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~ 312 (1032)
++.|+.+|..|...+..|...|+.+..+.+|+.+++++..||.+++..|+ .++|.|+..++.++.+|+.|+.++..+++
T Consensus 83 ~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~F~~~~~e~~~Wl~ek~~~l~-~~~g~dl~~v~~l~~~h~~~e~dL~~~~~ 161 (218)
T 3edu_A 83 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGV 161 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999995 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 313 KVSTLGAEADRLCGIHSD-HGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYL 366 (1032)
Q Consensus 313 ~l~~l~~~~~~L~~~~~~-~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~ 366 (1032)
.|..|...|..|...+|+ .+..|..+++.|..+|..|...+..|..+|+.+..+
T Consensus 162 ~v~~l~~~a~~L~~~~~~~~a~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~ 216 (218)
T 3edu_A 162 QVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 216 (218)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988873 578999999999999999999999999999988763
No 17
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=99.91 E-value=2.2e-22 Score=204.87 Aligned_cols=212 Identities=31% Similarity=0.541 Sum_probs=201.8
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHH
Q psy6936 259 EIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAK 338 (1032)
Q Consensus 259 ~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 338 (1032)
....|...+.++..||.+++..|.+.++|.|+..|+.++++|+.|+.+|..+++.|..+...|..|+..+++++..|..+
T Consensus 4 ~~~~F~~~~~~l~~Wl~~~e~~l~~~~~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~ 83 (216)
T 1u5p_A 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDK 83 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 35689999999999999999999888999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhh
Q psy6936 339 RAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 418 (1032)
Q Consensus 339 ~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~ 418 (1032)
+..|+.+|..|...+..|+.+|+.++.+++|..++.++..||.+.+..+.+.+++.|+.+++.++.+|+.|..+|..+.+
T Consensus 84 ~~~l~~~w~~L~~~~~~R~~~Le~~~~l~qf~~~~~~~~~Wl~e~e~~~~~~~~g~dl~~v~~ll~kh~~~~~el~~~~~ 163 (216)
T 1u5p_A 84 RETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEP 163 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 419 SFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCM 470 (1032)
Q Consensus 419 ~~~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~ 470 (1032)
.+..+...|..|+..++|+++.|..++..|..+|..|...+..|...|+.++
T Consensus 164 ~i~~l~~~g~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~al 215 (216)
T 1u5p_A 164 AIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESL 215 (216)
T ss_dssp HHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999987654
No 18
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=99.91 E-value=1.9e-22 Score=205.04 Aligned_cols=210 Identities=26% Similarity=0.446 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCC-CChHHHHHHH
Q psy6936 367 HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNH-YAADDIREKL 445 (1032)
Q Consensus 367 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~-~~~~~i~~~l 445 (1032)
++|...+.++..|+..++..+.+.++|.|+.+++.++.+|+.+..+|..+.+.|..+...|..|+...+ |+.+.|...+
T Consensus 3 q~F~~~~~~l~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l 82 (214)
T 1s35_A 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRL 82 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 579999999999999999999988899999999999999999999999999999999999999998754 4578999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Q psy6936 446 RNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEK 525 (1032)
Q Consensus 446 ~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~ 525 (1032)
..|..+|..|...+..|+.+|++++.++.|..++.++..||...+..|.+.++|.++++++.++++|+.|..++..+...
T Consensus 83 ~~L~~~w~~L~~~~~~r~~~L~~~l~l~~F~~~~~~~~~Wl~~~E~~l~~~~~g~~~~~v~~llkkh~~f~~~l~~~~~~ 162 (214)
T 1s35_A 83 EGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDK 162 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy6936 526 IKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY 576 (1032)
Q Consensus 526 ~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~L~~~~ 576 (1032)
+..+...|+.|...+||+++.|..++..|..+|..|...+.+|+..|+.+.
T Consensus 163 i~~l~~~a~~L~~~~h~~~~~I~~~~~~l~~rw~~l~~~~~~R~~~L~~~l 213 (214)
T 1s35_A 163 VLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNL 213 (214)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998888887653
No 19
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=99.91 E-value=2e-22 Score=204.83 Aligned_cols=210 Identities=26% Similarity=0.446 Sum_probs=199.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCC-ChHHHHHHH
Q psy6936 609 HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY-AADDIREKL 687 (1032)
Q Consensus 609 ~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~-~~~~i~~~l 687 (1032)
++|...+.++..|+..++..+.+.+.|+|+..++..+.+|+.+..+|..+.+.|..+...|+.|+...+. +.+.|+..+
T Consensus 3 q~F~~~~~~l~~Wl~~~~~~l~~~~~~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~~~~~i~~~l 82 (214)
T 1s35_A 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDPEYLLLGQRL 82 (214)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 4699999999999999999998877899999999999999999999999999999999999999987644 467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHH
Q psy6936 688 RNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEK 767 (1032)
Q Consensus 688 ~~l~~~w~~l~~~~~~r~~~Le~~l~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 767 (1032)
..|+.+|..|...|..|+.+|++++..+.|..++.++..||...|..|...++|.+++.++.++++|+.|+.++..+..+
T Consensus 83 ~~L~~~w~~L~~~~~~r~~~L~~~l~l~~F~~~~~~~~~Wl~~~E~~l~~~~~g~~~~~v~~llkkh~~f~~~l~~~~~~ 162 (214)
T 1s35_A 83 EGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDK 162 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 768 IKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY 832 (1032)
Q Consensus 768 ~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~ 832 (1032)
|..+ ...|..|+..+|+++..|..++..|..||..|...+..|...|+.++
T Consensus 163 i~~l--------------~~~a~~L~~~~h~~~~~I~~~~~~l~~rw~~l~~~~~~R~~~L~~~l 213 (214)
T 1s35_A 163 VLSP--------------VDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNL 213 (214)
T ss_dssp HHHH--------------HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHH--------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 99999999999999999999999999999999999999999998653
No 20
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.7e-22 Score=203.60 Aligned_cols=208 Identities=53% Similarity=0.892 Sum_probs=177.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHH
Q psy6936 604 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDI 683 (1032)
Q Consensus 604 ~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i 683 (1032)
+++.++.|...+.++..||..++..+...+.|.|++.++..+..|+.+..+|..+.+.+..+...|+.|+..++++.+.|
T Consensus 11 ~~~~~~~F~~~~~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i 90 (218)
T 3fb2_A 11 DSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEI 90 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 44567899999999999999999999888889999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHH
Q psy6936 684 REKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAA 763 (1032)
Q Consensus 684 ~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 763 (1032)
+..+..|+.+|..|...|..|+.+|++++..+.|..++.++..||...|..|...++|.+++.++.++++|+.|+.++..
T Consensus 91 ~~~l~~L~~~w~~L~~~~~~R~~~L~q~l~l~~F~~d~~~~~~WL~~~e~~L~~~~~g~s~~~ve~ll~~h~~f~~~l~~ 170 (218)
T 3fb2_A 91 KQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINV 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999989999999999999999999998888999999999999999999999999
Q ss_pred HHHHHHHhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 764 QEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRR 825 (1032)
Q Consensus 764 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~ 825 (1032)
+..+|..+ ...|..|+..++++++.|..++..|+.||+.|...+..|+
T Consensus 171 ~~~~v~~l--------------~~~~~~L~~~~h~~~~~I~~~~~~l~~rW~~l~~~l~~rr 218 (218)
T 3fb2_A 171 QEEKIAAL--------------QAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218 (218)
T ss_dssp HHHHHHHH--------------HHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHH--------------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999 9999999999999999999999999999999999887764
No 21
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=99.90 E-value=3.6e-22 Score=202.68 Aligned_cols=208 Identities=53% Similarity=0.892 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHH
Q psy6936 362 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDI 441 (1032)
Q Consensus 362 ~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i 441 (1032)
+++.++.|...+.++..||..++..+.+.++|.|+.+++.++.+|+.+..+|..+.+.+..+...|..|+..++|..+.|
T Consensus 11 ~~~~~~~F~~~~~~l~~Wl~~~~~~l~~~e~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i 90 (218)
T 3fb2_A 11 DSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHYASPEI 90 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 45567899999999999999999999988899999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy6936 442 REKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAA 521 (1032)
Q Consensus 442 ~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~ 521 (1032)
...+..|..+|..|...|..|+.+|++++.++.|..++..+..||...+..|.+.++|.+++.++.++++|+.|+.++..
