RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6936
(1032 letters)
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 218 bits (557), Expect = 6e-64
Identities = 117/318 (36%), Positives = 174/318 (54%), Gaps = 3/318 (0%)
Query: 148 LQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMAS-QEY 206
L Q R+ D++ WI ++E + E G D EHV +LQ +F EF +D + +
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 207 RVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRD 266
RV VN LAD+L+ GH + TI K+ L+EAW L +L R + L ++E+ +F D
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHD 121
Query: 267 ADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCG 326
A E I +K L +E GRD +V+TLQR H E D+ AL +V L +A RL
Sbjct: 122 AKEIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180
Query: 327 IHSDHG-DQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKA 385
++ D IQ + E++E W+ L + R+ +L ++ RF + RDL+ W+ D+
Sbjct: 181 AYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIR 240
Query: 386 IISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKL 445
I A E +DV+ E L+ HQ K EIDAR DSF + G+SLL R HYA+++I+EKL
Sbjct: 241 QIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKL 300
Query: 446 RNLENDKTHLLTLWEERR 463
L + ++ WE+R
Sbjct: 301 LQLTEKRKEMIDKWEDRW 318
Score = 171 bits (435), Expect = 2e-47
Identities = 89/341 (26%), Positives = 147/341 (43%), Gaps = 31/341 (9%)
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA-REDSFRGTA 424
L + + DL W+++ + + + EL +D L ER +E + ++
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 425 DAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADT 484
L++ H A I E L LL L + R + +L FY D ++
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFG 127
Query: 485 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAA 544
+ + L E+LG ++VE L + H FE + A +++ L E A +L
Sbjct: 128 RIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDK 186
Query: 545 DDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDE 604
D Q ++ E++E W+ L + R+ +L +
Sbjct: 187 ADDIQ-----------------------------KRENEVLEAWKSLLDACESRRVRLVD 217
Query: 605 SYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRG 664
+ RF + RDL+ W+ D+ I A E +DV+ E L+ HQ K EIDAR DSF
Sbjct: 218 TGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTT 277
Query: 665 TADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 705
+ G+SLL R HYA+++I+EKL L + ++ WE+R
Sbjct: 278 CIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRW 318
Score = 164 bits (416), Expect = 6e-45
Identities = 68/318 (21%), Positives = 144/318 (45%), Gaps = 14/318 (4%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
L R+ + + W+A++E + +LG + V L ++ +F + ++
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE------ 61
Query: 774 LLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
++ ++ A +LI H A +A+ +D L + A LLE R IL SY+
Sbjct: 62 -------RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYE 114
Query: 834 FQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
+F D E + +K K ++ D + + H FE ++ A T++ ++
Sbjct: 115 LHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQED 174
Query: 894 GQELLEAN-HYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELW 952
L A +D I++R +++ W+SL A E + +L + + F + D+ LW
Sbjct: 175 AARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLW 234
Query: 953 LSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDAD 1012
+ ++ Q+ +++ +D++SV+ L H ++A++ + D + + L R H+ ++
Sbjct: 235 MEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASE 294
Query: 1013 NIKAKQAAMCERYENLQR 1030
IK K + E+ + +
Sbjct: 295 EIKEKLLQLTEKRKEMID 312
Score = 163 bits (413), Expect = 1e-44
Identities = 69/321 (21%), Positives = 135/321 (42%), Gaps = 4/321 (1%)
Query: 43 LEDSRRFQYFKRDADELESWIYEKLQAASDESYKET-TNLQAKIQKHQAFEAEV-AAHSN 100
R R+ D+LE WI E+ A + ++ ++ + F +
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 101 AIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQ 160
+ +++ E+IN H + I + + L+ W LL + + L + L +F
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHD 121
Query: 161 CDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLV- 219
E+ I DK + +E G D VE LQR F+ D+ + +V ++ + A +L
Sbjct: 122 AKEIFGRIQDKHKKL-PEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180
Query: 220 LEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDA 279
+ + I +R+ E+ EAW L R+ +L + RF + + W+ +
Sbjct: 181 AYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIR 240
Query: 280 VLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKR 339
+ + E RD++SV+ L H+G++ ++ A D +T L ++I+ K
Sbjct: 241 QIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKL 300
Query: 340 AEIVEYWERLTGKAKGRKQKL 360
++ E + + K + R + L
Sbjct: 301 LQLTEKRKEMIDKWEDRWEWL 321
Score = 152 bits (384), Expect = 1e-40
Identities = 70/330 (21%), Positives = 132/330 (40%), Gaps = 18/330 (5%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA-REDSFRGTA 666
L + + DL W+++ + + + EL +D L ER +E + ++
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 667 DAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADT 726
L++ H A I E L LL L + R + +L FY D ++
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFG 127
Query: 727 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALD 786
+ + L E+LG ++VE L + H FE + A Q++ L
Sbjct: 128 RIQDKHKKLP-EELGRDQNTVETLQRMHTTFEHDIQALGT--------------QVRQLQ 172
Query: 787 EFATKLIE-GQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETK 845
E A +L ADD+ +R + +L+ LL+ RR L D+ +F +
Sbjct: 173 EDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLM 232
Query: 846 SWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYA 904
W+ + + + D +++ + HQ + E++A G+ LL HYA
Sbjct: 233 LWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYA 292
Query: 905 SDKIRQRMEQIVHLWESLATATEKKGNKLQ 934
S++I++++ Q+ + + E + L+
Sbjct: 293 SEEIKEKLLQLTEKRKEMIDKWEDRWEWLR 322
Score = 142 bits (358), Expect = 3e-37
Identities = 70/359 (19%), Positives = 134/359 (37%), Gaps = 47/359 (13%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSL-AAQEEKIKALD 530
L R+ + + W+A++E + +LG + V L ++ +F + +E++ ++
Sbjct: 8 LFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 531 EFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWER 590
A +LI H A +A+ +D L + W
Sbjct: 68 HLADELINSGHSDAATIAEWKDGLNEA------------------------------WAD 97
Query: 591 LTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQE 650
L R Q L SY LH+F D +++ + D + +EL +D E L H
Sbjct: 98 LLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLP-EELGRDQNTVETLQRMHTT 156
Query: 651 HKGEIDAREDSFRGTADAGQSLLDRN-HYAADDIREKLRNLENDKTHLLTLWEERRILYE 709
+ +I A R + L ADDI+++ + LL E RR+
Sbjct: 157 FEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLV 216
Query: 710 QCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIK 769
D F+ WM + ++ + SVE L+ H+ + + A+ +
Sbjct: 217 DTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFT 276
Query: 770 ALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAIL 828
+L L+ +HYA++++ ++ L ++R +++K R L
Sbjct: 277 TCIEL--------------GKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWL 321
Score = 128 bits (323), Expect = 1e-32
Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 1/241 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
A I E ++ + +AD ++ + L S F DA E+ I +K + +E
Sbjct: 81 AATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEEL 140
Query: 75 YKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMI-NQNHFASEVIRKRLEELHRL 133
++ ++ + H FE ++ A + L + ++ I+KR E+
Sbjct: 141 GRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEA 200
Query: 134 WELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRK 193
W+ LL + ++L +F ++M W+ D + A E D+ VE+L
Sbjct: 201 WKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNN 260
Query: 194 FDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEK 253
+ ++ ++ T +L L+ H E I + +L+E + R E
Sbjct: 261 HQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEW 320
Query: 254 L 254
L
Sbjct: 321 L 321
Score = 105 bits (262), Expect = 1e-24
Identities = 34/206 (16%), Positives = 87/206 (42%), Gaps = 4/206 (1%)
Query: 828 LEDSYKFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQEL-NANKT 885
++ Q R+ D+ + W+ E+ A D ++ ++ + F ++ N +
Sbjct: 2 SHMRHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREFARDTGNIGQE 61
Query: 886 RMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRT 945
R+D + EL+ + H + I + + + W L + + L + + F
Sbjct: 62 RVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHKFYHD 121
Query: 946 IEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLE 1005
++I + + + + E+ G+D +V+ LQ+ H E D+ + ++ ++ +
Sbjct: 122 AKEIFGRIQDKH-KKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQA 180
Query: 1006 R-GHFDADNIKAKQAAMCERYENLQR 1030
AD+I+ ++ + E +++L
Sbjct: 181 AYAGDKADDIQKRENEVLEAWKSLLD 206
Score = 72.7 bits (178), Expect = 8e-14
Identities = 32/138 (23%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 13 ETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEK-LQAAS 71
+ A+DIQ+R +VL + S+R +L D+ F +L W+ + Q +
Sbjct: 185 DKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEA 244
Query: 72 DESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELH 131
E ++ ++++ + HQ +AE+ A +++ GK ++ + H+ASE I+++L +L
Sbjct: 245 QEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHYASEEIKEKLLQLT 304
Query: 132 RLWELLLSKLAEKGMKLQ 149
+ ++ K ++ L+
Sbjct: 305 EKRKEMIDKWEDRWEWLR 322
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 218 bits (556), Expect = 1e-63
Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 4/323 (1%)
Query: 45 DSRRFQYFKRDADELESWIYEK-LQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIV 103
++ Q + DADE E+WI E+ L SDE K+ +++H + V + I
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 104 VLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDE 163
L + + +++ H E I + ++ + + L E+ KL+ L Q R+ D+
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 164 VMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDM-ASQEYRVTEVNQLADKLVLEG 222
+ WI++KE ++ E G D +HV +L+ KF +F ++ A + RV VN ++L+ G
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG 181
Query: 223 HPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLS 282
H E TI K+ L+E W L +L R + L ++++ R+ E + I EK L
Sbjct: 182 HSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHREL- 240
Query: 283 SDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGI-HSDHGDQIQAKRAE 341
++ G D ++ ++ R H ERD+ L +V A RL + + IQ K E
Sbjct: 241 PEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQE 300
Query: 342 IVEYWERLTGKAKGRKQKLDESY 364
+ W+ L GR+ +L ++
Sbjct: 301 VSAAWQALLDACAGRRTQLVDTA 323
Score = 187 bits (477), Expect = 5e-53
Identities = 67/337 (19%), Positives = 142/337 (42%), Gaps = 14/337 (4%)
Query: 604 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR 663
+ ++ D + +W+ + + + +DE+ KD GA +L+RH + ++ + +
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 664 GTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQ 723
A Q LL H + I ++ L + EER+ E L R+T+
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 724 ADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIK 783
+ W++++E S+ ++G D V L K DF + + + ++
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFAR-------------ETGAIGQERVD 168
Query: 784 ALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDE 843
++ F +LI+ H A +A+ +D L + A LLE R +L SY ++ E
Sbjct: 169 NVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAE 228
Query: 844 TKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHY 903
+ EK + +D LD + + H FE++++ ++ + L A
Sbjct: 229 ILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAG 288
Query: 904 -ASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQ 939
++ I+ + +++ W++L A + +L + + +
Sbjct: 289 EKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 325
Score = 181 bits (460), Expect = 8e-51
Identities = 74/324 (22%), Positives = 140/324 (43%), Gaps = 3/324 (0%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
A+E Q++ DADE AWI E++ + SDE +D + ++H +R + +
Sbjct: 3 ANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQ 62
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
L + A L G+QI + ++ +++ L A+ RK+KL+ Y+L + + DL
Sbjct: 63 LASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDL 122
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA-REDSFRGTADAGQSLLDRNH 435
W+S+ + + S+ E+ +D L ++ ++ E A ++ + L+D H
Sbjct: 123 EQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGH 182
Query: 436 YAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSN 495
A I E L LL L + R L DL ++ + + ++ L
Sbjct: 183 SEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP- 241
Query: 496 EDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHY-AADDVAQRRDLL 554
ED+G + E+ + H FE+ + +++ + AT+L A+ + + +
Sbjct: 242 EDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEV 301
Query: 555 LKRRAGLLEKSARRRAILEDSYKF 578
LL+ A RR L D+
Sbjct: 302 SAAWQALLDACAGRRTQLVDTADK 325
Score = 159 bits (403), Expect = 4e-43
Identities = 69/355 (19%), Positives = 134/355 (37%), Gaps = 33/355 (9%)
Query: 362 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR 421
+ ++ D + +W+ + + + +DE+ KD GA +L+RH + ++ + +
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 422 GTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQ 481
A Q LL H + I ++ L + EER+ E L R+T+
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 482 ADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSL-AAQEEKIKALDEFATKLIEGQ 540
+ W++++E S+ ++G D V L K DF + A +E++ ++ F +LI+
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG 181
Query: 541 HYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQ 600
H A +A+ +D L + W L R Q
Sbjct: 182 HSEAATIAEWKDGLNEM------------------------------WADLLELIDTRMQ 211
Query: 601 KLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 660
L SY LHR+ +++ + + + +++ D + AE+ H + ++
Sbjct: 212 LLAASYDLHRYFYTGAEILGLIDEKHRELP-EDVGLDASTAESFHRVHTAFERDVHLLGV 270
Query: 661 SFRGTADAGQSLLDRNHY-AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL 714
+ D L A+ I+ K + + LL RR D
Sbjct: 271 QVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADK 325
Score = 154 bits (391), Expect = 1e-41
Identities = 59/321 (18%), Positives = 139/321 (43%), Gaps = 18/321 (5%)
Query: 713 DLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 772
+ Q +Y D ++A+ W+ +QE ++ ++++ + ++K+H ++++
Sbjct: 5 EAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGR------ 58
Query: 773 DLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY 832
IK L A L+ H + + + + + K AGL + + R+ LE+ Y
Sbjct: 59 --------NIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMY 110
Query: 833 KFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNA-NKTRMDEI 890
Q +R+ D+ + W++EK A+ D ++ K ++F +E A + R+D +
Sbjct: 111 HLFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 170
Query: 891 TSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIE 950
+ + L++A H + I + + + +W L + + L + + T +I
Sbjct: 171 NAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEIL 230
Query: 951 LWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFD 1010
+ E + + ED G D ++ ++ + H E DV +++ + + +
Sbjct: 231 GLIDEKH-RELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGE 289
Query: 1011 -ADNIKAKQAAMCERYENLQR 1030
A+ I+ K+ + ++ L
Sbjct: 290 KAEAIQNKEQEVSAAWQALLD 310
Score = 121 bits (304), Expect = 4e-30
Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 4/248 (1%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
I + QV YA K A ++ KLE+ KR+ D+LE WI EK AS
Sbjct: 78 GEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDDLEQWISEKELVASSPE 137
Query: 75 YKET-TNLQAKIQKHQAFEAEV-AAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHR 132
+ ++ K + F E A + ++ + +I+ H + I + + L+
Sbjct: 138 MGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNE 197
Query: 133 LWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQR 192
+W LL + + L + L ++ E++ I++K + ++ G D E R
Sbjct: 198 MWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELP-EDVGLDASTAESFHR 256
Query: 193 KFDEFQKDMASQEYRVTEVNQLADKLVLEGHPER-ETIVRRKEELSEAWMRLKQLALMRQ 251
F++D+ +V + +A +L E+ E I +++E+S AW L R+
Sbjct: 257 VHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRR 316
Query: 252 EKLFGAHE 259
+L +
Sbjct: 317 TQLVDTAD 324
Score = 120 bits (302), Expect = 9e-30
Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 2/203 (0%)
Query: 830 DSYKFQQFERDCDETKSWVTEK-LKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMD 888
++ + QQ+ D DE ++W+ E+ L +D+ D +++H ++ + +
Sbjct: 2 NANEAQQYYLDADEAEAWIGEQELYVISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIK 61
Query: 889 EITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIED 948
++ S Q LL A H ++I + Q+ + L E++ KL+ R +D
Sbjct: 62 QLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQLKRETDD 121
Query: 949 IELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADV-ASHLDRIESVKAATEQFLERG 1007
+E W+SE E S + G+D V L+ K + A +R+++V A E+ ++ G
Sbjct: 122 LEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG 181
Query: 1008 HFDADNIKAKQAAMCERYENLQR 1030
H +A I + + E + +L
Sbjct: 182 HSEAATIAEWKDGLNEMWADLLE 204
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 202 bits (514), Expect = 4e-58
Identities = 91/319 (28%), Positives = 183/319 (57%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
A++ Q FN + W++E +A+L+S++YG+DLASV L +KH+ +E D++A ED++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
L ++AD L + Q++ KR I ++R+ A R+ KL+ES+ LH+F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + +G D G+ L D N
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 437 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNE 496
++I+++L + L L R E+ ++ Q F + E+ + W+ ++ +++E
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASE 241
Query: 497 DLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLK 556
D GD+L +++ L+KKHE FE ++++ + LI+ ++ +++ + L
Sbjct: 242 DYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKG 301
Query: 557 RRAGLLEKSARRRAILEDS 575
+ + L + +A+R+A L+++
Sbjct: 302 KVSDLEKAAAQRKAKLDEN 320
Score = 185 bits (471), Expect = 3e-52
Identities = 88/317 (27%), Positives = 165/317 (52%), Gaps = 1/317 (0%)
Query: 48 RFQYFKRDADELESWIYEKLQAASDESYKET-TNLQAKIQKHQAFEAEVAAHSNAIVVLD 106
+ Q F + + W+ E + E Y + ++ ++KHQ EA+++AH + + L+
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 107 NTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMF 166
+ ++ + F + ++ + E ++ ++ + S A + KL ++ L QF R D+
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 167 WINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPER 226
WI +K+ V+++++G DL V+ L++K + ++A+ E + V KL + +
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGK 183
Query: 227 ETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY 286
E I +R + + W LKQLA R ++L + E Q+F + +E AWI EK +++S++Y
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDY 243
Query: 287 GRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYW 346
G LA++Q L +KHE E D +D+V+ + A + L ++ H + I AK +
Sbjct: 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKV 303
Query: 347 ERLTGKAKGRKQKLDES 363
L A RK KLDE+
Sbjct: 304 SDLEKAAAQRKAKLDEN 320
Score = 180 bits (458), Expect = 2e-50
Identities = 86/361 (23%), Positives = 174/361 (48%), Gaps = 44/361 (12%)
Query: 471 DLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 530
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+++K L+
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 531 EFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWER 590
A L+ + V +R+ + R ++R
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGR------------------------------FQR 93
Query: 591 LTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQE 650
+ A R+ KL+ES+ LH+F D D SW+ + K ++S+++ +D+ G + L ++H+
Sbjct: 94 IKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKR 153
Query: 651 HKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQ 710
+ E+ A E + +G D G+ L D N ++I+++L + L L R E+
Sbjct: 154 LEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEE 213
Query: 711 CMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKA 770
++ Q F + E+ + W+ ++ +++ED GD+L +++ L+KKHE FE ++++
Sbjct: 214 SLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVND 273
Query: 771 LDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILED 830
+ LI+ ++ +++ + L + + L + +A+R+A L++
Sbjct: 274 VCAN--------------GEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
Query: 831 S 831
+
Sbjct: 320 N 320
Score = 178 bits (452), Expect = 1e-49
Identities = 95/319 (29%), Positives = 163/319 (51%), Gaps = 15/319 (4%)
Query: 713 DLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 772
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+++K L+
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 773 DLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY 832
A L+ + V +R+ + R + +A RRA L +S+
Sbjct: 64 SQ--------------ADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH 109
Query: 833 KFQQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNANKTRMDEIT 891
+ QF RD D+ +SW+ EK + ++Y D T + +KH+ E EL A++ + +
Sbjct: 110 RLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVL 169
Query: 892 STGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIEL 951
TG++L + N ++I+QR+ Q V W+ L +G +L+E+ + Q F +E+ E
Sbjct: 170 DTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEA 229
Query: 952 WLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDA 1011
W++E + SEDYG L ++Q L KKH E D H DR+ V A E +++ +
Sbjct: 230 WINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHV 289
Query: 1012 DNIKAKQAAMCERYENLQR 1030
+NI AK + + +L++
Sbjct: 290 ENITAKMKGLKGKVSDLEK 308
Score = 176 bits (447), Expect = 4e-49
