Query psy694
Match_columns 306
No_of_seqs 175 out of 2248
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 22:38:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r9r_B Paddle chimera voltage 100.0 8.7E-36 3E-40 280.9 18.0 226 2-237 191-436 (514)
2 1orq_C Potassium channel; volt 100.0 2.3E-32 7.9E-37 232.1 18.7 203 2-231 17-220 (223)
3 3rvy_A ION transport protein; 100.0 2.9E-32 9.9E-37 239.9 10.8 204 2-238 39-248 (285)
4 3beh_A MLL3241 protein; transm 100.0 2.2E-31 7.6E-36 241.4 11.2 202 2-234 17-219 (355)
5 4dxw_A Navrh, ION transport pr 100.0 1.7E-28 5.7E-33 209.1 10.0 200 2-231 21-225 (229)
6 2a9h_A Voltage-gated potassium 99.9 2.1E-22 7.3E-27 159.6 7.4 85 149-233 57-141 (155)
7 2ih3_C Voltage-gated potassium 99.8 1.3E-20 4.4E-25 143.9 10.1 116 108-233 3-118 (122)
8 3eff_K Voltage-gated potassium 99.8 3.1E-18 1.1E-22 134.0 10.7 95 142-236 6-100 (139)
9 1ors_C Potassium channel; volt 99.7 2.3E-18 7.9E-23 133.2 7.6 115 2-144 15-129 (132)
10 2k1e_A Water soluble analogue 99.7 2.7E-17 9.4E-22 121.6 8.9 89 145-233 9-97 (103)
11 4h33_A LMO2059 protein; bilaye 99.7 5.2E-17 1.8E-21 126.3 5.0 77 150-231 22-98 (137)
12 3vou_A ION transport 2 domain 99.7 1.8E-15 6.1E-20 119.4 13.3 77 147-229 29-105 (148)
13 2q67_A Potassium channel prote 99.6 3.5E-15 1.2E-19 112.1 9.1 78 148-231 27-104 (114)
14 3pjs_K KCSA, voltage-gated pot 99.6 7.8E-17 2.7E-21 129.6 -1.5 84 153-236 44-127 (166)
15 3ouf_A Potassium channel prote 99.5 2.1E-14 7E-19 104.7 8.8 79 147-231 9-87 (97)
16 3ldc_A Calcium-gated potassium 99.5 4.1E-14 1.4E-18 99.9 8.2 70 153-229 11-81 (82)
17 2kyh_A KVAP, voltage-gated pot 99.5 5.4E-14 1.9E-18 110.2 7.5 110 2-139 30-139 (147)
18 1p7b_A Integral membrane chann 99.4 8.4E-13 2.9E-17 116.9 9.4 95 137-231 56-151 (333)
19 1xl4_A Inward rectifier potass 99.4 9.1E-13 3.1E-17 115.4 9.1 79 152-230 58-136 (301)
20 2qks_A KIR3.1-prokaryotic KIR 99.3 2.9E-12 9.8E-17 113.1 10.1 77 153-231 55-133 (321)
21 3um7_A Potassium channel subfa 99.2 8E-12 2.7E-16 109.1 6.2 59 175-233 223-287 (309)
22 3ukm_A Potassium channel subfa 99.2 2.6E-11 9E-16 104.2 8.9 75 151-231 181-263 (280)
23 3um7_A Potassium channel subfa 99.1 2.4E-10 8.1E-15 99.8 11.1 60 175-234 114-173 (309)
24 1lnq_A MTHK channels, potassiu 99.1 2.1E-12 7.2E-17 115.6 -5.0 79 148-232 23-101 (336)
25 4gx0_A TRKA domain protein; me 99.1 5.2E-10 1.8E-14 106.9 11.3 57 175-231 50-107 (565)
26 3sya_A G protein-activated inw 99.0 4.5E-10 1.5E-14 99.2 8.9 84 148-231 50-148 (340)
27 3ukm_A Potassium channel subfa 99.0 7E-10 2.4E-14 95.4 8.9 60 174-233 91-150 (280)
28 3spc_A Inward-rectifier K+ cha 99.0 9.7E-10 3.3E-14 97.2 7.7 59 173-231 91-151 (343)
29 4f4l_A ION transport protein; 98.8 1.6E-09 5.5E-14 80.7 3.8 96 141-236 3-104 (112)
30 3rvy_A ION transport protein; 95.1 0.28 9.5E-06 41.9 11.9 130 113-243 114-249 (285)
31 2r9r_B Paddle chimera voltage 94.8 0.25 8.6E-06 46.2 11.5 26 109-134 305-330 (514)
32 4dxw_A Navrh, ION transport pr 93.1 0.28 9.5E-06 40.5 7.5 124 112-236 98-226 (229)
33 3kg2_A Glutamate receptor 2; I 92.7 0.12 4.1E-06 51.0 5.5 55 176-231 563-617 (823)
34 2lcm_A Voltage-dependent N-typ 88.3 0.25 8.5E-06 26.3 1.7 24 107-130 4-27 (28)
35 2a9h_A Voltage-gated potassium 83.0 2.8 9.7E-05 32.2 6.2 11 67-77 16-26 (155)
36 3beh_A MLL3241 protein; transm 82.2 8.6 0.0003 33.5 9.9 23 219-241 200-222 (355)
37 1qg9_A Protein (sodium channel 69.0 2 6.7E-05 22.3 1.1 20 37-56 3-22 (26)
38 1orq_C Potassium channel; volt 62.7 57 0.0019 26.0 17.9 25 110-134 97-121 (223)