T Consensus 91 ~~~l~~L~~~w~~L~~~~~~R~~~L~q~l~l~~F~~d~~~~~~WL~~~e~~L~~~~~g~s~~~ve~ll~~h~~f~~~l~~ 170 (218)
T 3fb2_A 91 KQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINV 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 522 QEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRR 569 (1032)
Q Consensus 522 ~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~ 569 (1032)
....+..|...|..|+..++|+++.|..++..|+.+|+.|...+.+|+
T Consensus 171 ~~~~v~~l~~~~~~L~~~~h~~~~~I~~~~~~l~~rW~~l~~~l~~rr 218 (218)
T 3fb2_A 171 QEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999988776653
No 22
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=99.88 E-value=1.6e-21 Score=197.87 Aligned_cols=212 Identities=23% Similarity=0.331 Sum_probs=178.6
Q ss_pred HHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHH-hHHHHHHHHHHHHHhhhcCCCCchhHHHH
Q psy6936 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAA-LEDKVSTLGAEADRLCGIHSDHGDQIQAK 338 (1032)
Q Consensus 260 ~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~-~~~~l~~l~~~~~~L~~~~~~~~~~i~~~ 338 (1032)
+++|..+++++..||.+++..+.+.++|.|+..|+.++.+|+.|..++.+ +++.|..++..|..|+..+|++...|..+
T Consensus 3 L~~f~~~~~~l~~Wl~~ke~~l~~~~~g~dl~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~ 82 (218)
T 3edu_A 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEW 82 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 57899999999999999999998889999999999999999999999998 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhh
Q psy6936 339 RAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 418 (1032)
Q Consensus 339 ~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~ 418 (1032)
++.|+.+|..|...+..|...|..+..+++|..++.++..||.+.+..+. .+++.|+.+++.++.+|+.|+.+|..+.+
T Consensus 83 ~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~F~~~~~e~~~Wl~ek~~~l~-~~~g~dl~~v~~l~~~h~~~e~dL~~~~~ 161 (218)
T 3edu_A 83 KDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGV 161 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999884 55778999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 419 SFRGTADAGQSLLDRNHY-AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL 472 (1032)
Q Consensus 419 ~~~~l~~~~~~L~~~~~~-~~~~i~~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~ 472 (1032)
.+..+...|..|+...|+ .++.|..++..|..+|..|...+..|...|+.++.+
T Consensus 162 ~v~~l~~~a~~L~~~~~~~~a~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~ 216 (218)
T 3edu_A 162 QVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 216 (218)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999987653 578899999999999999999999999999887643
No 23
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=99.86 E-value=5e-20 Score=191.16 Aligned_cols=222 Identities=19% Similarity=0.302 Sum_probs=199.2
Q ss_pred HHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhccccc-CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Q psy6936 143 EKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEF-GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLE 221 (1032)
Q Consensus 143 ~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~-~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~ 221 (1032)
.|..+|+.. ..+|...+..+..||.+++..+.+.++ |.|+..|+..+++|+.|..+|..+.+.+..+...|..|+..
T Consensus 7 ~R~~kLe~l--~~~F~~~~~e~~~Wl~e~e~~l~~~~~~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~ 84 (250)
T 1quu_A 7 RRLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNEL 84 (250)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666665 578999999999999999999998777 99999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHhHHHHHHHHHHHhhhcCccccCCCHHHH
Q psy6936 222 GHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQ--------RFNRDADETVAWIAEKDAVLSSDEYGRDLASV 293 (1032)
Q Consensus 222 ~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~~~--------~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~ 293 (1032)
++++.+.|..++..|+.+|+.|...+..|+..|+.++... +|..+++.+..||.+++..+.+.++|.|++.+
T Consensus 85 ~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v 164 (250)
T 1quu_A 85 DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEI 164 (250)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTH
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHH
Confidence 9999999999999999999999999999999999997665 89999999999999999999887889999999
Q ss_pred HHHHHHhhhHHHHHHHhH---HHHHHHHHHHHHhhhcCCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 294 QTLQRKHEGVERDLAALE---DKVSTLGAEADRLCGIHSD----HGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYL 366 (1032)
Q Consensus 294 ~~~l~~~~~l~~ei~~~~---~~l~~l~~~~~~L~~~~~~----~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~ 366 (1032)
+.++.+|+.|..++...+ +.|..+...+..|+..+++ +.+.+...+..|..+|..|...+..|...|..++..
T Consensus 165 ~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~ 244 (250)
T 1quu_A 165 QSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELAR 244 (250)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997666665 5566667777888776543 456678899999999999999999999999988753
No 24
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=99.86 E-value=4.9e-20 Score=191.23 Aligned_cols=220 Identities=18% Similarity=0.324 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC--CCChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q psy6936 38 SKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES--YKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQ 115 (1032)
Q Consensus 38 ~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~--~~~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~ 115 (1032)
.|..+|+.+ +.+|...++++..||.+++..+.+.. +.|+..|+.++++|++|..++.++++.+..+...|..|+..
T Consensus 7 ~R~~kLe~l--~~~F~~~~~e~~~Wl~e~e~~l~~~~~~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~ 84 (250)
T 1quu_A 7 RRLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNEL 84 (250)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHTTTHHHHHHCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666665 67899999999999999999888654 46899999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH--------HHHHHhHHHHHhHHhhhhhhcccccCCCHHHH
Q psy6936 116 NHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLV--------QFIRQCDEVMFWINDKEAFVTADEFGADLEHV 187 (1032)
Q Consensus 116 ~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~~~--------~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~ 187 (1032)
++++++.|..++..|..+|+.|...+..|...|++++... +|...++.+..||.+++..+.+..+|.|++.+
T Consensus 85 ~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v 164 (250)
T 1quu_A 85 DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEI 164 (250)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTH
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHH
Confidence 9999999999999999999999999999999999998765 89999999999999999999888889999999
Q ss_pred HHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHcCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy6936 188 EVLQRKFDEFQKDMASQE---YRVTEVNQLADKLVLEGHP----ERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHE 259 (1032)
Q Consensus 188 ~~~l~~~~~l~~~l~~~~---~~l~~l~~~~~~l~~~~~~----~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~ 259 (1032)
+.++++|+.|..++.... ..+..+...+..|+..+++ +.|.|...+..|+.+|..|...+..|...|+.++.
T Consensus 165 ~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~ 243 (250)
T 1quu_A 165 QSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELA 243 (250)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997766665 5555566777888876664 56788889999999999999999999999998753
No 25
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=99.84 E-value=1.2e-20 Score=191.61 Aligned_cols=201 Identities=16% Similarity=0.284 Sum_probs=164.5
Q ss_pred HHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHH
Q psy6936 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEE 235 (1032)
Q Consensus 156 ~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~ 235 (1032)
.|...+.++..||.+++..+.+.++|.|+.+|+.++++|+.|..+|..+.+.|..+...+..+. .+..+.|...+..
T Consensus 24 ~~~~~~~~l~~Wl~e~e~~l~s~d~g~Dl~~v~~ll~kh~~~e~ei~~~~~~v~~~~~~~~~~~---~~~~~~i~~~~~~ 100 (224)
T 2iak_A 24 VNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMT---APLKLSYTDKLHR 100 (224)
T ss_dssp HHC-CHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCC---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhHHHHHHHHH
Confidence 4455589999999999999999999999999999999999999999999999998876554442 2456789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHH
Q psy6936 236 LSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVS 315 (1032)
Q Consensus 236 l~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~ 315 (1032)
|+.+|..|...+..|...|+ .+.+|..+++++..||.+++..+.+.++|.++..|..++.+|+.|+.+|.++++.|.
T Consensus 101 l~~~~~~L~~~~~~R~~~Le---~l~~F~~~~~~~~~Wi~eke~~~~s~d~g~~l~~v~~L~~kh~~l~~el~~~~~~v~ 177 (224)
T 2iak_A 101 LESQYAKLLNTSRNQERHLD---TLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIK 177 (224)
T ss_dssp HHHHHHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCC---------------CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999 788999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 316 TLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDE 362 (1032)
Q Consensus 316 ~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~ 362 (1032)
.|...|+.|+..+++++..|..+++.|..+|..|...+..|...|++
T Consensus 178 ~v~~~g~~L~~~~h~~~~~I~~~~~~l~~~W~~L~~l~~~R~~~L~~ 224 (224)
T 2iak_A 178 AVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224 (224)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999899999999999999999999999999988763
No 26
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=99.84 E-value=7.4e-20 Score=183.10 Aligned_cols=200 Identities=16% Similarity=0.254 Sum_probs=185.5
Q ss_pred HHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q psy6936 157 FIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEEL 236 (1032)
Q Consensus 157 f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l 236 (1032)
.+..++++..||.+++..+.+.++|.|+.+++.++++|+.|..+|..+.+.|..+...+..|... +.+.|..++..|
T Consensus 10 ~~r~~~dl~~Wl~e~~~~l~s~d~G~Dl~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~---~~~~i~~rl~~l 86 (210)
T 3pdy_A 10 TLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPA---TRGAYRDCLGRL 86 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHH---HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc---chHHHHHHHHHH
Confidence 36678999999999999999999999999999999999999999999999999999888776432 234699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHH
Q psy6936 237 SEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316 (1032)
Q Consensus 237 ~~rw~~l~~~~~~r~~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~ 316 (1032)
..+|..|...+..|...|+ .+.+|..+++.+..||.+++..+.+.++|.+...+...+.+|+.|+.++..+++.|..