Identities = 80/331 (24%), Positives = 163/331 (49%), Gaps = 15/331 (4%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 667
F +D W+S+++A++++++ KD+A LL++HQ + +I A ED +
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 668 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 727
SL+ + + +++K + + ++ RR + L F+RD + ++W
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESW 124
Query: 728 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDE 787
+ +++ +S+ED G L V+ L KKH+ E LAA E I+ + D
Sbjct: 125 IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDT------------- 171
Query: 788 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSW 847
KL + +++ QR + L + +A R LE+S ++QQF + +E ++W
Sbjct: 172 -GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 230
Query: 848 VTEKLKF-ANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASD 906
+ EK+ A++D + G ++KH+ FE + +K R++++ + G++L++ N++ +
Sbjct: 231 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 290
Query: 907 KIRQRMEQIVHLWESLATATEKKGNKLQEAS 937
I +M+ + L A ++ KL E S
Sbjct: 291 NITAKMKGLKGKVSDLEKAAAQRKAKLDENS 321
Score = 170 bits (432), Expect = 4e-47
Identities = 80/313 (25%), Positives = 173/313 (55%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
F + FW+++ EA + ++++G DL V L +K + D+++ E R+ ++N A
Sbjct: 7 NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQA 66
Query: 216 DKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIA 275
D L+ + + ++E ++ + R+K +A R+ KL +H + +F RD D+ +WI
Sbjct: 67 DSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIK 126
Query: 276 EKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQI 335
EK ++SS++YGRDL VQ L++KH+ +E +LAA E + + +L ++ ++I
Sbjct: 127 EKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEI 186
Query: 336 QAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKD 395
Q + A+ V++W+ L A R Q+L+ES +F+A+ + +W+++ ++++++
Sbjct: 187 QQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDT 246
Query: 396 VAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHL 455
+A + LL++H+ + + +D G+ L+ +N++ ++I K++ L+ + L
Sbjct: 247 LAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDL 306
Query: 456 LTLWEERRILYEQ 468
+R+ ++
Sbjct: 307 EKAAAQRKAKLDE 319
Score = 163 bits (415), Expect = 9e-45
Identities = 70/345 (20%), Positives = 158/345 (45%), Gaps = 30/345 (8%)
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 425
F +D W+S+++A++++++ KD+A LL++HQ + +I A ED +
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485
SL+ + + +++K + + ++ RR + L F+RD + ++W
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESW 124
Query: 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAAD 545
+ +++ +S+ED G L V+ L KKH+ E LAA E I+ + + KL + +
Sbjct: 125 IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKE 184
Query: 546 DVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDES 605
++ QR + W+ L A R Q+L+ES
Sbjct: 185 EIQQRLAQFVDH------------------------------WKELKQLAAARGQRLEES 214
Query: 606 YYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGT 665
+F+A+ + +W+++ ++++++ +A + LL++H+ + + +D
Sbjct: 215 LEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDV 274
Query: 666 ADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQ 710
G+ L+ +N++ ++I K++ L+ + L +R+ ++
Sbjct: 275 CANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDE 319
Score = 141 bits (356), Expect = 5e-37
Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 1/241 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
+ ++++RE + R+ KS A ++R KL +S R F RD D+ ESWI EK S E
Sbjct: 77 TSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSED 136
Query: 75 Y-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRL 133
Y ++ T +Q +KH+ EAE+AAH AI + +TGK++ + N E I++RL +
Sbjct: 137 YGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDH 196
Query: 134 WELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRK 193
W+ L A +G +L+++L QF+ +E WIN+K V ++++G L ++ L +K
Sbjct: 197 WKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKK 256
Query: 194 FDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEK 253
+ F+ D + RV +V + L+ + + E I + + L L++ A R+ K
Sbjct: 257 HEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAK 316
Query: 254 L 254
L
Sbjct: 317 L 317
Score = 115 bits (289), Expect = 4e-28
Identities = 52/200 (26%), Positives = 107/200 (53%), Gaps = 1/200 (0%)
Query: 832 YKFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNANKTRMDEI 890
K Q F + W++E ++Y D ++N ++KHQ E +++A++ R+ ++
Sbjct: 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDL 62
Query: 891 TSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIE 950
S L+ ++ + + +++ + E I ++ + + + KL E+ + F R ++D E
Sbjct: 63 NSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEE 122
Query: 951 LWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFD 1010
W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H I+ V ++ +
Sbjct: 123 SWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG 182
Query: 1011 ADNIKAKQAAMCERYENLQR 1030
+ I+ + A + ++ L++
Sbjct: 183 KEEIQQRLAQFVDHWKELKQ 202
Score = 80.3 bits (198), Expect = 3e-16
Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
+IQ+R Q ++ + + K A ++ ++LE+S +Q F + +E E+WI EK+ + E
Sbjct: 183 KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASED 242
Query: 75 YKET-TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRL 133
Y +T +Q ++KH+AFE + H + + + G+++I +N+ E I +++ L
Sbjct: 243 YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGK 302
Query: 134 WELLLSKLAEKGMKLQQAL 152
L A++ KL +
Sbjct: 303 VSDLEKAAAQRKAKLDENS 321
Score = 76.8 bits (189), Expect = 3e-15
Identities = 41/97 (42%), Positives = 62/97 (63%)
Query: 936 ASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIES 995
A++QQ FN I+D + WLSE+E L SEDYGKDL SV NL KKH LLEAD+++H DR++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 996 VKAATEQFLERGHFDADNIKAKQAAMCERYENLQRPI 1032
+ + + + FD +K K+ + R++ ++
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMA 98
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 174 bits (442), Expect = 1e-49
Identities = 111/217 (51%), Positives = 153/217 (70%)
Query: 353 AKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGE 412
+S+ L RFL+D+RDL+SW++ ++ ++S+DELAKDV GAEALLERHQEH+ E
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTE 61
Query: 413 IDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL 472
IDAR +F+ GQ LL HYA+ +I++KL L+ ++ L W +RR++ +QC++L
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
QLF+RD EQA+ WMA +EAFL+ ED GDSLDSVEALIKKHEDF+K++ QEEKI AL F
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRR 569
A +LI HYA D++ RR+ +L R L + +R
Sbjct: 182 ADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 164 bits (417), Expect = 3e-46
Identities = 110/231 (47%), Positives = 152/231 (65%), Gaps = 14/231 (6%)
Query: 595 AKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGE 654
+S+ L RFL+D+RDL+SW++ ++ ++S+DELAKDV GAEALLERHQEH+ E
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTE 61
Query: 655 IDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDL 714
IDAR +F+ GQ LL HYA+ +I++KL L+ ++ L W +RR++ +QC++L
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
QLF+RD EQA+ WMA +EAFL+ ED GDSLDSVEALIKKHEDF+K++ QEEKI AL
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRR 825
A +LI HYA D++ RR+ +L R L + +R
Sbjct: 182 --------------ADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 133 bits (335), Expect = 3e-35
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 1/216 (0%)
Query: 36 ARSKREKLEDSRRFQYFKRDADELESWIYEKL-QAASDESYKETTNLQAKIQKHQAFEAE 94
DS Q F D +L SWI +SDE K+ T +A +++HQ E
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTE 61
Query: 95 VAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVL 154
+ A + + G++++ H+AS I+++L+ L + L ++ M L Q L L
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 155 VQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQL 214
F R C++ W+ +EAF+ ++ G L+ VE L +K ++F K + QE ++ +
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 215 ADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMR 250
AD+L+ GH + I R+ E+ + W RLK + +
Sbjct: 182 ADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 126 bits (317), Expect = 6e-33
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 1/211 (0%)
Query: 821 SARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQE 879
DS+ Q+F D + SW+ + D D T +++HQ E
Sbjct: 2 GHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTE 61
Query: 880 LNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQ 939
++A GQ+LL HYAS +I+Q+++ + L A ++ L + +
Sbjct: 62 IDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLEL 121
Query: 940 QGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAA 999
Q F+R E E W++ E L +ED G L SV+ L KKH + + ++I +++A
Sbjct: 122 QLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAF 181
Query: 1000 TEQFLERGHFDADNIKAKQAAMCERYENLQR 1030
+Q + GH+ +I +++ + +R+ L+
Sbjct: 182 ADQLIAAGHYAKGDISSRRNEVLDRWRRLKA 212
Score = 123 bits (311), Expect = 4e-32
Identities = 52/216 (24%), Positives = 104/216 (48%)
Query: 142 AEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDM 201
+ L +F+ ++M WIN V++DE D+ E L + E + ++
Sbjct: 3 HHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEI 62
Query: 202 ASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQ 261
++ Q +L+ GH I ++ + L + L++ + R+ L E+Q
Sbjct: 63 DARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQ 122
Query: 262 RFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEA 321
F+RD ++ W+A ++A L++++ G L SV+ L +KHE ++ + E+K++ L A A
Sbjct: 123 LFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFA 182
Query: 322 DRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRK 357
D+L I ++R E+++ W RL + ++
Sbjct: 183 DQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 118 bits (298), Expect = 2e-30
Identities = 50/231 (21%), Positives = 108/231 (46%), Gaps = 15/231 (6%)
Query: 700 LWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEK 759
+ DLQ F D +W+ +S+++L + EAL+++H++
Sbjct: 1 MGHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRT 60
Query: 760 SLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLE 819
+ A+ +A ++F +L+ HYA+ ++ Q+ D+L + RA L +
Sbjct: 61 EIDARAG--------------TFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEK 106
Query: 820 KSARRRAILEDSYKFQQFERDCDETKSWVTEKLKF-ANDDNYLDPTNLNGKVQKHQNFEQ 878
+RR +L+ + Q F RDC++ ++W+ + F +D ++ ++KH++F++
Sbjct: 107 AWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDK 166
Query: 879 ELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKK 929
+N + ++ + + +L+ A HYA I R +++ W L +K
Sbjct: 167 AINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEK 217
Score = 117 bits (294), Expect = 8e-30
Identities = 42/218 (19%), Positives = 87/218 (39%)
Query: 246 LALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVER 305
+ +H++QRF D + ++WI ++SSDE +D+ + L +H+
Sbjct: 1 MGHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRT 60
Query: 306 DLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY 365
++ A +L +I+ K + + L R+ LD+
Sbjct: 61 EIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLE 120
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 425
L F D +W++ +A ++ ++ + EAL+++H++ I+ +E+
Sbjct: 121 LQLFHRDCEQAENWMAAREAFLNTEDKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQA 180
Query: 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 463
L+ HYA DI + + + L E+R
Sbjct: 181 FADQLIAAGHYAKGDISSRRNEVLDRWRRLKAQMIEKR 218
Score = 115 bits (288), Expect = 5e-29
Identities = 46/248 (18%), Positives = 96/248 (38%), Gaps = 30/248 (12%)
Query: 458 LWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEK 517
+ DLQ F D +W+ +S+++L + EAL+++H++
Sbjct: 1 MGHHHHHHSHDSHDLQRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRT 60
Query: 518 SLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 577
+ A+ +A ++F +L+ HYA+ ++ Q+ D+L +
Sbjct: 61 EIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKLDILDQE-------------------- 100
Query: 578 FQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKD 637
L R+ LD+ L F D +W++ +A ++ ++
Sbjct: 101 ----------RADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTEDKGDS 150
Query: 638 VAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHL 697
+ EAL+++H++ I+ +E+ L+ HYA DI + + + L
Sbjct: 151 LDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDRWRRL 210
Query: 698 LTLWEERR 705
E+R
Sbjct: 211 KAQMIEKR 218
Score = 73.8 bits (181), Expect = 7e-15
Identities = 29/131 (22%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
+ +I+++ + + AD + +R L+ Q F RD ++ E+W+ + + E
Sbjct: 87 SPEIKQKLDILDQERADLEKAWVQRRMMLDQCLELQLFHRDCEQAENWMAAREAFLNTED 146
Query: 75 YKET-TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRL 133
++ +++A I+KH+ F+ + I L ++I H+A I R E+
Sbjct: 147 KGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAGHYAKGDISSRRNEVLDR 206
Query: 134 WELLLSKLAEK 144
W L +++ EK
Sbjct: 207 WRRLKAQMIEK 217
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 168 bits (427), Expect = 9e-48
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 1/212 (0%)
Query: 367 HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADA 426
FL D D +W+S + ++++++ + + AE LL++H K EID +DS++ ++
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 427 GQSLLDRNHYAA-DDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485
G+ ++ + ++L L+ L +WE R QC+ Q F +D +QA+
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAAD 545
++ QE L++ + DSL++ EA I+K EDF S+ +K+ + + KL+ + +D
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 546 DVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 577
+ ++ L+ R EK+ +L D+ +
Sbjct: 183 KIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE 214
Score = 158 bits (402), Expect = 2e-44
Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 609 HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADA 668
FL D D +W+S + ++++++ + + AE LL++H K EID +DS++ ++
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 669 GQSLLDRNHYAA-DDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 727
G+ ++ + ++L L+ L +WE R QC+ Q F +D +QA+
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 728 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDE 787
++ QE L++ + DSL++ EA I+K EDF S+ +K + + +
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDK--------------VLSPVD 168
Query: 788 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
KL+ + +D + ++ L+ R EK+ +L D+ +
Sbjct: 169 SGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE 214
Score = 124 bits (313), Expect = 2e-32
Identities = 40/209 (19%), Positives = 86/209 (41%), Gaps = 1/209 (0%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
F++ D+ W++ + V +++ L E L ++ + ++ + V +
Sbjct: 4 AFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESG 63
Query: 216 DKLVL-EGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWI 274
+K++ + PE + +R E L W L ++ R L Q F +DA + A +
Sbjct: 64 EKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAIL 123
Query: 275 AEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQ 334
+ ++ L+ E L + + RK E + DKV + ++L + + D+
Sbjct: 124 SNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDK 183
Query: 335 IQAKRAEIVEYWERLTGKAKGRKQKLDES 363
I+ K I + + KA+ L ++
Sbjct: 184 IKEKVQLIEDRHRKNNEKAQEASVLLRDN 212
Score = 122 bits (307), Expect = 1e-31
Identities = 42/207 (20%), Positives = 88/207 (42%), Gaps = 2/207 (0%)
Query: 50 QYFKRDADELESWIYEKL-QAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
Q F +D D+ ++W+ AS++ + + +Q+H + E+ H ++ + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 109 GKEMINQNHFAS-EVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFW 167
G+++I ++ +RLE L W+ L + L Q L +F + +
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 168 INDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERE 227
++++E + E LE E RKF++F M + +V +KLV EG+ +
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 228 TIVRRKEELSEAWMRLKQLALMRQEKL 254
I + + + + + + A L
Sbjct: 183 KIKEKVQLIEDRHRKNNEKAQEASVLL 209
Score = 113 bits (285), Expect = 1e-28
Identities = 34/198 (17%), Positives = 83/198 (41%), Gaps = 2/198 (1%)
Query: 835 QQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
Q F +D D+ ++W++ K ++ +Q+H + E++ ++ + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 894 GQELLEANHYAS-DKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELW 952
G+++++ + QR+E + W++L E + + L + Q F + + E
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 953 LSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDAD 1012
LS E L + L + + +K + ++ D++ S + + + G+ +D
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 1013 NIKAKQAAMCERYENLQR 1030
IK K + +R+
Sbjct: 183 KIKEKVQLIEDRHRKNNE 200
Score = 113 bits (284), Expect = 2e-28
Identities = 36/212 (16%), Positives = 89/212 (41%), Gaps = 1/212 (0%)
Query: 261 QRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAE 320
Q F +D D+ AW++ ++S++ L + L ++H G++ ++ +D +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 321 ADRLC-GIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISW 379
+++ G + + + W+ L + R L + F D + +
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAI 122
Query: 380 VSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAAD 439
+S+ + ++ E + AEA + + ++ G ++ D D+G L+ + +D
Sbjct: 123 LSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSD 182
Query: 440 DIREKLRNLENDKTHLLTLWEERRILYEQCMD 471
I+EK++ +E+ +E +L ++
Sbjct: 183 KIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE 214
Score = 111 bits (279), Expect = 7e-28
Identities = 37/226 (16%), Positives = 94/226 (41%), Gaps = 16/226 (7%)
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
Q F +D + W++ + +++ED+ +SL E L+++H + + ++ + + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAA-DDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
K+I+GQ + QR + L L R L
Sbjct: 63 --------------GEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG 108
Query: 834 FQQFERDCDETKSWVTEKLKF-ANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
FQ+F++D + ++ ++ + A+ + ++K ++F + N+ ++
Sbjct: 109 FQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVD 168
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQ 938
+G +L+ + SDKI+++++ I ++ L++ +
Sbjct: 169 SGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNLE 214
Score = 103 bits (259), Expect = 3e-25
Identities = 41/241 (17%), Positives = 94/241 (39%), Gaps = 29/241 (12%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
Q F +D + W++ + +++ED+ +SL E L+++H + + ++ + + E
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKES 62
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
K+I+GQ + +R L W+ L
Sbjct: 63 GEKVIQGQTDPEYLLLGQRLEGLDTG-----------------------------WDALG 93
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
+ R L + F D + + +S+ + ++ E + AEA + + ++
Sbjct: 94 RMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLEPPDSLEAAEAGIRKFEDFL 153
Query: 653 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCM 712
G ++ D D+G L+ + +D I+EK++ +E+ +E +L +
Sbjct: 154 GSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLLRDNL 213
Query: 713 D 713
+
Sbjct: 214 E 214
Score = 78.8 bits (194), Expect = 2e-16
Identities = 23/139 (16%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQA-ASDE 73
+ +R E + + S+ L FQ F++DA + E+ + + A E
Sbjct: 75 YLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLGFQEFQKDAKQAEAILSNQEYTLAHLE 134
Query: 74 SYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRL 133
+A I+K + F + + + ++ ++G +++ + + S+ I+++++ +
Sbjct: 135 PPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDR 194
Query: 134 WELLLSKLAEKGMKLQQAL 152
K E + L+ L
Sbjct: 195 HRKNNEKAQEASVLLRDNL 213
Score = 57.2 bits (138), Expect = 3e-09
Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 939 QQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKA 998
+Q F + ++D + WLS + + SED + L + L ++HA ++ ++ H D + VK
Sbjct: 2 EQAFLQDLDDFQAWLSITQKAVASEDMPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 999 ATEQFLER-GHFDADNIKAKQAAMCERYENLQR 1030
+ E+ ++ + + + + ++ L R
Sbjct: 62 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGR 94
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 165 bits (420), Expect = 3e-47
Identities = 63/182 (34%), Positives = 102/182 (56%)
Query: 362 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR 421
+ RF + RDL+SW+ + I E +DV+ E L++ HQ EI+ R +F
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 422 GTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQ 481
+ G+SLL R H A+++IREKL+ + + + + WE R +++ F RD
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 482 ADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQH 541
A+ W+ QE +L++ D G ++DSVE LIK+HE FEKS A+ E+ AL++ T ++ +
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQ 181
Query: 542 YA 543
A
Sbjct: 182 IA 183
Score = 156 bits (395), Expect = 7e-44
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 14/196 (7%)
Query: 604 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR 663
+ RF + RDL+SW+ + I E +DV+ E L++ HQ EI+ R +F
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 664 GTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQ 723
+ G+SLL R H A+++IREKL+ + + + + WE R +++ F RD
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 724 ADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIK 783
A+ W+ QE +L++ D G ++DSVE LIK+HE FEKS A+ E+
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAER--------------FA 167
Query: 784 ALDEFATKLIEGQHYA 799
AL++ T ++ + A
Sbjct: 168 ALEKPTTLELKERQIA 183
Score = 114 bits (287), Expect = 2e-29
Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Query: 46 SRRFQYFKRDADELESWIYEKL-QAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVV 104
+ F A +L SW+ + Q + E ++ ++++ ++ HQ AE+ S