39 1ors_C Potassium channel; volt 57.3 12 0.00042 27.6 4.2 24 109-132 91-114 (132)
40 2knc_B Integrin beta-3; transm 55.6 43 0.0015 22.3 8.2 20 210-229 16-35 (79)
41 2kyh_A KVAP, voltage-gated pot 49.7 15 0.0005 27.9 3.5 17 66-82 54-70 (147)
42 3pjz_A Potassium uptake protei 29.8 45 0.0015 30.7 4.1 40 175-214 305-346 (494)
43 1q90_M Cytochrome B6F complex 22.0 1.2E+02 0.0041 17.2 3.4 29 203-231 4-32 (39)
44 3pjz_A Potassium uptake protei 21.5 60 0.002 29.9 3.2 46 176-221 423-475 (494)
No 1
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=100.00 E-value=8.7e-36 Score=280.88 Aligned_cols=226 Identities=54% Similarity=0.982 Sum_probs=193.6
Q ss_pred ChhhHHHHHHHhcccccccccc--------------------CCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhh
Q psy694 2 FIVLSTVALTLNTIPSLQHKDK--------------------AGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKF 61 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~--------------------~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y 61 (306)
+|++|+++++++|++.++...+ ++ ......+.++|.++.++|++|+++|+++++.|++|
T Consensus 191 ~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ie~i~~~iFtiE~ilR~~~~~~k~~Y 269 (514)
T 2r9r_B 191 VILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQS-TSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGF 269 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HHHHHHHHhhhhcccccccccccccccccccccccccccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 6899999999999887543310 01 11256899999999999999999999999999999
Q ss_pred hccccchhHhHhhhhHHHHHHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy694 62 FKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSY 141 (306)
Q Consensus 62 ~~~~~~~~D~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~ 141 (306)
+|++||++|+++++|+++.+........++ .+......++++|++|++|++|+.++.++++.+..++..+.
T Consensus 270 ~ks~wniiDli~iip~~i~l~~~~~~~~~~---------~~~~~~~~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~ 340 (514)
T 2r9r_B 270 FTNIMNIIDIVAIIPYYVTIFLTESNKSVL---------QFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASM 340 (514)
T ss_dssp TTSHHHHHHHHTTHHHHHHHHHHHTSCSHH---------HHHTTHHHHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTH
T ss_pred HhchhHHHHHHHHHHHHHHHHhhhccccch---------hhhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 999999999999999998877643322110 11122367899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHH
Q psy694 142 KELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALP 221 (306)
Q Consensus 142 ~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~ 221 (306)
+.+..+++++++++.+||+++|..++..++.+|.++++|+||+++|+||+||||++|.++.|++++++++++|+++++++
T Consensus 341 ~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~ 420 (514)
T 2r9r_B 341 RELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALP 420 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHH
Confidence 99998888888899999999999988878889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy694 222 IPIIVNNFAEFYKNQM 237 (306)
Q Consensus 222 i~~i~~~~~~~~~~~~ 237 (306)
+|++.+++++.+++++
T Consensus 421 iavI~~~f~~~~~~~~ 436 (514)
T 2r9r_B 421 VPVIVSNFNYFYHRET 436 (514)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776433
No 2
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=100.00 E-value=2.3e-32 Score=232.12 Aligned_cols=203 Identities=23% Similarity=0.372 Sum_probs=157.9
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
++++|++.+++++++..++.. ...+.++|.+++++|++|+++|++++++|++|+|+ |++|+++++|.++..