T Consensus 87 ~~~~~~L~~~a~~R~~~L~---~L~~f~~~~~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~ 163 (210)
T 3pdy_A 87 DLQYAKLLNSSKARLRSLE---SLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 163 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999 6789999999999999999999988889999899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDE 362 (1032)
Q Consensus 317 l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~ 362 (1032)
|+..|+.|+..+++++..|..+++.|+.+|..|...+..+..+|.+
T Consensus 164 l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~~L~~L~~~~e~hLk~ 209 (210)
T 3pdy_A 164 LQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 209 (210)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999887754
No 27
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Probab=99.83 E-value=2.9e-20 Score=188.79 Aligned_cols=200 Identities=16% Similarity=0.251 Sum_probs=162.8
Q ss_pred HHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHHHhhh
Q psy6936 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIE 794 (1032)
Q Consensus 715 ~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~L~~ 794 (1032)
..|.+.+.++..||..++..|.+.++|.|+.+++.++++|+.|+.+|..+.++|..+ ...+..+..
T Consensus 23 ~~~~~~~~~l~~Wl~e~e~~l~s~d~g~Dl~~v~~ll~kh~~~e~ei~~~~~~v~~~--------------~~~~~~~~~ 88 (224)
T 2iak_A 23 EVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEA--------------KISEIQMTA 88 (224)
T ss_dssp HHHC-CHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHH--------------HHHGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhccc
Confidence 456666999999999999999999999999999999999999999999999999877 443333322
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhhhhccccCCC-CcchhHHHHHhh
Q psy6936 795 GQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKH 873 (1032)
Q Consensus 795 ~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~-~~~~l~~~l~~~ 873 (1032)
+.+..|..++..|..+|..|+..+..|+..|+ .+++|..+++++..||.++++.+....+| +...++..+.+|
T Consensus 89 ---~~~~~i~~~~~~l~~~~~~L~~~~~~R~~~Le---~l~~F~~~~~~~~~Wi~eke~~~~s~d~g~~l~~v~~L~~kh 162 (224)
T 2iak_A 89 ---PLKLSYTDKLHRLESQYAKLLNTSRNQERHLD---TLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYH 162 (224)
T ss_dssp ---THHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCCC---------------C
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHH
Confidence 34577999999999999999999999999999 67899999999999999999988777666 577889999999
Q ss_pred HHHHHHHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 874 QNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQ 934 (1032)
Q Consensus 874 ~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~ 934 (1032)
+.|+.+|..+++.+..|...|+.|+..++|+++.|..+++.|+.+|+.|...+..|...|+
T Consensus 163 ~~l~~el~~~~~~v~~v~~~g~~L~~~~h~~~~~I~~~~~~l~~~W~~L~~l~~~R~~~L~ 223 (224)
T 2iak_A 163 AELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQ 223 (224)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999998886
No 28
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=99.83 E-value=2.7e-19 Score=179.06 Aligned_cols=199 Identities=17% Similarity=0.315 Sum_probs=183.6
Q ss_pred HHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q psy6936 52 FKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEEL 130 (1032)
Q Consensus 52 f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L 130 (1032)
..+.++++..||.++...+++..+ .|+.+++.++++|+.|..+|..+++.|..|...+..+...+ ...|..++..|
T Consensus 10 ~~r~~~dl~~Wl~e~~~~l~s~d~G~Dl~~ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~---~~~i~~rl~~l 86 (210)
T 3pdy_A 10 TLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPAT---RGAYRDCLGRL 86 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHH---HHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---hHHHHHHHHHH
Confidence 456789999999999998887666 68999999999999999999999999999999888775432 34699999999
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy6936 131 HRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTE 210 (1032)
Q Consensus 131 ~~~w~~L~~~~~~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~ 210 (1032)
..+|..|...+..|...|+ .+++|+..++.+..||.+.+..+.+.++|.++.++...+.+|+.|..+|..+...+..
T Consensus 87 ~~~~~~L~~~a~~R~~~L~---~L~~f~~~~~~~~~Wl~eke~~~~s~d~g~~~~~v~~l~~k~~~f~~el~~~~~~v~~ 163 (210)
T 3pdy_A 87 DLQYAKLLNSSKARLRSLE---SLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKE 163 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccccCCCchhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999 5689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6936 211 VNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFG 256 (1032)
Q Consensus 211 l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~ 256 (1032)
++..|+.|+..++|..+.|...++.|+.+|+.|...+..+...|..
T Consensus 164 l~~~~~~Ll~~~h~~~~~I~~~~~~l~~~W~~L~~L~~~~e~hLk~ 209 (210)
T 3pdy_A 164 LQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 209 (210)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999887753
No 29
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=99.79 E-value=4.6e-18 Score=166.75 Aligned_cols=169 Identities=36% Similarity=0.618 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHhhHhHHHHhhhhHHHHHHhhhhhhhcCCCChHHHH
Q psy6936 363 SYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIR 442 (1032)
Q Consensus 363 ~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~~~~l~~~~~~L~~~~~~~~~~i~ 442 (1032)
+..++.|...+.++..||..++..+.+.++|.|+.+++.++.+|+.+..+|..+.+.+..+...|..|+..++|..+.|.
T Consensus 3 ~~dl~~F~~~~~dl~~Wl~~~~~~l~~~e~~~d~~~~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~ 82 (185)
T 3lbx_B 3 TADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIR 82 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44678999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy6936 443 EKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQ 522 (1032)
Q Consensus 443 ~~l~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~WL~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~ 522 (1032)
..+..|..+|..|...|..|+.+|+.++.++.|..++..+..||...+..|.+.++|.++++++.++++|+.|+..+..+
T Consensus 83 ~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~d~~~~~~Wl~~~e~~L~~~~~g~sl~~ve~LlkkH~~fe~~l~~~ 162 (185)
T 3lbx_B 83 EKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASW 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy6936 523 EEKIKALDE 531 (1032)
Q Consensus 523 ~~~~~~l~~ 531 (1032)
...+..|..
T Consensus 163 ~e~i~~L~~ 171 (185)
T 3lbx_B 163 AERFAALEK 171 (185)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhh
Confidence 999887765
No 30
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=99.79 E-value=3.6e-18 Score=167.50 Aligned_cols=167 Identities=37% Similarity=0.618 Sum_probs=158.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCChHHHH
Q psy6936 605 SYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIR 684 (1032)
Q Consensus 605 ~~~~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~~~~i~ 684 (1032)
+..+++|+..+.++..||..++..+.+.++|.|+..++..+.+|+.+..+|..+.+.|..+...|+.|+..++++++.|.
T Consensus 3 ~~dl~~F~~~~~dl~~Wl~~~~~~l~~~e~~~d~~~~e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~ 82 (185)
T 3lbx_B 3 TADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIR 82 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34567899999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHH
Q psy6936 685 EKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQ 764 (1032)
Q Consensus 685 ~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 764 (1032)
.++..|..+|..|...|..|+.+|++++..+.|..++..+..||...|..|...++|.+++.++.++++|+.|...+.++
T Consensus 83 ~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~d~~~~~~Wl~~~e~~L~~~~~g~sl~~ve~LlkkH~~fe~~l~~~ 162 (185)
T 3lbx_B 83 EKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASW 162 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHh
Q psy6936 765 EEKIKAL 771 (1032)
Q Consensus 765 ~~~~~~l 771 (1032)
.++|..|
T Consensus 163 ~e~i~~L 169 (185)
T 3lbx_B 163 AERFAAL 169 (185)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 31
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=173.09 Aligned_cols=183 Identities=14% Similarity=0.190 Sum_probs=163.8
Q ss_pred HHHHHHHHhHHhhhhhHHHHHHHhhhhhccccCCCCcc-hhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCCCc
Q psy6936 827 ILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYLDPT-NLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYAS 905 (1032)
Q Consensus 827 ~Le~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~-~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~~ 905 (1032)
+|..+..+++|+.++++...||.++++......+++.. .+..++.+|++|+.||.+|++.+..|...|+.|+..++|++
T Consensus 3 rL~~l~~L~qF~~d~~~e~~Wi~Eke~~~~~~D~~~~~~~l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~~ 82 (283)
T 3pe0_A 3 HMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPAR 82 (283)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCh
Confidence 46666778899999999999999999876555565543 48889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhHHHH---HhhhccccCCCChHHHHHHHHHHHHH
Q psy6936 906 DKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEI---EGQLMSEDYGKDLTSVQNLQKKHALL 982 (1032)
Q Consensus 906 ~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~~~~~~~~~~~l~~wL~~~---e~~L~~~~~~~~~~~~~~~l~~~~~l 982 (1032)
+.|+.+++.|+..|+.|...+..|...|+.+...++|..+.+++..||..+ ...+.+.++|.|+.+++.++++|+.|
T Consensus 83 ~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~qF~~da~e~e~Wl~~~~e~~~~~~s~d~g~d~~s~~~LLkkh~~l 162 (283)
T 3pe0_A 83 PTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDE 162 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999844 44456789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy6936 983 EADVASHLDRIESVKAATEQFLERGHF 1009 (1032)
Q Consensus 983 ~~ei~~~~~~v~~l~~~~~~l~~~~~~ 1009 (1032)
+.+|..+...|..|...|..|...++.