Sbjct: 3 TADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSA 62
Query: 105 LDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEV 164
G+ ++ + H ASE IR++L+++ + + K + +L+ L + QF R
Sbjct: 63 CLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVA 122
Query: 165 MFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHP 224
W+ +E ++ + +FG ++ VE L ++ + F+K AS R + + + E
Sbjct: 123 EAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQI 182
Query: 225 E 225
Sbjct: 183 A 183
Score = 113 bits (285), Expect = 4e-29
Identities = 33/175 (18%), Positives = 75/175 (42%)
Query: 150 QALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVT 209
+F +++ W+ + E D+ VE+L + ++ ++ +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 210 EVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADE 269
+L + L+ H E I + +++ + + R E+L E+ +F+RDA
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASV 121
Query: 270 TVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRL 324
AW+ ++ L+S ++G + SV+ L ++HE E+ A+ ++ + L
Sbjct: 122 AEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLE 176
Score = 111 bits (279), Expect = 3e-28
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Query: 831 SYKFQQFERDCDETKSWVTEKL-KFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDE 889
+ +F + SW+ + + + D +++ ++ HQ E+
Sbjct: 3 TADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSA 62
Query: 890 ITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDI 949
G+ LL+ H AS++IR++++Q++ + + E + +L+ + F+R
Sbjct: 63 CLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVA 122
Query: 950 ELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHF 1009
E WL E L S D+G + SV+ L K+H E AS +R +++ T L+
Sbjct: 123 EAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQI 182
Query: 1010 D 1010
Sbjct: 183 A 183
Score = 103 bits (259), Expect = 1e-25
Identities = 30/181 (16%), Positives = 72/181 (39%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
+ RF A + ++W+ + + E RD++SV+ L + H+G+ ++ S
Sbjct: 3 TADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFSA 62
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
+ L ++I+ K +++ + + K + R ++L + +F D
Sbjct: 63 CLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVA 122
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
+W+ + +++ + V E L++RH+ + + + F L
Sbjct: 123 EAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQI 182
Query: 437 A 437
A
Sbjct: 183 A 183
Score = 92.7 bits (230), Expect = 1e-21
Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 30/212 (14%)
Query: 468 QCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIK 527
D F+ +WM + ++ + SVE L+K H+ + + +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 528 ALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEY 587
A E L++ QH A++++ ++ ++ R
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSR------------------------------ 91
Query: 588 WERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER 647
+ + K + R ++L + +F D +W+ + +++ + V E L++R
Sbjct: 92 RKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKR 151
Query: 648 HQEHKGEIDAREDSFRGTADAGQSLLDRNHYA 679
H+ + + + F L A
Sbjct: 152 HEAFEKSTASWAERFAALEKPTTLELKERQIA 183
Score = 91.1 bits (226), Expect = 4e-21
Identities = 35/197 (17%), Positives = 75/197 (38%), Gaps = 15/197 (7%)
Query: 710 QCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIK 769
D F+ +WM + ++ + SVE L+K H+ + + +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 770 ALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILE 829
A +L L++ QH A++++ ++ ++ RR + EK R L
Sbjct: 62 ACLEL--------------GESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLR 107
Query: 830 DSYKFQQFERDCDETKSWVTEKLKF-ANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMD 888
+ QF RD ++W+ + + A+ D ++ +++H+ FE+ + R
Sbjct: 108 MLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTASWAERFA 167
Query: 889 EITSTGQELLEANHYAS 905
+ L+ A
Sbjct: 168 ALEKPTTLELKERQIAE 184
Score = 68.0 bits (166), Expect = 3e-13
Identities = 19/95 (20%), Positives = 43/95 (45%)
Query: 935 EASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIE 994
+ + F D+ W+ I Q+ +++ +D++SV+ L K H + A++ +
Sbjct: 2 STADKFRFFSMARDLLSWMESIIRQIETQERPRDVSSVELLMKYHQGINAEIETRSKNFS 61
Query: 995 SVKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029
+ E L+R H ++ I+ K + R + +
Sbjct: 62 ACLELGESLLQRQHQASEEIREKLQQVMSRRKEMN 96
Score = 58.4 bits (141), Expect = 8e-10
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
+ +I+E+ +QV++R + + ++ E+L F RDA E+W+ + +
Sbjct: 78 SEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGD 137
Query: 75 YKETTN-LQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFAS 120
+ T + ++ I++H+AFE A+ + L+ + + A
Sbjct: 138 FGHTVDSVEKLIKRHEAFEKSTASWAERFAALEKPTTLELKERQIAE 184
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 162 bits (411), Expect = 1e-45
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 3/217 (1%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDM-ASQEYRVTEVN 212
L Q R+ D++ WI++KE ++ E G D +HV +L+ KF +F ++ A + RV VN
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 213 QLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVA 272
++L+ GH E TI K+ L+E W L +L R + L ++++ R+ E +
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 273 WIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGI-HSDH 331
I EK L ++ G D ++ ++ R H ER+L L +V A RL +
Sbjct: 123 LIDEKHREL-PEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEK 181
Query: 332 GDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHR 368
+ IQ K E+ W+ L GR+ +L ++ R
Sbjct: 182 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 120 bits (303), Expect = 4e-31
Identities = 47/228 (20%), Positives = 97/228 (42%), Gaps = 14/228 (6%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
L R+T+ + W++++E S+ ++G D V L K DF + +
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFAR-------------E 49
Query: 774 LLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
+ ++ ++ F +LI+ H A +A+ +D L + A LLE R +L SY
Sbjct: 50 TGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYD 109
Query: 834 FQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
++ E + EK + +D LD + + H FE+EL+ ++ +
Sbjct: 110 LHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDV 169
Query: 894 GQELLEANHY-ASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQ 940
L A ++ I+ + +++ W++L A + +L + + +
Sbjct: 170 ATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 217
Score = 117 bits (295), Expect = 6e-30
Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 3/217 (1%)
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA-REDSFRGTA 424
L + + DL W+S+ + + S+ E+ +D L ++ ++ E A ++
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 425 DAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADT 484
+ L+D H A I E L LL L + R L DL ++ +
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 485 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHY-A 543
+ ++ L ED+G + E+ + H FE+ L +++ + AT+L
Sbjct: 123 LIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEK 181
Query: 544 ADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQ 580
A+ + + + LL+ A RR L D+ +
Sbjct: 182 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 113 bits (285), Expect = 1e-28
Identities = 46/214 (21%), Positives = 92/214 (42%), Gaps = 4/214 (1%)
Query: 52 FKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAA-HSNAIVVLDNTG 109
KR+ D+LE WI EK AS ++ ++ K + F E A + ++
Sbjct: 6 LKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFI 65
Query: 110 KEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWIN 169
+ +I+ H + I + + L+ +W LL + + L + L ++ E++ I+
Sbjct: 66 ERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLID 125
Query: 170 DKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPER-ET 228
+K + ++ G D E R F++++ +V + +A +L E+ E
Sbjct: 126 EKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEA 184
Query: 229 IVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQR 262
I +++E+S AW L R+ +L + R
Sbjct: 185 IQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 108 bits (271), Expect = 8e-27
Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 17/231 (7%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA-REDSFRGTA 666
L + + DL W+S+ + + S+ E+ +D L ++ ++ E A ++
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 667 DAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADT 726
+ L+D H A I E L LL L + R L DL ++ +
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 727 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALD 786
+ ++ L ED+G + E+ + H FE+ L Q++
Sbjct: 123 LIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGV--------------QVQQFQ 167
Query: 787 EFATKLIEGQHY-AADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQ 836
+ AT+L A+ + + + LL+ A RR L D+ +
Sbjct: 168 DVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKFR 218
Score = 105 bits (262), Expect = 1e-25
Identities = 48/216 (22%), Positives = 84/216 (38%), Gaps = 3/216 (1%)
Query: 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL-EDKVSTLG 318
+ + R+ D+ WI+EK+ V SS E G+D V L+ K R+ A+ +++V +
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 319 AEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLIS 378
A +RL I + + E W L R Q L SY LHR+ +++
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 379 WVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY-A 437
+ + + +++ D + AE+ H + E+ + D L
Sbjct: 123 LIDEKHRELP-EDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEK 181
Query: 438 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQ 473
A+ I+ K + + LL RR D
Sbjct: 182 AEAIQNKEQEVSAAWQALLDACAGRRTQLVDTADKF 217
Score = 105 bits (262), Expect = 1e-25
Identities = 34/200 (17%), Positives = 84/200 (42%), Gaps = 4/200 (2%)
Query: 834 FQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNANK-TRMDEIT 891
Q +R+ D+ + W++EK A+ D ++ K ++F +E A R+D +
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 892 STGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIEL 951
+ + L++A H + I + + + +W L + + L + + T +I
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILG 122
Query: 952 WLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFD- 1010
+ E + + ED G D ++ ++ + H E ++ +++ + + +
Sbjct: 123 LIDEKH-RELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEK 181
Query: 1011 ADNIKAKQAAMCERYENLQR 1030
A+ I+ K+ + ++ L
Sbjct: 182 AEAIQNKEQEVSAAWQALLD 201
Score = 95.5 bits (237), Expect = 3e-22
Identities = 49/246 (19%), Positives = 91/246 (36%), Gaps = 33/246 (13%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAA-QEEKIKALD 530
L R+T+ + W++++E S+ ++G D V L K DF + A +E++ ++
Sbjct: 3 LFQLKRETDDLEQWISEKELVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 531 EFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWER 590
F +LI+ H A +A+ +D L + A LLE R +L SY
Sbjct: 63 AFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYD------------- 109
Query: 591 LTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQE 650
LHR+ +++ + + + +++ D + AE+ H
Sbjct: 110 -----------------LHRYFYTGAEILGLIDEKHRELP-EDVGLDASTAESFHRVHTA 151
Query: 651 HKGEIDAREDSFRGTADAGQSLLDRNHY-AADDIREKLRNLENDKTHLLTLWEERRILYE 709
+ E+ + D L A+ I+ K + + LL RR
Sbjct: 152 FERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRTQLV 211
Query: 710 QCMDLQ 715
D
Sbjct: 212 DTADKF 217
Score = 80.0 bits (197), Expect = 6e-17
Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 1/143 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
A I E ++ + +AD ++ + L S + E+ I EK + ++
Sbjct: 76 AATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFYTGAEILGLIDEKHRELPEDV 135
Query: 75 YKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNH-FASEVIRKRLEELHRL 133
+ + ++ + H AFE E+ + + + +E I+ + +E+
Sbjct: 136 GLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAA 195
Query: 134 WELLLSKLAEKGMKLQQALVLVQ 156
W+ LL A + +L +
Sbjct: 196 WQALLDACAGRRTQLVDTADKFR 218
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 141 bits (357), Expect = 2e-38
Identities = 50/211 (23%), Positives = 114/211 (54%)
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 425
+H+F D D SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + + D
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485
G+ L D N ++I+++L + L L R E+ ++ Q F + E+ + W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAAD 545
+ ++ +++ED GD+L +++ L+KKHE FE ++++ + LI+ ++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 546 DVAQRRDLLLKRRAGLLEKSARRRAILEDSY 576
++ + L + + L + +A+R+A L+++
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 134 bits (338), Expect = 8e-36
Identities = 67/209 (32%), Positives = 112/209 (53%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
QF R D+ WI +K+ V+++++G DL V+ L++K + ++A+ E + V
Sbjct: 4 QFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTG 63
Query: 216 DKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIA 275
KL + +E I +R + + W LKQLA R ++L + E Q+F + +E AWI
Sbjct: 64 KKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWIN 123
Query: 276 EKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQI 335
EK +++S++YG LA++Q L +KHE E D +D+V+ + A + L ++ H + I
Sbjct: 124 EKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENI 183
Query: 336 QAKRAEIVEYWERLTGKAKGRKQKLDESY 364
AK + L A RK KLDE+
Sbjct: 184 TAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 132 bits (333), Expect = 4e-35
Identities = 50/225 (22%), Positives = 114/225 (50%), Gaps = 14/225 (6%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 667
+H+F D D SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + + D
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 668 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 727
G+ L D N ++I+++L + L L R E+ ++ Q F + E+ + W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 728 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDE 787
+ ++ +++ED GD+L +++ L+KKHE FE ++++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCAN------------- 168
Query: 788 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY 832
LI+ ++ +++ + L + + L + +A+R+A L+++
Sbjct: 169 -GEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 130 bits (327), Expect = 2e-34
Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 1/206 (0%)
Query: 50 QYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
F RD D+ ESWI EK S E Y ++ T +Q +KH+ EAE+AAH AI + +T
Sbjct: 3 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT 62
Query: 109 GKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWI 168
GK++ + N E I++RL + W+ L A +G +L+++L QF+ +E WI
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 122
Query: 169 NDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERET 228
N+K V ++++G L ++ L +K + F+ D + RV +V + L+ + + E
Sbjct: 123 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 182
Query: 229 IVRRKEELSEAWMRLKQLALMRQEKL 254
I + + L L++ A R+ KL
Sbjct: 183 ITAKMKGLKGKVSDLEKAAAQRKAKL 208
Score = 126 bits (319), Expect = 3e-33
Identities = 62/197 (31%), Positives = 106/197 (53%), Gaps = 1/197 (0%)
Query: 835 QQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
QF RD D+ +SW+ EK + ++Y D T + +KH+ E EL A++ + + T
Sbjct: 3 HQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDT 62
Query: 894 GQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWL 953
G++L + N ++I+QR+ Q V W+ L +G +L+E+ + Q F +E+ E W+
Sbjct: 63 GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWI 122
Query: 954 SEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADN 1013
+E + SEDYG L ++Q L KKH E D H DR+ V A E +++ + +N
Sbjct: 123 NEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVEN 182
Query: 1014 IKAKQAAMCERYENLQR 1030
I AK + + +L++
Sbjct: 183 ITAKMKGLKGKVSDLEK 199
Score = 120 bits (302), Expect = 5e-31
Identities = 54/204 (26%), Positives = 117/204 (57%)
Query: 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGA 319
+ +F RD D+ +WI EK ++SS++YGRDL VQ L++KH+ +E +LAA E + ++
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 320 EADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISW 379
+L ++ ++IQ + A+ V++W+ L A R Q+L+ES +F+A+ + +W
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAW 121
Query: 380 VSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAAD 439
+++ ++++++ +A + LL++H+ + + +D G+ L+ +N++ +
Sbjct: 122 INEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVE 181
Query: 440 DIREKLRNLENDKTHLLTLWEERR 463
+I K++ L+ + L +R+
Sbjct: 182 NITAKMKGLKGKVSDLEKAAAQRK 205
Score = 120 bits (301), Expect = 8e-31
Identities = 58/225 (25%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
+ F+RD + ++W+ +++ +S+ED G L V+ L KKH+ E LAA E I+++ D
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 774 LLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
KL + +++ QR + L + +A R LE+S +
Sbjct: 62 T--------------GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 107
Query: 834 FQQFERDCDETKSWVTEKLKF-ANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
+QQF + +E ++W+ EK+ A++D + G ++KH+ FE + +K R++++ +
Sbjct: 108 YQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCA 167
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEAS 937
G++L++ N++ + I +M+ + L A ++ KL E S
Sbjct: 168 NGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDENS 212
Score = 108 bits (271), Expect = 8e-27
Identities = 48/234 (20%), Positives = 108/234 (46%), Gaps = 30/234 (12%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDE 531
+ F+RD + ++W+ +++ +S+ED G L V+ L KKH+ E LAA E I+++ +
Sbjct: 2 VHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 532 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERL 591
KL + +++ QR + W+ L
Sbjct: 62 TGKKLSDDNTIGKEEIQQRLAQFVDH------------------------------WKEL 91
Query: 592 TGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEH 651
A R Q+L+ES +F+A+ + +W+++ ++++++ +A + LL++H+
Sbjct: 92 KQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAF 151
Query: 652 KGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 705
+ + +D G+ L+ +N++ ++I K++ L+ + L +R+
Sbjct: 152 ETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRK 205
Score = 79.2 bits (195), Expect = 1e-16
Identities = 37/139 (26%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
+IQ+R Q ++ + + K A ++ ++LE+S +Q F + +E E+WI EK+ + E
Sbjct: 74 KEEIQQRLAQFVDHWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASED 133
Query: 75 YKET-TNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRL 133
Y +T +Q ++KH+AFE + H + + + G+++I +N+ E I +++ L
Sbjct: 134 YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGK 193
Query: 134 WELLLSKLAEKGMKLQQAL 152
L A++ KL +
Sbjct: 194 VSDLEKAAAQRKAKLDENS 212
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 145 bits (366), Expect = 3e-37
Identities = 38/298 (12%), Positives = 106/298 (35%), Gaps = 18/298 (6%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
+ + E + W+ ++ A + +G DLASV+ H G+ + ++
Sbjct: 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDK 60
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
+ A+ + ++ ++ E +E L + R L + L +
Sbjct: 61 IKADL------------REKSAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSRE 105
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
I W++D + + + E +++ +E L+ H
Sbjct: 106 IMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHP 165
Query: 437 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNE 496
A+D I + L+ + +L + + + ++ F+ + + + ++ + + +
Sbjct: 166 ASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKK 225
Query: 497 DLG---DSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRR 551
L + IK+ E + + + +++ L + K+++ + D + +
Sbjct: 226 YPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKP 283
Score = 145 bits (366), Expect = 4e-37
Identities = 63/478 (13%), Positives = 144/478 (30%), Gaps = 65/478 (13%)
Query: 50 QYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNT 108
++ K E W+ ++ ++ + +++ I H+ + + +
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQL------ 58
Query: 109 GKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWI 168
A + + +L +E LL E+ L+Q L I+ + WI
Sbjct: 59 ------DKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSREIMWI 109
Query: 169 NDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERET 228
ND E ++ ++ Q F + +E + ++ Q +D+LVL HP +
Sbjct: 110 NDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDK 169
Query: 229 IVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGR 288
I + L W + Q+ L +F +A T A++ +
Sbjct: 170 IEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCD 229
Query: 289 DLASVQTLQ---RKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEY 345
+Q L ++ E + + +V L ++ ++ + + D K +
Sbjct: 230 KNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRAL 289
Query: 346 WERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER 405
+ + K + L D + W + + V ++
Sbjct: 290 CDYKQDQKIVHK---GDECILK----DNNERSKWY-----VTGPGGVDMLVPSVGLIIPP 337
Query: 406 HQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRIL 465
+ +E +L LW + I
Sbjct: 338 PN-------------------------------PLAVDLSCKIEQYYEAILALWNQLYIN 366
Query: 466 YEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQE 523
+ + D E+ + + ED ++ +E +++F ++ E
Sbjct: 367 MKSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTIADLE---LHYQEFIRNSQGSE 421
Score = 126 bits (318), Expect = 4e-31
Identities = 39/304 (12%), Positives = 94/304 (30%), Gaps = 45/304 (14%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
+ T + WM +Q A + G L SVE I H S+ ++ +
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKI--- 61
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
D + ++ E +E L
Sbjct: 62 ---------------------------------------KADLREKSAIYQLEEEYENLL 82
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