T Consensus 17 lil~~~~~~~~~~~~~~~~~~-------~~~l~~~d~~~~~iF~~e~~lr~~~~~~~~~y~~~--~iiDllailP~~~~~ 87 (223)
T 1orq_C 17 AALLSVIVVVVECTMQLSGEY-------LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLA 87 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT-------TTHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH--HHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccChhh-------hhHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH--hHHHHHHHHHHHHHH
Confidence 578899999999877665555 68899999999999999999999999999999998 899999999998866
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHS-TGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS 160 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~-~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~ 160 (306)
...... ... ..+|.+|++|++|++|+.+.. +..+.+...+.. ..+..+..++++.++++|+
T Consensus 88 ~~~~~~-------------~~~---~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~ 149 (223)
T 1orq_C 88 LIEGHL-------------AGL---GLFRLVRLLRFLRILLIISRGSKFLSAIADAADK--IRFYHLFGAVMLTVLYGAF 149 (223)
T ss_dssp HHHHHH-------------HTT---TCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHhcch-------------hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 421100 001 123444444444444444322 223333333332 2355566666777788888
Q ss_pred HHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 161 LAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 161 ~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
+.+..|++.++++++++.+|+||+++|+||+||||++|.++.||+++++.++.|++++++++|.+.+.+++
T Consensus 150 ~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 150 AIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777888999999999999999999999999999999999999999999999999999988875
No 3
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.97 E-value=2.9e-32 Score=239.89 Aligned_cols=204 Identities=19% Similarity=0.293 Sum_probs=171.5
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
+|++|++.+++++++..++.. ...+..+|.++.++|++|+++|+++++ ++|+++.||++|+++++|+++..
T Consensus 39 li~l~~i~~~~~~~~~~~~~~-------~~~l~~~e~~~~~iF~~E~~lrl~~~~--~~y~~~~wn~~Dl~~v~~~~i~~ 109 (285)
T 3rvy_A 39 LIVLNGITMGLETSKTFMQSF-------GVYTTLFNQIVITIFTIEIILRIYVHR--ISFFKDPWSLFDFFVVAISLVPT 109 (285)
T ss_dssp HHHHHHHHHHHTTCTTHHHHS-------HHHHHHHHHHHHHHHHHHHHHHHHTTG--GGGGGCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhcCcccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHcCChHHhHHHHHHHHHHcc
Confidence 688999999999987555555 578999999999999999999999988 58999999999999999987531
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~ 161 (306)
. ..++++|++|++|++|+.+..++++.+..++..+.+.+..+++++++++++||++
T Consensus 110 ----~--------------------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~ 165 (285)
T 3rvy_A 110 ----S--------------------SGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIM 165 (285)
T ss_dssp ----S--------------------SSCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred ----c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1134677777888888888888999999999999999999999999999999999
Q ss_pred HhhhcccCCCCccCccchhhhhhhhhhcccccc-CCc-cCCccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 162 AYFAEKDEHDTKFVSIPETFWWAGITMTTVGYG-DIC-PTTPLG----KMIGSVCCVCGVLVIALPIPIIVNNFAEFYKN 235 (306)
Q Consensus 162 ~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGyg-d~~-p~~~~~----~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~~ 235 (306)
++..+++..+++|.++++|+||+++++||+||| |+. |.+..+ ++++.+.+++|++++|+++|++.+++++..++
T Consensus 166 g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~ 245 (285)
T 3rvy_A 166 ATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQK 245 (285)
T ss_dssp HHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888889999999999999999999999 985 776644 77888888999999999999999999976655
Q ss_pred HHH
Q psy694 236 QMR 238 (306)
Q Consensus 236 ~~~ 238 (306)
+++
T Consensus 246 ~~~ 248 (285)
T 3rvy_A 246 EEQ 248 (285)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.97 E-value=2.2e-31 Score=241.37 Aligned_cols=202 Identities=24% Similarity=0.333 Sum_probs=169.2
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhh-hhHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAI-MPYYIS 80 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~-ip~~~~ 80 (306)
+|++|+++++++|.+..+... ...++.++.++..+|++|+++|+++++.++.|++++||++|++++ +|.+..
