Query psy694
Match_columns 306
No_of_seqs 175 out of 2248
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 22:38:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3713|consensus 100.0 8.6E-41 1.9E-45 299.1 22.0 241 2-250 201-451 (477)
2 KOG1545|consensus 100.0 6.6E-37 1.4E-41 262.3 6.8 232 1-238 199-455 (507)
3 KOG1419|consensus 100.0 2.6E-28 5.7E-33 219.7 10.4 227 3-250 103-343 (654)
4 KOG4390|consensus 99.9 7.9E-29 1.7E-33 214.8 -8.4 220 2-238 194-418 (632)
5 PLN03192 Voltage-dependent pot 99.9 2.5E-24 5.5E-29 215.3 22.2 222 30-271 91-342 (823)
6 KOG0498|consensus 99.9 2.3E-23 5.1E-28 198.8 19.8 233 29-275 115-390 (727)
7 KOG2302|consensus 99.9 1.3E-20 2.8E-25 179.0 19.9 239 1-257 1132-1419(1956)
8 KOG0501|consensus 99.8 2.3E-19 4.9E-24 163.2 18.3 199 30-250 248-497 (971)
9 PF00520 Ion_trans: Ion transp 99.8 8.3E-20 1.8E-24 152.1 13.9 177 35-225 1-200 (200)
10 KOG1420|consensus 99.8 9.6E-20 2.1E-24 165.4 4.9 204 2-231 133-343 (1103)
11 KOG2301|consensus 99.7 9.3E-17 2E-21 164.8 14.8 215 2-237 1166-1408(1592)
12 KOG2301|consensus 99.7 6.8E-17 1.5E-21 165.8 13.2 202 2-233 452-666 (1592)
13 KOG0500|consensus 99.7 1.7E-15 3.6E-20 136.1 16.8 215 3-249 7-255 (536)
14 KOG2302|consensus 99.6 6.2E-15 1.3E-19 140.9 11.9 213 2-237 1450-1692(1956)
15 PLN03223 Polycystin cation cha 99.4 1.4E-11 3.1E-16 122.3 21.4 125 110-235 1296-1428(1634)
16 PRK10537 voltage-gated potassi 99.4 7.9E-12 1.7E-16 114.3 18.5 83 147-230 139-222 (393)
17 PF07885 Ion_trans_2: Ion chan 99.4 5.5E-13 1.2E-17 94.5 8.6 76 152-230 3-78 (79)
18 KOG0499|consensus 99.3 3.2E-10 7E-15 104.4 17.0 178 30-232 260-458 (815)
19 KOG3599|consensus 99.0 4.1E-08 8.9E-13 96.6 20.7 194 36-238 471-688 (798)
20 KOG4404|consensus 99.0 4.4E-09 9.5E-14 90.6 10.0 93 140-238 156-256 (350)
21 PF08016 PKD_channel: Polycyst 99.0 9.5E-08 2.1E-12 89.3 19.7 186 40-231 220-424 (425)
22 KOG3684|consensus 98.9 1.2E-07 2.7E-12 85.4 16.6 57 175-231 286-342 (489)
23 KOG1418|consensus 98.5 1.9E-06 4E-11 80.3 14.3 68 171-238 110-177 (433)
24 KOG3193|consensus 98.5 9E-07 1.9E-11 81.4 10.7 166 30-220 89-261 (1087)
25 TIGR00870 trp transient-recept 98.5 2.9E-05 6.2E-10 77.9 21.5 212 31-245 389-631 (743)
26 PF01007 IRK: Inward rectifier 98.3 2.6E-06 5.6E-11 76.4 7.3 86 146-231 40-141 (336)
27 KOG4404|consensus 97.7 0.00015 3.2E-09 63.2 7.8 57 175-231 79-135 (350)
28 KOG3609|consensus 97.5 0.0086 1.9E-07 58.7 17.2 214 31-245 381-627 (822)
29 KOG1418|consensus 97.5 7.8E-05 1.7E-09 69.4 3.5 56 175-230 241-304 (433)
30 KOG3676|consensus 97.1 0.096 2.1E-06 51.4 19.0 104 141-244 540-662 (782)
31 KOG3614|consensus 97.0 0.034 7.3E-07 57.3 16.3 203 31-244 822-1057(1381)
32 KOG3827|consensus 96.8 0.0079 1.7E-07 53.9 8.5 85 147-231 69-169 (400)
33 KOG0510|consensus 95.9 0.47 1E-05 46.9 15.7 159 57-232 587-760 (929)
34 KOG3533|consensus 95.8 0.11 2.3E-06 53.7 11.0 126 119-244 2397-2584(2706)
35 PF00060 Lig_chan: Ligand-gate 92.0 0.3 6.4E-06 38.2 4.8 55 176-231 44-98 (148)
36 PF00520 Ion_trans: Ion transp 86.1 6.5 0.00014 31.7 8.8 25 30-54 30-54 (200)
37 KOG4440|consensus 79.3 3.3 7.2E-05 40.0 4.8 57 174-230 611-667 (993)
38 KOG1053|consensus 77.9 18 0.00039 36.8 9.4 53 176-230 609-663 (1258)
39 KOG3713|consensus 77.7 65 0.0014 30.5 15.5 67 30-134 272-338 (477)
40 PF10011 DUF2254: Predicted me 77.2 32 0.00069 31.7 10.6 102 128-229 45-153 (371)
41 COG0168 TrkG Trk-type K+ trans 74.0 15 0.00033 35.2 7.8 49 176-224 424-481 (499)
42 KOG1052|consensus 73.0 13 0.00028 36.9 7.5 56 174-230 379-434 (656)
43 KOG1545|consensus 70.0 25 0.00054 31.9 7.6 43 104-147 318-360 (507)
44 KOG3733|consensus 69.1 1E+02 0.0022 28.8 11.4 48 121-168 391-438 (566)
45 KOG1054|consensus 61.8 13 0.00027 36.0 4.4 54 176-230 595-648 (897)
46 PF08016 PKD_channel: Polycyst 55.2 1.6E+02 0.0034 27.6 10.7 24 30-53 241-264 (425)
47 TIGR00933 2a38 potassium uptak 51.3 47 0.001 30.8 6.4 40 175-214 347-389 (390)
48 PRK10750 potassium transporter 48.7 1E+02 0.0022 29.6 8.3 48 176-223 421-475 (483)
49 PLN03192 Voltage-dependent pot 47.6 98 0.0021 31.8 8.6 19 65-83 93-111 (823)
50 TIGR00933 2a38 potassium uptak 45.9 40 0.00087 31.2 5.1 40 175-214 230-271 (390)
51 COG2165 PulG Type II secretory 45.6 93 0.002 23.5 6.5 35 204-238 8-42 (149)
52 PRK05482 potassium-transportin 45.6 1.5E+02 0.0033 28.9 8.8 50 175-224 450-502 (559)
53 PF15086 UPF0542: Uncharacteri 43.0 1.1E+02 0.0023 20.9 7.2 52 199-253 17-69 (74)
54 PF06305 DUF1049: Protein of u 42.3 98 0.0021 20.3 6.9 18 213-230 25-42 (68)
55 KOG3609|consensus 39.5 3.2E+02 0.0069 27.9 10.2 46 30-75 415-465 (822)
56 PLN03223 Polycystin cation cha 39.4 1.8E+02 0.004 31.6 8.8 26 57-82 1206-1231(1634)
57 TIGR01710 typeII_sec_gspG gene 37.9 1.8E+02 0.0039 22.3 6.9 29 206-234 3-31 (134)
58 COG1422 Predicted membrane pro 36.5 1.4E+02 0.0029 24.9 6.1 14 218-231 53-66 (201)
59 PRK11677 hypothetical protein; 36.2 33 0.00073 26.5 2.5 9 264-272 71-79 (134)
60 COG0168 TrkG Trk-type K+ trans 33.9 2.1E+02 0.0045 27.6 7.9 44 176-220 198-248 (499)
61 PRK10506 hypothetical protein; 33.9 2.1E+02 0.0045 22.8 6.9 34 204-237 9-42 (162)
62 TIGR01711 gspJ general secreti 33.3 2.5E+02 0.0054 23.1 7.4 31 206-236 3-33 (192)
63 PF02386 TrkH: Cation transpor 32.6 76 0.0017 28.8 4.7 44 177-220 295-345 (354)
64 KOG3012|consensus 30.2 46 0.00099 28.1 2.5 48 186-233 92-140 (259)
65 COG4795 PulJ Type II secretory 28.7 3.2E+02 0.0069 22.7 7.2 34 205-238 8-41 (194)
66 TIGR00934 2a38euk potassium up 28.3 1.9E+02 0.0042 29.5 6.8 121 70-214 521-659 (800)
67 PF06305 DUF1049: Protein of u 28.0 1.8E+02 0.0039 19.0 7.7 10 219-228 27-36 (68)
68 COG3817 Predicted membrane pro 27.9 1.4E+02 0.003 26.0 4.9 24 175-199 31-54 (313)
69 PF14163 SieB: Superinfection 27.6 2.8E+02 0.0061 21.6 6.6 57 198-254 28-84 (151)
70 PRK10750 potassium transporter 27.0 3.2E+02 0.0069 26.2 7.9 19 175-193 205-223 (483)
71 PF11773 PulG: Type II secreto 26.9 2.3E+02 0.0049 19.9 7.1 34 211-244 5-38 (82)
72 KOG2243|consensus 26.8 1.8E+02 0.0038 31.9 6.2 115 119-233 4794-4926(5019)
73 COG3105 Uncharacterized protei 23.5 3.3E+02 0.0072 20.9 5.7 14 217-230 16-29 (138)
74 TIGR01708 typeII_sec_gspH gene 23.3 3.4E+02 0.0075 20.7 6.4 29 204-232 4-32 (143)
75 TIGR02596 Verrucomicrobium spi 23.2 4E+02 0.0088 22.1 6.8 28 207-234 2-29 (195)
76 PF06295 DUF1043: Protein of u 22.3 49 0.0011 25.4 1.2 10 264-273 67-76 (128)
77 KOG4550|consensus 21.7 1.5E+02 0.0032 27.8 4.3 16 191-206 539-554 (606)
78 PF01956 DUF106: Integral memb 21.6 3.9E+02 0.0085 21.2 6.5 17 215-231 19-35 (168)
79 COG0581 PstA ABC-type phosphat 20.1 6.2E+02 0.014 22.5 9.6 34 202-235 70-103 (292)
No 1
>KOG3713|consensus
Probab=100.00 E-value=8.6e-41 Score=299.15 Aligned_cols=241 Identities=59% Similarity=1.022 Sum_probs=217.3
Q ss_pred ChhhHHHHHHHhccccccccccCC----------CCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHh
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAG----------NPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDL 71 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~----------~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~ 71 (306)
+++++++.+|+.|+|.++.....+ ....+..+.++|.++.++|++|+++|+..+++|.+|+|+..|++|+
T Consensus 201 FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDl 280 (477)
T KOG3713|consen 201 FVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDL 280 (477)
T ss_pred HHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHHHHHHHHHHHcCchHHHHHhCcchHHHH
Confidence 578999999999999988877664 3445788999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy694 72 LAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFL 151 (306)
Q Consensus 72 ~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~ 151 (306)
++++|.++++........ ....+.+...++|++|++|++|++|+.|+..++|.+..+++++.+.+..+++++
T Consensus 281 lAIlPFYielll~~~~~~--------~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL 352 (477)
T KOG3713|consen 281 LAILPFYLELLLTLFGGE--------SLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFL 352 (477)
T ss_pred HHHHHHHHHHHHHHhccc--------hHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877544331 112345556889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 152 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
++++.+||.+.|+.|+++++.+|.+.+.++||+++|||||||||.+|.|..|++++..-++.|+.++++.+.+|.++|++
T Consensus 353 ~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~ 432 (477)
T KOG3713|consen 353 AVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSM 432 (477)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy694 232 FYKNQMRREKALKRREAME 250 (306)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~ 250 (306)
.+++.+.+++..++++...