+ R L + L + I W++D + + + E
Sbjct: 83 KASFERMDHLRQ---LQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRM 139
Query: 653 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCM 712
+++ +E L+ H A+D I + L+ + +L + + + ++
Sbjct: 140 SQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENA 199
Query: 713 DLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 772
F+ + + + ++ + + + D ++ L+++ ++ EK E + +
Sbjct: 200 AYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQ 259
Query: 773 DLLK 776
+L+
Sbjct: 260 NLVN 263
Score = 124 bits (313), Expect = 2e-30
Identities = 48/289 (16%), Positives = 94/289 (32%), Gaps = 30/289 (10%)
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
+ T + WM +Q A + G L SVE I H S+ ++ +
Sbjct: 5 EFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKI--- 61
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF 834
A L + LL+ S R L
Sbjct: 62 -----------------------KADLREKSAIYQLEEEYENLLKASFERMDHLRQ---L 95
Query: 835 QQFERDCDETKSWVTEKLKFANDDNYLDP-TNLNGKVQKHQNFEQELNANKTRMDEITST 893
Q + W+ + + ++ D TN+ K + +L + ++++
Sbjct: 96 QNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQE 155
Query: 894 GQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWL 953
+L+ H ASDKI M+ + W + T+ L+E + F + E +L
Sbjct: 156 SDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYL 215
Query: 954 SEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQ 1002
++ + + +Q+L ++ LE + L+ V+ +
Sbjct: 216 KGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNK 264
Score = 113 bits (284), Expect = 1e-26
Identities = 43/320 (13%), Positives = 106/320 (33%), Gaps = 33/320 (10%)
Query: 605 SYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRG 664
S + + + W+ +A + D+A E + H+ I
Sbjct: 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLD- 59
Query: 665 TADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQA 724
A + + LE + +LL ER Q LQ + T +
Sbjct: 60 -----------KIKADLREKSAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSRE 105
Query: 725 DTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKA 784
W+ E D D ++ + L +E+++ L
Sbjct: 106 IMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQE---------- 155
Query: 785 LDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDET 844
+ +L+ QH A+D + D L + + +L+ + L+++ + QF + T
Sbjct: 156 ----SDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQST 211
Query: 845 KSWVTEKLKFANDDNYLDP----TNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEA 900
++++ D +L ++++ + +++ K ++ + + +++++
Sbjct: 212 EAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQL 271
Query: 901 NHYASDKIRQRMEQIVHLWE 920
D + + L +
Sbjct: 272 KPRNPDYRSNKPIILRALCD 291
Score = 107 bits (268), Expect = 1e-24
Identities = 62/441 (14%), Positives = 138/441 (31%), Gaps = 58/441 (13%)
Query: 363 SYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRG 422
S + + + W+ +A + D+A E + H+ I
Sbjct: 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLD- 59
Query: 423 TADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQA 482
A + + LE + +LL ER Q LQ + T +
Sbjct: 60 -----------KIKADLREKSAIYQLEEEYENLLKASFERMDHLRQ---LQNIIQATSRE 105
Query: 483 DTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHY 542
W+ E D D ++ + L +E+++ L + + +L+ QH
Sbjct: 106 IMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHP 165
Query: 543 AADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIV---EYWERLTGKAKGRK 599
A+D + D L + + +L+ + L+++ + QF E E + + + +K
Sbjct: 166 ASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKK 225
Query: 600 QKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEI---- 655
D++ L L ++L + ++ V ++ +++ +
Sbjct: 226 YPCDKNMPLQHLLEQIKELEKEREKILE--YKRQVQNLVNKSKKIVQLKPRNPDYRSNKP 283
Query: 656 -------DAREDSFRGTADAGQSLLDRNHYAADDIR------------------------ 684
D ++D L D N + +
Sbjct: 284 IILRALCDYKQDQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAV 343
Query: 685 EKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSL 744
+ +E +L LW + I + + D E+ + + ED ++
Sbjct: 344 DLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLKTMRQEDYMKTI 403
Query: 745 DSVEALIKKHEDFEKSLAAQE 765
+E +++F ++ E
Sbjct: 404 ADLE---LHYQEFIRNSQGSE 421
Score = 97.5 bits (242), Expect = 2e-21
Identities = 28/235 (11%), Positives = 76/235 (32%), Gaps = 6/235 (2%)
Query: 8 EVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKL 67
++ ++ + Q+ Y + + + + L + + WI +
Sbjct: 57 QLDKIKADLREKSAIYQLEEEYENLLKASFERMDHLRQLQNII---QATSREIMWINDCE 113
Query: 68 QAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKR 126
+ + + TN+ K + +++ + L +++ H AS+ I
Sbjct: 114 EEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAY 173
Query: 127 LEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEH 186
++ L W +L + L++ QF + ++ + +
Sbjct: 174 MDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMP 233
Query: 187 VEVLQRKFDEFQKDMASQEYRVTEVNQLAD--KLVLEGHPERETIVRRKEELSEA 239
++ L + E +K+ +V L + K +++ P K + A
Sbjct: 234 LQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRA 288
Score = 82.1 bits (202), Expect = 2e-16
Identities = 24/200 (12%), Positives = 80/200 (40%), Gaps = 16/200 (8%)
Query: 831 SYKFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNANKTRMDE 889
S + + E W+ ++ + + +D ++ + H+ + + ++D+
Sbjct: 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDK 60
Query: 890 ITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDI 949
I + +E + + Q+ +E+L A+ ++ + L++ +
Sbjct: 61 IKADLRE------------KSAIYQLEEEYENLLKASFERMDHLRQLQN---IIQATSRE 105
Query: 950 ELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHF 1009
+W+++ E + + D+ T++ Q+ ++ + + + +K ++Q + H
Sbjct: 106 IMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVLNQHP 165
Query: 1010 DADNIKAKQAAMCERYENLQ 1029
+D I+A + ++ +
Sbjct: 166 ASDKIEAYMDTLQTQWSWIL 185
Score = 48.2 bits (114), Expect = 1e-05
Identities = 12/125 (9%), Positives = 47/125 (37%), Gaps = 4/125 (3%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
++ I+ + + +++ + L+++ + F +A E+++ + +
Sbjct: 167 SDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKY 226
Query: 75 YKE----TTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEEL 130
+ +L +I++ + ++ + + L N K+++ + + L
Sbjct: 227 PCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPIIL 286
Query: 131 HRLWE 135
L +
Sbjct: 287 RALCD 291
Score = 34.7 bits (79), Expect = 0.17
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 9 VKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQ 68
+ I + ++ Y + ++ + Y D +++ + KL+
Sbjct: 333 LIIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAMTIAKLK 392
Query: 69 AASDESYKET-TNLQAKIQK 87
E Y +T +L+ Q+
Sbjct: 393 TMRQEDYMKTIADLELHYQE 412
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 132 bits (333), Expect = 4e-35
Identities = 52/212 (24%), Positives = 104/212 (49%)
Query: 366 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 425
F +D W+S+++A++++++ KD+A LL++HQ + +I A ED +
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 426 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 485
SL+ + + +++K + + ++ RR + L F+RD + ++W
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESW 124
Query: 486 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAAD 545
+ +++ +S+ED G L V+ L KKH+ E LAA E I+ + + KL + +
Sbjct: 125 IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKE 184
Query: 546 DVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 577
++ QR + L + +A R LE+S +
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 126 bits (318), Expect = 4e-33
Identities = 64/210 (30%), Positives = 120/210 (57%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQ 213
F + FW+++ EA + ++++G DL V L +K + D+++ E R+ ++N
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 214 LADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAW 273
AD L+ + + ++E ++ + R+K +A R+ KL +H + +F RD D+ +W
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESW 124
Query: 274 IAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGD 333
I EK ++SS++YGRDL VQ L++KH+ +E +LAA E + + +L ++ +
Sbjct: 125 IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKE 184
Query: 334 QIQAKRAEIVEYWERLTGKAKGRKQKLDES 363
+IQ + A+ V++W+ L A R Q+L+ES
Sbjct: 185 EIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Score = 123 bits (311), Expect = 3e-32
Identities = 52/208 (25%), Positives = 108/208 (51%), Gaps = 1/208 (0%)
Query: 48 RFQYFKRDADELESWIYEK-LQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLD 106
+ Q F + + W+ E AS++ K+ ++ ++KHQ EA+++AH + + L+
Sbjct: 4 KQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLN 63
Query: 107 NTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMF 166
+ ++ + F + ++ + E ++ ++ + S A + KL ++ L QF R D+
Sbjct: 64 SQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEES 123
Query: 167 WINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPER 226
WI +K+ V+++++G DL V+ L++K + ++A+ E + V KL + +
Sbjct: 124 WIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGK 183
Query: 227 ETIVRRKEELSEAWMRLKQLALMRQEKL 254
E I +R + + W LKQLA R ++L
Sbjct: 184 EEIQQRLAQFVDHWKELKQLAAARGQRL 211
Score = 123 bits (310), Expect = 5e-32
Identities = 53/226 (23%), Positives = 104/226 (46%), Gaps = 14/226 (6%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTAD 667
F +D W+S+++A++++++ KD+A LL++HQ + +I A ED +
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 668 AGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTW 727
SL+ + + +++K + + ++ RR + L F+RD + ++W
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESW 124
Query: 728 MAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDE 787
+ +++ +S+ED G L V+ L KKH+ E LAA E I+ + D
Sbjct: 125 IKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDT------------- 171
Query: 788 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
KL + +++ QR + L + +A R LE+S +
Sbjct: 172 -GKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 122 bits (307), Expect = 1e-31
Identities = 67/215 (31%), Positives = 124/215 (57%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
A++ Q FN + W++E +A+L+S++YG+DLASV L +KH+ +E D++A ED++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDL 376
L ++AD L + Q++ KR I ++R+ A R+ KL+ES+ LH+F D D
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDE 121
Query: 377 ISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHY 436
SW+ + K ++S+++ +D+ G + L ++H+ + E+ A E + +G D G+ L D N
Sbjct: 122 ESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTI 181
Query: 437 AADDIREKLRNLENDKTHLLTLWEERRILYEQCMD 471
++I+++L + L L R E+ ++
Sbjct: 182 GKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 120 bits (302), Expect = 7e-31
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 15/226 (6%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHED------- 57
Query: 774 LLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 833
++K L+ A L+ + V +R+ + R + +A RRA L +S++
Sbjct: 58 -------RLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHR 110
Query: 834 FQQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNANKTRMDEITS 892
QF RD D+ +SW+ EK + ++Y D T + +KH+ E EL A++ + +
Sbjct: 111 LHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLD 170
Query: 893 TGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQ 938
TG++L + N ++I+QR+ Q V W+ L +G +L+E+ +
Sbjct: 171 TGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE 216
Score = 118 bits (297), Expect = 3e-30
Identities = 52/200 (26%), Positives = 107/200 (53%), Gaps = 1/200 (0%)
Query: 832 YKFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNANKTRMDEI 890
K Q F + W++E ++Y D ++N ++KHQ E +++A++ R+ ++
Sbjct: 3 NKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDL 62
Query: 891 TSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIE 950
S L+ ++ + + +++ + E I ++ + + + KL E+ + F R ++D E
Sbjct: 63 NSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEE 122
Query: 951 LWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFD 1010
W+ E + + SEDYG+DLT VQNL+KKH LEA++A+H I+ V ++ +
Sbjct: 123 SWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIG 182
Query: 1011 ADNIKAKQAAMCERYENLQR 1030
+ I+ + A + ++ L++
Sbjct: 183 KEEIQQRLAQFVDHWKELKQ 202
Score = 113 bits (284), Expect = 2e-28
Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDE 531
Q F + D W+++ EA L++ED G L SV L+KKH+ E ++A E+++K L+
Sbjct: 5 QQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 64
Query: 532 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERL 591
A L+ + V +R+ + R ++R+
Sbjct: 65 QADSLMTSSAFDTSQVKDKRETINGR------------------------------FQRI 94
Query: 592 TGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEH 651
A R+ KL+ES+ LH+F D D SW+ + K ++S+++ +D+ G + L ++H+
Sbjct: 95 KSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRL 154
Query: 652 KGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQC 711
+ E+ A E + +G D G+ L D N ++I+++L + L L R E+
Sbjct: 155 EAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEES 214
Query: 712 MD 713
++
Sbjct: 215 LE 216
Score = 82.7 bits (204), Expect = 6e-18
Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDES 74
+ ++++RE + R+ KS A ++R KL +S R F RD D+ ESWI EK S E
Sbjct: 77 TSQVKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSED 136
Query: 75 Y-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRL 133
Y ++ T +Q +KH+ EAE+AAH AI + +TGK++ + N E I++RL +
Sbjct: 137 YGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDH 196
Query: 134 WELLLSKLAEKGMKLQQAL 152
W+ L A +G +L+++L
Sbjct: 197 WKELKQLAAARGQRLEESL 215
Score = 78.4 bits (193), Expect = 2e-16
Identities = 41/97 (42%), Positives = 62/97 (63%)
Query: 936 ASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIES 995
A++QQ FN I+D + WLSE+E L SEDYGKDL SV NL KKH LLEAD+++H DR++
Sbjct: 2 ANKQQNFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKD 61
Query: 996 VKAATEQFLERGHFDADNIKAKQAAMCERYENLQRPI 1032
+ + + + FD +K K+ + R++ ++
Sbjct: 62 LNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMA 98
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 140 bits (352), Expect = 6e-34
Identities = 65/510 (12%), Positives = 185/510 (36%), Gaps = 26/510 (5%)
Query: 441 IREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGD 500
+ +T + + + E ++ + + W+ + +L N +
Sbjct: 221 FYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPEN 280
Query: 501 SLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAG 560
++ +++ ++ D+ + K+ E + + L L R
Sbjct: 281 TMQAMQQKLEDFRDYRR------------LHKPPKVQEKCQLEINFNTLQTKLRLSNRPA 328
Query: 561 LLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLIS 620
+ + + + + + E+ + +E R ++LD +F S
Sbjct: 329 FMPSEGKMVSDINN--AWGGLEQAEKGYEEWLLNEIRRLERLDHL--AEKFRQKASIHES 384
Query: 621 WVSDMKAIISADE-LAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYA 679
W +A++ + ++ +ALL++H+ + ++ A +D A Q L + ++Y
Sbjct: 385 WTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYD 444
Query: 680 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQ--------LFYRDTEQADTWMAKQ 731
+ + + + + + +L L ++RR E+ L + + + WM
Sbjct: 445 SPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGA 504
Query: 732 EAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATK 791
L + + +++ ++ L HE F+ +L +++ +A+ + + ++
Sbjct: 505 MEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAG 564
Query: 792 LIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK-FQQFERDCDETKSWVTE 850
++ + + + + + A + + + +QF + W+
Sbjct: 565 TNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQT 624
Query: 851 KLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQ 910
K++ + L ++ + +E+ + K ++D++ Q++ EA + +
Sbjct: 625 KMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNY 684
Query: 911 RMEQIVHLWESLATATEKKGNKLQEASQQQ 940
ME I WE L T + N+++ +
Sbjct: 685 TMEHIRVGWEQLLTTIARTINEVENQILTR 714
Score = 133 bits (334), Expect = 8e-32
Identities = 78/562 (13%), Positives = 177/562 (31%), Gaps = 49/562 (8%)
Query: 8 EVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKL 67
E I+ + + E+ + + +++ A +L WI +
Sbjct: 211 EKAIMTYVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTI 270
Query: 68 QAASDESYKET-TNLQAKIQKHQAF-----EAEVAAHSNAIVVLDNTGKEMINQNHFA-- 119
+ + + T +Q K++ + + +V + + ++ N A
Sbjct: 271 PWLENRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFM 330
Query: 120 ------SEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQ-FIRQCDEVMFWINDKE 172
I L + + L + +L++ L + F ++ W + KE
Sbjct: 331 PSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHESWTDGKE 390
Query: 173 AFVTADEF-GADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVR 231
A + ++ A L ++ L +K + F+ D+A+ + RV ++ +A +L + + ++
Sbjct: 391 AMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNA 450
Query: 232 RKEELSEAWMRLKQLALMRQEKLFGAHEIQR--------FNRDADETVAWIAEKDAVLSS 283
R +++ + W L L R+E L ++ + + A W+ L
Sbjct: 451 RCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQD 510
Query: 284 DEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKR---- 339
+ +Q L HE + L + + + + + I + +
Sbjct: 511 TFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTT 570
Query: 340 ---AEIVEYWERLTGKAKGRKQKLDESY--------YLHRFLADYRDLISWVSDMKAIIS 388
EI WE + R Q L E + +F A + W+ I
Sbjct: 571 ITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERLRKQFGAQANVIGPWIQTKMEEIG 630
Query: 389 ADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNL 448
+ E L ++++ I + Q + + + + ++
Sbjct: 631 RISIEMHGT-LEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIFDNKHTNYTMEHI 689
Query: 449 ENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEAL 508
LLT E Q+ RD + + + D +
Sbjct: 690 RVGWEQLLTTIARTINEVEN----QILTRDAKGISQEQMNEF-----RASFNHFDRKKTG 740
Query: 509 IKKHEDFEKSLAAQEEKIKALD 530
+ EDF L + + +
Sbjct: 741 MMDCEDFRACLISMGYNMGEAE 762
Score = 99.2 bits (246), Expect = 3e-21
Identities = 48/360 (13%), Positives = 128/360 (35%), Gaps = 14/360 (3%)
Query: 683 IREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGD 742
+ +T + + + E ++ + + W+ + +L N +
Sbjct: 221 FYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENRAPEN 280
Query: 743 SLDSVEALIKKHEDFEKSLA-AQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAA- 800
++ +++ ++ D+ + + ++ L+ +++ + A EG+ +
Sbjct: 281 TMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDI 340
Query: 801 DDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNY 860
++ + K L RR L+ + ++F + +SW K +Y
Sbjct: 341 NNAWGGLEQAEKGYEEWLLNEIRRLERLD--HLAEKFRQKASIHESWTDGKEAMLQQKDY 398
Query: 861 L--DPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHL 918
+ + ++KH+ FE +L A++ R+++I + QEL E ++Y S + R ++I
Sbjct: 399 ETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQ 458
Query: 919 WESLATATEKKGNKLQEASQQQ--------GFNRTIEDIELWLSEIEGQLMSEDYGKDLT 970
W++L T+K+ L+ + + + W+ L +
Sbjct: 459 WDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIE 518
Query: 971 SVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030
+Q L H +A + +++ + + N+ + +
Sbjct: 519 EIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEING 578
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 125 bits (314), Expect = 3e-33
Identities = 69/144 (47%), Positives = 91/144 (63%)
Query: 9 VKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQ 68
K+LETA +IQERR++VL RY FK + +KLEDS Q FKRDAD+L WI EK+
Sbjct: 18 PKVLETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVN 77
Query: 69 AASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLE 128
+D+SY++ TN+Q K QKHQ+ EAEV S + L+ T +E H A E + +E
Sbjct: 78 ILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIE 137
Query: 129 ELHRLWELLLSKLAEKGMKLQQAL 152
EL LW+LLL EKG +L +AL
Sbjct: 138 ELRHLWDLLLELTLEKGDQLLRAL 161
Score = 113 bits (283), Expect = 5e-29
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 781 QIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERD 840
+ ++ K++E A+++ +RR +L R E+ A R LEDSY Q F+RD
Sbjct: 9 KETVVESSGPKVLE----TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRD 64
Query: 841 CDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEA 900
D+ W+ EK+ D +Y DPTN+ GK QKHQ+ E E+ M E+ T +E
Sbjct: 65 ADDLGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTM 124
Query: 901 NHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEA 936
H A ++ + +E++ HLW+ L T +KG++L A
Sbjct: 125 GHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 81.9 bits (202), Expect = 3e-18
Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 120 SEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADE 179
+E I++R +E+ ++ ++AE+G KL+ + L F R D++ WI +K +T D+
Sbjct: 24 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILT-DK 82
Query: 180 FGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEA 239
D +++ +K + ++ ++ ++E+ + ++ GH E EEL
Sbjct: 83 SYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 142
Query: 240 WMRLKQLALMRQEKLFGA 257
W L +L L + ++L A
Sbjct: 143 WDLLLELTLEKGDQLLRA 160
Score = 79.2 bits (195), Expect = 3e-17
Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 1/138 (0%)
Query: 438 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNED 497
A++I+E+ + + ER E LQ+F RD + W+ ++ L+++
Sbjct: 24 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS 83
Query: 498 LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKR 557
D +++ +KH+ E + + + L++ + H A ++ + L
Sbjct: 84 YED-PTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHL 142
Query: 558 RAGLLEKSARRRAILEDS 575
LLE + + L +
Sbjct: 143 WDLLLELTLEKGDQLLRA 160
Score = 78.8 bits (194), Expect = 4e-17
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 5/160 (3%)
Query: 204 QEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRF 263
Q + T V K++ E I R++E+ + K+ R +KL ++ +Q F
Sbjct: 6 QFPKETVVESSGPKVL----ETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVF 61
Query: 264 NRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADR 323