T Consensus 163 e~~l~~~~~~i~~L~~~a~~l~~l~~r 189 (283)
T 3pe0_A 163 KEQLNEYKGHLSGLAKRAKAVVQLKPR 189 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999865553
No 32
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=99.75 E-value=1.6e-17 Score=157.31 Aligned_cols=148 Identities=47% Similarity=0.702 Sum_probs=135.0
Q ss_pred ccchhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCCChhhHHHH
Q psy6936 5 TVKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYKETTNLQAK 84 (1032)
Q Consensus 5 ~~~~~~~~~~~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~~~~~~~ 84 (1032)
.-+|++|.+.++.|+.++..|..||..|...+..|..+|+.+..+++|..+++++..||.++...+.++.+.|+..++.+
T Consensus 14 ~~~~~k~~e~a~~I~~r~~~l~~rw~~L~~~a~~R~~~Le~s~~lq~F~~d~~el~~Wi~ek~~~a~~~~~~d~~~v~~l 93 (161)
T 3lbx_A 14 ESSGPKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGK 93 (161)
T ss_dssp --------CCSTTGGGHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCHHHH
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCHHHHHHH
Confidence 35899999999999999999999999999999999999999998999999999999999999988888777899999999
Q ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy6936 85 IQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQAL 152 (1032)
Q Consensus 85 l~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l 152 (1032)
+++|++|+++|.++++.+..+...|..|+..+++.++.|+.++..|+..|+.|...+..|...|++++
T Consensus 94 l~kH~afe~El~a~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eAl 161 (161)
T 3lbx_A 94 YQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999998753
No 33
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=99.74 E-value=4.2e-17 Score=152.75 Aligned_cols=144 Identities=67% Similarity=0.974 Sum_probs=131.7
Q ss_pred cchhcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCCChhhHHHHH
Q psy6936 6 VKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYKETTNLQAKI 85 (1032)
Q Consensus 6 ~~~~~~~~~~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~~~~~~~l 85 (1032)
-+|++|.++++.|+.++..|..+|..|...+..|..+|+.+..++.|..+++++..||.+++..+.++.++|+..+...+
T Consensus 5 ~~~~~~~~~a~~I~~r~~~l~~r~~~L~~~a~~R~~~Le~s~~l~~F~~d~~el~~Wi~ek~~~~~~~~~~d~~~v~~~l 84 (149)
T 3f31_A 5 PSGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKL 84 (149)
T ss_dssp --------CTTHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSCSSSCHHHHH
T ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHH
Confidence 48999999999999999999999999999999999999999889999999999999999999988887788999999999
Q ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy6936 86 QKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQ 149 (1032)
Q Consensus 86 ~~~~~l~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~ 149 (1032)
++|++|+.+|.++++.|..+...|..|+..++++++.|+.++..|+..|+.|...+.+|...|.
T Consensus 85 ~kH~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl~~l~~~W~~L~~~~~~r~~~L~ 148 (149)
T 3f31_A 85 QKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLL 148 (149)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999988875
No 34
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=99.73 E-value=3.3e-16 Score=162.47 Aligned_cols=181 Identities=15% Similarity=0.247 Sum_probs=161.7
Q ss_pred HHHHhhHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCC
Q psy6936 252 EKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDH 331 (1032)
Q Consensus 252 ~~Le~~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~ 331 (1032)
.+|.....+++|..++++...||.+.+......+++.....+...+++|+.|+.||.++++.|+.|...|+.|+..++++
T Consensus 2 ~rL~~l~~L~qF~~d~~~e~~Wi~Eke~~~~~~D~~~~~~~l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp~ 81 (283)
T 3pe0_A 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPA 81 (283)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC
Confidence 35677778899999999999999999988655677655545888899999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhccccccCCHHHHHHHHHHHHh
Q psy6936 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVS---DMKAIISADELAKDVAGAEALLERHQE 408 (1032)
Q Consensus 332 ~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~f~~~~~~l~~Wl~---~~e~~l~~~~~~~d~~~~~~~l~~~~~ 408 (1032)
+..|..+++.|...|..|...+..|..+|..+..+++|+.+++++..||. +....+.+++.+.|..+++.++++|+.
T Consensus 82 ~~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~qF~~da~e~e~Wl~~~~e~~~~~~s~d~g~d~~s~~~LLkkh~~ 161 (283)
T 3pe0_A 82 RPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQD 161 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888 555556777888999999999999999
Q ss_pred hHhHHHHhhhhHHHHHHhhhhhhh
Q psy6936 409 HKGEIDAREDSFRGTADAGQSLLD 432 (1032)
Q Consensus 409 l~~~l~~~~~~~~~l~~~~~~L~~ 432 (1032)
++.+|..+...+..+...+..|..
T Consensus 162 le~~l~~~~~~i~~L~~~a~~l~~ 185 (283)
T 3pe0_A 162 EKEQLNEYKGHLSGLAKRAKAVVQ 185 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988764
No 35
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=99.73 E-value=3.3e-17 Score=155.15 Aligned_cols=139 Identities=37% Similarity=0.636 Sum_probs=133.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhhhhccccCCCCcchhHHHHHhhHHHHH
Q psy6936 799 AADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQ 878 (1032)
Q Consensus 799 ~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~l~~~l~~~~~l~~ 878 (1032)
+++.|..++..|..||..|...+..|+..|+.+..+++|+.+++++..||.++...+.+++++|+..++.++.+|++|+.
T Consensus 23 ~a~~I~~r~~~l~~rw~~L~~~a~~R~~~Le~s~~lq~F~~d~~el~~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~ 102 (161)
T 3lbx_A 23 TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEA 102 (161)
T ss_dssp CSTTGGGHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999999998888788999999999999999999
Q ss_pred HHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 879 ELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEAS 937 (1032)
Q Consensus 879 el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~ 937 (1032)
+|.++.+.+..|...|+.|+..+|+.++.|+.+++.|+.+|+.|...+..|..+|++|+
T Consensus 103 El~a~~~~~~~l~~~g~~Li~~~~~~~~~I~~rl~eL~~~W~~L~~~~~~R~~~L~eAl 161 (161)
T 3lbx_A 103 EVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRAL 161 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999998874
No 36
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=99.71 E-value=1.5e-16 Score=148.97 Aligned_cols=136 Identities=44% Similarity=0.738 Sum_probs=130.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHhhhhhccccCCCCcchhHHHHHhhHHHHH
Q psy6936 799 AADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQ 878 (1032)
Q Consensus 799 ~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le~~~~~~~f~~~~~~l~~Wl~~~~~~l~~~~~~~~~~l~~~l~~~~~l~~ 878 (1032)
.++.|..++..|..||..|+..+..|+..|+.+..+++|..+++++..||.++...+.+++++|+..++.++.+|++|+.
T Consensus 13 ~a~~I~~r~~~l~~r~~~L~~~a~~R~~~Le~s~~l~~F~~d~~el~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~ 92 (149)
T 3f31_A 13 TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEA 92 (149)
T ss_dssp CTTHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHH
Confidence 45779999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 879 ELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQ 934 (1032)
Q Consensus 879 el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~~~~L~ 934 (1032)
+|.++.+.++.|...|+.|+..+|++++.|+.+++.|+.+|+.|...+.+|..+|.
T Consensus 93 El~a~~~~l~~v~~~g~~Li~~~~~~~~~I~~rl~~l~~~W~~L~~~~~~r~~~L~ 148 (149)
T 3f31_A 93 EVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLLEKMREKGIKLL 148 (149)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999885
No 37
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=99.33 E-value=8.9e-12 Score=112.59 Aligned_cols=106 Identities=17% Similarity=0.357 Sum_probs=95.9
Q ss_pred HHhHHhhhhhHHHHHHHhhhhhccc-c-CCCCcchhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCCCc---hH
Q psy6936 833 KFQQFERDCDETKSWVTEKLKFAND-D-NYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYAS---DK 907 (1032)
Q Consensus 833 ~~~~f~~~~~~l~~Wl~~~~~~l~~-~-~~~~~~~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~~---~~ 907 (1032)
.+++|..+++++..||.+++..+.. . ...++..++.++.+|+.|..+|..+++.|+.|+..|+.|+..+++.+ ..