T Consensus 433 ~y~~~k~~~~~~~~~~~~~ 451 (477)
T KOG3713|consen 433 YYSELKAREKAPKRREALE 451 (477)
T ss_pred HHHHHHHHHHhhhhhcccc
Confidence 9988877776666655443
No 2
>KOG1545|consensus
Probab=100.00 E-value=6.6e-37 Score=262.32 Aligned_cols=232 Identities=46% Similarity=0.850 Sum_probs=200.9
Q ss_pred CChhhHHHHHHHhccccccccccCC------------------------CCCCCchhHHHHHHHHHHHHHHHHHHHhccc
Q psy694 1 MFIVLSTVALTLNTIPSLQHKDKAG------------------------NPIDNPKLAIVEAVCITWFSVEYLLRLGASP 56 (306)
Q Consensus 1 ~~i~~~~i~~~l~t~~~~~~~~~~~------------------------~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~ 56 (306)
+||+++++++|++|.|.+++..+.. +-..+..++++|..+.++|.+|+++|+.+|+
T Consensus 199 lVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCP 278 (507)
T KOG1545|consen 199 LVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACP 278 (507)
T ss_pred HHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCc
Confidence 3689999999999999887652111 1125678999999999999999999999999
Q ss_pred chhhhhccccchhHhHhhhhHHHHHHHhhcCCC-cchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy694 57 EKWKFFKGGLNVIDLLAIMPYYISLFLLESNST-SNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGF 135 (306)
Q Consensus 57 ~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~ 135 (306)
.|-.|+|+.-|++|+++++|.++.+........ +.....+..+ +..+|++|+.|++|++|+.|+.++++.+-+
T Consensus 279 sK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMS------lAILRViRLVRVFRIFKLSRHSkGLQILGq 352 (507)
T KOG1545|consen 279 SKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMS------LAILRVIRLVRVFRIFKLSRHSKGLQILGQ 352 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhh------HHHHHHHHHHHHhhheeeccccchHHHHHH
Confidence 999999999999999999999987754322111 1111122221 367899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHH
Q psy694 136 TLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGV 215 (306)
Q Consensus 136 ~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~ 215 (306)
+++.+++.+.++++++++++.+|++..|+.|.++++++|.+.++||||+++|||||||||.+|.|..|+++..+..+.|+
T Consensus 353 Tl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGV 432 (507)
T KOG1545|consen 353 TLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGV 432 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy694 216 LVIALPIPIIVNNFAEFYKNQMR 238 (306)
Q Consensus 216 ~~~~~~i~~i~~~~~~~~~~~~~ 238 (306)
.-+++.+.+|+++|+..|.++.+
T Consensus 433 LTiALPVPVIVsNFnyFYhrEte 455 (507)
T KOG1545|consen 433 LTIALPVPVIVSNFNYFYHRETE 455 (507)
T ss_pred eEecccccEEEecccceeecccc
Confidence 99999999999999987765543
No 3
>KOG1419|consensus
Probab=99.95 E-value=2.6e-28 Score=219.72 Aligned_cols=227 Identities=29% Similarity=0.468 Sum_probs=184.9
Q ss_pred hhhHHHHH-HHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccc---------hhhhhccccchhHhH
Q psy694 3 IVLSTVAL-TLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPE---------KWKFFKGGLNVIDLL 72 (306)
Q Consensus 3 i~~~~i~~-~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~---------~~~y~~~~~~~~D~~ 72 (306)
+++.|+.+ ++.|.+++.... ...+.++|++..++|.+|+++|+++++. |.+|.++.++++|++
T Consensus 103 lVl~CLILsV~STi~e~~~~a-------~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDii 175 (654)
T KOG1419|consen 103 LVLSCLILSVLSTIEEYEKLA-------SGILYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDII 175 (654)
T ss_pred HHHHHHHHHHhcccHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEe
Confidence 44444444 666766665555 6899999999999999999999999974 467889999999999
Q ss_pred hhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 73 AIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLA 152 (306)
Q Consensus 73 ~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~ 152 (306)
+++.++..+.....+.- .....++-+|.++++|++|+-|....|+.+-..+....+.++....+-+
T Consensus 176 vi~Asi~vl~~g~qG~v--------------fatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGF 241 (654)
T KOG1419|consen 176 VIIASIAVLAAGSQGNV--------------FATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGF 241 (654)
T ss_pred eeeeeeeEEEecCccce--------------eehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHH
Confidence 98887665544311111 0113577888999999999999999999988888888888887766666
Q ss_pred HHHHHHHHHHhhhccc----CCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 153 MGVLIFSSLAYFAEKD----EHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNN 228 (306)
Q Consensus 153 ~~~~~~a~~~~~~~~~----~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~ 228 (306)
++++..+.+.|..|++ +.+..|.+|.||+||..+|+|||||||.+|.||.||+++..+-++|+.+|++..|.+.+.
T Consensus 242 L~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSG 321 (654)
T KOG1419|consen 242 LVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSG 321 (654)
T ss_pred HHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 6666667788888876 345689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy694 229 FAEFYKNQMRREKALKRREAME 250 (306)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~ 250 (306)
|.-..+++.+++...+++....
T Consensus 322 fALKVQeq~RQKHf~rrr~pAA 343 (654)
T KOG1419|consen 322 FALKVQEQHRQKHFNRRRNPAA 343 (654)
T ss_pred hhhhhHHHHHHHHHHhhcchHH
Confidence 9988888888888888776443
No 4
>KOG4390|consensus
Probab=99.93 E-value=7.9e-29 Score=214.77 Aligned_cols=220 Identities=41% Similarity=0.832 Sum_probs=190.4
Q ss_pred ChhhHHHHHHHhccccc-----cccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhh
Q psy694 2 FIVLSTVALTLNTIPSL-----QHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMP 76 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~-----~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip 76 (306)
.|.++.+.-+.+|.|-- ..+-.||.-+ ...++.+|..+.++|..|+++|+++++.+.+|+|+.-.++|+++++|
T Consensus 194 FIAVSVi~NvVETiPCg~~~~~~~e~pCGEry-~~aFFclDTACVmIFT~EYlLRL~aAPsR~rF~RSvMSiIDVvAIlP 272 (632)
T KOG4390|consen 194 FIAVSVIANVVETIPCGGSPGRSKELPCGERY-PVAFFCLDTACVMIFTGEYLLRLFAAPSRYRFLRSVMSIIDVVAILP 272 (632)
T ss_pred hhhhhhhhceeeecccCCCCCCceeccccccc-ceeeEEecceeEEEeeHHHHHHHHcCchHHHHHHHHHHHHHHhhhhh
Confidence 46677777788887621 1122344433 56788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 77 YYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVL 156 (306)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~ 156 (306)
.++.+........ ...+-.+|.+|++|++|..|+..+++.+..++.+....++.+++-+...++
T Consensus 273 YYigLv~t~N~DV----------------SGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAII 336 (632)
T KOG4390|consen 273 YYIGLVMTDNEDV----------------SGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAII 336 (632)
T ss_pred hheEEEecCCccc----------------cceeEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 9998776443322 123446788889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 157 IFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQ 236 (306)
Q Consensus 157 ~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~ 236 (306)
+||.++|+.|++....+|.+.+.|||++++||||.||||.+|.+..|+++..+.-+.|+.++++.+.+|+++|+..+.+.
T Consensus 337 IFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQN 416 (632)
T KOG4390|consen 337 IFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQN 416 (632)
T ss_pred HHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977665
Q ss_pred HH
Q psy694 237 MR 238 (306)
Q Consensus 237 ~~ 238 (306)
++
T Consensus 417 QR 418 (632)
T KOG4390|consen 417 QR 418 (632)
T ss_pred hh
Confidence 44
No 5
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.93 E-value=2.5e-24 Score=215.27 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccc--------------chhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhh
Q psy694 30 NPKLAIVEAVCITWFSVEYLLRLGASP--------------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEV 95 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~~~~~~--------------~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~ 95 (306)
+..+.++|.+++++|++|++++|+++. ..++|+|+ |+++|+++++|+.+..........
T Consensus 91 ~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~i~~~~~~~~~------ 163 (823)
T PLN03192 91 KRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQALAYLITGTVK------ 163 (823)
T ss_pred CCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHHHHHHhcCCcc------
Confidence 346789999999999999999998873 13689987 779999999999876443221111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CCC
Q psy694 96 QTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE---HDT 172 (306)
Q Consensus 96 ~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~---~~~ 172 (306)
. ...++++|++|++|+.|+.+.+..+++..+. ......+..+++.++++.+++||++|+..... +.+
T Consensus 164 ------~---~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~-~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~ 233 (823)
T PLN03192 164 ------L---NLSYSLLGLLRFWRLRRVKQLFTRLEKDIRF-SYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKT 233 (823)
T ss_pred ------c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 0 1234455555555555555555444443221 11123345555666667888889888765321 111
Q ss_pred -------------ccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 173 -------------KFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRR 239 (306)
Q Consensus 173 -------------~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~~ 239 (306)
.+..|..|+||+++|+|||||||++|.+..++++++++|++|++++++.+|.+++.+.+..++.
T Consensus 234 Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~--- 310 (823)
T PLN03192 234 WIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRT--- 310 (823)
T ss_pred hHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1123667999999999999999999999999999999999999999999999998887654333
Q ss_pred HHHHHHHHHHHHHHhcCCceechhchhHHHHh
Q psy694 240 EKALKRREAMERAKREGSIVSFHHVNLRDAFA 271 (306)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (306)
++.+++.+...++.+..++....+.+++++++
T Consensus 311 ~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~ 342 (823)
T PLN03192 311 MEFRNSIEAASNFVGRNRLPPRLKDQILAYMC 342 (823)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33333444455555555555555555555543
No 6
>KOG0498|consensus
Probab=99.91 E-value=2.3e-23 Score=198.84 Aligned_cols=233 Identities=15% Similarity=0.176 Sum_probs=174.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhccc--------------chhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhh
Q psy694 29 DNPKLAIVEAVCITWFSVEYLLRLGASP--------------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQE 94 (306)
Q Consensus 29 ~~~~~~i~~~i~~~~F~~e~~l~~~~~~--------------~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~ 94 (306)
-...+.+++.+.+++|++|++++|.++. ..++|+++ |+++|+++++|....+.+.......
T Consensus 115 ~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~t-wFiiDlis~lP~~~i~~~~~~~~~~---- 189 (727)
T KOG0498|consen 115 LAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKT-WFLIDLISTLPFDQIVVLVVIGSTS---- 189 (727)
T ss_pred ccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHhh-hHHHHHHHhcChhhheeeeeecccc----
Confidence 3578999999999999999999998863 13799996 8899999999998877654321100
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccCC---
Q psy694 95 VQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL-GLLMLFLAMGVLIFSSLAYFAEKDEH--- 170 (306)
Q Consensus 95 ~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l-~~~~l~~~~~~~~~a~~~~~~~~~~~--- 170 (306)
.-........++.+.|++|+.|+.+...++.+.......++... ...+++.++..++.||++|+......
T Consensus 190 ------~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~ 263 (727)
T KOG0498|consen 190 ------LALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASC 263 (727)
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 00011135667777777888888887888887776666555553 36677777788888999986532221
Q ss_pred ---------------CCc----cC------ccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHH
Q psy694 171 ---------------DTK----FV------SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPII 225 (306)
Q Consensus 171 ---------------~~~----f~------~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i 225 (306)
..+ |+ .|..|+||++.|+||+|||+.+|.++.+++|++++|++|.+++++++|.+
T Consensus 264 ~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNm 343 (727)
T KOG0498|consen 264 PRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNM 343 (727)
T ss_pred ccccccccccccccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhH
Confidence 111 22 25579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhchhHHHHhhcCc
Q psy694 226 VNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMD 275 (306)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (306)
.+.+++...+. ++.+.+++..++..+.+++....+.+++++.+.+..
T Consensus 344 t~~iqs~tsR~---~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~ 390 (727)
T KOG0498|consen 344 TALLQSLTSRT---EEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWL 390 (727)
T ss_pred HHhHHHHhHHH---HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 99999876644 445555566666666667777677777777776643
No 7
>KOG2302|consensus
Probab=99.87 E-value=1.3e-20 Score=178.98 Aligned_cols=239 Identities=21% Similarity=0.314 Sum_probs=180.2
Q ss_pred CChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhccc---chhhhhccccchhHhHhhhhH
Q psy694 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASP---EKWKFFKGGLNVIDLLAIMPY 77 (306)
Q Consensus 1 ~~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~---~~~~y~~~~~~~~D~~~~ip~ 77 (306)
++|.+|++++++++...-.... + ...+...+++|..+|.+|+.+|+.+.+ ....|+++.||.+|.+.+..+
T Consensus 1132 ~~IfLNcVtialerp~i~~~s~-E-----riFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vs 1205 (1956)
T KOG2302|consen 1132 FFIFLNCVTIALERPAIVEGST-E-----RIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVS 1205 (1956)
T ss_pred hhhhhhhHHHHhcccccccCcc-e-----EEEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHH
Confidence 4689999999999965433322 2 345566679999999999999998876 346999999999999999999
Q ss_pred HHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 78 YISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLI 157 (306)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~ 157 (306)
++.+.......+ ..+++.++|++|++|-+|.+|.+.+..+++.+..++.++.+++.++.++++.++++
T Consensus 1206 viDilvs~asa~------------g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffii 1273 (1956)
T KOG2302|consen 1206 VIDILVSQASAG------------GAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFII 1273 (1956)
T ss_pred HHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 998877544332 45777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccC---------------------------CCCccCccchhhhhhhhhhccccccCC------------cc
Q psy694 158 FSSLAYFAEKDE---------------------------HDTKFVSIPETFWWAGITMTTVGYGDI------------CP 198 (306)
Q Consensus 158 ~a~~~~~~~~~~---------------------------~~~~f~~~~~a~y~~~~t~ttvGygd~------------~p 198 (306)
|++++....++. ...||.+.++|+.-.++-.+-.||-++ .|
T Consensus 1274 FgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqP 1353 (1956)
T KOG2302|consen 1274 FGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQP 1353 (1956)
T ss_pred HHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeec
Confidence 999887544310 023677777888766666666777543 33
Q ss_pred CC---c-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCC
Q psy694 199 TT---P-LGKMIGSVCCVCGVLVIALPIPIIVNNFAEF---YKNQMRREKALKRREAMERAKREGS 257 (306)
Q Consensus 199 ~~---~-~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
.. + .-.++.+++.++.+.+++++++++..++-+- .++++.++.++|+.+..++..++.+
T Consensus 1354 I~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrLrrlekkrR~Aq 1419 (1956)
T KOG2302|consen 1354 ILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRAAQ 1419 (1956)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 2 2245666777788899999999999999863 3333334455555555555554433
No 8
>KOG0501|consensus
Probab=99.83 E-value=2.3e-19 Score=163.16 Aligned_cols=199 Identities=21% Similarity=0.316 Sum_probs=139.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccc-------------chhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhhh
Q psy694 30 NPKLAIVEAVCITWFSVEYLLRLGASP-------------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQ 96 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~~~~~~-------------~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~ 96 (306)
+..+.++|-+++++|++|++++|.+.. .|++|+|+ |+++|+++++|.++.-.......