RDAD+ WI EK +L+ Y D ++Q +KH+ +E ++ +S L +
Sbjct: 62 KRDADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREE 120
Query: 324 LCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDES 363
+ ++ +A E+ W+ L + +L +
Sbjct: 121 RFTMGHSAHEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
Score = 77.3 bits (190), Expect = 1e-16
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 1/138 (0%)
Query: 333 DQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADEL 392
++IQ +R E++ ++ + R QKL++SY+L F D DL W+ + K I D+
Sbjct: 25 EEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIME-KVNILTDKS 83
Query: 393 AKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDK 452
+D + ++HQ + E+ + + H A ++ + + L +
Sbjct: 84 YEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLW 143
Query: 453 THLLTLWEERRILYEQCM 470
LL L E+ + +
Sbjct: 144 DLLLELTLEKGDQLLRAL 161
Score = 77.3 bits (190), Expect = 1e-16
Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 886 RMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRT 945
+ + S+G ++LE +++I++R ++++ ++S ++G KL+++ Q F R
Sbjct: 9 KETVVESSGPKVLET----AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRD 64
Query: 946 IEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLE 1005
+D+ W+ E L + Y +D T++Q +KH LEA+V + + ++ E+
Sbjct: 65 ADDLGKWIMEKVNILTDKSY-EDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFT 123
Query: 1006 RGHFDADNIKAKQAAMCERYENLQ 1029
GH + KA + ++ L
Sbjct: 124 MGHSAHEETKAHIEELRHLWDLLL 147
Score = 71.5 bits (175), Expect = 1e-14
Identities = 38/195 (19%), Positives = 67/195 (34%), Gaps = 35/195 (17%)
Query: 518 SLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYK 577
S Q K ++ K++E A+++ +RR +L R E+ A R LEDSY
Sbjct: 2 SGMEQFPKETVVESSGPKVLE----TAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYH 57
Query: 578 FQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKD 637
Q F D DL W+ + K I D+ +D
Sbjct: 58 LQV------------------------------FKRDADDLGKWIME-KVNILTDKSYED 86
Query: 638 VAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHL 697
+ ++HQ + E+ + + H A ++ + + L + L
Sbjct: 87 PTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMGHSAHEETKAHIEELRHLWDLL 146
Query: 698 LTLWEERRILYEQCM 712
L L E+ + +
Sbjct: 147 LELTLEKGDQLLRAL 161
Score = 70.4 bits (172), Expect = 4e-14
Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 680 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNED 739
A++I+E+ + + ER E LQ+F RD + W+ ++ L+++
Sbjct: 24 AEEIQERRQEVLTRYQSFKERVAERGQKLEDSYHLQVFKRDADDLGKWIMEKVNILTDKS 83
Query: 740 LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYA 799
D +++ +KH+ E + + + L++ + H A
Sbjct: 84 YED-PTNIQGKYQKHQSLEAEVQTKSR--------------LMSELEKTREERFTMGHSA 128
Query: 800 ADDVAQRRDLLLKRRAGLLEKSARRRAILEDS 831
++ + L LLE + + L +
Sbjct: 129 HEETKAHIEELRHLWDLLLELTLEKGDQLLRA 160
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 126 bits (317), Expect = 3e-32
Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 6/222 (2%)
Query: 145 GMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQ 204
G ++ L F+ + + W+N+KE ++ ++ + + +++ +
Sbjct: 1 GSHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELK 60
Query: 205 EYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFN 264
E ++ E+ D+L+ E HP R T+ + L W + QL + L +F
Sbjct: 61 EKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFF 120
Query: 265 RDADETVAWIAEKDAVL---SSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEA 321
D E + + L S + + ++ L + + + L + +S L A
Sbjct: 121 SDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRA 180
Query: 322 DRLCGIHSDHGDQIQAKRAEIV---EYWERLTGKAKGRKQKL 360
+ + H R ++ +Y + KG + +L
Sbjct: 181 KAVVQLKPRHPAHPMRGRLPLLAVCDYKQVEVTVHKGDECQL 222
Score = 115 bits (289), Expect = 1e-28
Identities = 31/197 (15%), Positives = 75/197 (38%), Gaps = 3/197 (1%)
Query: 358 QKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARE 417
+ LH F+A + W+++ + + + A E + E++ +E
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 418 DSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYR 477
+ +AG LL +H A + L+ + +L L ++ F+
Sbjct: 62 KKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFS 121
Query: 478 DTEQADTWMAKQEAFL---SNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFAT 534
D +A+ + K + L + D ++ +E L++ +D ++ L + + L + A
Sbjct: 122 DVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAK 181
Query: 535 KLIEGQHYAADDVAQRR 551
+++ + + R
Sbjct: 182 AVVQLKPRHPAHPMRGR 198
Score = 114 bits (286), Expect = 4e-28
Identities = 29/177 (16%), Positives = 67/177 (37%), Gaps = 3/177 (1%)
Query: 600 QKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARE 659
+ LH F+A + W+++ + + + A E + E++ +E
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 660 DSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYR 719
+ +AG LL +H A + L+ + +L L ++ F+
Sbjct: 62 KKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFS 121
Query: 720 DTEQADTWMAKQEAFL---SNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDD 773
D +A+ + K + L + D ++ +E L++ +D ++ L + + L
Sbjct: 122 DVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAK 178
Score = 108 bits (270), Expect = 5e-26
Identities = 31/200 (15%), Positives = 68/200 (34%), Gaps = 4/200 (2%)
Query: 41 EKLEDSRRFQYFKRDADELESWIYEKLQAASDESY-KETTNLQAKIQKHQAFEAEVAAHS 99
+ F A + W+ EK + + TN+ AK + + A E+
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 100 NAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIR 159
I L N G ++ ++H A + L W +L L++ QF
Sbjct: 62 KKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFS 121
Query: 160 QCDEVMFWINDKEAFV---TADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLAD 216
E + + + + + A + +E L + + ++ + + ++ + + A
Sbjct: 122 DVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAK 181
Query: 217 KLVLEGHPERETIVRRKEEL 236
+V +R + L
Sbjct: 182 AVVQLKPRHPAHPMRGRLPL 201
Score = 103 bits (259), Expect = 1e-24
Identities = 26/183 (14%), Positives = 65/183 (35%), Gaps = 4/183 (2%)
Query: 828 LEDSYKFQQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNANKTR 886
+ F + W+ EK + ++ TN+ K + + +EL + +
Sbjct: 4 MRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKK 63
Query: 887 MDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTI 946
+ E+ + G LL +H A + + W + L+E + F +
Sbjct: 64 IKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDV 123
Query: 947 EDIELWLSEIEGQLM---SEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQF 1003
+ E L +++ L S D +T +++L + + + + + + +
Sbjct: 124 REAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAV 183
Query: 1004 LER 1006
++
Sbjct: 184 VQL 186
Score = 97.8 bits (243), Expect = 2e-22
Identities = 32/215 (14%), Positives = 75/215 (34%), Gaps = 18/215 (8%)
Query: 709 EQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKI 768
L F + W+ ++E D D ++ A + + + L +E+
Sbjct: 5 RSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEK-- 62
Query: 769 KALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAIL 828
+IK L +L+ H A V + L + + +L+ A L
Sbjct: 63 ------------KIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHL 110
Query: 829 EDSYKFQQFERDCDETKSWVTEKLKF----ANDDNYLDPTNLNGKVQKHQNFEQELNANK 884
+++ + QF D E + + + + + D T L +Q Q+ +++LN K
Sbjct: 111 KENAAYFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYK 170
Query: 885 TRMDEITSTGQELLEANHYASDKIRQRMEQIVHLW 919
+ + + +++ + ++ +
Sbjct: 171 GHLSGLAKRAKAVVQLKPRHPAHPMRGRLPLLAVC 205
Score = 97.8 bits (243), Expect = 2e-22
Identities = 29/202 (14%), Positives = 71/202 (35%), Gaps = 3/202 (1%)
Query: 252 EKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALE 311
+ + F A + + W+ EK+ ++ ++ + + + R+L E
Sbjct: 2 SHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKE 61
Query: 312 DKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLA 371
K+ L DRL +++ +A + W + + L E+ +F +
Sbjct: 62 KKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFS 121
Query: 372 DYRDLISWVSDMKAIISA---DELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428
D R+ + ++ + + + V E LL+ Q+ K +++ + G A +
Sbjct: 122 DVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAK 181
Query: 429 SLLDRNHYAADDIREKLRNLEN 450
+++ L
Sbjct: 182 AVVQLKPRHPAHPMRGRLPLLA 203
Score = 87.8 bits (217), Expect = 4e-19
Identities = 34/229 (14%), Positives = 74/229 (32%), Gaps = 33/229 (14%)
Query: 467 EQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKI 526
L F + W+ ++E D D ++ A + + + L +E+KI
Sbjct: 5 RSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKI 64
Query: 527 KALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVE 586
K L +L+ H A V + L + + +L+ A L+++ + Q
Sbjct: 65 KELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQ------ 118
Query: 587 YWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISA---DELAKDVAGAEA 643
F +D R+ + ++ + + + V E
Sbjct: 119 ------------------------FFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLED 154
Query: 644 LLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLEN 692
LL+ Q+ K +++ + G A ++++ L
Sbjct: 155 LLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHPAHPMRGRLPLLA 203
Score = 71.6 bits (175), Expect = 1e-13
Identities = 16/100 (16%), Positives = 45/100 (45%)
Query: 930 GNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASH 989
G+ ++ F +WL+E E + + D+ T++ ++ ++ L ++
Sbjct: 1 GSHMRSLESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELK 60
Query: 990 LDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029
+I+ ++ A ++ L H +++ QAA+ ++ +
Sbjct: 61 EKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWML 100
Score = 55.1 bits (132), Expect = 4e-08
Identities = 14/124 (11%), Positives = 40/124 (32%), Gaps = 4/124 (3%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQA----A 70
++ + + +++ L+++ + F D E E + + +A
Sbjct: 82 RPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAYFQFFSDVREAEGQLQKLQEALRRKY 141
Query: 71 SDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEEL 130
S + T L+ +Q Q + ++ + + L K ++ + L
Sbjct: 142 SCDRSATVTRLEDLLQDAQDEKEQLNEYKGHLSGLAKRAKAVVQLKPRHPAHPMRGRLPL 201
Query: 131 HRLW 134
+
Sbjct: 202 LAVC 205
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 121 bits (304), Expect = 5e-32
Identities = 98/144 (68%), Positives = 115/144 (79%)
Query: 7 KEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEK 66
VK+LETA DIQERR+QVL+RY FK + +R+KLEDS RFQ+F+RDA+ELE WI EK
Sbjct: 6 SGVKVLETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEK 65
Query: 67 LQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKR 126
LQ ASDE+YK+ TNLQ K+QKHQAFEAEV A+S AIV LD TG MI++ HFASE IR R
Sbjct: 66 LQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTR 125
Query: 127 LEELHRLWELLLSKLAEKGMKLQQ 150
L ELHR WELLL K+ EKG+KL Q
Sbjct: 126 LMELHRQWELLLEKMREKGIKLLQ 149
Score = 107 bits (268), Expect = 3e-27
Identities = 63/152 (41%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 784 ALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDE 843
++D K++E A+D+ +RR +L R E S RR LEDSY+FQ F+RD +E
Sbjct: 2 SMDPSGVKVLE----TAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEE 57
Query: 844 TKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHY 903
+ W+ EKL+ A+D+NY DPTNL GK+QKHQ FE E+ AN + ++ TG ++ H+
Sbjct: 58 LEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHF 117
Query: 904 ASDKIRQRMEQIVHLWESLATATEKKGNKLQE 935
AS+ IR R+ ++ WE L +KG KL +
Sbjct: 118 ASETIRTRLMELHRQWELLLEKMREKGIKLLQ 149
Score = 81.8 bits (202), Expect = 2e-18
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 438 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNED 497
A+DI+E+ + + + L RR E Q F RD E+ + W+ ++ S+E+
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDEN 73
Query: 498 LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKR 557
D +++ ++KH+ FE + A I LDE +I H+A++ + R L ++
Sbjct: 74 YKD-PTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQ 132
Query: 558 RAGLLEKSARRRAILE 573
LLEK + L
Sbjct: 133 WELLLEKMREKGIKLL 148
Score = 80.3 bits (198), Expect = 8e-18
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 120 SEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADE 179
+E I++R +++ + + KL+ + F R +E+ WI +K + DE
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIAS-DE 72
Query: 180 FGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEA 239
D +++ +K F+ ++ + + ++++ + ++ EGH ETI R EL
Sbjct: 73 NYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQ 132
Query: 240 WMRLKQLALMRQEKLF 255
W L + + KL
Sbjct: 133 WELLLEKMREKGIKLL 148
Score = 77.2 bits (190), Expect = 1e-16
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 333 DQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADEL 392
+ IQ +R ++++ + R + R+QKL++SY F D +L W+ + K I++DE
Sbjct: 15 EDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQE-KLQIASDEN 73
Query: 393 AKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDK 452
KD + L++HQ + E+ A + + G ++ H+A++ IR +L L
Sbjct: 74 YKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQW 133
Query: 453 THLLTLWEERRILYEQ 468
LL E+ I Q
Sbjct: 134 ELLLEKMREKGIKLLQ 149
Score = 76.5 bits (188), Expect = 2e-16
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 227 ETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY 286
E I R++++ + + R K+L+ +R++KL ++ Q F RDA+E WI EK + S + Y
Sbjct: 15 EDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDENY 74
Query: 287 GRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYW 346
D ++Q +KH+ E ++ A + L + + + I+ + E+ W
Sbjct: 75 K-DPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQW 133
Query: 347 ERLTGKAKGRKQKLDE 362
E L K + + KL +
Sbjct: 134 ELLLEKMREKGIKLLQ 149
Score = 74.1 bits (182), Expect = 1e-15
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 1/126 (0%)
Query: 905 SDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSED 964
++ I++R +Q++ + + + KL+++ + Q F R E++E W+ E E+
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDEN 73
Query: 965 YGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCER 1024
Y D T++Q +KH EA+V ++ I + + GHF ++ I+ + + +
Sbjct: 74 YK-DPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQ 132
Query: 1025 YENLQR 1030
+E L
Sbjct: 133 WELLLE 138
Score = 73.4 bits (180), Expect = 3e-15
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 579 QQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDV 638
++ +++++ + R + R+QKL++SY F D +L W+ + K I++DE KD
Sbjct: 19 ERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQE-KLQIASDENYKDP 77
Query: 639 AGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLL 698
+ L++HQ + E+ A + + G ++ H+A++ IR +L L LL
Sbjct: 78 TNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETIRTRLMELHRQWELLL 137
Query: 699 TLWEERRILYEQ 710
E+ I Q
Sbjct: 138 EKMREKGIKLLQ 149
Score = 72.6 bits (178), Expect = 4e-15
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 680 ADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNED 739
A+DI+E+ + + + L RR E Q F RD E+ + W+ ++ S+E+
Sbjct: 14 AEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYRFQFFQRDAEELEKWIQEKLQIASDEN 73
Query: 740 LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYA 799
D +++ ++KH+ FE + A I LDE +I H+A
Sbjct: 74 YKD-PTNLQGKLQKHQAFEAEVQANSG--------------AIVKLDETGNLMISEGHFA 118
Query: 800 ADDVAQRRDLLLKRRAGLLEKSARRRAILE 829
++ + R L ++ LLEK + L
Sbjct: 119 SETIRTRLMELHRQWELLLEKMREKGIKLL 148
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 127 bits (320), Expect = 4e-31
Identities = 70/479 (14%), Positives = 183/479 (38%), Gaps = 30/479 (6%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDE 531
++ + R + W+ + +L N ++ +++ ++ D+ + + + K E
Sbjct: 13 MEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLE 72
Query: 532 FATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERL 591
++ + L+ + + + + + +Q+ E+ + +E
Sbjct: 73 INFNTLQTK--------------LRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEW 118
Query: 592 TGKAKGRKQKLDESYYLHRFLADYRDLISWVSDM-KAIISADELAKDVAGAEALLERHQE 650
R ++L+ +F +W + ++ D + + ALL +H+
Sbjct: 119 LLNEIRRLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEA 176
Query: 651 HKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQ 710
+ ++ A +D A Q L + +++ A ++ ++ + + + L TL ++RR E+
Sbjct: 177 FESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALER 236
Query: 711 CMDLQ--------LFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLA 762
L F + + WM L + + S++ +++LI HE F+ +L
Sbjct: 237 MEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLP 296
Query: 763 AQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKR---RAGLLE 819
+ + +++ + I++ + + D++ + D + + R L+
Sbjct: 297 EADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQ 356
Query: 820 KSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQE 879
+ R+ E +QF + W+ K++ + L ++ + + +E
Sbjct: 357 EELARQHANERLR--RQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHN 414
Query: 880 LNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQ 938
+ K +D++ Q + EA + + ME I WE L T + N+++
Sbjct: 415 IINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVETQIL 473
Score = 119 bits (299), Expect = 2e-28
Identities = 69/456 (15%), Positives = 153/456 (33%), Gaps = 39/456 (8%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYR-----VTE 210
++ R E++ WI ++ ++ ++ F ++++ + +
Sbjct: 15 EYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLEIN 74
Query: 211 VNQLADKLVLEGHPERETIV-RRKEELSEAWMRLKQLALMRQEKLFGA--------HEIQ 261
N L KL + P + +++ AW RL+Q +E L H +
Sbjct: 75 FNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAE 134
Query: 262 RFNRDADETVAWIAEKDAVLSSDEY-GRDLASVQTLQRKHEGVERDLAALEDKVSTLGAE 320
+F + A W K+ +L +Y L V+ L RKHE E DLAA +D+V + A
Sbjct: 135 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAI 194
Query: 321 ADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHR--------FLAD 372
A L + + + +I + W+RL + R++ L+ L F
Sbjct: 195 AQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKR 254
Query: 373 YRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLL- 431
+W+ + + + ++L+ H++ K + + + +
Sbjct: 255 AAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEK 314
Query: 432 ------DRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCM--------DLQLFYR 477
R + + L + L R ++ + + F
Sbjct: 315 VIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAA 374
Query: 478 DTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLI 537
W+ + ++ + ++E + + + +E ++ + I L+ +
Sbjct: 375 QANAIGPWIQNKMEEIARSSIQI-TGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQ 433
Query: 538 EGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILE 573
E + + + LL AR +E
Sbjct: 434 EALVFDNKHTNYTMEHIRVGWELLLTTIARTINEVE 469
Score = 108 bits (270), Expect = 8e-25
Identities = 69/486 (14%), Positives = 164/486 (33%), Gaps = 59/486 (12%)
Query: 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGV--------ERDLAALE 311
++ + R A E + WI L + + + ++Q ++ LE
Sbjct: 13 MEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLE 72
Query: 312 DKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYY------ 365
+TL + ++I W+RL KG ++ L
Sbjct: 73 INFNTLQTKLRISN--RPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLE 130
Query: 366 --LHRFLADYRDLISWVSDM-KAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRG 422
+F +W + ++ D + + ALL +H+ + ++ A +D
Sbjct: 131 HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 190
Query: 423 TADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQ--------L 474
A Q L + +++ A ++ ++ + + + L TL ++RR E+ L
Sbjct: 191 IAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 250
Query: 475 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFAT 534
F + + WM L + + S++ +++LI HE F+ +L + + +++
Sbjct: 251 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQN 310
Query: 535 KLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGK 594
++ + + +S R + Y +E+ W+++
Sbjct: 311 EVEK-----------------------VIQSYNIRISSSNPYSTVTMDELRTKWDKVKQL 347
Query: 595 AKGRKQKLDESY--------YLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLE 646
R Q L E +F A + W+ + I+ + + E +
Sbjct: 348 VPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIARSSI-QITGALEDQMN 406
Query: 647 RHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRI 706
+ ++++ I +++ Q + + + + ++ LLT
Sbjct: 407 QLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIARTIN 466
Query: 707 LYEQCM 712
E +
Sbjct: 467 EVETQI 472
Score = 108 bits (269), Expect = 1e-24
Identities = 58/386 (15%), Positives = 139/386 (36%), Gaps = 28/386 (7%)
Query: 3 QITVKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESW 62
E K++ +R EQ Y ++ + E+LE + F++ A E+W
Sbjct: 89 AFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLA--EKFRQKASTHETW 146
Query: 63 IYEKLQAASDESY--KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFAS 120
Y K Q + Y T ++A ++KH+AFE+++AAH + + + +E+ ++ +
Sbjct: 147 AYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDA 206
Query: 121 EVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQ--------FIRQCDEVMFWINDKE 172
+ R +++ W+ L + ++ L++ L++ F ++ W+
Sbjct: 207 VNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAM 266
Query: 173 AFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLV-------LEGHPE 225
+ +E ++ L ++F+ + + + + +++ +
Sbjct: 267 EDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSS 326
Query: 226 RETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQR--------FNRDADETVAWIAEK 277
+EL W ++KQL +R + L Q F A+ WI K
Sbjct: 327 NPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNK 386
Query: 278 DAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQA 337
++ +++ + + E ++ ++ + L + +
Sbjct: 387 MEEIARSSIQ-ITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNY 445
Query: 338 KRAEIVEYWERLTGKAKGRKQKLDES 363
I WE L +++
Sbjct: 446 TMEHIRVGWELLLTTIARTINEVETQ 471
Score = 94.6 bits (234), Expect = 2e-20