T Consensus 3 ~L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~ 82 (119)
T 3uun_A 3 NLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETE 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5678999999999999998887653 3 34588999999999999999999999999999999999998876643 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 908 IRQRMEQIVHLWESLATATEKKGNKLQEASQ 938 (1032)
Q Consensus 908 i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~~ 938 (1032)
|+.+++.|+.+|+.|+..+.+|..+|+.++.
T Consensus 83 i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~ 113 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVASMEKQSNLHRVLM 113 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999994
No 38
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=99.32 E-value=2.3e-11 Score=109.51 Aligned_cols=107 Identities=17% Similarity=0.325 Sum_probs=98.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhcCc-cccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCC---chh
Q psy6936 259 EIQRFNRDADETVAWIAEKDAVLSS-DEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDH---GDQ 334 (1032)
Q Consensus 259 ~~~~f~~~~~~~~~Wl~~~e~~l~~-~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~---~~~ 334 (1032)
.+..|+..++++..||.+++..|.. .++|.|+..++.++.+|+.|..+|..+++.|+.++..|..|+..+++. +..
T Consensus 3 ~L~~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~ 82 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFE 82 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 4678999999999999999998865 578999999999999999999999999999999999999999876543 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 335 IQAKRAEIVEYWERLTGKAKGRKQKLDESYY 365 (1032)
Q Consensus 335 i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~ 365 (1032)
|+.++..|+.+|..|...+..|..+|+.++.
T Consensus 83 i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~ 113 (118)
T 3uul_A 83 IQEQMTLLNARWEALRVESMERQSRLHDALM 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 39
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.31 E-value=9.4e-12 Score=150.49 Aligned_cols=227 Identities=19% Similarity=0.314 Sum_probs=184.9
Q ss_pred HHhHhHHHHHHHHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHH-HHH
Q psy6936 143 EKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQ----EYRVTEVNQL-ADK 217 (1032)
Q Consensus 143 ~r~~~L~~~l~~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~----~~~l~~l~~~-~~~ 217 (1032)
.|...|.......+|...+..+..|+......+....++.++..++..+..++.|..+.... ...+..+... ...
T Consensus 757 ~R~~~l~~~~~~iQY~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~fk~~~kp~r~~ek~~Le~l~~~iqtk 836 (1010)
T 1g8x_A 757 AREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTK 836 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH
Confidence 34445666656678999999999999999999888889999999999999999998864321 1122222122 222
Q ss_pred HHHcC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHhHHHHHHHHHHHhhhcCccccCC
Q psy6936 218 LVLEG-HPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHE--------IQRFNRDADETVAWIAEKDAVLSSDEYGR 288 (1032)
Q Consensus 218 l~~~~-~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~--------~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~ 288 (1032)
+...+ +|-.+.....+++|+..|..|.....+|...|...+. ..+|...++.+..|+.+++..|.+.++|.
T Consensus 837 lrl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~eRe~~L~~el~Rqe~L~~L~qkF~rka~~~e~Wl~ek~~~l~s~d~g~ 916 (1010)
T 1g8x_A 837 LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 916 (1010)
T ss_dssp HHTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSCCSCC
T ss_pred HHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 22222 2323334456789999999999999999999888632 36799999999999999999999889999
Q ss_pred CHHHHHHHHHHhhhHHHHHHHhHHHHH-HHHHHHHHhhhcCCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 289 DLASVQTLQRKHEGVERDLAALEDKVS-TLGAEADRLCGIHSDHGDQIQAKRAEIV-EYWERLTGKAKGRKQKLDESYYL 366 (1032)
Q Consensus 289 d~~~~~~~l~~~~~l~~ei~~~~~~l~-~l~~~~~~L~~~~~~~~~~i~~~~~~l~-~~w~~l~~~~~~r~~~L~~~~~~ 366 (1032)
|+..++.++++|+.|+.+|..++..+. .|...|+.|...++++.+.|..+.+.|. .+|+.|...+..|+..|+++++.
T Consensus 917 dL~~Vqal~KKhea~e~dl~a~e~ri~~~l~~~a~eL~~~~y~~~~~I~~R~~~L~~~~W~~L~~la~~Rk~~Le~~lq~ 996 (1010)
T 1g8x_A 917 SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996 (1010)
T ss_dssp STTTTGGGTTSHHHHTTTTTHHHHTHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTHHHHHHHHTHHHHTTTTTTTST
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999889999999999996 89999999999999999988865
Q ss_pred HHH
Q psy6936 367 HRF 369 (1032)
Q Consensus 367 ~~f 369 (1032)
+++
T Consensus 997 ~~~ 999 (1010)
T 1g8x_A 997 LQK 999 (1010)
T ss_dssp TTT
T ss_pred HHH
Confidence 443
No 40
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=99.30 E-value=4.2e-11 Score=107.79 Aligned_cols=106 Identities=22% Similarity=0.335 Sum_probs=98.1
Q ss_pred HHHHHHHHhHHHHHhHHhhhhhhcc-cccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCC---chH
Q psy6936 153 VLVQFIRQCDEVMFWINDKEAFVTA-DEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPE---RET 228 (1032)
Q Consensus 153 ~~~~f~~~~~~~~~wl~~~e~~l~~-~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~---~~~ 228 (1032)
.+..|...++++..||.+++..+.+ .++|.|++.++.++.+|+.|..+|..+++.|+.++..|..|+..+++. ...
T Consensus 3 ~L~~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~ 82 (118)
T 3uul_A 3 DLDSYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFE 82 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Confidence 3568999999999999999999877 688999999999999999999999999999999999999999877654 347
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy6936 229 IVRRKEELSEAWMRLKQLALMRQEKLFGAH 258 (1032)
Q Consensus 229 i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~ 258 (1032)
|+.++..|+.+|+.|...+.+|...|+.++
T Consensus 83 i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL 112 (118)
T 3uul_A 83 IQEQMTLLNARWEALRVESMERQSRLHDAL 112 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999885
No 41
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=99.30 E-value=4.2e-11 Score=108.13 Aligned_cols=108 Identities=15% Similarity=0.272 Sum_probs=99.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhch-hhhccCHHHHHHHHHHHHhhHHHHHhchhhHHHHHHHHHhHhhcCCCC---hHH
Q psy6936 607 YLHRFLADYRDLISWVSDMKAIISA-DELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA---ADD 682 (1032)
Q Consensus 607 ~~~~f~~~~~~l~~Wl~~~e~~l~~-~~~~~~~~~~~~~l~~~~~l~~el~~~~~~~~~l~~~g~~L~~~~~~~---~~~ 682 (1032)
.+++|...+.++..||.+++..+.. .+++.++..++.++.+|+.|..+|..+++.++.+...|..|+..++++ .+.
T Consensus 3 ~L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~ 82 (119)
T 3uun_A 3 NLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETE 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4578999999999999999999876 568889999999999999999999999999999999999999877654 357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 683 IREKLRNLENDKTHLLTLWEERRILYEQCMDL 714 (1032)
Q Consensus 683 i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~ 714 (1032)
|+.++..|+.+|+.|...+..|..+|+.++..
T Consensus 83 i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~ 114 (119)
T 3uun_A 83 VQEQMNLLNSRWECLRVASMEKQSNLHRVLMD 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865
No 42
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.25 E-value=4.2e-11 Score=144.88 Aligned_cols=228 Identities=15% Similarity=0.259 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHh----hHHHHHHHHHHHHHHH
Q psy6936 39 KREKLEDSRRFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAA----HSNAIVVLDNTGKEMI 113 (1032)
Q Consensus 39 r~~~L~~~~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~----~~~~v~~l~~~~~~L~ 113 (1032)
|..+|.......+|...+..+..|+..+...+....+ .++..++..+..++.+..+... ....+..+.......+
T Consensus 758 R~~~l~~~~~~iQY~~~a~~L~~WIr~kqa~l~~r~~~~sl~~IQ~ll~~f~~fk~~~kp~r~~ek~~Le~l~~~iqtkl 837 (1010)
T 1g8x_A 758 REQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKL 837 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHHH
Confidence 4445555555567899999999999998888877666 5688999999999998875432 2333444444433322
Q ss_pred h-cCC-CCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH--------HHHHHHHhHHHHHhHHhhhhhhcccccCCC
Q psy6936 114 N-QNH-FASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALV--------LVQFIRQCDEVMFWINDKEAFVTADEFGAD 183 (1032)
Q Consensus 114 ~-~~~-~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~--------~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d 183 (1032)
. .+. +..+.....+..|+..|..|.....+|...|...+. ..+|...++.+..||.+++..+.+.++|.|
T Consensus 838 rl~~r~~~~p~~gl~~~dL~~~W~~Le~ae~eRe~~L~~el~Rqe~L~~L~qkF~rka~~~e~Wl~ek~~~l~s~d~g~d 917 (1010)
T 1g8x_A 838 RLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDS 917 (1010)
T ss_dssp HTTTCCCCCCCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSCCSCCS
T ss_pred HhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 2 221 212223345789999999999999999999987643 268999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHH
Q psy6936 184 LEHVEVLQRKFDEFQKDMASQEYRVT-EVNQLADKLVLEGHPERETIVRRKEELS-EAWMRLKQLALMRQEKLFGAHEIQ 261 (1032)
Q Consensus 184 ~~~~~~~l~~~~~l~~~l~~~~~~l~-~l~~~~~~l~~~~~~~~~~i~~~~~~l~-~rw~~l~~~~~~r~~~Le~~~~~~ 261 (1032)
+..++..+++|+.|..+|..++..+. .+...|+.|.+..+++.+.|..+...|. .+|+.|...+..|+..|+++++..