T Consensus 248 ~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~de-------- 318 (971)
T KOG0501|consen 248 NVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDE-------- 318 (971)
T ss_pred ceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccc--------
Confidence 567889999999999999999998741 36899999 78999999999998655422211
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-------
Q psy694 97 TRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE------- 169 (306)
Q Consensus 97 ~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~------- 169 (306)
... ..+..++..|++|+=|+.|... +.+......+.++++...+.-+..||++|.....+
T Consensus 319 ----gI~---SLFSaLKVVRLLRLGRVaRKLD------~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n 385 (971)
T KOG0501|consen 319 ----GIG---SLFSALKVVRLLRLGRVARKLD------HYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDN 385 (971)
T ss_pred ----cHH---HHHHHHHHHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheeccccc
Confidence 122 2333344444444444433322 23333333334444444444555678887543311
Q ss_pred -------------------------------CCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHH
Q psy694 170 -------------------------------HDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVI 218 (306)
Q Consensus 170 -------------------------------~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~ 218 (306)
+|+.-.-|..|+||++.+|||||||.+.|.+..+++|++.+|++|..++
T Consensus 386 ~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLY 465 (971)
T KOG0501|consen 386 TIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLY 465 (971)
T ss_pred ccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHH
Confidence 1222234678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 219 ALPIPIIVNNFAEFYKNQMRREKALKRREAME 250 (306)
Q Consensus 219 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (306)
+.+.|.++..+++++....+..+.....+...
T Consensus 466 AtIFG~vTTI~QQM~s~T~rYHeMlnnVReFl 497 (971)
T KOG0501|consen 466 ATIFGHVTTIIQQMTSNTNRYHEMLNNVREFL 497 (971)
T ss_pred HHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999998888777766666555443
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.83 E-value=8.3e-20 Score=152.14 Aligned_cols=177 Identities=28% Similarity=0.472 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc-hhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHH
Q psy694 35 IVEAVCITWFSVEYLLRLGASPE-KWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFR 113 (306)
Q Consensus 35 i~~~i~~~~F~~e~~l~~~~~~~-~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr 113 (306)
++|.+++++|.+|+++|+++.+. +.+|++++||++|+++++|..+.......+.... ....++.|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 66 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASA--------------QSLLRIFR 66 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HH--------------CHCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccc--------------cceEEEEE
Confidence 57999999999999999999885 3699999999999999999977665533322100 02456677
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC----------------CCCccCcc
Q psy694 114 IMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE----------------HDTKFVSI 177 (306)
Q Consensus 114 llRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~----------------~~~~f~~~ 177 (306)
++|++|++|+.+..+.++....++....+.+...++++...++.+|++++...++. +.+++.++
T Consensus 67 ~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~ 146 (200)
T PF00520_consen 67 LLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSF 146 (200)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSH
T ss_pred eeccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccc
Confidence 77777777777777778888888888889999999999999999999888544332 23567789
Q ss_pred chhhhhhhhhhccccccCCccC-----CccchhHH-HHHHHHHHHHHHHHHHHH
Q psy694 178 PETFWWAGITMTTVGYGDICPT-----TPLGKMIG-SVCCVCGVLVIALPIPII 225 (306)
Q Consensus 178 ~~a~y~~~~t~ttvGygd~~p~-----~~~~~~~~-~~~il~g~~~~~~~i~~i 225 (306)
..|+||++.++|+.||||..|. ++.+.++. .+.+++++.++|+++|++
T Consensus 147 ~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 147 GESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999999999999999999987 77777777 555556689999999875
No 10
>KOG1420|consensus
Probab=99.78 E-value=9.6e-20 Score=165.39 Aligned_cols=204 Identities=21% Similarity=0.328 Sum_probs=146.8
Q ss_pred ChhhHHHHHHHhccccc-cccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHH
Q psy694 2 FIVLSTVALTLNTIPSL-QHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYIS 80 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~-~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~ 80 (306)
+.++++-+++++.++.. +..+.|++|+. ..-+.+|..|+++|++.+++||+++.+|..||...+.++|++++.|+++.
T Consensus 133 vfilsigsliiyf~das~~~ve~cq~w~~-~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvs 211 (1103)
T KOG1420|consen 133 VFILSIGSLIIYFIDASNPIVETCQNWYK-DFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVS 211 (1103)
T ss_pred HHHHhhhceEEEEEcCCChHHHhhhhhhh-ChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheE
Confidence 34566667777766643 55566888884 45568899999999999999999999999999999999999999999885
Q ss_pred HHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 81 LFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~ 160 (306)
+... +.+-.+|++|.+|+...-.++++.+-++. .++.+..-.+.+++. .++-.|.
T Consensus 212 iyl~-------------------r~wlglrflralrlmtvpdilqylnilkt-----sssirl~qlvsifis-vwltaag 266 (1103)
T KOG1420|consen 212 IYLN-------------------RSWLGLRFLRALRLMTVPDILQYLNILKT-----SSSIRLVQLVSIFIS-VWLTAAG 266 (1103)
T ss_pred EEec-------------------cchHHHHHHHHHHhccHHHHHHHHHHHhc-----cchhhHHHHHHHHHH-HHHhhcc
Confidence 5431 22345666666666666555555443332 222222222222222 2222344
Q ss_pred HHhhhcccCC-CCcc-----CccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 161 LAYFAEKDEH-DTKF-----VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 161 ~~~~~~~~~~-~~~f-----~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
+.+++|+..+ .++| -+|.++.|+.++||+||||||++..+..||.|.++++++|.++++..+.-|++.+-.
T Consensus 267 ~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielign 343 (1103)
T KOG1420|consen 267 FIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGN 343 (1103)
T ss_pred eeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcc
Confidence 5566665433 2333 368899999999999999999999999999999999999999999999988876654
No 11
>KOG2301|consensus
Probab=99.71 E-value=9.3e-17 Score=164.79 Aligned_cols=215 Identities=21% Similarity=0.329 Sum_probs=174.8
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
+|.+|.+.+++++++..+... ..+..++.++..+|++|+++|+++.+-+ .||++.||++|+++++.+++..
T Consensus 1166 li~ln~i~l~~~~~~qs~~~~--------~~l~~in~vft~~Ft~E~vLKiiA~~~~-~yf~~~WN~FDfvvvIlSIv~~ 1236 (1592)
T KOG2301|consen 1166 LIFLNTIIMMVETYDQSDTYT--------AILTILNAVFIVLFTIECILKVIALRFR-GYFTSAWNVFDFVVTILSIVGI 1236 (1592)
T ss_pred HHHHHHHHHHHhhccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhh-HhccccchheEeeeeeHhHHHH
Confidence 578899999999988776664 6899999999999999999999986644 9999999999999999998887
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~ 161 (306)
+....... ........++.|+.|+.|++|+.+...+++.+..++..|.+++..+++++++++++||.+
T Consensus 1237 ~ls~~~~~------------~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~ 1304 (1592)
T KOG2301|consen 1237 VLSEAVEK------------YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAII 1304 (1592)
T ss_pred HHHHHHHh------------hccchhhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 76544321 001125689999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcc------cCCCCccCccchhhhhhhhhhccccccC-----------Ccc--CC---ccc------hhHHHHHHHH
Q psy694 162 AYFAEK------DEHDTKFVSIPETFWWAGITMTTVGYGD-----------ICP--TT---PLG------KMIGSVCCVC 213 (306)
Q Consensus 162 ~~~~~~------~~~~~~f~~~~~a~y~~~~t~ttvGygd-----------~~p--~~---~~~------~~~~~~~il~ 213 (306)
|+...+ -++..||.++++|+--.+...|.-||.| ..| .+ +|| .+|+.++++.
T Consensus 1305 Gmq~Fg~Vkl~~i~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs 1384 (1592)
T KOG2301|consen 1305 GMQLFGYVKLGGINDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILIS 1384 (1592)
T ss_pred HHHHhhheeccccCCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHH
Confidence 985432 2356789999999876666666666643 222 11 344 4677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 214 GVLVIALPIPIIVNNFAEFYKNQM 237 (306)
Q Consensus 214 g~~~~~~~i~~i~~~~~~~~~~~~ 237 (306)
.++++|+++|+|.++|+..++++.
T Consensus 1385 ~~IvvNLfVAVImeNFs~~t~~~s 1408 (1592)
T KOG2301|consen 1385 SYIVVNLFVAVILENFSYATEDSS 1408 (1592)
T ss_pred HHHHHHHHHHHHHhhhhhhccccc
Confidence 899999999999999998777665
No 12
>KOG2301|consensus
Probab=99.71 E-value=6.8e-17 Score=165.78 Aligned_cols=202 Identities=25% Similarity=0.339 Sum_probs=159.2
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
++++|++.++++++++.+.. +..+.+.+.+|..+|.+|+.+|+++-+.+ .|++++||++|.++++ +.+
T Consensus 452 ~i~lnt~~~a~eh~~~~~~~--------~~~l~~~~~vF~~lF~~Em~~ki~al~~~-~yF~~~~n~fD~~iv~---l~~ 519 (1592)
T KOG2301|consen 452 CIALNTLFMAMEHYEMTKAR--------NYLLYLGNVVFTGLFTVEMILKIYALGPR-NYFRRGWNIFDLIIVL---LSL 519 (1592)
T ss_pred HHhhcccEEEEEEeCCcHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHcCcH-HHHhhhcchheEEEEe---hhh
Confidence 45667777777776655555 48899999999999999999999996665 9999999999999988 222
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~ 161 (306)
....... ...++++|.+|++|++|+.++++.++++...+..+.+.+.++.+++++++++||.+
T Consensus 520 ~~~~~~~-----------------~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~ 582 (1592)
T KOG2301|consen 520 LELLLKN-----------------VYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAI 582 (1592)
T ss_pred HHhcccc-----------------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 2222111 25789999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCC-CC-----ccCccchhhhhhhhhhccccccCC-------ccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 162 AYFAEKDEH-DT-----KFVSIPETFWWAGITMTTVGYGDI-------CPTTPLGKMIGSVCCVCGVLVIALPIPIIVNN 228 (306)
Q Consensus 162 ~~~~~~~~~-~~-----~f~~~~~a~y~~~~t~ttvGygd~-------~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~ 228 (306)
++...++.. +. ++.+++.|+-+.+. +|+-+|-|. .++..+..+|.+.+.++-.+++|+++|.+.++
T Consensus 583 gmqlFg~~~n~~~~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n 661 (1592)
T KOG2301|consen 583 GMQLFGGVYNLHCDIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDN 661 (1592)
T ss_pred hHHhhCcccCCCCCCccchhhCHHHHHHHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 986654432 22 67889999998888 777777552 22334444455555545589999999999999
Q ss_pred HHHHH
Q psy694 229 FAEFY 233 (306)
Q Consensus 229 ~~~~~ 233 (306)
++...
T Consensus 662 ~~~~e 666 (1592)
T KOG2301|consen 662 FESDE 666 (1592)
T ss_pred chhhh
Confidence 98644
No 13
>KOG0500|consensus
Probab=99.68 E-value=1.7e-15 Score=136.12 Aligned_cols=215 Identities=15% Similarity=0.206 Sum_probs=153.9
Q ss_pred hhhHHHHHHH-hccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhccc------------chhhhhccccchh
Q psy694 3 IVLSTVALTL-NTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASP------------EKWKFFKGGLNVI 69 (306)
Q Consensus 3 i~~~~i~~~l-~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~------------~~~~y~~~~~~~~ 69 (306)
++-|++.++. ..++..+..+ ...|..+|+.++++|++|++++..... -+++|+.+..+.+
T Consensus 7 vLYN~~~li~r~~F~di~~~y-------~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~l 79 (536)
T KOG0500|consen 7 VLYNMIVLIVRAAFDDIQSSY-------LENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKL 79 (536)
T ss_pred hHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhh
Confidence 3456777776 5666666665 578889999999999999999987642 2368999999999
Q ss_pred HhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy694 70 DLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLML 149 (306)
Q Consensus 70 D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l 149 (306)
|+++++|.++..+..++.+ ..|+.|++|+.|+...+.+.+. ++....+..+..+..