Identities = 67/461 (14%), Positives = 152/461 (32%), Gaps = 54/461 (11%)
Query: 608 LHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQ----EHKGEIDAREDSFR 663
+ + +L+ W+ + K + + LE + +HK +
Sbjct: 13 MEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLE 72
Query: 664 GTADAGQSLLDRNHYAADDIREKLRN--LENDKTHLLTLWEERRILYEQCMD-------- 713
+ Q+ L ++ A E + L + +
Sbjct: 73 INFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHL 132
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNED-LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 772
+ F + +TW +E L +D SL V AL++KHE FE LAA +++++ +
Sbjct: 133 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 192
Query: 773 DLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY 832
+ A +L E ++ A +V R + + L + +RR LE
Sbjct: 193 AI--------------AQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERME 238
Query: 833 KFQQ--------FERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNAN 883
K + F + +W+ ++ D + + + H+ F+ L
Sbjct: 239 KLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEA 298
Query: 884 KTRMDEITSTGQELLE-------ANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEA 936
I + E+ + ++ M+++ W+ + + LQE
Sbjct: 299 DGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEE 358
Query: 937 SQQQG--------FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVAS 988
+Q F I W+ + ++ + ++++ + E ++ +
Sbjct: 359 LARQHANERLRRQFAAQANAIGPWIQNKM-EEIARSSIQITGALEDQMNQLKQYEHNIIN 417
Query: 989 HLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029
+ + I+ ++ + E FD + + +E L
Sbjct: 418 YKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLL 458
Score = 92.6 bits (229), Expect = 1e-19
Identities = 54/329 (16%), Positives = 124/329 (37%), Gaps = 14/329 (4%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKA-LD 772
++ + R + W+ + +L N ++ +++ ++ D+ + + + K L+
Sbjct: 13 MEEYERLASELLEWIRRTIPWLENRTPEKTMQAMQKKLEDFRDYRRKHKPPKVQEKCQLE 72
Query: 773 DLLKVNTMQIKALDEFATKLIEGQHYAA-DDVAQRRDLLLKRRAGLLEKSARRRAILEDS 831
+++ + A EG+ + QR + K L RR LE
Sbjct: 73 INFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHL 132
Query: 832 YKFQQFERDCDETKSWVTEKLKFANDDNYL--DPTNLNGKVQKHQNFEQELNANKTRMDE 889
++F + ++W K + +Y T + ++KH+ FE +L A++ R+++
Sbjct: 133 A--EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 190
Query: 890 ITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQ--------G 941
I + QEL E +++ + + R ++I W+ L T T+K+ L+ +
Sbjct: 191 IAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 250
Query: 942 FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATE 1001
F + W+ L + +Q+L H +A + +S+ A
Sbjct: 251 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQN 310
Query: 1002 QFLERGHFDADNIKAKQAAMCERYENLQR 1030
+ + I + + L+
Sbjct: 311 EVEKVIQSYNIRISSSNPYSTVTMDELRT 339
Score = 58.4 bits (140), Expect = 7e-09
Identities = 23/144 (15%), Positives = 63/144 (43%), Gaps = 1/144 (0%)
Query: 11 ILETANDIQERREQVLNRYADFKSEARSKREKLEDSRR-FQYFKRDADELESWIYEKLQA 69
T ++++ + ++V + + + + R + F A+ + WI K++
Sbjct: 330 STVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEE 389
Query: 70 ASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEE 129
+ S + T L+ ++ + + +E + + N I L+ + + F ++ +E
Sbjct: 390 IARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEH 449
Query: 130 LHRLWELLLSKLAEKGMKLQQALV 153
+ WELLL+ +A +++ ++
Sbjct: 450 IRVGWELLLTTIARTINEVETQIL 473
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP:
a.7.1.1
Length = 107
Score = 111 bits (278), Expect = 5e-29
Identities = 48/107 (44%), Positives = 72/107 (67%)
Query: 468 QCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIK 527
Q +DLQL+ RD E A++WM+ +EAFL+ +D ++ +VEALIKKHEDF+K++ E+KI
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 528 ALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILED 574
AL A +LI HYA++ V ++R +L+R L E +R+ L D
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 101 bits (253), Expect = 1e-25
Identities = 48/121 (39%), Positives = 72/121 (59%), Gaps = 14/121 (11%)
Query: 710 QCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIK 769
Q +DLQL+ RD E A++WM+ +EAFL+ +D ++ +VEALIKKHEDF+K++ E+K
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQK-- 58
Query: 770 ALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILE 829
I AL A +LI HYA++ V ++R +L+R L E +R+ L
Sbjct: 59 ------------IAALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG 106
Query: 830 D 830
D
Sbjct: 107 D 107
Score = 84.5 bits (209), Expect = 1e-19
Identities = 24/106 (22%), Positives = 55/106 (51%)
Query: 257 AHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVST 316
++Q + RD + +W++ ++A L++D+ +V+ L +KHE ++ + E K++
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 317 LGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDE 362
L AD+L + + + KR +++E W L ++ +L +
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 84.1 bits (208), Expect = 1e-19
Identities = 27/105 (25%), Positives = 58/105 (55%)
Query: 150 QALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVT 209
Q L L ++R C+ W++ +EAF+ AD+ +VE L +K ++F K + E ++
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 210 EVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKL 254
+ +AD+L+ + H + +++++ E W LK+ + ++ +L
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRL 105
Score = 74.9 bits (184), Expect = 2e-16
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 935 EASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIE 994
+ Q + R E E W+S E L ++D +V+ L KKH + + H +I
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 995 SVKAATEQFLERGHFDADNIKAKQAAMCERYENLQ 1029
+++ +Q + + H+ ++ + K+ + ER+ +L+
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLK 95
Score = 72.9 bits (179), Expect = 9e-16
Identities = 25/106 (23%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 831 SYKFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNANKTRMDE 889
+ Q + RDC+ +SW++ + F N D+ N+ ++KH++F++ +N ++ ++
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 890 ITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQE 935
+ + +L+ NHYAS+ + ++ +Q++ W L +K ++L +
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
Score = 70.6 bits (173), Expect = 6e-15
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 46 SRRFQYFKRDADELESWIYEK-LQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVV 104
+ Q + RD + ESW+ + +D+ N++A I+KH+ F+ + H I
Sbjct: 2 NLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAA 61
Query: 105 LDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQ 149
L ++I QNH+AS ++ ++ +++ W L L EK +L
Sbjct: 62 LQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG 106
Score = 66.8 bits (163), Expect = 1e-13
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 362 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR 421
++ L ++ D SW+S +A ++AD+ A EAL+++H++ I+ E
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 422 GTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 463
L+ +NHYA++ + EK + + HL E+R
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKR 102
Score = 66.8 bits (163), Expect = 1e-13
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 604 ESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFR 663
++ L ++ D SW+S +A ++AD+ A EAL+++H++ I+ E
Sbjct: 1 QNLDLQLYMRDCELAESWMSAREAFLNADDDANAGGNVEALIKKHEDFDKAINGHEQKIA 60
Query: 664 GTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 705
L+ +NHYA++ + EK + + HL E+R
Sbjct: 61 ALQTVADQLIAQNHYASNLVDEKRKQVLERWRHLKEGLIEKR 102
Score = 27.5 bits (61), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLED 45
+N + E+R+QVL R+ K KR +L D
Sbjct: 77 SNLVDEKRKQVLERWRHLKEGLIEKRSRLGD 107
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 111 bits (278), Expect = 1e-27
Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 9/232 (3%)
Query: 131 HRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVL 190
L K + L + ++ +++ W+++ + + E+G+DL VE
Sbjct: 2 LMQIRKPLLKSSLLDQNLTEEE---VNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESH 58
Query: 191 QRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMR 250
+ + E + E ++ P + + + L + +L + +
Sbjct: 59 LENHKNVHRAIEEFESSLKEAKISEIQM---TAPLKLSYTDKLHRLESQYAKLLNTSRNQ 115
Query: 251 QEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAAL 310
+ L + F A + W+ EK+ + ++ +SV + H + R+L
Sbjct: 116 ERHL---DTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQK 172
Query: 311 EDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDE 362
E+ + + A++L + I+A RA + W + + +Q + E
Sbjct: 173 EESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 110 bits (276), Expect = 2e-27
Identities = 38/224 (16%), Positives = 87/224 (38%), Gaps = 6/224 (2%)
Query: 240 WMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRK 299
M++++ L E + + + + W+ E L E+G DL SV++
Sbjct: 2 LMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLEN 61
Query: 300 HEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQK 359
H+ V R + E + ++ + K + + +L ++ +++
Sbjct: 62 HKNVHRAIEEFESSLKEAKISEIQM---TAPLKLSYTDKLHRLESQYAKLLNTSRNQERH 118
Query: 360 LDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDS 419
LD LH F+ + + W+++ + A + ++ + H E E++ +E+S
Sbjct: 119 LDT---LHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEES 175
Query: 420 FRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 463
+ + + LL NH A I ++ + +L L +
Sbjct: 176 IKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVE 219
Score = 106 bits (266), Expect = 4e-26
Identities = 33/228 (14%), Positives = 85/228 (37%), Gaps = 7/228 (3%)
Query: 28 RYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASDESYKET-TNLQAKIQ 86
+ + ++ + + +L +W+ E + ++++ ++
Sbjct: 1 KLMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLE 60
Query: 87 KHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGM 146
H+ + +++ + +M + +L L + LL+ +
Sbjct: 61 NHKNVHRAIEEFESSLKEAKISEIQMTAPLKLS---YTDKLHRLESQYAKLLNTSRNQER 117
Query: 147 KLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEY 206
L L F+ + + W+N+KE A ++ V + E +++ +E
Sbjct: 118 HLDT---LHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEE 174
Query: 207 RVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKL 254
+ V ++A++L+LE HP R TI + + W + QL ++ +
Sbjct: 175 SIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHI 222
Score = 104 bits (260), Expect = 3e-25
Identities = 46/229 (20%), Positives = 85/229 (37%), Gaps = 9/229 (3%)
Query: 346 WERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER 405
+ K+ Q L E +F+ +DL++WV +M+ + E D+ E+ LE
Sbjct: 5 IRKPLLKSSLLDQNLTEEEVNMKFV---QDLLNWVDEMQVQLDRTEWGSDLPSVESHLEN 61
Query: 406 HQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRIL 465
H+ I+ E S + + + +KL LE+ LL +
Sbjct: 62 HKNVHRAIEEFESSLKEAKISEIQMTAPLK---LSYTDKLHRLESQYAKLLNTSRNQE-- 116
Query: 466 YEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEK 525
L F W+ ++E D + SV H + + L +EE
Sbjct: 117 -RHLDTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEES 175
Query: 526 IKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILED 574
IKA+ E A +L+ H A + R + + + +L+ +++
Sbjct: 176 IKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHIQE 224
Score = 101 bits (254), Expect = 2e-24
Identities = 36/242 (14%), Positives = 78/242 (32%), Gaps = 21/242 (8%)
Query: 695 THLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKH 754
+ + +L + + ++ + + W+ + + L + G L SVE+ ++ H
Sbjct: 3 MQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENH 62
Query: 755 EDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRR 814
++ +++ E +K I+ + L +
Sbjct: 63 KNVHRAIEEFESSLKEAK-----------------ISEIQMTAPLKLSYTDKLHRLESQY 105
Query: 815 AGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLK-FANDDNYLDPTNLNGKVQKH 873
A LL S + L+ F W+ EK + D +++ K H
Sbjct: 106 AKLLNTSRNQERHLDT---LHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYH 162
Query: 874 QNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKL 933
+EL + + + ++LL NH A I + W + + +
Sbjct: 163 AELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQHI 222
Query: 934 QE 935
QE
Sbjct: 223 QE 224
Score = 95.4 bits (237), Expect = 3e-22
Identities = 45/243 (18%), Positives = 86/243 (35%), Gaps = 23/243 (9%)
Query: 588 WERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLER 647
+ K+ Q L E +F+ +DL++WV +M+ + E D+ E+ LE
Sbjct: 5 IRKPLLKSSLLDQNLTEEEVNMKFV---QDLLNWVDEMQVQLDRTEWGSDLPSVESHLEN 61
Query: 648 HQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRIL 707
H+ I+ E S + + + +KL LE+ LL +
Sbjct: 62 HKNVHRAIEEFESSLKEAKISEIQMTAPLK---LSYTDKLHRLESQYAKLLNTSRNQE-- 116
Query: 708 YEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEK 767
L F W+ ++E D + SV H + + L +EE
Sbjct: 117 -RHLDTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEES 175
Query: 768 IKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAI 827
IKA+ ++ A +L+ H A + R + + + +L+
Sbjct: 176 IKAVQEI--------------AEQLLLENHPARLTIEAYRAAMQTQWSWILQLCQCVEQH 221
Query: 828 LED 830
+++
Sbjct: 222 IQE 224
Score = 95.4 bits (237), Expect = 3e-22
Identities = 31/209 (14%), Positives = 82/209 (39%), Gaps = 7/209 (3%)
Query: 822 ARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQEL 880
+ + ++ + + + + +WV E + + D ++ ++ H+N + +
Sbjct: 10 LKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAI 69
Query: 881 NANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQ 940
++ + E + ++ ++ ++ + L + + L
Sbjct: 70 EEFESSLKEAKISEIQMTAPLK---LSYTDKLHRLESQYAKLLNTSRNQERHLDTL---H 123
Query: 941 GFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAAT 1000
F + +WL+E E ++ D+ + +SV + HA L ++ + I++V+
Sbjct: 124 NFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIA 183
Query: 1001 EQFLERGHFDADNIKAKQAAMCERYENLQ 1029
EQ L H I+A +AAM ++ +
Sbjct: 184 EQLLLENHPARLTIEAYRAAMQTQWSWIL 212
Score = 94.3 bits (234), Expect = 9e-22
Identities = 33/253 (13%), Positives = 90/253 (35%), Gaps = 36/253 (14%)
Query: 453 THLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKH 512
+ + +L + + ++ + + W+ + + L + G L SVE+ ++ H
Sbjct: 3 MQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENH 62
Query: 513 EDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAIL 572
++ +++ E +K ++ + D
Sbjct: 63 KNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTD-------------------------- 96
Query: 573 EDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISAD 632
+ + + +L ++ +++ LD LH F+ + + W+++ + A
Sbjct: 97 -------KLHRLESQYAKLLNTSRNQERHLDT---LHNFVTRATNELIWLNEKEESEVAY 146
Query: 633 ELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLEN 692
+ ++ + H E E++ +E+S + + + LL NH A I ++
Sbjct: 147 DWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQT 206
Query: 693 DKTHLLTLWEERR 705
+ +L L +
Sbjct: 207 QWSWILQLCQCVE 219
Score = 70.0 bits (171), Expect = 2e-13
Identities = 20/139 (14%), Positives = 51/139 (36%), Gaps = 4/139 (2%)
Query: 13 ETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASD 72
++ ++ ++YA + +R++ L+ F A W+ EK ++
Sbjct: 89 PLKLSYTDKLHRLESQYAKLLNTSRNQERHLDT---LHNFVTRATNELIWLNEKEESEVA 145
Query: 73 ESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELH 131
+ + +++ K H E+ +I + ++++ +NH A I +
Sbjct: 146 YDWSERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLENHPARLTIEAYRAAMQ 205
Query: 132 RLWELLLSKLAEKGMKLQQ 150
W +L +Q+
Sbjct: 206 TQWSWILQLCQCVEQHIQE 224
Score = 64.6 bits (157), Expect = 1e-11
Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 919 WESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKK 978
+ K Q ++++ + ++D+ W+ E++ QL ++G DL SV++ +
Sbjct: 2 LMQIRKPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLEN 61
Query: 979 HALLEADVASHLDRIESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQRP 1031
H + + ++ K + Q + K + +Y L
Sbjct: 62 HKNVHRAIEEFESSLKEAKISEIQM---TAPLKLSYTDKLHRLESQYAKLLNT 111
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 110 bits (276), Expect = 2e-27
Identities = 34/212 (16%), Positives = 76/212 (35%), Gaps = 7/212 (3%)
Query: 44 EDSRRFQYFKRDADELESWIYEKLQAASDESYKET-TNLQAKIQKHQAFEAEVAAHSNAI 102
R +L +W+ E + +++A++ H+ + I
Sbjct: 2 SHMELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKI 61
Query: 103 VVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCD 162
+ ++ A R L L + LL+ + L+ L F+
Sbjct: 62 ERARSDEGQLSPATRGA---YRDCLGRLDLQYAKLLNSSKARLRSLES---LHSFVAAAT 115
Query: 163 EVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEG 222
+ + W+N+KE ++ ++ + + +++ +E ++ E+ D+L+ E
Sbjct: 116 KELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLRED 175
Query: 223 HPERETIVRRKEELSEAWMRLKQLALMRQEKL 254
HP R T+ + L W + QL + L
Sbjct: 176 HPARPTVESFQAALQTQWSWMLQLCCCIEAHL 207
Score = 108 bits (272), Expect = 5e-27
Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 6/208 (2%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLA 215
+R +++ W+ + + V E+G DL VE + + ++
Sbjct: 9 STLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDE 68
Query: 216 DKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIA 275
+L L + +L + R L + F A + + W+
Sbjct: 69 GQLSPATRGA---YRDCLGRLDLQYAKLLNSSKARLRSL---ESLHSFVAAATKELMWLN 122
Query: 276 EKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCGIHSDHGDQI 335
EK+ ++ ++ + + + R+L E K+ L DRL +
Sbjct: 123 EKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTV 182
Query: 336 QAKRAEIVEYWERLTGKAKGRKQKLDES 363
++ +A + W + + L E+
Sbjct: 183 ESFQAALQTQWSWMLQLCCCIEAHLKEN 210
Score = 107 bits (268), Expect = 2e-26
Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 6/207 (2%)
Query: 369 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428
L +DL++WV + + + E D+ EA L H+ I+
Sbjct: 10 TLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEG 69
Query: 429 SLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAK 488
L A R+ L L+ LL + R L F + W+ +
Sbjct: 70 QLSPATRGA---YRDCLGRLDLQYAKLLNSSKARL---RSLESLHSFVAAATKELMWLNE 123
Query: 489 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVA 548
+E D D ++ A + + + L +E+KIK L +L+ H A V
Sbjct: 124 KEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVE 183
Query: 549 QRRDLLLKRRAGLLEKSARRRAILEDS 575
+ L + + +L+ A L+++
Sbjct: 184 SFQAALQTQWSWMLQLCCCIEAHLKEN 210
Score = 103 bits (258), Expect = 3e-25
Identities = 36/203 (17%), Positives = 75/203 (36%), Gaps = 6/203 (2%)
Query: 261 QRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAE 320
R + +AW+ E + E+G DL SV+ H G+ + + K+ ++
Sbjct: 8 DSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSD 67
Query: 321 ADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWV 380
+L + + + +L +K R + L+ LH F+A + W+
Sbjct: 68 EGQL---SPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLES---LHSFVAAATKELMWL 121
Query: 381 SDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADD 440
++ + + + A E + E++ +E + +AG LL +H A
Sbjct: 122 NEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPT 181
Query: 441 IREKLRNLENDKTHLLTLWEERR 463
+ L+ + +L L
Sbjct: 182 VESFQAALQTQWSWMLQLCCCIE 204
Score = 100 bits (250), Expect = 5e-24
Identities = 35/222 (15%), Positives = 68/222 (30%), Gaps = 21/222 (9%)
Query: 715 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
R + W+ + + + + G L SVEA + H +S+ KI+
Sbjct: 8 DSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSD 67
Query: 775 LKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKF 834
+ RD L + + +A L
Sbjct: 68 --------------------EGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESL 107
Query: 835 QQFERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
F + W+ EK + ++ TN+ K + + +EL + ++ E+ +
Sbjct: 108 HSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNA 167
Query: 894 GQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQE 935
G LL +H A + + W + L+E
Sbjct: 168 GDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKE 209
Score = 98.5 bits (245), Expect = 2e-23
Identities = 41/221 (18%), Positives = 75/221 (33%), Gaps = 20/221 (9%)
Query: 611 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 670
L +DL++WV + + + E D+ EA L H+ I+
Sbjct: 10 TLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEG 69
Query: 671 SLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAK 730
L A R+ L L+ LL + R L F + W+ +
Sbjct: 70 QLSPATRGA---YRDCLGRLDLQYAKLLNSSKARL---RSLESLHSFVAAATKELMWLNE 123
Query: 731 QEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFAT 790
+E D D ++ A + + + L +E+KIK L +
Sbjct: 124 KEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNA--------------GD 169
Query: 791 KLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDS 831
+L+ H A V + L + + +L+ A L+++
Sbjct: 170 RLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKEN 210
Score = 94.6 bits (235), Expect = 4e-22
Identities = 29/196 (14%), Positives = 80/196 (40%), Gaps = 7/196 (3%)
Query: 835 QQFERDCDETKSWVTEKLKFANDDNY-LDPTNLNGKVQKHQNFEQELNANKTRMDEITST 893
R + +WV E + + +D ++ ++ H+ Q + + +++ S
Sbjct: 8 DSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSD 67
Query: 894 GQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWL 953
+L A A R + ++ + L +++ + L+ F +WL
Sbjct: 68 EGQLSPATRGA---YRDCLGRLDLQYAKLLNSSKARLRSLE---SLHSFVAAATKELMWL 121
Query: 954 SEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADN 1013
+E E + + D+ T++ ++ ++ L ++ +I+ ++ A ++ L H
Sbjct: 122 NEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPT 181
Query: 1014 IKAKQAAMCERYENLQ 1029
+++ QAA+ ++ +
Sbjct: 182 VESFQAALQTQWSWML 197
Score = 93.9 bits (233), Expect = 8e-22
Identities = 37/233 (15%), Positives = 73/233 (31%), Gaps = 36/233 (15%)
Query: 473 QLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEF 532
R + W+ + + + + G L SVEA + H +S+ KI+
Sbjct: 8 DSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSD 67
Query: 533 ATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLT 592
+L A D + + +L
Sbjct: 68 EGQLSPATRGAYRD---------------------------------CLGRLDLQYAKLL 94
Query: 593 GKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHK 652