T Consensus 918 L~~Vqal~KKhea~e~dl~a~e~ri~~~l~~~a~eL~~~~y~~~~~I~~R~~~L~~~~W~~L~~la~~Rk~~Le~~lq~~ 997 (1010)
T 1g8x_A 918 ITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERL 997 (1010)
T ss_dssp TTTTGGGTTSHHHHTTTTTHHHHTHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTHHHHHHHHTHHHHTTTTTTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 8999999999998999999999999996 899999999999999999987666
Q ss_pred HHHHh
Q psy6936 262 RFNRD 266 (1032)
Q Consensus 262 ~f~~~ 266 (1032)
++..+
T Consensus 998 ~~~~~ 1002 (1010)
T 1g8x_A 998 QKIED 1002 (1010)
T ss_dssp TTTTS
T ss_pred HHHHH
Confidence 65443
No 43
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=99.19 E-value=7.8e-10 Score=109.65 Aligned_cols=200 Identities=17% Similarity=0.249 Sum_probs=153.6
Q ss_pred HHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHH---HHcCCCCchHHH
Q psy6936 155 VQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMA-SQEYRVTEVNQLADKL---VLEGHPERETIV 230 (1032)
Q Consensus 155 ~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~-~~~~~l~~l~~~~~~l---~~~~~~~~~~i~ 230 (1032)
.+|...+.++..||..+...+....+|.++..++.++.+|..|+..-. ........|...-..| +..+....| =.
T Consensus 14 ~eYe~~as~Ll~WI~~~~~~l~~r~f~~sl~~vq~~l~~f~~fr~~ekppk~~EK~~Le~ll~~lqtklr~~~~~pp-eg 92 (235)
T 2odv_A 14 QEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVP-PG 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-CCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CC
Confidence 578889999999999999999999999999999999999999988642 2212222222222211 222221111 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH-------H-HHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhh
Q psy6936 231 RRKEELSEAWMRLKQLALMRQEKLFGAH-------E-IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEG 302 (1032)
Q Consensus 231 ~~~~~l~~rw~~l~~~~~~r~~~Le~~~-------~-~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~ 302 (1032)
-.+.+|+..|..|.....+|...|...+ . ...|..++.....||..+...|. .++ .++. +...+++|..
T Consensus 93 ~~~~di~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~-~d~-~~l~-~~~a~k~~e~ 169 (235)
T 2odv_A 93 YHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQ-SDV-RLLA-AGKVPQRAGE 169 (235)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHTT-TTCCCSCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-hhcc-hhHHHHHHHH
Confidence 3477999999999999999998888773 1 25699999999999999998883 222 1111 3334677999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 303 VERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQ 358 (1032)
Q Consensus 303 l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~ 358 (1032)
|..+|..++..|..|...++.|....++++..|..++..|..+|..|...+..|..
T Consensus 170 ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~~~~r~~ 225 (235)
T 2odv_A 170 VERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLK 225 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877753
No 44
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=99.18 E-value=1.9e-11 Score=107.33 Aligned_cols=105 Identities=23% Similarity=0.471 Sum_probs=99.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHHHhhhcCCCCchhHH
Q psy6936 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQ 336 (1032)
Q Consensus 257 ~~~~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~ 336 (1032)
++++..|..+++.+..||...+..+.+.++|.|+..|+.++++|+.|+.++..+..+|..|...|..|+..+++++..|.
T Consensus 2 ~~~lq~F~~d~~~~e~Wl~~~e~~l~~~d~g~~l~~v~~Llkkh~~fe~~~~~~~~~i~~l~~~a~~L~~~~h~~~~~I~ 81 (107)
T 2spc_A 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTVADQLIAQNHYASNLVD 81 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 46788999999999999999998888888999999999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 337 AKRAEIVEYWERLTGKAKGRKQKLD 361 (1032)
Q Consensus 337 ~~~~~l~~~w~~l~~~~~~r~~~L~ 361 (1032)
.+...|..+|..|...+..|+..|+
T Consensus 82 ~r~~~l~~~w~~L~~~~~~Rr~~L~ 106 (107)
T 2spc_A 82 EKRKQVLERWRHLKEGLIEKRSRLG 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998875
No 45
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=99.16 E-value=2.7e-11 Score=106.41 Aligned_cols=105 Identities=44% Similarity=0.680 Sum_probs=99.3
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhhhhHHHHHH
Q psy6936 711 CMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFAT 790 (1032)
Q Consensus 711 ~l~~~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 790 (1032)
++..+.|..++.++..||...|..|...++|.++..++.++++|+.|+.++..+..+|..+ ...|.
T Consensus 2 ~~~lq~F~~d~~~~e~Wl~~~e~~l~~~d~g~~l~~v~~Llkkh~~fe~~~~~~~~~i~~l--------------~~~a~ 67 (107)
T 2spc_A 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAAL--------------QTVAD 67 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
Confidence 4566899999999999999999999877899999999999999999999999999999999 99999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 791 KLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILE 829 (1032)
Q Consensus 791 ~L~~~~~~~~~~i~~~~~~l~~r~~~l~~~~~~r~~~Le 829 (1032)
.|+..+|++++.|..++..|..+|..|...+..|+..|+
T Consensus 68 ~L~~~~h~~~~~I~~r~~~l~~~w~~L~~~~~~Rr~~L~ 106 (107)
T 2spc_A 68 QLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998875
No 46
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=99.07 E-value=5.7e-09 Score=103.45 Aligned_cols=200 Identities=13% Similarity=0.181 Sum_probs=151.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHH-Hhh---HHHHHHHHHHHHHHHhcCCCCchHH
Q psy6936 49 FQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEV-AAH---SNAIVVLDNTGKEMINQNHFASEVI 123 (1032)
Q Consensus 49 ~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el-~~~---~~~v~~l~~~~~~L~~~~~~~~~~i 123 (1032)
+..|...+.++..|+..+...+.+..+ +++..++.++.+...|...- +.+ .+.+..+...-+.-+..+....+.
T Consensus 13 ~~eYe~~as~Ll~WI~~~~~~l~~r~f~~sl~~vq~~l~~f~~fr~~ekppk~~EK~~Le~ll~~lqtklr~~~~~ppe- 91 (235)
T 2odv_A 13 WQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAGQLKVPP- 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-CCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-
Confidence 358999999999999999998888777 57899999999998887542 222 122333333322222233211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHH--------HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHH
Q psy6936 124 RKRLEELHRLWELLLSKLAEKGMKLQQALV--------LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFD 195 (1032)
Q Consensus 124 ~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~--------~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~ 195 (1032)
--.+.+|+..|..|.....+|...|...+. ...|...++.+..||..++..+... + .++. +...+++|.
T Consensus 92 g~~~~di~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d-~-~~l~-~~~a~k~~e 168 (235)
T 2odv_A 92 GYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSD-V-RLLA-AGKVPQRAG 168 (235)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHTT-TTCCCSCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hhcc-hhHHHHHHH
Confidence 112679999999999999999999887642 2579999999999999999988422 1 1112 233467799
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 196 EFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQE 252 (1032)
Q Consensus 196 ~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~ 252 (1032)
.|..+|.++...|..+...++.|....+|+.+.|..++..|+.+|..|...+..|..