T Consensus 80 D~l~liP~D~l~~~~~~~~----------------------~~r~nRllk~yRl~~F~~rTet--rT~~Pn~fri~~lv~ 135 (536)
T KOG0500|consen 80 DVLSLIPLDLLLFKDGSAS----------------------LERLNRLLKIYRLFEFFDRTET--RTTYPNAFRISKLVH 135 (536)
T ss_pred hhhhhcchhHHhhcCCcch----------------------HHHHHHHHHHHHHHHHHHHhcc--ccCCchHHHHHHHHH
Confidence 9999999999877655432 2334444445554444433222 555666667777888
Q ss_pred HHHHHHHHHHHHHhhhcccC------------CCCccC---------ccchhhhhhhhhhccccccCCccCCccchhHHH
Q psy694 150 FLAMGVLIFSSLAYFAEKDE------------HDTKFV---------SIPETFWWAGITMTTVGYGDICPTTPLGKMIGS 208 (306)
Q Consensus 150 ~~~~~~~~~a~~~~~~~~~~------------~~~~f~---------~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~ 208 (306)
.++++++..||+.|...... .++.|. .|.-|+||+..|+||+| --..|.+..+-.|.+
T Consensus 136 ~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I 214 (536)
T KOG0500|consen 136 YCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVI 214 (536)
T ss_pred HHHHHHHHhhHHHHhhhHhcCccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHH
Confidence 88888899999888654321 111222 25679999999999998 356888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 209 VCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAM 249 (306)
Q Consensus 209 ~~il~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (306)
+=.++|+.+||.++|.+.+.+++....+.+-+...+-.+..
T Consensus 215 ~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~Y 255 (536)
T KOG0500|consen 215 VDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQY 255 (536)
T ss_pred HHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877555444444444433333
No 14
>KOG2302|consensus
Probab=99.60 E-value=6.2e-15 Score=140.93 Aligned_cols=213 Identities=22% Similarity=0.315 Sum_probs=158.7
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
+|-+|.+++.++.+......+ ..+.+-++.+.++|+.|.++|+++++.+ +|+++.||-+|+.+++.++..+
T Consensus 1450 ii~LnvVtms~ehyqqp~sld--------ealkycny~ft~vfV~EaV~klvafG~r-rFfkdrwnqldlaivlls~mgi 1520 (1956)
T KOG2302|consen 1450 IICLNVVTMSEEHYQQPTSLD--------EALKYCNYRFTAVFVLEAVLKLVAFGER-RFFKDRWNQLDLAIVLLSVMGI 1520 (1956)
T ss_pred HHHHHHHHHHHHHHhCcccHH--------HHhhhcceeeeehhHHHHHHHHHHHhHH-HHHhhhhhhhhHHHHHHHHhcc
Confidence 567899999999877666554 7899999999999999999999999887 9999999999999998888776
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~ 161 (306)
...+...+ ..+..+..++|+.|.+|+.|.+|++++..+++.+..++.+..+.+.++.++..+++++||.+
T Consensus 1521 tleeie~n----------aalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiyaal 1590 (1956)
T KOG2302|consen 1521 TLEEIEIN----------AALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAAL 1590 (1956)
T ss_pred cHhheeec----------ccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Confidence 55433222 12233346788888888888888888899999999999999999999999999999999999
Q ss_pred Hhhhccc-----CC-------CCccCccchhhhhhhhhhccccccCCcc----CC-------------ccc-hhHHHHHH
Q psy694 162 AYFAEKD-----EH-------DTKFVSIPETFWWAGITMTTVGYGDICP----TT-------------PLG-KMIGSVCC 211 (306)
Q Consensus 162 ~~~~~~~-----~~-------~~~f~~~~~a~y~~~~t~ttvGygd~~p----~~-------------~~~-~~~~~~~i 211 (306)
+.-..+. ++ ..+|.+|+.|| .|+..|.-||... .| ..+ .+|+.++.
T Consensus 1591 gvelfg~lec~e~npceglsrhatf~nfgmaf----ltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsfvl 1666 (1956)
T KOG2302|consen 1591 GVELFGKLECNEENPCEGLSRHATFENFGMAF----LTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSFVL 1666 (1956)
T ss_pred HHHHhcccccCCCCCccccccccchhhhchHh----hhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhhhh
Confidence 9854332 11 24666777776 5555555555322 11 112 23444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 212 VCGVLVIALPIPIIVNNFAEFYKNQM 237 (306)
Q Consensus 212 l~g~~~~~~~i~~i~~~~~~~~~~~~ 237 (306)
..-++++|.+++++...+++..++.+
T Consensus 1667 taqfvlvnvvvavlmkhleesnkea~ 1692 (1956)
T KOG2302|consen 1667 TAQFVLVNVVVAVLMKHLEESNKEAQ 1692 (1956)
T ss_pred hhhhHHHHHHHHHHHHHHHhhchhhh
Confidence 44488899988888877776554443
No 15
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.45 E-value=1.4e-11 Score=122.32 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhc
Q psy694 110 QVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMT 189 (306)
Q Consensus 110 ~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~t 189 (306)
.++-+++.+|++|+++..+++..+..++..+.+.+..++++++++++.||.++++..+... ..|.++..|++-.+..++
T Consensus 1296 GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v-e~FSTf~sSL~TLFqMLL 1374 (1634)
T PLN03223 1296 GINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS-VHFSDMTDSINSLFENLL 1374 (1634)
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhhcCHHHHHHHHHHHHH
Confidence 3455677788888888899999999999999999999999999999999999998887654 478999999987777665
Q ss_pred cccc---cCCccC----Cccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 190 TVGY---GDICPT----TPLGKM-IGSVCCVCGVLVIALPIPIIVNNFAEFYKN 235 (306)
Q Consensus 190 tvGy---gd~~p~----~~~~~~-~~~~~il~g~~~~~~~i~~i~~~~~~~~~~ 235 (306)
.... .|..+. ...|.+ |..+.+++.++++|+++++|.+.+++..++
T Consensus 1375 GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1375 GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3211 011121 233444 445555566899999999999999975443
No 16
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.44 E-value=7.9e-12 Score=114.33 Aligned_cols=83 Identities=23% Similarity=0.431 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHhh-hcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHH
Q psy694 147 LMLFLAMGVLIFSSLAYF-AEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPII 225 (306)
Q Consensus 147 ~~l~~~~~~~~~a~~~~~-~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i 225 (306)
..+..+..+..++.++++ .+++.+ +.+.++.+|+||+++|+||+||||+.|.++.+|++++++++.|++++++.++.+
T Consensus 139 ~~~~~~~~l~~~~~~g~~~~~~~f~-~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i 217 (393)
T PRK10537 139 FAVISITSLLFYSTFGALYLGDGFS-PPIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAI 217 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccC-cCCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556667777654 443322 346789999999999999999999999999999999999999999999888877
Q ss_pred HHHHH
Q psy694 226 VNNFA 230 (306)
Q Consensus 226 ~~~~~ 230 (306)
...+.
T Consensus 218 ~~p~i 222 (393)
T PRK10537 218 FGPVI 222 (393)
T ss_pred HHHHH
Confidence 76544
No 17
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.44 E-value=5.5e-13 Score=94.52 Aligned_cols=76 Identities=26% Similarity=0.582 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 152 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
++.++.+|++.+...+. ..-.++.+|+||+++|+||+||||+.|.++.+|++++++++.|+.++++.++.+.+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~---~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 3 LLLVLAFGAIFFYISEG---SEKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHTTS---SSTTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHHHHh---cccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556655555222 22478999999999999999999999999999999999999999999999999887665
No 18
>KOG0499|consensus
Probab=99.26 E-value=3.2e-10 Score=104.36 Aligned_cols=178 Identities=17% Similarity=0.212 Sum_probs=122.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHH-----Hhccc--------chhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhhh
Q psy694 30 NPKLAIVEAVCITWFSVEYLLR-----LGASP--------EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQ 96 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~-----~~~~~--------~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~ 96 (306)
.+-|.+.|+++++++++|++.= |.-.| .+++|+++.-+-+|+++++|+.+..+..+.+.
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p-------- 331 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNP-------- 331 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccch--------
Confidence 4678899999999999999752 22222 24799999889999999999998777654432
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC------
Q psy694 97 TRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEH------ 170 (306)
Q Consensus 97 ~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~------ 170 (306)
+.|+.|.++.--.....+.+..+... .-..++....-.++..+++-||+.|+...-.+
T Consensus 332 --------------~wR~~R~lK~~sF~e~~~~Le~i~s~--~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rW 395 (815)
T KOG0499|consen 332 --------------MWRANRMLKYTSFFEFNHHLESIMSK--AYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRW 395 (815)
T ss_pred --------------hhhhhhHHHHHHHHHHHHHHHHHhcc--hhhhhhHHHHHHHHHHHhhhHHHHHHHHhhccccccee
Confidence 22333333333332222333322211 11223444555666677888888886543211
Q ss_pred --CCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 171 --DTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEF 232 (306)
Q Consensus 171 --~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~ 232 (306)
+.....|..++||+.-|++|+| |...|.+..+.+|..+--+.|+.+|++.+|.+-+.+...
T Consensus 396 Vydg~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aA 458 (815)
T KOG0499|consen 396 VYDGEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAA 458 (815)
T ss_pred EEcCCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1122468899999999999999 889999998888888888899999999999987777753
No 19
>KOG3599|consensus
Probab=99.02 E-value=4.1e-08 Score=96.65 Aligned_cols=194 Identities=16% Similarity=0.301 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHHHHh-----------------hcCCCcchhhhhhh
Q psy694 36 VEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLL-----------------ESNSTSNEQEVQTR 98 (306)
Q Consensus 36 ~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~~~~-----------------~~~~~~~~~~~~~~ 98 (306)
+=+++.++|+++-+.++.- ...++|+++.||++|+.++...++.+... ..+...+.+..+.+
T Consensus 471 vf~l~~~yf~~~e~~~i~~-~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~ 549 (798)
T KOG3599|consen 471 VFLLFVLYFAVAEGLKIWI-HRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQW 549 (798)
T ss_pred HHHHHHHHHHHHHHHHHHH-hhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHH
Confidence 3344445566666666663 22349999999999999987666655332 22222344444454
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccc
Q psy694 99 TDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIP 178 (306)
Q Consensus 99 ~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~ 178 (306)
+..+. .+..++-++-.+|+.|+.+..+.++.+.+++..+.+.+..+.+..+++++.||.+++.+.+.... +|.++.
T Consensus 550 ~~~~~---~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~-~f~~f~ 625 (798)
T KOG3599|consen 550 NIAAR---NLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVS-DFRTFV 625 (798)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-ChHHHH
Confidence 44443 23445556667888888888999999999999999999999999999999999999998876543 466666
Q ss_pred hhhhhhhhhhccccccCCccCCc--cchh----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 179 ETFWWAGITMTTVGYGDICPTTP--LGKM----IG-SVCCVCGVLVIALPIPIIVNNFAEFYKNQMR 238 (306)
Q Consensus 179 ~a~y~~~~t~ttvGygd~~p~~~--~~~~----~~-~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~ 238 (306)
+|+ .|+...--||..|.+. .+++ +. ..++++..+++|++++.|.+.+++...+..+
T Consensus 626 ~s~----~t~~~~~~G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 626 ASI----VTLLRYILGDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHH----HHHHHHHhccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 665 4444333357666542 2222 22 3333344679999999999888875544333
No 20
>KOG4404|consensus
Probab=98.96 E-value=4.4e-09 Score=90.61 Aligned_cols=93 Identities=22% Similarity=0.339 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCC--------ccchhHHHHHH
Q psy694 140 SYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT--------PLGKMIGSVCC 211 (306)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~--------~~~~~~~~~~i 211 (306)
+...+..++...+.+++..+...|...++ |+|+||+|++++|+||+|+||.++.. +.-+.+..+++
T Consensus 156 S~~~l~~i~~~~~~~~i~~gaa~fs~~E~------Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fI 229 (350)
T KOG4404|consen 156 SVYNLVLILFTACILLICCGAAMFSSVEG------WSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFI 229 (350)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHhhcccC------cchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHH
Confidence 34445555555555555555555544433 99999999999999999999988743 33467888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 212 VCGVLVIALPIPIIVNNFAEFYKNQMR 238 (306)
Q Consensus 212 l~g~~~~~~~i~~i~~~~~~~~~~~~~ 238 (306)
++|+++++-+++.++-.+.....+..+
T Consensus 230 L~Gl~vi~a~~NllvLrf~t~~~~~~r 256 (350)
T KOG4404|consen 230 LLGLCVIYALLNLLVLRFMTMNAEDER 256 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999988888887777765544433
No 21
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.96 E-value=9.5e-08 Score=89.32 Aligned_cols=186 Identities=20% Similarity=0.267 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHHHHh----------------hcCCCcchhhhhhhhhhhh
Q psy694 40 CITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLL----------------ESNSTSNEQEVQTRTDQFQ 103 (306)
Q Consensus 40 ~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 103 (306)
+.++|+..-+.++... +++|+++.||++|++.++.....+... ......+.+..+.+.....