+K R + L+ LH F+A + W+++ + + + A E +
Sbjct: 95 NSSKARLRSLES---LHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALM 151
Query: 653 GEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 705
E++ +E + +AG LL +H A + L+ + +L L
Sbjct: 152 RELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQTQWSWMLQLCCCIE 204
Score = 71.9 bits (176), Expect = 3e-14
Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 4/139 (2%)
Query: 13 ETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQAASD 72
T ++ ++ +YA + ++++ LE F A + W+ EK +
Sbjct: 74 ATRGAYRDCLGRLDLQYAKLLNSSKARLRSLES---LHSFVAAATKELMWLNEKEEEEVG 130
Query: 73 ESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELH 131
+ TN+ AK + + A E+ I L N G ++ ++H A + L
Sbjct: 131 FDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHPARPTVESFQAALQ 190
Query: 132 RLWELLLSKLAEKGMKLQQ 150
W +L L++
Sbjct: 191 TQWSWMLQLCCCIEAHLKE 209
Score = 59.2 bits (143), Expect = 6e-10
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 934 QEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRI 993
+ R ++D+ W+ E + ++ ++G DL SV+ H L + +I
Sbjct: 2 SHMELEDSTLRYLQDLLAWVEENQHRVDGAEWGVDLPSVEAQLGSHRGLHQSIEEFRAKI 61
Query: 994 ESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQRP 1031
E ++ Q + + +Y L
Sbjct: 62 ERARSDEGQLSPATRGA---YRDCLGRLDLQYAKLLNS 96
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 101 bits (252), Expect = 5e-24
Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 16/230 (6%)
Query: 156 QFIRQCDEVMFWINDKEAFVTA-DEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQL 214
+F ++ W KE + D A L V L RK + F+ D+A+ + RV ++ +
Sbjct: 18 KFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAI 77
Query: 215 ADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQR--------FNRD 266
A +L + + + R +++ + W RL L R+E L ++ F +
Sbjct: 78 AQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKR 137
Query: 267 ADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRLCG 326
A W+ L + +Q+L HE + L + + ++ A + +
Sbjct: 138 AAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEK 197
Query: 327 IHSDHGDQ-------IQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRF 369
+ + + E+ W+++ R Q L E
Sbjct: 198 VIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
Score = 100 bits (251), Expect = 7e-24
Identities = 42/243 (17%), Positives = 100/243 (41%), Gaps = 19/243 (7%)
Query: 39 KREKLEDSRRFQYFKRDADELESWIYEKLQAASDESY--KETTNLQAKIQKHQAFEAEVA 96
+ E+LE + F++ A E+W Y K Q + Y T ++A ++KH+AFE+++A
Sbjct: 8 RLERLE--HLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 97 AHSNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQ 156
AH + + + +E+ ++ + + R +++ W+ L + ++ L++ L++
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 125
Query: 157 --------FIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRV 208
F ++ W+ + +E ++ L ++F+ + +
Sbjct: 126 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGER 185
Query: 209 TEVNQLADKLV-------LEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQ 261
+ + +++ + +EL W ++KQL +R + L Q
Sbjct: 186 QSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQ 245
Query: 262 RFN 264
N
Sbjct: 246 HAN 248
Score = 99.0 bits (246), Expect = 4e-23
Identities = 39/249 (15%), Positives = 94/249 (37%), Gaps = 18/249 (7%)
Query: 598 RKQKLDESYYLHRFLADYRDLISWVSDMKAIISA-DELAKDVAGAEALLERHQEHKGEID 656
R ++L+ +F +W + I+ D + + ALL +H+ + ++
Sbjct: 8 RLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 657 AREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQ- 715
A +D A Q L + +++ A ++ ++ + + + L TL ++RR E+ L
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 125
Query: 716 -------LFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKI 768
F + + WM L + + S++ +++LI HE F+ +L + +
Sbjct: 126 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGER 185
Query: 769 KALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAIL 828
+++ + +++ + D L + + + R L
Sbjct: 186 QSIMAIQ-------NEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSL 238
Query: 829 EDSYKFQQF 837
++ Q
Sbjct: 239 QEELARQHA 247
Score = 98.2 bits (244), Expect = 6e-23
Identities = 40/244 (16%), Positives = 94/244 (38%), Gaps = 18/244 (7%)
Query: 356 RKQKLDESYYLHRFLADYRDLISWVSDMKAIISA-DELAKDVAGAEALLERHQEHKGEID 414
R ++L+ +F +W + I+ D + + ALL +H+ + ++
Sbjct: 8 RLERLEHL--AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLA 65
Query: 415 AREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQ- 473
A +D A Q L + +++ A ++ ++ + + + L TL ++RR E+ L
Sbjct: 66 AHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLE 125
Query: 474 -------LFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKI 526
F + + WM L + + S++ +++LI HE F+ +L + +
Sbjct: 126 TIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGER 185
Query: 527 KALDEFATKLIE-------GQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQ 579
+++ ++ + + D L + + + R L++ Q
Sbjct: 186 QSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQ 245
Query: 580 QFEE 583
E
Sbjct: 246 HANE 249
Score = 97.8 bits (243), Expect = 9e-23
Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 18/245 (7%)
Query: 248 LMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEY-GRDLASVQTLQRKHEGVERD 306
+ R E+L H ++F + A W K+ +L +Y L V+ L RKHE E D
Sbjct: 6 IRRLERL--EHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESD 63
Query: 307 LAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYL 366
LAA +D+V + A A L + + + +I + W+RL + R++ L+ L
Sbjct: 64 LAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKL 123
Query: 367 HR--------FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 418
F +W+ + + + ++L+ H++ K + +
Sbjct: 124 LETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADG 183
Query: 419 SFRGTADAGQSLLD-------RNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMD 471
+ + R + + L + L R ++ +
Sbjct: 184 ERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELA 243
Query: 472 LQLFY 476
Q
Sbjct: 244 RQHAN 248
Score = 96.7 bits (240), Expect = 3e-22
Identities = 40/218 (18%), Positives = 84/218 (38%), Gaps = 12/218 (5%)
Query: 823 RRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYL--DPTNLNGKVQKHQNFEQEL 880
RR LE ++F + ++W K + +Y T + ++KH+ FE +L
Sbjct: 7 RRLERLEHLA--EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDL 64
Query: 881 NANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQ 940
A++ R+++I + QEL E +++ + + R ++I W+ L T T+K+ L+ +
Sbjct: 65 AAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLL 124
Query: 941 G--------FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDR 992
F + W+ L + +Q+L H +A +
Sbjct: 125 ETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGE 184
Query: 993 IESVKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030
+S+ A + + I + + L+
Sbjct: 185 RQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRT 222
Score = 93.2 bits (231), Expect = 4e-21
Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 30/255 (11%)
Query: 472 LQLFYRDTEQADTWMAKQEAFLSNED-LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 530
+ F + +TW +E L +D SL V AL++KHE FE LAA +++++ +
Sbjct: 16 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 75
Query: 531 EFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWER 590
A +L E ++ A +V R + + L + +RR LE K + + +
Sbjct: 76 AIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQL----- 130
Query: 591 LTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQE 650
F +W+ + + + ++L+ H++
Sbjct: 131 -----------------HLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQ 173
Query: 651 HKGEIDAREDSFRGTADAGQSLLD-------RNHYAADDIREKLRNLENDKTHLLTLWEE 703
K + + + + R + + L + L
Sbjct: 174 FKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPI 233
Query: 704 RRILYEQCMDLQLFY 718
R ++ + Q
Sbjct: 234 RDQSLQEELARQHAN 248
Score = 86.3 bits (213), Expect = 7e-19
Identities = 46/247 (18%), Positives = 91/247 (36%), Gaps = 31/247 (12%)
Query: 714 LQLFYRDTEQADTWMAKQEAFLSNED-LGDSLDSVEALIKKHEDFEKSLAAQEEKIKALD 772
+ F + +TW +E L +D SL V AL++KHE FE LAA +++++ +
Sbjct: 16 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQIA 75
Query: 773 DLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSY 832
+ A +L E ++ A +V R + + L + +RR LE
Sbjct: 76 AI--------------AQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERME 121
Query: 833 KFQQ--------FERDCDETKSWVTEKLKFANDDNYL-DPTNLNGKVQKHQNFEQELNAN 883
K + F + +W+ ++ D + + + H+ F+ L
Sbjct: 122 KLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEA 181
Query: 884 KTRMDEITSTGQELLE-------ANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEA 936
I + E+ + ++ M+++ W+ + + LQE
Sbjct: 182 DGERQSIMAIQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEE 241
Query: 937 SQQQGFN 943
+Q N
Sbjct: 242 LARQHAN 248
Score = 54.3 bits (130), Expect = 4e-08
Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 16/159 (10%)
Query: 15 ANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQ--------YFKRDADELESWIYEK 66
A ++ +R +++ +++ + + +RE LE + F + A +W+
Sbjct: 89 AVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGA 148
Query: 67 LQAASDESY-KETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHF------- 118
++ D +Q+ I H+ F+A + + E+
Sbjct: 149 MEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISS 208
Query: 119 ASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQF 157
++ ++EL W+ + + + LQ+ L
Sbjct: 209 SNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHA 247
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 80.5 bits (198), Expect = 5e-17
Identities = 27/223 (12%), Positives = 73/223 (32%), Gaps = 17/223 (7%)
Query: 44 EDSRRFQYFKRDADELESWIYEKLQAASDESYKET-TNLQAKIQKHQAFEAE----VAAH 98
E R+Q ++ L W+ A + + + ++ + F+ A
Sbjct: 8 ELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEAD 67
Query: 99 SNAIVVLDNTGKEMINQNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQ-- 156
N + + + + ++ + W L + E+ +L+ ++
Sbjct: 68 KNRSKGIYQSLEGAVQAGQLKVP-PGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEAL 126
Query: 157 ------FIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTE 210
+ +N +A + +D L + ++ E ++D+ + +
Sbjct: 127 QRIVTKLQMEAGLAEEQLNQADALLQSD---VRLLAAGKVPQRAGEVERDLDKADSMIRL 183
Query: 211 VNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEK 253
+ L HP+ E + RR L + + ++ +R +
Sbjct: 184 LFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKA 226
Score = 70.5 bits (172), Expect = 2e-13
Identities = 32/207 (15%), Positives = 64/207 (30%), Gaps = 14/207 (6%)
Query: 374 RDLISWVSDMKAIISADELAKDVAGAEALLERHQEH-----------KGEIDAREDSFRG 422
L+ W+ A E L + + K S G
Sbjct: 21 LLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEG 80
Query: 423 TADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQA 482
AGQ + ++ D +E + L E L + + A
Sbjct: 81 AVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLA 140
Query: 483 DTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHY 542
+ + + +A L ++ L + + ++ + E+ L + I+ L L +G+H
Sbjct: 141 EEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDGRHP 197
Query: 543 AADDVAQRRDLLLKRRAGLLEKSARRR 569
+ + +R L KR + + R
Sbjct: 198 QGEQMYRRVYRLHKRLVAIRTEYNLRL 224
Score = 65.5 bits (159), Expect = 6e-12
Identities = 31/215 (14%), Positives = 77/215 (35%), Gaps = 14/215 (6%)
Query: 156 QFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQ---KDMASQEYRVTEVN 212
++ ++ W+ A F + E +E+L +F +F+ + ++
Sbjct: 15 EYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGI 74
Query: 213 QLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQ--------RFN 264
+ + ++ + ++ + W +L L R+++L E +
Sbjct: 75 YQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQ 134
Query: 265 RDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVERDLAALEDKVSTLGAEADRL 324
+A + + DA+L SD L + + ++ VERDL + + L + L
Sbjct: 135 MEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTL 191
Query: 325 CGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQK 359
G+Q+ + + + + + R +
Sbjct: 192 KDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKA 226
Score = 57.4 bits (138), Expect = 4e-09
Identities = 23/215 (10%), Positives = 66/215 (30%), Gaps = 17/215 (7%)
Query: 829 EDSYKFQQFERDCDETKSWVTEKLKFANDDNYLD-PTNLNGKVQKHQNFEQEL----NAN 883
E ++Q++ W+ + + + + F++ A+
Sbjct: 8 ELQLRWQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEAD 67
Query: 884 KTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQG-- 941
K R I + + ++A + W L A ++ +L+ ++
Sbjct: 68 KNRSKGIYQSLEGAVQAGQLKVPPGY-HPLDVEKEWGKLHVAILEREKQLRSEFERLEAL 126
Query: 942 ------FNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIES 995
E L++ + L S+ L + + ++ +E D+ I
Sbjct: 127 QRIVTKLQMEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRL 183
Query: 996 VKAATEQFLERGHFDADNIKAKQAAMCERYENLQR 1030
+ + + H + + + + +R ++
Sbjct: 184 LFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRT 218
Score = 54.4 bits (130), Expect = 4e-08
Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 17/220 (7%)
Query: 727 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDF---EKSLAAQE-EKIKALDDLL--KVNTM 780
WM A S + +E L + F E + + K + L V
Sbjct: 26 WMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAG 85
Query: 781 QIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERD 840
Q+K + +E + R+ L+ LE R + + +
Sbjct: 86 QLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRI---------VTKLQME 136
Query: 841 CDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEA 900
+ + + D L Q+ E++L+ + + + + Q L +
Sbjct: 137 AGLAEEQLNQADALLQSDVRLLA--AGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDG 194
Query: 901 NHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQQ 940
H +++ +R+ ++ ++ T + A Q
Sbjct: 195 RHPQGEQMYRRVYRLHKRLVAIRTEYNLRLKAGVAAPATQ 234
Score = 50.5 bits (120), Expect = 7e-07
Identities = 27/215 (12%), Positives = 69/215 (32%), Gaps = 14/215 (6%)
Query: 260 IQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEGVER-DLAALEDKVSTLG 318
Q + + W+ A + ++ L + + +L A E +
Sbjct: 13 WQEYRELVLLLLQWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSK 72
Query: 319 AEADRLCGIHSDHGDQIQAKRA--EIVEYWERLTGKAKGRKQKLDESYYL--------HR 368
L G ++ ++ + W +L R+++L + +
Sbjct: 73 GIYQSLEGAVQAGQLKVPPGYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTK 132
Query: 369 FLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQ 428
+ ++ A++ +D + A + +R E + ++D + R + Q
Sbjct: 133 LQMEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQ 189
Query: 429 SLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 463
+L D H + + ++ L + T + R
Sbjct: 190 TLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRL 224
Score = 45.5 bits (107), Expect = 3e-05
Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 30/225 (13%)
Query: 485 WMAKQEAFLSNEDLGDSLDSVEALIKKHEDF---EKSLAAQE-EKIKALDEFATKLIEGQ 540
WM A S + +E L + F E + + K + + ++
Sbjct: 26 WMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEMELPAKEADKNRSKGIYQSLEGAVQAG 85
Query: 541 HYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQ 600
+ K L R L ++ + + +
Sbjct: 86 QLKVPP-GYHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRI--------------- 129
Query: 601 KLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 660
+ + + ++ A++ +D + A + +R E + ++D +
Sbjct: 130 -------VTKLQMEAGLAEEQLNQADALLQSDV---RLLAAGKVPQRAGEVERDLDKADS 179
Query: 661 SFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERR 705
R + Q+L D H + + ++ L + T + R
Sbjct: 180 MIRLLFNDVQTLKDGRHPQGEQMYRRVYRLHKRLVAIRTEYNLRL 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 4e-13
Identities = 104/635 (16%), Positives = 200/635 (31%), Gaps = 164/635 (25%)
Query: 470 MDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKAL 529
MD + + D ++AF+ N D D D ++++ K E+ + + +++ L
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTL 65
Query: 530 DEFATKLIEG----QHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIV 585
F T L + Q + + + L+ ++ R+ +++ Y +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQRQPSMMTRMY--------I 113
Query: 586 EYWERLTGK----AKG---RKQKLDESYYLHRFLADYRDLISWVS--DM----KAIISAD 632
E +RL AK R Q + L + L + R V + K
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLK---LRQALLELRP-AKNVLIDGVLGSGKTW---- 165
Query: 633 ELAKDVAGAEALLERHQEHKGEID----AREDSFRGTADAGQSL---LDRNHYAADDIRE 685
+A DV + + + +I +S + Q L +D N + D
Sbjct: 166 -VALDVCLSYKVQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 686 KLR-NLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLG--- 741
++ + + + L L + + YE C+ L + + A W AF +L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKP--YENCL---LVLLNVQNAKAW----NAF----NLSCKI 268
Query: 742 -----DS--LDSVEALIKKH---EDFEKSLAAQEEK---IKALD----DL----LKVNTM 780
D + A H + +L E K +K LD DL L N
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 781 QIKALDEFATKLIEG-------QHYAADDVAQRRDLLLKRRAGLLEKSARRR-----AIL 828
++ ++ A + +G +H D + + L +LE + R+ ++
Sbjct: 329 RL-SI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLN----VLEPAEYRKMFDRLSVF 381
Query: 829 EDSYK----------FQQFERDCDE------TKSWVTEKLK---FANDDNYLD-PTNLNG 868
S F + D S V ++ K + YL+ L
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 869 KVQKHQNFEQELNANKTRMDEITSTGQE-----------LLEANHYASDK---------- 907
+ H++ N KT + L H
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 908 -IRQRMEQIVHLWESLATATEKKGNKLQE--------ASQQQGFNRTIEDIELWLSEIEG 958
+ Q++ W + + N LQ+ + R + I +L +IE
Sbjct: 502 FLEQKIRHDSTAWNASGSIL----NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 959 QLMSEDYGKDLTSVQ-NLQKKHALLEADVASHLDR 992
L+ Y DL ++ L + + + + R
Sbjct: 558 NLICSKY-TDL--LRIALMAEDEAIFEEAHKQVQR 589
Score = 68.3 bits (166), Expect = 1e-11
Identities = 100/675 (14%), Positives = 179/675 (26%), Gaps = 236/675 (34%)
Query: 4 ITVKEVK-ILETANDIQ----------ERREQVLNRYAD-------------FKSEAR-- 37
++ +E+ I+ + + + ++E+++ ++ + K+E R
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 38 --------SKREKL-EDSRRFQYFKRDADELESWIYEKLQAASDESY----------KET 78
+R++L D++ F + + + + L K
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 79 TNLQA----KIQKHQAFE------AEVAAHSNAIVVLDN---TGKEMINQNHFASEVIRK 125
L K+Q F+ + + +L S I+
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 126 RLEEL-HRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKE---AF------- 174
R+ + L LL SK E + LVL V + + AF
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL-----LVL-------LNV--Q--NAKAWNAFNLSCKIL 269
Query: 175 VT------ADEFGADLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKL---VLEGHPE 225
+T D A L D + + ++ L VL +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 226 R-ETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSD 284
R I + W K + + + I+ VL
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTI-----IESSL--------------NVLEPA 369
Query: 285 EYGR---DLA--------SVQTLQR-----KHEGVERDLAALEDKVSTLGAEADRLCGIH 328
EY + L+ L V + L + I
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 329 SDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLAD-YRDLISWVSDMKAII 387
S + + K KL+ Y LHR + D Y ++ SD
Sbjct: 430 SIYLEL----------------------KVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 388 SADE-----LAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIR 442
D+ + H + E R FR LD +
Sbjct: 468 YLDQYFYSHIG-----------HHLK-NIEHPERMTLFR------MVFLDFRF-----LE 504
Query: 443 EKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSL 502
+K+R H T W + L+ FY+ ++ + D
Sbjct: 505 QKIR-------HDSTAWNASGSILNTLQQLK-FYKP-------------YICDND----- 538
Query: 503 DSVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLL 562
E L+ DF L + LI ++ DLL R L+
Sbjct: 539 PKYERLVNAILDF-------------LPKIEENLICSKY---------TDLL---RIALM 573
Query: 563 EKSARRRAILEDSYK 577
+ AI E+++K
Sbjct: 574 AEDE---AIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 6e-10
Identities = 106/644 (16%), Positives = 186/644 (28%), Gaps = 222/644 (34%)
Query: 115 QNHFASEVIRKRLEELHRLWELLLSKLAEKGMKLQQ------ALVLV-QFIRQCDEVMFW 167
+ F + +L E L E LV +F+
Sbjct: 25 ASFFIAS----------QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL--------- 65
Query: 168 INDKEAFVTAD-EFGADLEHVEVLQRKFDEFQKDMASQEY-RVTEVNQLADKLVLEGHPE 225
+V++ E + +VL EF+ Y +++ LA KL+ E
Sbjct: 66 -----GYVSSLVEPSKVGQFDQVLNLCLTEFE-----NCYLEGNDIHALAAKLL----QE 111
Query: 226 RETIVRRKEELSEAWMRLKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVL---- 281
+T + + +EL + ++ + +A + R E A + A+
Sbjct: 112 NDTTLVKTKELIKNYITARIMA---KRPFDKKSN-SALFRAVGEGNAQLV---AIFGGQG 164
Query: 282 SSDEYGRDLASVQTLQRKHEGVERDL-AALEDKVSTLGAEADRLCGIHSDHGDQIQAKRA 340
++D+Y +L + L + + + DL + +S L + + G I
Sbjct: 165 NTDDYFEEL---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNILE--- 217
Query: 341 EIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAE 400
W L + D+ Y L IS +I +LA V A+
Sbjct: 218 -----W--LENPS----NTPDKDY-----LLSI--PISCP-----LIGVIQLAHYVVTAK 254
Query: 401 ALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAA------DDIREKLRNLENDKTH 454
L E + +G Q L+ A D
Sbjct: 255 LLGFTPGELR-------SYLKGATGHSQGLV-----TAVAIAETDS-------------- 288
Query: 455 LLTLWEERRILYEQCMDLQLFYRDTEQADTWM-----AKQEAF----LSNEDLGDSLD-- 503
WE F+ +A T + EA+ L L DSL+
Sbjct: 289 ----WES-------------FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 504 --------SVEALIKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLL 555
S+ L QE+ +++ + L G+ V ++L++
Sbjct: 332 EGVPSPMLSISNL------------TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 556 KRRAG----L--LEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESY-YL 608
+G L L + R+ S Q + ++KL S +L
Sbjct: 380 ---SGPPQSLYGLNLTLRKAKA--PSGLDQ-------------SRIPFSERKLKFSNRFL 421
Query: 609 ------H-RFLADYRDLI-SWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED 660
H L DLI + +A ++ V + G D R
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---------YDTFDGS-DLRVL 471