T Consensus 169 ~ie~dL~~~e~~i~~l~~~a~~L~~~~y~~a~~i~~r~~~l~~~w~~L~~~~~~r~~ 225 (235)
T 2odv_A 169 EVERDLDKADSMIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLK 225 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988899999999999999999999999877653
No 47
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=98.78 E-value=1.8e-10 Score=139.66 Aligned_cols=216 Identities=19% Similarity=0.327 Sum_probs=160.7
Q ss_pred HHHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHH---HcC--CCCch
Q psy6936 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQE-YRVTEVNQLADKLV---LEG--HPERE 227 (1032)
Q Consensus 154 ~~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~-~~l~~l~~~~~~l~---~~~--~~~~~ 227 (1032)
..+|...+..+..|+......+....++..+..++..+..+..++....... .....|......+. ... +|-.+
T Consensus 760 ~~eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekpp~~~ek~rLeal~~~iqtkLrl~~~~~y~p 839 (995)
T 2ycu_A 760 KSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVA 839 (995)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHCSSSCCCCCSSCSSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 3478888899999999988877766677778888888888877776643221 11222211111000 000 01123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHhHHHHHHHHHHHhhhcCccccCCCHHHHHHHHHH
Q psy6936 228 TIVRRKEELSEAWMRLKQLALMRQEKLFGAHE--------IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRK 299 (1032)
Q Consensus 228 ~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~~~--------~~~f~~~~~~~~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~ 299 (1032)
.....+.+|+.+|..|.....+|...|...+. ..+|..+++....||.+++..+.+.++|.|+..++.++++
T Consensus 840 ~~gl~~~~L~~~W~~L~~ae~er~~~L~~el~RlerL~~la~kf~~ka~~~e~Wl~eke~~l~s~d~g~dl~~vqallkK 919 (995)
T 2ycu_A 840 PAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKN 919 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGGCCCCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred chhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHH
Confidence 34556899999999999999999998876531 2579999999999999999999888889999999999999
Q ss_pred hhhHHHHHHHhHHHHH-HHHHHHHHhhhcCCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 300 HEGVERDLAALEDKVS-TLGAEADRLCGIHSDHGDQIQAKRAEI-VEYWERLTGKAKGRKQKLDESYYLHRF 369 (1032)
Q Consensus 300 ~~~l~~ei~~~~~~l~-~l~~~~~~L~~~~~~~~~~i~~~~~~l-~~~w~~l~~~~~~r~~~L~~~~~~~~f 369 (1032)
|+.|+.+|..++..+. .|...|+.|...++++.+.|..+...| .++|..|...+..|+..|++++..++.
T Consensus 920 hea~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~~a~~Rr~~L~~~~~~~q~ 991 (995)
T 2ycu_A 920 LEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQK 991 (995)
T ss_dssp HHHHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHSSSCCCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 999999999988877889999999999 699999999999999999998875443
No 48
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=98.65 E-value=1.4e-09 Score=131.88 Aligned_cols=213 Identities=16% Similarity=0.259 Sum_probs=154.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhhHHHHHhch-hhHHHHHHHHHhHh---hcC--CCChHHH
Q psy6936 610 RFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARE-DSFRGTADAGQSLL---DRN--HYAADDI 683 (1032)
Q Consensus 610 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~l~~el~~~~-~~~~~l~~~g~~L~---~~~--~~~~~~i 683 (1032)
.|...+.++..|+......+.....+.++..++..+..|..+........ .....+......+. ... ++-.+..
T Consensus 762 eYe~~a~~Ll~WIr~k~a~l~~r~~~~sl~~IQ~~ir~f~~fr~~ekpp~~~ek~rLeal~~~iqtkLrl~~~~~y~p~~ 841 (995)
T 2ycu_A 762 DYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPA 841 (995)
T ss_dssp HHHHHHHHHHHHTTTTTCCCSCHHHHHHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHCSSSCCCCCSSCSSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhcCCCCCcch
Confidence 67788888999998766555444556677788888888877776654211 11111211111111 000 0001223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHhhcHHHHHHHHHHHHhhhcCCcCCCCHHHHHHHHHhHH
Q psy6936 684 REKLRNLENDKTHLLTLWEERRILYEQCMD-------L-QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHE 755 (1032)
Q Consensus 684 ~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~-------~-~~f~~~~~~l~~WL~~~e~~L~~~~~~~~~~~~~~~l~~~~ 755 (1032)
.-.+..|..+|..|......|...|...+. . +.|...+...+.||.+.|..+.+.+.|.++..++.++++|+
T Consensus 842 gl~~~~L~~~W~~L~~ae~er~~~L~~el~RlerL~~la~kf~~ka~~~e~Wl~eke~~l~s~d~g~dl~~vqallkKhe 921 (995)
T 2ycu_A 842 GLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLE 921 (995)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGGCCCCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence 445799999999999999999888875542 2 68999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHHHHHH-HhhHHhhhhhhhhhhHHHHHHHhhhcCCCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 756 DFEKSLAAQEEKIK-ALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLL-LKRRAGLLEKSARRRAILEDSYK 833 (1032)
Q Consensus 756 ~~~~~l~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~i~~~~~~l-~~r~~~l~~~~~~r~~~Le~~~~ 833 (1032)
.|..++..+..++. .+ ...|+.|...++++.+.|..+...| ..+|+.|...+..|+..|+.+.+
T Consensus 922 a~e~dl~a~e~ri~~~l--------------~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~~a~~Rr~~L~~~~~ 987 (995)
T 2ycu_A 922 AFDGECQSLEGQSNSDL--------------LSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE 987 (995)
T ss_dssp HHHHHHHHTTTCSCSSH--------------HHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHSSSCCCC--------
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988876 67 8899999999888999999999999 59999999999999999999876
Q ss_pred HhH
Q psy6936 834 FQQ 836 (1032)
Q Consensus 834 ~~~ 836 (1032)
.++
T Consensus 988 ~~q 990 (995)
T 2ycu_A 988 RLQ 990 (995)
T ss_dssp ---
T ss_pred HHH
Confidence 554
No 49
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=98.09 E-value=5.1e-05 Score=65.67 Aligned_cols=102 Identities=12% Similarity=0.235 Sum_probs=84.2
Q ss_pred HHHHHHhHHHHHhHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---cCC----CCch
Q psy6936 155 VQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVL---EGH----PERE 227 (1032)
Q Consensus 155 ~~f~~~~~~~~~wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~l~~~l~~~~~~l~~l~~~~~~l~~---~~~----~~~~ 227 (1032)
.+|-..+..+..|++.++..|..+-...++++|+.++..|..|+.++......+..+...+..|-. ..+ +..|
T Consensus 15 leFAKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~np 94 (129)
T 1wlx_A 15 LEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNP 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCS
T ss_pred HHHHHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence 579999999999999999999977778999999999999999999999999999988777666643 222 2212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy6936 228 TIVRRKEELSEAWMRLKQLALMRQEKLFG 256 (1032)
Q Consensus 228 ~i~~~~~~l~~rw~~l~~~~~~r~~~Le~ 256 (1032)
..--.++.|...|+.+...+.+|...|..
T Consensus 95 YT~it~~~l~~~W~~l~~li~~Rd~~Lq~ 123 (129)
T 1wlx_A 95 YTTVTPQIINSKWEKVQQLVPKRDHALLE 123 (129)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112889999999999999999999975
No 50
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=98.08 E-value=5.7e-05 Score=65.35 Aligned_cols=109 Identities=12% Similarity=0.232 Sum_probs=86.3
Q ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHHHHHhccCCC-CChhhHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHh----
Q psy6936 41 EKLEDSRR-FQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMIN---- 114 (1032)
Q Consensus 41 ~~L~~~~~-~~~f~~~~~~~~~Wl~~~~~~l~~~~~-~~~~~~~~~l~~~~~l~~el~~~~~~v~~l~~~~~~L~~---- 114 (1032)
.+|+.... +-.|-..++.+..|+..++..|.++-. .++.+|++++..|..|...+...+..++.+...+..|-.
T Consensus 5 ~~le~id~L~leFAKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~ 84 (129)
T 1wlx_A 5 KQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAES 84 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555533 458999999999999999988887654 678999999999999999999999999999777766543
Q ss_pred cC----CC-CchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy6936 115 QN----HF-ASEVIRKRLEELHRLWELLLSKLAEKGMKLQQA 151 (1032)
Q Consensus 115 ~~----~~-~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~ 151 (1032)
.+ .+ +...|. ...|.+.|+.+..++.+|...|..-
T Consensus 85 ~~~~~~~~npYT~it--~~~l~~~W~~l~~li~~Rd~~Lq~E 124 (129)
T 1wlx_A 85 NHIKLSGSNPYTTVT--PQIINSKWEKVQQLVPKRDHALLEE 124 (129)
T ss_dssp SCCCCSSSCSSCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcCCCCCCCCccch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 222232 7899999999999999999998753
No 51
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.89 E-value=6.9e+02 Score=34.90 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHhHHHHHhHHhhhhhhccc---------ccCCCHHHHHHHH
Q psy6936 122 VIRKRLEELHRLWELLLSKLAEKGMKLQQAL-VLVQFIRQCDEVMFWINDKEAFVTAD---------EFGADLEHVEVLQ 191 (1032)
Q Consensus 122 ~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l-~~~~f~~~~~~~~~wl~~~e~~l~~~---------~~~~d~~~~~~~l 191 (1032)
..-+-+......+..=...+..+..+|+.-+ ++.+-...++.+..-|...+..|... .+..+...++...
T Consensus 1896 syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k 1975 (3245)
T 3vkg_A 1896 HYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQ 1975 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554555555555665555 34444455555555555555544322 1112222333333
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy6936 192 RKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGA 257 (1032)
Q Consensus 192 ~~~~~l~~~l~~~~~~l~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~rw~~l~~~~~~r~~~Le~~ 257 (1032)
......+..+......+......++.=+...-|. ...+..+..++.........+...+..|...