T Consensus 220 ~~l~~~~~ei~~i~~~--g~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~ 297 (425)
T PF08016_consen 220 FVLYFLYREIKKIRRE--GRAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQWDQLYR 297 (425)
T ss_pred HHHHHHHHHHHHHHHh--hhHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHH
Confidence 3344444444454433 369999999999999987665544221 1111122222232222222
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhh
Q psy694 104 DVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWW 183 (306)
Q Consensus 104 ~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~ 183 (306)
....++-++-.+|++|..+..+++..+.+++..+.+.+...++.++++++.||.+++...+... ..|.++..|+..
T Consensus 298 ---~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~-~~f~s~~~s~~t 373 (425)
T PF08016_consen 298 ---YLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS-EDFSSFSSSLVT 373 (425)
T ss_pred ---HHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-cccCCHHHHHHH
Confidence 2233344445667777777788899999999999999999999999999999999998887543 358888888755
Q ss_pred hhhhhcc-ccccCCc-cCCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy694 184 AGITMTT-VGYGDIC-PTTPLGKMIGSVCCV-CGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 184 ~~~t~tt-vGygd~~-p~~~~~~~~~~~~il-~g~~~~~~~i~~i~~~~~~ 231 (306)
.+..+.. .+|+|+. +....+.++...+++ +.++++|++++++.+.+++
T Consensus 374 l~~~l~g~~~~~~~~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 374 LFRMLLGDFDYDELYQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred HHHHhcCCCchhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5444332 3344442 233444555544444 4467889999998877653
No 22
>KOG3684|consensus
Probab=98.88 E-value=1.2e-07 Score=85.38 Aligned_cols=57 Identities=25% Similarity=0.522 Sum_probs=53.0
Q ss_pred CccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
.+|.+++|...+|+.++||||++|.|-+||..+++..++|.++-+++++++...++-
T Consensus 286 ~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeL 342 (489)
T KOG3684|consen 286 INYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLEL 342 (489)
T ss_pred HHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999877763
No 23
>KOG1418|consensus
Probab=98.54 E-value=1.9e-06 Score=80.28 Aligned_cols=68 Identities=25% Similarity=0.438 Sum_probs=60.3
Q ss_pred CCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 171 DTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMR 238 (306)
Q Consensus 171 ~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~ 238 (306)
+..-+++.+|+||+++++||+|||++.|.|..||++++++.++|+.++.+.++.+...+.+...+-..
T Consensus 110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~ 177 (433)
T KOG1418|consen 110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYR 177 (433)
T ss_pred CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457999999999999999999999999999999999999999999999999998888876655443
No 24
>KOG3193|consensus
Probab=98.51 E-value=9e-07 Score=81.42 Aligned_cols=166 Identities=18% Similarity=0.224 Sum_probs=92.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhccc--chhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHH
Q psy694 30 NPKLAIVEAVCITWFSVEYLLRLGASP--EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRR 107 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~~~~~~--~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (306)
...+|+++..+..+-+..-++-++... .-.+-+...-++++++...|.++.++.+..... .-+-|+..+
T Consensus 89 ~~~iw~lq~~~a~is~~~ti~~~yl~ysgsvvrllinihfllelitsfpfii~ifipsltyl--------yvpvflncw- 159 (1087)
T KOG3193|consen 89 DFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFIISIFIPSLTYL--------YVPVFLNCW- 159 (1087)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhHHHHHHHhhcccceeeeecccccee--------echhhhhhh-
Confidence 456788888888888877777776643 222344445568899999999887766433222 000011100
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HHhhhcccCCCCccCccchhhh
Q psy694 108 VVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLL--MLFLAMGVLIFSS---LAYFAEKDEHDTKFVSIPETFW 182 (306)
Q Consensus 108 ~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~--~l~~~~~~~~~a~---~~~~~~~~~~~~~f~~~~~a~y 182 (306)
..-. .+. ..++++.+....+...+..- ++...+.+++|.. +..+ .+..+ .--+.+.++|
T Consensus 160 -----lakg-----alq---ammndl~r~~~~s~sal~~ql~ll~s~l~clift~~c~i~h~-qra~~--k~i~lf~s~y 223 (1087)
T KOG3193|consen 160 -----LAKG-----ALQ---AMMNDLNRKSFISSSALFRQLLLLFSVLACLIFTGMCSIEHL-QRARG--KRIDLFTSFY 223 (1087)
T ss_pred -----hhhh-----HHH---HhhhhHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHccC--ceeeeeeeEE
Confidence 0000 001 11233334444444443322 2222233333322 2222 11111 1246679999
Q ss_pred hhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHH
Q psy694 183 WAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIAL 220 (306)
Q Consensus 183 ~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~ 220 (306)
++++|++||||||.+|.-|.+.++.++++.++.+++.-
T Consensus 224 ~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~ 261 (1087)
T KOG3193|consen 224 FVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPK 261 (1087)
T ss_pred EEEEEEeeccccccccccchhhHHHHHHHHHHHhccHH
Confidence 99999999999999999999998887777666555544
No 25
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.47 E-value=2.9e-05 Score=77.90 Aligned_cols=212 Identities=12% Similarity=0.073 Sum_probs=109.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHHHHhhcC---CCcc--hhhh-hhhhhhhhh
Q psy694 31 PKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESN---STSN--EQEV-QTRTDQFQD 104 (306)
Q Consensus 31 ~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~---~~~~--~~~~-~~~~~~~~~ 104 (306)
.+...+-......+.++-...++..+- ..|+++.||++|++........+...... ...+ .... ......-.-
T Consensus 389 ~~~e~~~~~~~~~~~~~e~~~~~~~g~-~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (743)
T TIGR00870 389 TPLEMLIVTWVDGLRLGEEKLIWLGGI-FEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLI 467 (743)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhH
Confidence 344445555555666666666665333 48999999999995543332222110000 0000 0000 000000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCC-------------
Q psy694 105 VRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYK-ELGLLMLFLAMGVLIFSSLAYFAEKDEH------------- 170 (306)
Q Consensus 105 ~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~-~l~~~~l~~~~~~~~~a~~~~~~~~~~~------------- 170 (306)
...++.+.-++..+|++.+.+..+.+--+..++.+... .+..++++++++++.||+..+.......
T Consensus 468 ~~~l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~ 547 (743)
T TIGR00870 468 EEALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHAR 547 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 01233344444444444444444444445566677777 8888888888888888887765432111
Q ss_pred -----CCccCccchhhhhhhhhhccccccCCcc-----CCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 171 -----DTKFVSIPETFWWAGITMTTVGYGDICP-----TTPLGKMIGSVCCV-CGVLVIALPIPIIVNNFAEFYKNQMRR 239 (306)
Q Consensus 171 -----~~~f~~~~~a~y~~~~t~ttvGygd~~p-----~~~~~~~~~~~~il-~g~~~~~~~i~~i~~~~~~~~~~~~~~ 239 (306)
...|.++..++.-.+-+ +.|.+|... ..+.+.++..++++ ..++++|+++|++.+.+++..++...+
T Consensus 548 ~~~~~~~~f~~~~~s~~~lf~~--~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~ 625 (743)
T TIGR00870 548 SCEKQGNAYSTLFETSQELFWA--IIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEE 625 (743)
T ss_pred ccccccccccCHHHHHHHHHHH--HcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence 12344444444322222 345555421 12344444444444 457899999999999999876665554
Q ss_pred HHHHHH
Q psy694 240 EKALKR 245 (306)
Q Consensus 240 ~~~~~~ 245 (306)
.+.++.
T Consensus 626 wk~~r~ 631 (743)
T TIGR00870 626 WKFQRA 631 (743)
T ss_pred HHHHHH
Confidence 444443
No 26
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.25 E-value=2.6e-06 Score=76.41 Aligned_cols=86 Identities=24% Similarity=0.424 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc---cC---------CC--CccCccchhhhhhhhhhccccccC--CccCCccchhHHHH
Q psy694 146 LLMLFLAMGVLIFSSLAYFAEK---DE---------HD--TKFVSIPETFWWAGITMTTVGYGD--ICPTTPLGKMIGSV 209 (306)
Q Consensus 146 ~~~l~~~~~~~~~a~~~~~~~~---~~---------~~--~~f~~~~~a~y~~~~t~ttvGygd--~~p~~~~~~~~~~~ 209 (306)
.+++..++..++||+++|.... +- .+ .+..+|.+||+|++.|.||+|||. +.|..+.+.++..+
T Consensus 40 ~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~ 119 (336)
T PF01007_consen 40 LFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTI 119 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCceecccchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHH
Confidence 3444555667777777764321 10 01 234688999999999999999998 56677777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy694 210 CCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 210 ~il~g~~~~~~~i~~i~~~~~~ 231 (306)
-.++|+++.++.+|.+.+.+++
T Consensus 120 q~~~g~l~~a~~~Glvfar~sr 141 (336)
T PF01007_consen 120 QSLVGLLLDAFMTGLVFARFSR 141 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999888873
No 27
>KOG4404|consensus
Probab=97.71 E-value=0.00015 Score=63.16 Aligned_cols=57 Identities=23% Similarity=0.399 Sum_probs=46.1
Q ss_pred CccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
+.|.-||||+.+.+||+|||-.+|.|..||+|++++.++|+.+--+....+.+.+..
T Consensus 79 WkF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt 135 (350)
T KOG4404|consen 79 WKFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNT 135 (350)
T ss_pred cccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999998865444444445444443
No 28
>KOG3609|consensus
Probab=97.49 E-value=0.0086 Score=58.70 Aligned_cols=214 Identities=14% Similarity=0.192 Sum_probs=107.7
Q ss_pred chhHHHHHHHHHH---HHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHHHHh----hcCCCcc---hhhh-hhhh
Q psy694 31 PKLAIVEAVCITW---FSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLL----ESNSTSN---EQEV-QTRT 99 (306)
Q Consensus 31 ~~~~i~~~i~~~~---F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~~~~----~~~~~~~---~~~~-~~~~ 99 (306)
.....+|+.+..+ ++.+=+-.++..|. ..|++.+||++|+.........+..- ......+ -+++ =-..
T Consensus 381 ~~p~~vE~li~~wV~G~iw~E~k~lw~~G~-~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~ 459 (822)
T KOG3609|consen 381 VTPQALEILIYLWVMGLIWEEIKELWRVGR-DGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSF 459 (822)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCC
Confidence 4455555554433 33444455566444 49999999999998876555444221 1111100 0000 0000
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcccCCC---
Q psy694 100 DQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAY-----FAEKDEHD--- 171 (306)
Q Consensus 100 ~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~-----~~~~~~~~--- 171 (306)
.+-.-.-..+.+--++-.+|++.+....+.+--+.-++.+.+..+..++++..++++.|++... +.......
T Consensus 460 dp~ll~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~ 539 (822)
T KOG3609|consen 460 DPSLLAEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQ 539 (822)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccc
Confidence 0000001223333333344444444444333333356667777788887777777777766432 22211111
Q ss_pred ------CccCccc---hhhhhhhhhhccccccCCccC----CccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy694 172 ------TKFVSIP---ETFWWAGITMTTVGYGDICPT----TPLGKMIGSVCCVCG-VLVIALPIPIIVNNFAEFYKNQM 237 (306)
Q Consensus 172 ------~~f~~~~---~a~y~~~~t~ttvGygd~~p~----~~~~~~~~~~~il~g-~~~~~~~i~~i~~~~~~~~~~~~ 237 (306)
+.|.+.. .+++|+.-.++-++--++.-. ...|.+....+.++. ++++|+.+|++.+.+++......
T Consensus 540 ~~~~~~~~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~AD 619 (822)
T KOG3609|consen 540 DYTKTTDSFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDAD 619 (822)
T ss_pred cccccccccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcch
Confidence 1244443 456788765544332121111 134444444444444 67999999999999998666555
Q ss_pred HHHHHHHH
Q psy694 238 RREKALKR 245 (306)
Q Consensus 238 ~~~~~~~~ 245 (306)
.+.+.-+.
T Consensus 620 vEWKFARA 627 (822)
T KOG3609|consen 620 VEWKFARA 627 (822)
T ss_pred hHHHHHHH
Confidence 55544443
No 29
>KOG1418|consensus
Probab=97.49 E-value=7.8e-05 Score=69.35 Aligned_cols=56 Identities=34% Similarity=0.554 Sum_probs=45.2
Q ss_pred CccchhhhhhhhhhccccccCCccCCccch--------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPTTPLGK--------MIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~~~~~~--------~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
++|.+|+||+++++||+||||++|.+..++ .....++++|...++...........