Query: 661 SFRGTADAGQSLLDRNHYAADDI-REKL---RNLENDKTHLLTL 700
S S+ +R D I R + + TH+L
Sbjct: 472 S--------GSISER---IVDCIIRLPVKWETTTQFKATHILDF 504
Score = 53.9 bits (129), Expect = 3e-07
Identities = 99/603 (16%), Positives = 162/603 (26%), Gaps = 244/603 (40%)
Query: 513 EDFEKSLAAQEEKIKALDEFATKLIE--GQ--HYAADDVAQRRDLLLKRRAGLLEKSARR 568
E F K L E A DE T E G+ Y + V K +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTP-AELVGKFLGYVSSLVEP-------------SKVGQF 80
Query: 569 RAILEDSYKFQQFEEIVEYWERLTGK---------------AKGRKQKLDESYYLHRFLA 613
+L +FE Y L G + ++L ++Y R +A
Sbjct: 81 DQVLNLC--LTEFEN--CY---LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 614 DYRD-------LISWVSDMKAIISA------------DELAK--DV--AGAEALLERHQE 650
L V + A + A +EL L++ E
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 651 H-----KGEIDAREDSFRGTADAGQSLLDRN------------------------HYAA- 680
+ +DA E F + + L + + HY
Sbjct: 194 TLSELIRTTLDA-EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 681 --------DDIREKLRNLENDKTHLLT--------LWEERRILYEQCMDLQLFYRDTEQA 724
++R L+ L+T WE F+ +A
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES-------------FFVSVRKA 299
Query: 725 DTWM-----AKQEAF----LSNEDLGDSLD----------SV-----EALIKKHEDFEKS 760
T + EA+ L L DSL+ S+ E +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 761 LAAQEEKIK-ALDDLLKVNTMQ-------IKALDEFATKLIEGQHYAADDVAQRRDLLLK 812
L A ++++ +L VN + ++L L R+ K
Sbjct: 360 LPA-GKQVEISL-----VNGAKNLVVSGPPQSLYGLNLTL-------------RK---AK 397
Query: 813 RRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFAND---------DNYLDP 863
+G L++S R F + KLKF+N + L P
Sbjct: 398 APSG-LDQS---RI------PFSE-------------RKLKFSNRFLPVASPFHSHLLVP 434
Query: 864 TNLNGKVQKHQNFEQELNANKTRMDEI----TSTGQELLEANHYASDKIRQRM-EQIVHL 918
+ + + ++ N + I T G +L S I +R+ + I+ L
Sbjct: 435 AS---DLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDLRV----LSGSISERIVDCIIRL 486
Query: 919 ---WESL----AT--------ATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSE 963
WE+ AT G G R I ++ +
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV-RVIV-----AGTLDIN-PDD 539
Query: 964 DYG 966
DYG
Sbjct: 540 DYG 542
Score = 51.2 bits (122), Expect = 2e-06
Identities = 72/460 (15%), Positives = 131/460 (28%), Gaps = 174/460 (37%)
Query: 8 EVKILETANDI--------------QERREQVLNRYADFKSEARSKREKLEDSRRFQ--- 50
E LE NDI + ++++ Y + A+ +K +S F+
Sbjct: 92 ENCYLEG-NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 51 ------------------YFKRDADELESWIYEKLQAASDESYKETTNLQAKIQKH-QAF 91
YF +EL +Y+ +Y + I+ +
Sbjct: 151 EGNAQLVAIFGGQGNTDDYF----EELRD-LYQ--------TYH--VLVGDLIKFSAETL 195
Query: 92 EAEVAAHSNAIVV----------LDNTGKE--------------MIN--Q-NHFASEVIR 124
+ +A V L+N +I Q H+ V
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV--VTA 253
Query: 125 KRL----EELHRLWELLLSKLAEKGMKLQQALVLVQ------FIRQCD---EVMFWI--N 169
K L EL L L A+ + + F V+F+I
Sbjct: 254 KLLGFTPGELRSY----LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 170 DKEAF----VTADEFGADLEHVE---------------VLQRKFDEFQKDMASQEY-RVT 209
EA+ + LE+ E +Q ++ + + + ++
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 210 EVNQLADKLVLEGHPER----ETIVRRKEELSEAWMRLKQL-ALMRQEKLFGAHEIQRF- 263
VN A LV+ G P+ +R+ +A L Q + KL ++ RF
Sbjct: 370 LVNG-AKNLVVSGPPQSLYGLNLTLRKA----KAPSGLDQSRIPFSERKLKFSN---RFL 421
Query: 264 ----------NRDADETV-AWIAEKDAVLSSDEYGRDLA-SV-QTLQRKHEGVERDLAAL 310
A + + + + + + +D+ V T +G DL L
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFN----AKDIQIPVYDT----FDG--SDLRVL 471
Query: 311 EDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLT 350
+ ++R+ D I WE T
Sbjct: 472 SGSI------SERIV-------DCIIRLPV----KWETTT 494
Score = 48.5 bits (115), Expect = 1e-05
Identities = 58/347 (16%), Positives = 95/347 (27%), Gaps = 140/347 (40%)
Query: 715 QL---FYRDTEQADTWMAKQEAFLSNEDL-GDSLDSVEALIKKHEDFEKSLAAQEEKIKA 770
QL F + + A + + +L G L V +L+ + K+
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV------------EPSKVGQ 79
Query: 771 LDDLLKVNTMQIKALDEFATKLIEGQ--HYAA--------DDVAQRRDLL---------L 811
D +L + L EF +EG H A + + ++L+
Sbjct: 80 FDQVLNL------CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 812 KRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFA------NDDNYLDPTN 865
KR SA RA+ E + + A N D+Y +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQL-------------------VAIFGGQGNTDDYFE--- 171
Query: 866 LNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWESLATA 925
EL R ++ T L+ D I + + L E + T
Sbjct: 172 -------------EL-----R--DLYQTYHVLVG------DLI-KFSAE--TLSELIRTT 202
Query: 926 TEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTS----------VQNL 975
+ E QG +I WL +DY L S +Q
Sbjct: 203 LD------AEKVFTQGL-----NILEWLEN-PSNTPDKDY---LLSIPISCPLIGVIQLA 247
Query: 976 Q-----KKHALLEADVASHLD----RIESVKAAT--------EQFLE 1005
K ++ S+L + + A E F
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Score = 47.4 bits (112), Expect = 3e-05
Identities = 42/261 (16%), Positives = 75/261 (28%), Gaps = 86/261 (32%)
Query: 755 EDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRR 814
E F K L E A DD + E K + Y + V
Sbjct: 35 EQFNKILPEPTEGF-AADD-------EPTTPAELVGKFL---GYVSSLVEP--------- 74
Query: 815 AGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQ 874
K + +L +FE YL+ ++ H
Sbjct: 75 ----SKVGQFDQVLNLC--LTEFENC-------------------YLEGNDI------H- 102
Query: 875 NFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQIVHLWES-LATATEKKGNKL 933
+L D +EL++ N+ + + +R S L A + +L
Sbjct: 103 ALAAKLLQEN---DTTLVKTKELIK-NYITARIMAKRPFDKKS--NSALFRAVGEGNAQL 156
Query: 934 QEASQQQGFNRTIEDIELWLSEIEGQLMSEDYGKDLTSVQNLQKKHALLEAD----VASH 989
+ F GQ ++DY ++L ++L + + +L D A
Sbjct: 157 --VAI---FG--------------GQGNTDDYFEEL---RDLYQTYHVLVGDLIKFSAET 194
Query: 990 LDRIESVKAATEQFLERGHFD 1010
L + E+ +G +
Sbjct: 195 LSELIRTTLDAEKVFTQG-LN 214
Score = 45.0 bits (106), Expect = 1e-04
Identities = 79/518 (15%), Positives = 153/518 (29%), Gaps = 163/518 (31%)
Query: 28 RYADFKSEARSKREKLEDSRRFQYFKRDADELESWIYEKLQ-------AASDESYKETTN 80
++ + S S E + + Q E E+ L+ AA +TT
Sbjct: 63 KFLGYVS---SLVEPSKVGQFDQVLNLCLTEFENCY---LEGNDIHALAAKLLQENDTTL 116
Query: 81 LQAK--IQKHQAFEAEVAA-------HSNAIVVLDNTGKEMI--------NQNHFASEVI 123
++ K I+ A + A ++A+ G + N + +
Sbjct: 117 VKTKELIK--NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY----- 169
Query: 124 RKRLEELHRLWEL-------LLSKLAEKGMKLQQALVLVQ--FIRQCDEVMFWINDKEAF 174
EEL L++ L+ AE +L + + + F + + ++ W+ +
Sbjct: 170 ---FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSN- 224
Query: 175 VTADEFGADLEHVEV-------LQRKFDEFQKDMASQEYRVT------EVNQLADKLV-L 220
T D+ L + + +Q +A Y VT +L L
Sbjct: 225 -TPDK--DYLLSIPISCPLIGVIQ---------LAH--YVVTAKLLGFTPGELRSYLKGA 270
Query: 221 EGHPERETIVRRKEELSEAWMRLKQLALMRQEKLF--GAHEIQRFNRDADETVAWIAEKD 278
GH + + +++W LF G + + +
Sbjct: 271 TGHSQ-GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-------LPPS 322
Query: 279 AVLSSDEYGRDLAS----VQTLQRKHEGVERDLAAL------EDKVS-TL---------- 317
+ S E + S + L ++ V+ + +V +L
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 318 GAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTG----KAKGRKQKLDESY-YL------ 366
G L G++ ++ +A +G + ++KL S +L
Sbjct: 381 GPPQS-LYGLNL----TLRKAKAP--------SGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 367 H-RFLADYRDLI-SWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTA 424
H L DLI + +A ++ V + G D R S
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---------YDTFDGS-DLRVLS----- 472
Query: 425 DAGQSLLDRNHYAADDI-REKL---RNLENDKTHLLTL 458
S+ +R D I R + + TH+L
Sbjct: 473 ---GSISER---IVDCIIRLPVKWETTTQFKATHILDF 504
Score = 33.1 bits (75), Expect = 0.69
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 37/114 (32%)
Query: 918 LWE----SLATATEKKGNKLQEASQQQ------GF-NRTIED---------IELWLSEIE 957
L E L TE + + + G+ + +E + L L+E E
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 958 GQLMSEDYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDA 1011
+ G D+ HAL A+ L + + L + + A
Sbjct: 93 NCYLE---GNDI---------HAL-----AAKLLQENDTTLVKTKELIKNYITA 129
Score = 32.3 bits (73), Expect = 1.0
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 32/110 (29%)
Query: 907 KIRQRMEQIVHLWESLATATEKKGNKLQEASQQQGFNRTIEDIELWLSEIEGQLMSEDYG 966
+IR+ ++ +E++ K +E N + SE +G L
Sbjct: 1683 RIRENYSAMI--FETIVDGKLKTEKIFKEI------NEHSTSY-TFRSE-KGLL------ 1726
Query: 967 KDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLERGHFDADNIKA 1016
T Q Q AL + KAA E +G AD A
Sbjct: 1727 -SAT--QFTQP--ALT---LME--------KAAFEDLKSKGLIPADATFA 1760
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 40.6 bits (95), Expect = 0.003
Identities = 40/265 (15%), Positives = 97/265 (36%), Gaps = 17/265 (6%)
Query: 781 QIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKS---ARRRAILEDSYKFQQF 837
+++A DE + E Q A A+ ++L K EK+ + +A E + ++
Sbjct: 858 EMQAKDEELQRTKERQQKAE---AELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914
Query: 838 ERDCDETKSWVTEKLKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQEL 897
K + E L + + + +Q++ + +++E + Q+L
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974
Query: 898 LEANHYASDKIRQRMEQIVHLWESLATATEKKGNKLQEASQQ-----QGFNRTIEDIELW 952
A KI++ + I+ + + T+++ L+E +++
Sbjct: 975 QLEKVTADGKIKKMEDDILIMEDQNNKLTKER-KLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 953 LSEIEGQL--MSEDYGKDLTSVQNLQKKHALLEADVAS---HLDRIESVKAATEQFLERG 1007
++ E + + K+ S Q L+K LE + + + +++ A + L +
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 1008 HFDADNIKAKQAAMCERYENLQRPI 1032
+ A+ + N + I
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKI 1118
Score = 38.3 bits (89), Expect = 0.014
Identities = 42/324 (12%), Positives = 110/324 (33%), Gaps = 38/324 (11%)
Query: 626 KAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIRE 685
+ + L + + L +E + + A++ ++ ++ + ++
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 686 KLRNLENDKTHLLTLWEE----RRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLG 741
+ + ++ L EE R+ L + + + E M Q L+ E
Sbjct: 949 EKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE--- 1005
Query: 742 DSLDSVEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAAD 801
+ L ++ D +LA +EEK K +L K+ + E +L + + +
Sbjct: 1006 -----RKLLEERVSDLTTNLAEEEEKAK---NLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 802 DVAQRRDLL--LKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEKLKFANDDN 859
+R L + + + A L+ ++ E + +D
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL----------QAALARLEDE 1107
Query: 860 YLDPTNLNGKV----QKHQNFEQELNANKTRMDEITSTGQELLEANHYASDKIRQRMEQI 915
N K+ + +++L + K ++ ++L S+++ ++
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL-------SEELEALKTEL 1160
Query: 916 VHLWESLATATEKKGNKLQEASQQ 939
++ AT E +G+ ++ +
Sbjct: 1161 EDTLDTTATQQELRGSDYKDDDDK 1184
Score = 37.5 bits (87), Expect = 0.027
Identities = 57/372 (15%), Positives = 129/372 (34%), Gaps = 54/372 (14%)
Query: 333 DQIQAKRAEIVEYWERLTGKAKGRKQKLDESYYLHRFLADYRDLISWVSDMKAIISADEL 392
+++QAK E+ ER KA+ ++L++ + + + L
Sbjct: 857 EEMQAKDEELQRTKERQQ-KAEAELKELEQKH------------------TQLCEEKNLL 897
Query: 393 AKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDK 452
+ + L +E + + A++ ++ ++ + ++ + + ++
Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Query: 453 THLLTLWEE----RRILYEQCMDLQLFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEAL 508
L EE R+ L + + + E M Q L+ E + L
Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE--------RKLL 1009
Query: 509 IKKHEDFEKSLAAQEEKIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARR 568
++ D +LA +EEK K L + K ++ R K R L + +
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHES----MISELEVRLKKEEKSRQELEKIKRKL 1065
Query: 569 RAILED-SYKFQQFEEIVEYWERLTGKAKGRKQKL-----DESYYLHRFLADYRDLISWV 622
D + + + + + K + Q DE+ + L R+L S +
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125
Query: 623 SDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADAGQSLLDRNHYAADD 682
SD++ ++L + A ++ ++ E++A + T D + +
Sbjct: 1126 SDLQ-----EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ--------QE 1172
Query: 683 IREKLRNLENDK 694
+R ++DK
Sbjct: 1173 LRGSDYKDDDDK 1184
Score = 36.4 bits (84), Expect = 0.056
Identities = 45/277 (16%), Positives = 109/277 (39%), Gaps = 22/277 (7%)
Query: 747 VEALIKKHEDFEKSLAAQEEKIKALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQR 806
++ ++ + E L E+K L + + +++A E + E + A +
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 807 RDLLLKRRAGLLEKSARRRAILEDSYKFQQ----FERDCDETKSWVTEKLKFANDDNYLD 862
++L + A + E+ R + + + K QQ E +E ++ +KL+
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA-ARQKLQLEKVTADGK 984
Query: 863 PTNLNGKVQKHQNFEQELNANKTRMDE-ITSTGQELLEANHYASD--KIRQRMEQIVHLW 919
+ + ++ +L + ++E ++ L E A + K++ + E ++
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Query: 920 ESLATATEKKGNKLQEASQQ-----QGFNRTIEDIELWLSEIEGQL---------MSEDY 965
E EK +L++ ++ + I +++ ++E++ QL
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARL 1104
Query: 966 GKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQ 1002
+ + N KK LE+ ++ + +ES KAA +
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Score = 34.8 bits (80), Expect = 0.20
Identities = 37/360 (10%), Positives = 125/360 (34%), Gaps = 47/360 (13%)
Query: 3 QITVKEVKILETANDIQERREQVLNRYADFKSEARSKREKLEDSRRFQYFKRDADELESW 62
+ ++ K +++++ Q+ + + +++ E ++ + +
Sbjct: 868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEE 927
Query: 63 IYEKLQAASDESYKETTNLQAKIQKHQAFEAEVAAHSNAIVVLDNTGKEMINQNHFASEV 122
I +++A +E + + LQA+ +K + ++ + + +++ + A
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEKKK---MQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Query: 123 IRKRLEELHRLWELLLSKLAEKGMKLQQALVLVQFIRQCDEVMFWINDKEAFVTADEFGA 182
I+K +++ + E +KL ++ L++ + +
Sbjct: 985 IKKMEDDI-LIMEDQNNKLTKERKLLEERVSDLT-------------------------- 1017
Query: 183 DLEHVEVLQRKFDEFQKDMASQEYRVTEVNQLADKLVLEGHPERETIVRRKEELSEAWMR 242
++ + K K E + +++L +L E R+ + + K +L E
Sbjct: 1018 --TNLAEEEEKAKNLTKLKNKHE---SMISELEVRLKKEEK-SRQELEKIKRKL-EGESS 1070
Query: 243 LKQLALMRQEKLFGAHEIQRFNRDADETVAWIAEKDAVLSSDEYGRDLASVQTLQRKHEG 302
+ + + Q ++ + A + + +K
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAA----------LARLEDETSQKNNALKKIRE 1120
Query: 303 VERDLAALEDKVSTLGAEADRLCGIHSDHGDQIQAKRAEIVEYWERLTGKAKGRKQKLDE 362
+E ++ L++ + + A ++ D ++++A + E+ + + + + R +
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKD 1180
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.2 bits (89), Expect = 0.015
Identities = 40/311 (12%), Positives = 101/311 (32%), Gaps = 27/311 (8%)
Query: 549 QRRDLLLKRRAGLLEKSAR-----------RRAILEDSYKFQQFEEIVEYWERLTGKAKG 597
+ R L+ ++K+ R RRA + + + +A
Sbjct: 761 KIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAI 820
Query: 598 RKQKLDESYYLHRFLADYRDLISWV-SDMKAIISADELAKDVAGAEALLERHQEHKGEID 656
QK Y + + RD + + ++ + ++ + ++++ +
Sbjct: 821 IIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLAR 880
Query: 657 AREDSFRGTADAGQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQL 716
Q R + +L+ L+ + + + L + M LQ
Sbjct: 881 VHYHRTLKAIVYLQCCYRRMM-----AKRELKKLKIEARSVERYKKLHIGLENKIMQLQR 935
Query: 717 FYRDTEQADTW------MAKQEAFLSNE--DLGDSLDSVEALIKKHEDFEKSLAAQEEKI 768
+ EQ + M E S E L ++ + ++ ++ + + +E+I
Sbjct: 936 --KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 769 KALDDLLKVNTMQIKALDEFATKLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAIL 828
L L + K ++E+A K ++ ++ LL + L + + +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Query: 829 EDSYKFQQFER 839
++ + + E
Sbjct: 1054 TETMEKKLVEE 1064
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.22
Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 57/240 (23%)
Query: 801 DDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFERDCDETKSWVTEK--------- 851
V + ++ K R L+E S R+A+ ++ + ++ +
Sbjct: 732 QFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQL 791
Query: 852 ----LKFANDDNYLDPTNLNGKVQKHQNFEQELNANKTRMDEITSTGQELLEANHYASDK 907
LK + P L G + + R+ +T E + S +
Sbjct: 792 DFPELKPYKQVKQIAPAELEGLL------------DLERVIVVTGFA----EVGPWGSAR 835
Query: 908 IRQRMEQIVHLWESLATATE--------KKGNKLQEASQQQGF-----NRTIEDIELWLS 954
R ME SL E N + G+ ++D
Sbjct: 836 TRWEMEAFGEF--SLEGCVEMAWIMGFISYHNGNLKGRPYTGWVDSKTKEPVDD-----K 888
Query: 955 EIEGQLMSE--------DYGKDLTSVQNLQKKHALLEADVASHLDRIESVKAATEQFLER 1006
+++ + + +L + N +KK + E V L+ E+ K EQF +
Sbjct: 889 DVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQ 948
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo
sapiens}
Length = 129
Score = 32.3 bits (73), Expect = 0.29
Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 23/130 (17%)
Query: 475 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDEFAT 534
+ + + WM L + + +++ +E LI H+ F+ +L + + +A+
Sbjct: 17 YAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIHK 76
Query: 535 KLIEGQHYAADDVAQRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGK 594
+ + +S + + Y + I WE++
Sbjct: 77 EAQR-----------------------IAESNHIKLSGSNPYTTVTPQIINSKWEKVQQL 113
Query: 595 AKGRKQKLDE 604
R L E
Sbjct: 114 VPKRDHALLE 123
Score = 31.9 bits (72), Expect = 0.34
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 717 FYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
+ + + WM L + + +++ +E LI H+ F+ +L + + +A+ +
Sbjct: 17 YAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAI 74
Score = 30.8 bits (69), Expect = 0.81
Identities = 13/108 (12%), Positives = 37/108 (34%), Gaps = 7/108 (6%)
Query: 154 LVQFIRQCDEVMFWINDKEAFVTADEFGADLEHVEVLQRKFDEFQKDMASQEYR------ 207
+++ ++ W+ + +E +E L D+F+ + +
Sbjct: 14 HLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILA 73
Query: 208 -VTEVNQLADKLVLEGHPERETIVRRKEELSEAWMRLKQLALMRQEKL 254
E ++A+ ++ + ++ W +++QL R L
Sbjct: 74 IHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVPKRDHAL 121
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 33.9 bits (78), Expect = 0.33
Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 32/226 (14%)
Query: 549 QRRDLLLKRRAGLLEKSARRRAILEDSYKFQQFEEIVEYWERLTGKAKGRKQKLDESYYL 608
+ + + + + L+ + + E V + L+++
Sbjct: 802 EYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQE 861
Query: 609 HRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDAREDSFRGTADA 668
H K + + + + E + G + +
Sbjct: 862 HAEALRIELK----RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD--------- 908
Query: 669 GQSLLDRNHYAADDIREKLRNLENDKTHLLTLWEERRILYEQCMDLQLFYRDTEQADTWM 728
+ ++ KL+NLE +L + + QL +
Sbjct: 909 ----------SITAVQAKLKNLEAFDGECQSLEGQSNSDLLS-ILAQLTELNYNGVPELT 957
Query: 729 AKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
+++ F + + + E ++ +L A+ E+++ ++DL
Sbjct: 958 ERKDTFFAQQ--------WTGVKSSAETYKNTLLAELERLQKIEDL 995
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 1.3
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 971 SVQNLQKKHALLEADVASHLDRIESVKAATE 1001
+++ LQ L D A L ++KA E
Sbjct: 21 ALKKLQASLKLYADDSAPAL----AIKATME 47
>3lo7_A PBPA, penicillin-binding protein A; transpeptidase domain, cell
membrane, cell shape, cell WALL biogenesis/degradation,
membrane; 2.05A {Mycobacterium tuberculosis}
Length = 483
Score = 30.7 bits (70), Expect = 3.0
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 363 SYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA 415
SYY H DY D+ + D LL+ + +G+I A
Sbjct: 2 SYYHHHHHHDY-DIPTEN----LYFQGAMGRADPRNQRVLLDEYSRQRGQITA 49
Score = 30.7 bits (70), Expect = 3.0
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 605 SYYLHRFLADYRDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDA 657
SYY H DY D+ + D LL+ + +G+I A
Sbjct: 2 SYYHHHHHHDY-DIPTEN----LYFQGAMGRADPRNQRVLLDEYSRQRGQITA 49
>4dqz_A Methyltransferase type 12; ligase-activating, bacterial PNKP; 2.30A
{Clostridium thermocellum} PDB: 4drf_B 4e6n_B*
Length = 230
Score = 29.7 bits (67), Expect = 3.5
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 6/23 (26%)
Query: 216 DKLV------LEGHPERETIVRR 232
DKL L HPE+E I R
Sbjct: 203 DKLFQHGEGWLVDHPEKELITGR 225
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 30.4 bits (69), Expect = 3.5
Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 20/128 (15%)
Query: 675 RNHYAADDIREKLRNLENDKT---HLLTLWEERRILYEQCMDLQ---------------- 715
R+ A+ IRE R D ++ ++ R +
Sbjct: 14 RDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKA 73
Query: 716 -LFYRDTEQADTWMAKQEAFLSNEDLGDSLDSVEALIKKHEDFEKSLAAQEEKIKALDDL 774
DT + + + + + V L + +D +A ++ + L++
Sbjct: 74 KEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEE 133
Query: 775 LKVNTMQI 782
+ +
Sbjct: 134 RDKLMLNV 141
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 29.2 bits (65), Expect = 9.1
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 374 RDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED---SFRGTADAGQSL 430
L+ + MK I S +E A + L++ I R A+ ++
Sbjct: 624 NRLLENLCRMKEIFSEEEYEVMSADRKELIKEISHRVSAIKVLVRDMTEARKVANHKENF 683
Query: 431 LDRNHYAADDIR---EKLR 446
++ + +R E +R
Sbjct: 684 KEKAFAYEETVRPYLESIR 702
Score = 29.2 bits (65), Expect = 9.1
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 616 RDLISWVSDMKAIISADELAKDVAGAEALLERHQEHKGEIDARED---SFRGTADAGQSL 672
L+ + MK I S +E A + L++ I R A+ ++
Sbjct: 624 NRLLENLCRMKEIFSEEEYEVMSADRKELIKEISHRVSAIKVLVRDMTEARKVANHKENF 683
Query: 673 LDRNHYAADDIR---EKLR 688
++ + +R E +R
Sbjct: 684 KEKAFAYEETVRPYLESIR 702
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.364
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 16,020,634
Number of extensions: 1027206
Number of successful extensions: 3714
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3309
Number of HSP's successfully gapped: 375
Length of query: 1032
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 929
Effective length of database: 3,825,930
Effective search space: 3554288970
Effective search space used: 3554288970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.4 bits)