T Consensus 1976 ~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa-~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~l 2040 (3245)
T 3vkg_A 1976 KDARELQVQLDVRNKEIAVQKVKAYADLEKAEPT-GPLREEVEQLENAANELKLKQDEIVATITAL 2040 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444322222333 3455566666666555555555544444433
No 52
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=44.08 E-value=79 Score=24.59 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=39.2
Q ss_pred hcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHH
Q psy6936 9 VKILETANDIQERREQVLNRYADFKSEARSKREKLEDSR-RFQYFKRDADELESWIYEKL 67 (1032)
Q Consensus 9 ~~~~~~~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~-~~~~f~~~~~~~~~Wl~~~~ 67 (1032)
+........+..+++.+..+...|...+..-...|+.+. .-.++...+..+..-|+.+.
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344445667788999999999999999999999999873 33456666666666665543
No 53
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=40.94 E-value=1.1e+02 Score=24.60 Aligned_cols=57 Identities=18% Similarity=0.411 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHhcc
Q psy6936 16 NDIQERREQVLNRYADFK----SEARSKREKLEDSR-RFQYFKRDADELESWIYEKLQAASD 72 (1032)
Q Consensus 16 ~~i~~~l~~l~~r~~~l~----~~~~~r~~~L~~~~-~~~~f~~~~~~~~~Wl~~~~~~l~~ 72 (1032)
+.++..+..|..+|.+|. .+...-...++++. .+.+|.+.+.+-.-||....+.++.
T Consensus 23 d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 23 ELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 345555666666666664 11222233444443 4567888888888888877665543
No 54
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=36.17 E-value=3.3e+02 Score=26.87 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHhccCCCCChhhHHHHHHhhHHHHHH
Q psy6936 16 NDIQERREQVLNRYADFKSEARSKREKLEDS-RRFQYFKRDADELESWIYEKLQAASDESYKETTNLQAKIQKHQAFEAE 94 (1032)
Q Consensus 16 ~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~-~~~~~f~~~~~~~~~Wl~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~e 94 (1032)
..+...+..+......+...+......+.+. ....++...+..+..-+......+.... +.....+...++..+...
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~--~~kE~~aL~kEie~~~~~ 105 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK--SERELRSLNIEEDIAKER 105 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q psy6936 95 VAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALV 153 (1032)
Q Consensus 95 l~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~ 153 (1032)
+......+..+....+.+-. ....+...+..+...+......+......++..+.
T Consensus 106 i~~lE~eile~~e~ie~~~~----~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~ 160 (256)
T 3na7_A 106 SNQANREIENLQNEIKRKSE----KQEDLKKEMLELEKLALELESLVENEVKNIKETQQ 160 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 55
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=34.80 E-value=1.7e+02 Score=23.29 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=44.8
Q ss_pred HHhhchHHHHHhHHHHHhhhcccc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 941 GFNRTIEDIELWLSEIEGQLMSED-YGKDLTSVQNLQKKHALLEADVASHLDRIESVKAA 999 (1032)
Q Consensus 941 ~~~~~~~~l~~wL~~~e~~L~~~~-~~~~~~~~~~~l~~~~~l~~ei~~~~~~v~~l~~~ 999 (1032)
.+...|..+..-+..++..|..++ +..|...+.....++..++.++.....+=..|...
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567777777788888888876 46788888888999999999888887766665443
No 56
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.13 E-value=1.9e+02 Score=23.42 Aligned_cols=39 Identities=3% Similarity=0.144 Sum_probs=28.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHhchh--hhccCHHHHHHHHHH
Q psy6936 609 HRFLADYRDLISWVSDMKAIISAD--ELAKDVAGAEALLER 647 (1032)
Q Consensus 609 ~~f~~~~~~l~~Wl~~~e~~l~~~--~~~~~~~~~~~~l~~ 647 (1032)
.+|...+.....|++++|..|.+. +.+.+|.++..-++.
T Consensus 15 ~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~ 55 (93)
T 3t98_B 15 QQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQK 55 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 478888889999999999998763 334567766555544
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=32.08 E-value=1.7e+02 Score=22.31 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHH
Q psy6936 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSR-RFQYFKRDADELESWIYEKL 67 (1032)
Q Consensus 15 ~~~i~~~l~~l~~r~~~l~~~~~~r~~~L~~~~-~~~~f~~~~~~~~~Wl~~~~ 67 (1032)
...+..+++.+..+...|...+..-...|+.+. .-.++...+..+..-|+.+.
T Consensus 2 ~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI 55 (72)
T 3cve_A 2 SHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKI 55 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 446788999999999999999999999999984 33466666766666666543
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.71 E-value=4.1e+02 Score=28.86 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=12.0
Q ss_pred hhHHHHHh-hHHHHHHHHhchHhHHHH
Q psy6936 865 NLNGKVQK-HQNFEQELNANKTRMDEI 890 (1032)
Q Consensus 865 ~l~~~l~~-~~~l~~el~~~~~~~~~v 890 (1032)
.|+..|.+ -+.|..-|+..+..|+.+
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 44544444 244444444444444444
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.11 E-value=3e+02 Score=23.69 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc
Q psy6936 57 DELESWIYEKLQAAS 71 (1032)
Q Consensus 57 ~~~~~Wl~~~~~~l~ 71 (1032)
.++..|...+...+.
T Consensus 7 ~eaE~~y~~K~eel~ 21 (129)
T 3tnu_B 7 TEAESWYQTKYEELQ 21 (129)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566665443333
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.46 E-value=1.4e+02 Score=21.14 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 906 DKIRQRMEQIVHLWESLATATEKKGNKLQ 934 (1032)
Q Consensus 906 ~~i~~~l~~l~~~w~~l~~~~~~~~~~L~ 934 (1032)
+.++..+.+|+.++..|.....+-+.+|.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998887764
No 61
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.16 E-value=3.3e+02 Score=23.51 Aligned_cols=10 Identities=30% Similarity=0.913 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy6936 58 ELESWIYEKL 67 (1032)
Q Consensus 58 ~~~~Wl~~~~ 67 (1032)
++..|...+.
T Consensus 10 eaE~~y~~K~ 19 (131)
T 3tnu_A 10 DAEEWFFTKT 19 (131)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3445555443
No 62
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.02 E-value=3.2e+02 Score=23.24 Aligned_cols=64 Identities=9% Similarity=0.217 Sum_probs=43.6
Q ss_pred hhHHHHHhhHHHHHHHHhchHhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy6936 865 NLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKK 929 (1032)
Q Consensus 865 ~l~~~l~~~~~l~~el~~~~~~~~~v~~~g~~l~~~~~~~~~~i~~~l~~l~~~w~~l~~~~~~~ 929 (1032)
.+...+.+...+..+|......+..|...-..++.... ..+.++..|+.+...-..+...+..+
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~-~~~~~~~~l~~l~~~i~~~a~~ik~~ 69 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN-PDEKTKEELEELMSDIKKTANKVRSK 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888888887777776433 34667778777775444444444333
No 63
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.01 E-value=3.6e+02 Score=23.18 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhc
Q psy6936 268 DETVAWIAEKDAVL 281 (1032)
Q Consensus 268 ~~~~~Wl~~~e~~l 281 (1032)
.++..|.......+
T Consensus 7 ~eaE~~y~~K~eel 20 (129)
T 3tnu_B 7 TEAESWYQTKYEEL 20 (129)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 45566766554444
No 64
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.51 E-value=3.4e+02 Score=22.24 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhchHHHHHhHHHHHhhhc
Q psy6936 906 DKIRQRMEQIVHLWESLATATEKKGNKLQEAS-QQQGFNRTIEDIELWLSEIEGQLM 961 (1032)
Q Consensus 906 ~~i~~~l~~l~~~w~~l~~~~~~~~~~L~~a~-~~~~~~~~~~~l~~wL~~~e~~L~ 961 (1032)
+.|+.+|..|+.--+.....+..-...+..+- ...++...+..+..-+..++..|.
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56778888887777777777777666666666 345666666666666665555554
No 65
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=20.38 E-value=2.7e+02 Score=20.72 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q psy6936 681 DDIREKLRNLENDKTHLLTLWEERRILYEQCMDL-QLFY 718 (1032)
Q Consensus 681 ~~i~~~l~~l~~~w~~l~~~~~~r~~~Le~~l~~-~~f~ 718 (1032)
..|.+.+..++..|..-.+.+-+-.+.+++..+. +.|.
T Consensus 10 ehikellqqlnknwhrhqgnlhdmnqqmeqlfqefqhfm 48 (102)
T 3vjf_A 10 EHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFM 48 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHH
Confidence 3577777888888887777776666666665543 5553
Done!