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 304 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVLLGPDRRLE 304 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHhhccccchh
Confidence 789999999999999999999999998765 57778888888888876643333333
No 30
>KOG3676|consensus
Probab=97.06 E-value=0.096 Score=51.37 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-----------ccCccchhhhhhhhhh--ccccccCCccCCc-----c
Q psy694 141 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDT-----------KFVSIPETFWWAGITM--TTVGYGDICPTTP-----L 202 (306)
Q Consensus 141 ~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~-----------~f~~~~~a~y~~~~t~--ttvGygd~~p~~~-----~ 202 (306)
...+..++++.+++++-||...|....+..++ .-.+..+++...+.++ +|+|+||...... .
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~ 619 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVL 619 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHH
Confidence 46778888899999999998888665433221 1123346665555665 5899999644332 2
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 203 GK-MIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALK 244 (306)
Q Consensus 203 ~~-~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 244 (306)
++ ++..+.+++.+.++||+||...+...+..++..+..+.+.
T Consensus 620 ~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~ 662 (782)
T KOG3676|consen 620 FKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQW 662 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHH
Confidence 34 3444445566889999999999888876666545444443
No 31
>KOG3614|consensus
Probab=97.03 E-value=0.034 Score=57.26 Aligned_cols=203 Identities=17% Similarity=0.148 Sum_probs=103.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcccch------hhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhh
Q psy694 31 PKLAIVEAVCITWFSVEYLLRLGASPEK------WKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQD 104 (306)
Q Consensus 31 ~~~~i~~~i~~~~F~~e~~l~~~~~~~~------~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (306)
.++..+=++...-+.+|-+-+......+ +-|+-++||..|.+++..+.+.+..-..... + ...++
T Consensus 822 s~~Ew~~~~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~---~------~~~GR 892 (1381)
T KOG3614|consen 822 SMWEWILFAWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPID---S------IYSGR 892 (1381)
T ss_pred CccchhHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCcc---c------eecce
Confidence 3444444555556678888887765431 4589999999999999988887755222201 0 01111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhh
Q psy694 105 VRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWA 184 (306)
Q Consensus 105 ~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~ 184 (306)
..-.+ --++=-+|++......+.+---...+.+.+..+..+++++++.++.||+.-.-.-..+.+.++.-+-+.+||.
T Consensus 893 vIl~~--d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~y~P 970 (1381)
T KOG3614|consen 893 VILCF--DFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIFYWP 970 (1381)
T ss_pred eeeee--hHHHHHHHHhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHHH
Confidence 11111 1111223333333333333333334555566777778888888888877554333322333333333555554
Q ss_pred hhhhccccc-------cC-------------------CccCCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 185 GITMTTVGY-------GD-------------------ICPTTPLGKMIGSVCCV-CGVLVIALPIPIIVNNFAEFYKNQM 237 (306)
Q Consensus 185 ~~t~ttvGy-------gd-------------------~~p~~~~~~~~~~~~il-~g~~~~~~~i~~i~~~~~~~~~~~~ 237 (306)
--++.+--| |+ ..|.++..-++.+++++ .-+.++|+.+|+....+.+..+...
T Consensus 971 YlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd 1050 (1381)
T KOG3614|consen 971 YLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSD 1050 (1381)
T ss_pred HHHHhccccHhhhhhhcccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444433222 10 11222222333333333 3367888877777666666555444
Q ss_pred HHHHHHH
Q psy694 238 RREKALK 244 (306)
Q Consensus 238 ~~~~~~~ 244 (306)
+-.+.++
T Consensus 1051 ~iWkFQR 1057 (1381)
T KOG3614|consen 1051 QIWKFQR 1057 (1381)
T ss_pred HHHHHHH
Confidence 4344333
No 32
>KOG3827|consensus
Probab=96.76 E-value=0.0079 Score=53.86 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-------CCC-------CccCccchhhhhhhhhhccccccCCccCCccc--hhHHHHH
Q psy694 147 LMLFLAMGVLIFSSLAYFAEKD-------EHD-------TKFVSIPETFWWAGITMTTVGYGDICPTTPLG--KMIGSVC 210 (306)
Q Consensus 147 ~~l~~~~~~~~~a~~~~~~~~~-------~~~-------~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~--~~~~~~~ 210 (306)
+.+-.++-+++||+++|..... ..+ .+..++..||.|++-|=||+|||--+++..|- .+..++-
T Consensus 69 F~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q 148 (400)
T KOG3827|consen 69 FSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQ 148 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHHHHHHH
Confidence 3444555677788888854321 111 13457889999999999999999877776543 4555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy694 211 CVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 211 il~g~~~~~~~i~~i~~~~~~ 231 (306)
++.|+++=+..+|.+.+.+++
T Consensus 149 ~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 149 SILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888888766663
No 33
>KOG0510|consensus
Probab=95.90 E-value=0.47 Score=46.88 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=88.8
Q ss_pred chhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q psy694 57 EKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFT 136 (306)
Q Consensus 57 ~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~ 136 (306)
.|.+|+.+.-|+.|-++....++........ .+..+.+... .+.-++-..+++-+++.++........
T Consensus 587 qk~~Y~~~i~Nimew~iyts~li~v~~~~~~----------~~~~~Q~~la--a~aV~l~W~nllLmi~~~p~~gIfvvM 654 (929)
T KOG0510|consen 587 QKRHYFMDIENIMEWFIYTSALITVYPLFFE----------ITAHLQWVLA--AFAVLLGWMNLLLMIGRFPVFGIFVVM 654 (929)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhheeehhhhh----------hHHHHHHHHH--HHHHHHHHHHHHHHHccCCccceehHH
Confidence 4679999988999887765554432211110 0112222222 222334445555555555554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCc---------------cCCc
Q psy694 137 LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDIC---------------PTTP 201 (306)
Q Consensus 137 ~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~---------------p~~~ 201 (306)
+....+.+.....+..++++.|+...|...+...+ |.+.+-+.--+++.|- |.-|.+ |...
T Consensus 655 ~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~e--Fs~p~ms~l~t~~MMi--Ge~dft~~~~~~~~~~~~l~~~v~s 730 (929)
T KOG0510|consen 655 LEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSSE--FSNPFMSKLETFVMMI--GENDFTKVMFTEEFKRNSLAHPVLS 730 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCC--cCCCcchhhhhHHHhh--cccccccccccchhhcCcccchHHH
Confidence 44455566666666667777777777766654433 5666666655555542 333332 1111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 202 LGKMIGSVCCVCGVLVIALPIPIIVNNFAEF 232 (306)
Q Consensus 202 ~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~ 232 (306)
. ..|..|.++.-++++|+.+|..++=++..
T Consensus 731 ~-~~f~~F~IfmtIvLMNLLiGLAV~DIq~v 760 (929)
T KOG0510|consen 731 F-AIFVLFTIFMTIVLMNLLIGLAVGDIQGV 760 (929)
T ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 1 34566667777889999999887766653
No 34
>KOG3533|consensus
Probab=95.76 E-value=0.11 Score=53.66 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=80.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC---------C-------------------
Q psy694 119 RILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE---------H------------------- 170 (306)
Q Consensus 119 R~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~---------~------------------- 170 (306)
-++.++-+-+++....+++.+.-+.+....++.++++++|+++||.+.+++ +
T Consensus 2397 LLFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~ 2476 (2706)
T KOG3533|consen 2397 LLFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSE 2476 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCccc
Confidence 345566666777777777777778888999999999999999999665432 0
Q ss_pred ---CCccC-----------------ccchhhhhhhhhhcc------ccccCC--ccCCccc-----hhHHHHH-HHHHHH
Q psy694 171 ---DTKFV-----------------SIPETFWWAGITMTT------VGYGDI--CPTTPLG-----KMIGSVC-CVCGVL 216 (306)
Q Consensus 171 ---~~~f~-----------------~~~~a~y~~~~t~tt------vGygd~--~p~~~~~-----~~~~~~~-il~g~~ 216 (306)
.++.. .--++++.+++|... -|-||+ .|..+-+ -++-.++ .++-++
T Consensus 2477 tc~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiI 2556 (2706)
T KOG3533|consen 2477 TCPSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIII 2556 (2706)
T ss_pred cCCCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 00000 011567777776653 345675 3444322 2233333 334467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 217 VIALPIPIIVNNFAEFYKNQMRREKALK 244 (306)
Q Consensus 217 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 244 (306)
++|++.|+|++.|.++..++.+.++..|
T Consensus 2557 VLNLIFGVIIDTFaDLRsEKqkKEeILK 2584 (2706)
T KOG3533|consen 2557 VLNLIFGVIIDTFADLRSEKQKKEEILK 2584 (2706)
T ss_pred HHHHHHHhhhhhHHHHHhhhhHHHHHHh
Confidence 9999999999999998766655444443
No 35
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=92.03 E-value=0.3 Score=38.18 Aligned_cols=55 Identities=16% Similarity=0.269 Sum_probs=41.6
Q ss_pred ccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 176 SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 176 ~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
+..+++|+++.+++. +-++..|.+..+|++...+.++++++.+...|.+++.+..
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566888888877776 4467999999999999999999999999999999888774
No 36
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=86.14 E-value=6.5 Score=31.67 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhc
Q psy694 30 NPKLAIVEAVCITWFSVEYLLRLGA 54 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~~~~ 54 (306)
...+.++|.+..+...++.......
T Consensus 30 ~~~~~~~d~~~~~~~~~~~~~~~~~ 54 (200)
T PF00520_consen 30 RSWWNWFDFISVIPSIVSVILRSYG 54 (200)
T ss_dssp CSHHHHHHHHHHHHHCCHHCCHCSS
T ss_pred cChhhcccccccccccccccccccc
Confidence 5678888888877777777666543
No 37
>KOG4440|consensus
Probab=79.29 E-value=3.3 Score=39.98 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=46.1
Q ss_pred cCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 174 FVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 174 f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
-.++..|+||+--.+..-|-|+-+|.+-.+|++.++|.=+++++++..++.+.+.+.
T Consensus 611 alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 611 ALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred hcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 357889999999888888999999999999999999976666677776666655444
No 38
>KOG1053|consensus
Probab=77.92 E-value=18 Score=36.77 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=39.0
Q ss_pred ccchhhh--hhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 176 SIPETFW--WAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 176 ~~~~a~y--~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
++..|+| |+++.=-+| .--.|.++.+|+.+.+|.++++++++..++.+.+.+.
T Consensus 609 tigkaiwllwaLvFnnsV--pv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMI 663 (1258)
T KOG1053|consen 609 TIGKAIWLLWALVFNNSV--PVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMI 663 (1258)
T ss_pred ehhhHHHHHHHHHhCCCc--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778887 655433333 1235677889999999999999999988888776665
No 39
>KOG3713|consensus
Probab=77.74 E-value=65 Score=30.52 Aligned_cols=67 Identities=28% Similarity=0.345 Sum_probs=46.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHH
Q psy694 30 NPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVV 109 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (306)
...++++|.+-..=|-+|.++..... ...+.+... +...+++
T Consensus 272 k~pLNIIDllAIlPFYielll~~~~~-~~~~~l~~~-------------------------------------~~vvrvl 313 (477)
T KOG3713|consen 272 KSPLNIIDLLAILPFYLELLLTLFGG-ESLKELENA-------------------------------------GLVVRVL 313 (477)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHhcc-chHHHHhhh-------------------------------------hhhHHHH
Confidence 57899999999999999999887764 222343331 1223788
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHH
Q psy694 110 QVFRIMRILRILKLARHSTGLQSLG 134 (306)
Q Consensus 110 ~~lrllRllR~~rl~~~~~~~~~l~ 134 (306)
|++|++|++|+-|...-.+.+-.-.
T Consensus 314 R~lRI~RI~KLaRhS~GLr~lg~Tl 338 (477)
T KOG3713|consen 314 RVLRILRIFKLARHSTGLRTLGLTL 338 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 8999999999988766665554433
No 40
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=77.17 E-value=32 Score=31.69 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhcccCCCCccCccchhhhhhhhhhccccccCCccCC
Q psy694 128 TGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAY-------FAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 200 (306)
Q Consensus 128 ~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~-------~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~ 200 (306)
.+.+.+..++-.++-.+..+.+-+.+..+-.++-.+ +..+.......+.|.-+|-|++..+.+++-++.....
T Consensus 45 ~~ar~lLstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p 124 (371)
T PF10011_consen 45 DGARTLLSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVP 124 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHccccccccCc
Confidence 445555556655555555554444444333333222 2222222333446667777888888777655442222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 201 PLGKMIGSVCCVCGVLVIALPIPIIVNNF 229 (306)
Q Consensus 201 ~~~~~~~~~~il~g~~~~~~~i~~i~~~~ 229 (306)
..+-.+++++.+.+++.+-+++..+...+
T Consensus 125 ~~~~~~a~~l~i~~v~~li~fI~~i~~~i 153 (371)
T PF10011_consen 125 RLSVFIALALAILSVVLLIYFIHHIARSI 153 (371)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333444444444555555555544333
No 41
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=73.96 E-value=15 Score=35.25 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=34.6
Q ss_pred ccchhhhhhhhhhcccccc--CCccCCccc------hhHHHHHHHHH-HHHHHHHHHH
Q psy694 176 SIPETFWWAGITMTTVGYG--DICPTTPLG------KMIGSVCCVCG-VLVIALPIPI 224 (306)
Q Consensus 176 ~~~~a~y~~~~t~ttvGyg--d~~p~~~~~------~~~~~~~il~g-~~~~~~~i~~ 224 (306)
++.++++=++.++.|||-| -..+.++.. ++..++.|+.| +..+.+.+..
T Consensus 424 ~~~~~lfEv~SA~gtVGlSlG~t~~~~~~~~~~~~~K~vli~~M~~GRleil~~lv~~ 481 (499)
T COG0168 424 PFIDALFEVVSAFGTVGLSLGITGDLASNFALPPLAKLVLIALMLIGRLEILTVLVLF 481 (499)
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCCCCccccccCchHHHHHHHHHHhhccchhhHHHhh
Confidence 5778998888999999874 333223333 88888889988 5677765544
No 42
>KOG1052|consensus
Probab=73.04 E-value=13 Score=36.91 Aligned_cols=56 Identities=11% Similarity=0.190 Sum_probs=44.6
Q ss_pred cCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 174 FVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 174 f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
..+..+++|.++.++..-| ++..|.+..+|++..+|.++++++.+...|.+.+.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 379 LFSLLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred EeecccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566777777777777 4589999999999999999999999998888776665
No 43
>KOG1545|consensus
Probab=69.99 E-value=25 Score=31.94 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy694 104 DVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLL 147 (306)
Q Consensus 104 ~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~ 147 (306)
.-...+.++|.+|+.|.+|+.+..+.-+-+ +.+-+..++-+.=
T Consensus 318 qqaMSlAILRViRLVRVFRIFKLSRHSkGL-QILGqTl~aSmrE 360 (507)
T KOG1545|consen 318 QQAMSLAILRVIRLVRVFRIFKLSRHSKGL-QILGQTLRASMRE 360 (507)
T ss_pred hhhhhHHHHHHHHHHHHhhheeeccccchH-HHHHHHHHHHHHH
Confidence 445668889999999999988866654443 4555555554443
No 44
>KOG3733|consensus
Probab=69.09 E-value=1e+02 Score=28.85 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=33.7
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy694 121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKD 168 (306)
Q Consensus 121 ~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~ 168 (306)
+|.+.++...+.+.-++..+.+++..++....+.-+-|+..|+.+-+.
T Consensus 391 IRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP 438 (566)
T KOG3733|consen 391 IRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP 438 (566)
T ss_pred HHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc
Confidence 344445667788888999999999888777666666666666655443
No 45
>KOG1054|consensus
Probab=61.84 E-value=13 Score=36.00 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=44.7
Q ss_pred ccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 176 SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 176 ~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
...+++||++..+..-| -|+.|.+-.||+....|=++.+++++..++.+.+.+.
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 45699999999999888 4999999999999988888777777777777665554
No 46
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=55.20 E-value=1.6e+02 Score=27.55 Aligned_cols=24 Identities=13% Similarity=-0.045 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHh
Q psy694 30 NPKLAIVEAVCITWFSVEYLLRLG 53 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~~~ 53 (306)
...|..+|.+..+..++-+++.++
T Consensus 241 ~~~WN~~e~~ii~ls~~~i~~~~~ 264 (425)
T PF08016_consen 241 KSFWNWLELLIILLSLAVIVLYFY 264 (425)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHH
Confidence 456667777766666655555553
No 47
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=51.26 E-value=47 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=30.2
Q ss_pred CccchhhhhhhhhhccccccC---CccCCccchhHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGD---ICPTTPLGKMIGSVCCVCG 214 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd---~~p~~~~~~~~~~~~il~g 214 (306)
.++.++++=+..++.|+|.+- ....++.+|+..++.|+.|
T Consensus 347 ~~~~~~~fe~~Sa~~tvGls~g~~~~~l~~~~k~il~~~M~~G 389 (390)
T TIGR00933 347 YDFLTSLFEVVSAFGTVGLSVGLTTANLPDAGKLILIVLMFIG 389 (390)
T ss_pred CCHHHHHHHHHHHhcCcCCCCCCCcccCCHHHHHHHHHHHHcC
Confidence 467788888889999998642 2345677888888888765
No 48
>PRK10750 potassium transporter; Provisional
Probab=48.67 E-value=1e+02 Score=29.59 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=34.9
Q ss_pred ccchhhhhhhhhhcccccc--CC----ccCCccchhHHHHHHHHH-HHHHHHHHH
Q psy694 176 SIPETFWWAGITMTTVGYG--DI----CPTTPLGKMIGSVCCVCG-VLVIALPIP 223 (306)
Q Consensus 176 ~~~~a~y~~~~t~ttvGyg--d~----~p~~~~~~~~~~~~il~g-~~~~~~~i~ 223 (306)
+..+|+--+..++.++|.| .. ...++.+|+..++.|+.| +-++++.+.
T Consensus 421 ~~~sA~~~v~s~l~nvG~s~G~~~~~f~~l~~~~K~il~~~MllGRLEi~tvl~~ 475 (483)
T PRK10750 421 DDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVL 475 (483)
T ss_pred cHHHHHHHHHHHhcCCCCCchhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668888888888888864 23 345678899999999999 556665443
No 49
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=47.56 E-value=98 Score=31.82 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=11.2
Q ss_pred ccchhHhHhhhhHHHHHHH
Q psy694 65 GLNVIDLLAIMPYYISLFL 83 (306)
Q Consensus 65 ~~~~~D~~~~ip~~~~~~~ 83 (306)
.|.++|.++-+...++++.
T Consensus 93 ~~~~~d~i~~~~F~iDi~l 111 (823)
T PLN03192 93 GLEIADNVVDLFFAVDIVL 111 (823)
T ss_pred CeeeHHHHHHHHHHHHHHh
Confidence 3556777666666555543
No 50
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=45.93 E-value=40 Score=31.20 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=28.6
Q ss_pred Cccchhhhhhhhhhcccccc--CCccCCccchhHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYG--DICPTTPLGKMIGSVCCVCG 214 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGyg--d~~p~~~~~~~~~~~~il~g 214 (306)
....++.++..++.+|.||. |...-++..+++.++.|++|
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIG 271 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIG 271 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHc
Confidence 45668889999999999985 44444455566777777666
No 51
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.59 E-value=93 Score=23.52 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 204 KMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMR 238 (306)
Q Consensus 204 ~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~ 238 (306)
+-|+.+-+++.++++++..+.+.-.+.....+..+
T Consensus 8 rGFTLiElLVvl~Iigil~~~~~p~~~~~~~~~~~ 42 (149)
T COG2165 8 RGFTLIELLVVLAIIGILAALALPSLQGSIDKAKR 42 (149)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 56888888888888998888888777765555433
No 52
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=45.58 E-value=1.5e+02 Score=28.90 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=37.9
Q ss_pred Cccchhhhhhhhhhccccc--cCCccCCccchhHHHHHHHHH-HHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGY--GDICPTTPLGKMIGSVCCVCG-VLVIALPIPI 224 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGy--gd~~p~~~~~~~~~~~~il~g-~~~~~~~i~~ 224 (306)
..+.+-+|=......|+|- |+..+.++.+++..++.|++| +..+....+.
T Consensus 450 hgfseiLyE~~SA~~tnGss~gGLt~~t~~~niil~~~M~iGR~Gpit~~lAl 502 (559)
T PRK05482 450 HGFSEVLYAYTSAAANNGSAFAGLGANTPFWNLTLGIAMLLGRFLPIIPVLAI 502 (559)
T ss_pred CCHHHHHHHHHhhccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778877777778875 558888999999999999999 5566555543
No 53
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=43.05 E-value=1.1e+02 Score=20.92 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy694 199 TTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRR-EKALKRREAMERAK 253 (306)
Q Consensus 199 ~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 253 (306)
.+|.+-+.++++++.-+.+++-+.+ -.+....+++.++ ++..++.+...+.+
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~lS---wkLaK~ie~~ere~K~k~Kr~~~i~k~r 69 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVLS---WKLAKAIEKEEREKKKKAKRQANIAKAR 69 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544333 3344444443333 33333334444443
No 54
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.31 E-value=98 Score=20.31 Aligned_cols=18 Identities=0% Similarity=-0.055 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy694 213 CGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 213 ~g~~~~~~~i~~i~~~~~ 230 (306)
.+...++.+++.+.....
T Consensus 25 l~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLPS 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555444444
No 55
>KOG3609|consensus
Probab=39.46 E-value=3.2e+02 Score=27.95 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=32.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhcccch-----hhhhccccchhHhHhhh
Q psy694 30 NPKLAIVEAVCITWFSVEYLLRLGASPEK-----WKFFKGGLNVIDLLAIM 75 (306)
Q Consensus 30 ~~~~~i~~~i~~~~F~~e~~l~~~~~~~~-----~~y~~~~~~~~D~~~~i 75 (306)
..+|.++|++-..+|++-+.+++.+.... ..+-|..|.-+|...+-
T Consensus 415 ~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~ 465 (822)
T KOG3609|consen 415 AFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLA 465 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHH
Confidence 57899999999999999999999775321 12334556666654443
No 56
>PLN03223 Polycystin cation channel protein; Provisional
Probab=39.39 E-value=1.8e+02 Score=31.58 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.8
Q ss_pred chhhhhccccchhHhHhhhhHHHHHH
Q psy694 57 EKWKFFKGGLNVIDLLAIMPYYISLF 82 (306)
Q Consensus 57 ~~~~y~~~~~~~~D~~~~ip~~~~~~ 82 (306)
.+++||+++||++|++.+..++..+.
T Consensus 1206 ~~laYFKSfWNwLEIl~IlLS~AAIv 1231 (1634)
T PLN03223 1206 SYLAYFLSGWNYVDFASIGLHLATIM 1231 (1634)
T ss_pred chhhHhccchHHHHHHHHHHHHHHHH
Confidence 34799999999999998876665543
No 57
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=37.88 E-value=1.8e+02 Score=22.26 Aligned_cols=29 Identities=3% Similarity=0.077 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 206 IGSVCCVCGVLVIALPIPIIVNNFAEFYK 234 (306)
Q Consensus 206 ~~~~~il~g~~~~~~~i~~i~~~~~~~~~ 234 (306)
|+.+-+++.+++++++.++++-.+....+
T Consensus 3 FTLiEllivlaIigil~~i~~p~~~~~~~ 31 (134)
T TIGR01710 3 FTLLEIMVVLVILGLLAALVAPKLFSQAD 31 (134)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777766666655433
No 58
>COG1422 Predicted membrane protein [Function unknown]
Probab=36.50 E-value=1.4e+02 Score=24.89 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy694 218 IALPIPIIVNNFAE 231 (306)
Q Consensus 218 ~~~~i~~i~~~~~~ 231 (306)
.+.++|.+.+.+++
T Consensus 53 ~avi~gl~~~i~~~ 66 (201)
T COG1422 53 AAVITGLYITILQK 66 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 59
>PRK11677 hypothetical protein; Provisional
Probab=36.15 E-value=33 Score=26.55 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=4.3
Q ss_pred chhHHHHhh
Q psy694 264 VNLRDAFAK 272 (306)
Q Consensus 264 ~~l~~~~~~ 272 (306)
.++-++.++
T Consensus 71 ~~Ly~HlA~ 79 (134)
T PRK11677 71 RQLYQHMAK 79 (134)
T ss_pred HHHHHHHHH
Confidence 335555544
No 60
>COG0168 TrkG Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=33.93 E-value=2.1e+02 Score=27.61 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=26.6
Q ss_pred ccchhhhhhhhhhccccccCCccCC-------ccchhHHHHHHHHHHHHHHH
Q psy694 176 SIPETFWWAGITMTTVGYGDICPTT-------PLGKMIGSVCCVCGVLVIAL 220 (306)
Q Consensus 176 ~~~~a~y~~~~t~ttvGygd~~p~~-------~~~~~~~~~~il~g~~~~~~ 220 (306)
+..||++.++.+++|-|+. ..+.+ +.=.+.++++|+.|-+-++.
T Consensus 198 ~~~dAi~hs~Sa~~ngGFS-~~~~Si~~f~~~~~i~~i~~~liI~GgigF~v 248 (499)
T COG0168 198 PLFDAIFHSMSAFNNGGFS-THDASIGYFNGSPLINLIITILIILGGIGFPV 248 (499)
T ss_pred CHHHHHHHHHHHhhcCCCC-CCcchhhhcccChhHHHHHHHHHHHhcCChHH
Confidence 4457999999999999984 44432 22234455555555444443
No 61
>PRK10506 hypothetical protein; Provisional
Probab=33.89 E-value=2.1e+02 Score=22.75 Aligned_cols=34 Identities=3% Similarity=0.022 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 204 KMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQM 237 (306)
Q Consensus 204 ~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~ 237 (306)
+-|+.+-+++.+++++++.+...-.+....++.+
T Consensus 9 ~GFTLiEllvvl~Ii~il~~~a~p~~~~~~~~~~ 42 (162)
T PRK10506 9 RGYTLIELLVVMTIVSILSAWGLYGWQRWQQRQR 42 (162)
T ss_pred CCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888777776554433
No 62
>TIGR01711 gspJ general secretion pathway protein J. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=33.33 E-value=2.5e+02 Score=23.09 Aligned_cols=31 Identities=3% Similarity=-0.056 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 206 IGSVCCVCGVLVIALPIPIIVNNFAEFYKNQ 236 (306)
Q Consensus 206 ~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~ 236 (306)
|+.+-+++++++++++.......+....+..
T Consensus 3 FTLiEllval~I~ail~~~~~~~~~~~~~~~ 33 (192)
T TIGR01711 3 FTLLELLVAIAIFASLSLGAYQVLDSVMQSD 33 (192)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777776666666544433
No 63
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=32.64 E-value=76 Score=28.85 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=27.3
Q ss_pred cchhhhhhhhhhcccccc--CCcc-CCcc---chhHHHHHHHHH-HHHHHH
Q psy694 177 IPETFWWAGITMTTVGYG--DICP-TTPL---GKMIGSVCCVCG-VLVIAL 220 (306)
Q Consensus 177 ~~~a~y~~~~t~ttvGyg--d~~p-~~~~---~~~~~~~~il~g-~~~~~~ 220 (306)
+.++++=+...+.|+|.+ ...| .+.. +|++.++.|+.| .-.++.
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRle~~~~ 345 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRLEILPV 345 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCccHHHH
Confidence 568888888999998863 3223 3344 899999999988 445544
No 64
>KOG3012|consensus
Probab=30.18 E-value=46 Score=28.11 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=31.2
Q ss_pred hhhccccccCCccCCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy694 186 ITMTTVGYGDICPTTPLGKMIGSVCCV-CGVLVIALPIPIIVNNFAEFY 233 (306)
Q Consensus 186 ~t~ttvGygd~~p~~~~~~~~~~~~il-~g~~~~~~~i~~i~~~~~~~~ 233 (306)
...+++||+-....+..|-+-.+++++ +-++.++.++|.+.-.+.+.+
T Consensus 92 l~vssi~~a~~~~ls~~g~v~~~~~vvfvdf~~vG~iiAT~~wfi~Nry 140 (259)
T KOG3012|consen 92 LVVSSIGWAYVLDLSFIGFVKFLVWVVFVDFIIVGVIIATLFWFISNRY 140 (259)
T ss_pred HHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 566677776555555655555555554 347788888888877777543
No 65
>COG4795 PulJ Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
Probab=28.75 E-value=3.2e+02 Score=22.68 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 205 MIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMR 238 (306)
Q Consensus 205 ~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~ 238 (306)
-|+.+-+++++.+++++.......+.+..+....
T Consensus 8 GFTLLEvmvAl~i~All~l~a~~~L~s~~r~~~~ 41 (194)
T COG4795 8 GFTLLEVLVALAIFALLLLLAFRFLDSAQRSNQA 41 (194)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888877777777765554443
No 66
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=28.28 E-value=1.9e+02 Score=29.47 Aligned_cols=121 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHH--hhhhhhhhHHHHHHHH----------
Q psy694 70 DLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRIL--KLARHSTGLQSLGFTL---------- 137 (306)
Q Consensus 70 D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~--rl~~~~~~~~~l~~~~---------- 137 (306)
|....+++.+.++. ..+-+.-++|++... |+.+.....+....-+
T Consensus 521 ~~~vllvm~~LIi~-----------------------GntGFPVllrliiw~~~k~~~~~s~~~e~l~fll~~pRr~~s~ 577 (800)
T TIGR00934 521 NSYLLLLMIWFIII-----------------------GNTGFPIFLRLIIWILFKISPDLSKRKESLGFLLDHPRRCFTL 577 (800)
T ss_pred CccHHHHHHHHHHH-----------------------cccchHHHHHHHHHHHhhccccccchhhhhhhhccCccceecc
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhcccccc--CCccCCccchhHHHHHH
Q psy694 138 ----RNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYG--DICPTTPLGKMIGSVCC 211 (306)
Q Consensus 138 ----~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGyg--d~~p~~~~~~~~~~~~i 211 (306)
..+...+...+++.++.+++|.++-+--..-.+-+....+.+|++.++.+-|+ |+. |+...++...++.+++|
T Consensus 578 Lfps~~T~ill~tt~iL~~ig~ilf~lLE~nn~tl~~lp~g~Ril~aLFQSVstRTA-GFntVdls~Lspatlvl~iiLM 656 (800)
T TIGR00934 578 LFPSGATWWLFFTLVGLNAIDLILFIILDWGSSVVDGLSKGIKVLNGLFQSVSTRTA-GFTVVDLSQLHPAIQVSYMLMM 656 (800)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHHhcccccc-cccccchHhcChhHHHHHHHHH
Q ss_pred HHH
Q psy694 212 VCG 214 (306)
Q Consensus 212 l~g 214 (306)
.+|
T Consensus 657 yIG 659 (800)
T TIGR00934 657 YVS 659 (800)
T ss_pred Hhc
No 67
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.98 E-value=1.8e+02 Score=19.01 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy694 219 ALPIPIIVNN 228 (306)
Q Consensus 219 ~~~i~~i~~~ 228 (306)
++.+|.+...
T Consensus 27 ~f~~G~llg~ 36 (68)
T PF06305_consen 27 AFLLGALLGW 36 (68)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 68
>COG3817 Predicted membrane protein [Function unknown]
Probab=27.90 E-value=1.4e+02 Score=25.95 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=19.4
Q ss_pred CccchhhhhhhhhhccccccCCccC
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPT 199 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~ 199 (306)
..+.++.+|..-.+|-+| ||..|.
T Consensus 31 ~r~~t~~FW~l~~~tFl~-g~~lp~ 54 (313)
T COG3817 31 VRFGTGLFWGLFSLTFLG-GDRLPN 54 (313)
T ss_pred ceecchHHHHHHHHHHhc-cccccc
Confidence 677799999998888777 787665
No 69
>PF14163 SieB: Superinfection exclusion protein B
Probab=27.58 E-value=2.8e+02 Score=21.61 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy694 198 PTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKR 254 (306)
Q Consensus 198 p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
+.+..+.+....+++....+++.++..+...+.+..+++++.++.++..+.+....+
T Consensus 28 ~~~~y~~~i~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~Lt~~Ek 84 (151)
T PF14163_consen 28 FEIKYQPWIGLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKKLNSLTPEEK 84 (151)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
No 70
>PRK10750 potassium transporter; Provisional
Probab=26.96 E-value=3.2e+02 Score=26.23 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=16.7
Q ss_pred Cccchhhhhhhhhhccccc
Q psy694 175 VSIPETFWWAGITMTTVGY 193 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGy 193 (306)
.+..||+..++.+++|-|+
T Consensus 205 m~~fdAi~ha~saisTgGF 223 (483)
T PRK10750 205 MDAFDAIGHSFSTIAIGGF 223 (483)
T ss_pred CcHHHHHHHHHHHHhccCc
Confidence 5677999999999999887
No 71
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=26.93 E-value=2.3e+02 Score=19.92 Aligned_cols=34 Identities=6% Similarity=0.156 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 211 CVCGVLVIALPIPIIVNNFAEFYKNQMRREKALK 244 (306)
Q Consensus 211 il~g~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~ 244 (306)
.+++.++++.+++.+.+.+.+..++..+..++++
T Consensus 5 sLiAlall~~IvsLiL~~i~~sr~~~~~~l~qqE 38 (82)
T PF11773_consen 5 SLIALALLATIVSLILGQIQQSRQEMAEELQQQE 38 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888777764444433333333
No 72
>KOG2243|consensus
Probab=26.82 E-value=1.8e+02 Score=31.90 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=51.8
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cc-CCCCccCccchhhhhhhh--h
Q psy694 119 RILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAE--------KD-EHDTKFVSIPETFWWAGI--T 187 (306)
Q Consensus 119 R~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~--------~~-~~~~~f~~~~~a~y~~~~--t 187 (306)
.++.+...+..++.+..++...-+.+....-++.+.+++|.++.+-+. .+ .++-..++...+..|.+- .
T Consensus 4794 hlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgv 4873 (5019)
T KOG2243|consen 4794 HLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGV 4873 (5019)
T ss_pred HHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeee
Confidence 344455555555555544333333344444455556666665554221 11 122233344444333221 1
Q ss_pred hccccccCCc--cCCc----cchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy694 188 MTTVGYGDIC--PTTP----LGKMIGSVCCV-CGVLVIALPIPIIVNNFAEFY 233 (306)
Q Consensus 188 ~ttvGygd~~--p~~~----~~~~~~~~~il-~g~~~~~~~i~~i~~~~~~~~ 233 (306)
-..-|-||-. |.+. ...+|-+.+.+ +-+++++++-|.|++.|-++.
T Consensus 4874 ragggigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelr 4926 (5019)
T KOG2243|consen 4874 RAGGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELR 4926 (5019)
T ss_pred ecCCcccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhH
Confidence 1233556642 2221 22233333322 335677777777887777643
No 73
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.48 E-value=3.3e+02 Score=20.94 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q psy694 217 VIALPIPIIVNNFA 230 (306)
Q Consensus 217 ~~~~~i~~i~~~~~ 230 (306)
++++++|.++..+-
T Consensus 16 vvGi~IG~li~Rlt 29 (138)
T COG3105 16 VVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHc
Confidence 44555565555444
No 74
>TIGR01708 typeII_sec_gspH general secretion pathway protein H. This model represents GspH, protein H of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=23.28 E-value=3.4e+02 Score=20.71 Aligned_cols=29 Identities=3% Similarity=-0.015 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 204 KMIGSVCCVCGVLVIALPIPIIVNNFAEF 232 (306)
Q Consensus 204 ~~~~~~~il~g~~~~~~~i~~i~~~~~~~ 232 (306)
+-|+.+-+++.++++++..+...-.+...
T Consensus 4 ~GFTLiEllvvlaIiail~~~~~~~~~~~ 32 (143)
T TIGR01708 4 SGFTLIELLVVLAIMGLVAAAAALSLVSH 32 (143)
T ss_pred CcEEHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45777778888888888777777776653
No 75
>TIGR02596 Verrucomicrobium spinosum paralogous family TIGR02596. This model describes a nearly twenty member protein family unique to Verrucomicrobium spinosum. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). Sequences are from 207 to 248 in length. The function is unknown.
Probab=23.23 E-value=4e+02 Score=22.09 Aligned_cols=28 Identities=11% Similarity=0.085 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 207 GSVCCVCGVLVIALPIPIIVNNFAEFYK 234 (306)
Q Consensus 207 ~~~~il~g~~~~~~~i~~i~~~~~~~~~ 234 (306)
+.+-+++.+++++++.+...-.+.....
T Consensus 2 TLIELLVVLaIiaILaaia~P~l~~~~~ 29 (195)
T TIGR02596 2 TLVELLVVIAIIAVLMALSTPVVNQVLA 29 (195)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3445555666666666666656655443
No 76
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.33 E-value=49 Score=25.36 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=4.5
Q ss_pred chhHHHHhhc
Q psy694 264 VNLRDAFAKS 273 (306)
Q Consensus 264 ~~l~~~~~~~ 273 (306)
.++.++.++.
T Consensus 67 ~~l~~Hla~~ 76 (128)
T PF06295_consen 67 QKLYQHLAKG 76 (128)
T ss_pred HHHHHHHHHH
Confidence 3344454444
No 77
>KOG4550|consensus
Probab=21.67 E-value=1.5e+02 Score=27.83 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=10.9
Q ss_pred ccccCCccCCccchhH
Q psy694 191 VGYGDICPTTPLGKMI 206 (306)
Q Consensus 191 vGygd~~p~~~~~~~~ 206 (306)
+-|.+-+|..|.+++|
T Consensus 539 iP~p~n~P~hW~a~Ly 554 (606)
T KOG4550|consen 539 IPYPHNVPRHWSAKLY 554 (606)
T ss_pred eCCCCCCCccceeeEE
Confidence 5677788877766554
No 78
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=21.58 E-value=3.9e+02 Score=21.18 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy694 215 VLVIALPIPIIVNNFAE 231 (306)
Q Consensus 215 ~~~~~~~i~~i~~~~~~ 231 (306)
+++++.+.+.+...++.
T Consensus 19 v~~~~~~~~~~s~l~~~ 35 (168)
T PF01956_consen 19 VFLIAILRGLISELLQK 35 (168)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444445555544444
No 79
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=20.12 E-value=6.2e+02 Score=22.49 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=27.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 202 LGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKN 235 (306)
Q Consensus 202 ~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~ 235 (306)
...++..++++....+++..+|+..+.+-+.|.+
T Consensus 70 ~~Ai~GTl~~~~~~~li~~PiGv~aaIYL~EYa~ 103 (292)
T COG0581 70 GPAIVGTLYLILLAILIGVPLGIGAGIYLAEYAK 103 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3367888888888899999999998888865553
Done!