T Consensus 17 ~i~ls~~~~~~~t~~~~~~~~-------~~~~~~~~~~~~~~f~~e~~~r~~~~~~~~~~~~~~~~i~Dl~~i~~p~~~~ 89 (355)
T 3beh_A 17 LAAPGLLAVAALTIPDMSGRS-------RLALAALLAVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAF 89 (355)
T ss_dssp HHHHHHHHHHHHTSSSCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHCCCSCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchhhhH-------HHHHHHHHhHHHHHHHHHHHHhcccccccceeccCcchHHHHHHHHHHHHHH
Confidence 588999999999988765554 456777888888889999999999888888899999999999998 577653
Q ss_pred HHHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 81 LFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS 160 (306)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~ 160 (306)
+.. . .+.+|++|++|++|+.|+.+.++.+.+.+..+.+.+..++.+++++++++|+
T Consensus 90 ~~~----~--------------------~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~ 145 (355)
T 3beh_A 90 LLD----G--------------------SPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVAL 145 (355)
T ss_dssp HSC----C--------------------SGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 0 1234455555555666667778888888888888888888888888999999
Q ss_pred HHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 161 LAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYK 234 (306)
Q Consensus 161 ~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~ 234 (306)
++|..++..++++|.++++|+||+++|+||+||||++|.++.++++++++++.|++++++++|.+.+.+.+..+
T Consensus 146 ~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 219 (355)
T 3beh_A 146 AAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR 219 (355)
T ss_dssp HHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888889999999999999999999999999999999999999999999999999999998886443
No 5
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.95 E-value=1.7e-28 Score=209.13 Aligned_cols=200 Identities=18% Similarity=0.258 Sum_probs=158.2
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
+|++|++.+++++++..++. ...+..+|.++.++|.+|+++|+++++++++|++++||++|+++++++.+..
T Consensus 21 ~I~ln~i~l~~~~~~~~~~~--------~~~l~~~e~~~~~iF~~E~~lri~~~~~~~~y~~~~wni~D~~~v~~~~i~~ 92 (229)
T 4dxw_A 21 IIILNAVLIGATTYELDPLF--------LETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSGWNIFDTVIVAISLIPI 92 (229)
T ss_dssp HHHHHHHSTTTCCSSSCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHccCCCChHH--------HHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHhcCCcHHHHHHHHHHHHhhc
Confidence 57899999999997643333 4789999999999999999999999988889999999999999998877533
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~ 161 (306)
.. + ..++.+|++|++|++|+.|+.++++.+.+++.++.+++..+.+++++.+++||.+
T Consensus 93 ~~-----~-----------------~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~ 150 (229)
T 4dxw_A 93 PN-----N-----------------SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATM 150 (229)
T ss_dssp -----------------------------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-----c-----------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 2345677888888888888899999999999999999999999999999999999
Q ss_pred HhhhcccCCCCccCccchhhhhhhhhhccccccCCcc----CCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 162 AYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICP----TTPLGKM-IGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 162 ~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p----~~~~~~~-~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
++..+++.++++|+++++|+++.+.++|+.||+|+.. .++.+.+ +..+.++++++++|+++|++.+++++
T Consensus 151 g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 151 GAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225 (229)
T ss_dssp HHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998889999999999999999999999998622 2333444 44455556689999999999999985
No 6
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.86 E-value=2.1e-22 Score=159.62 Aligned_cols=85 Identities=32% Similarity=0.544 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 149 LFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNN 228 (306)
Q Consensus 149 l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~ 228 (306)
+.+++.+++++.+.|..|+..+++.+.++.+|+||+++|+|||||||++|.++.+|+++++++++|+++++++++.+.+.
T Consensus 57 ~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~ 136 (155)
T 2a9h_A 57 VLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATW 136 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677778888888778889999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q psy694 229 FAEFY 233 (306)
Q Consensus 229 ~~~~~ 233 (306)
+.+..
T Consensus 137 ~~~~~ 141 (155)
T 2a9h_A 137 FVGRE 141 (155)
T ss_dssp HHSCC
T ss_pred HHHHH
Confidence 88643
No 7
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.83 E-value=1.3e-20 Score=143.86 Aligned_cols=116 Identities=28% Similarity=0.483 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhh
Q psy694 108 VVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGIT 187 (306)
Q Consensus 108 ~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t 187 (306)
.+|.+|++|++|++ +.|+. ..+.. ..+......+++.+++++.+.+..|++.+++++.++.+|+||+++|
T Consensus 3 ~lr~lRl~Ri~ri~-L~R~~-------~~l~~--~~~~~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T 72 (122)
T 2ih3_C 3 PMLSGLLARLVKLL-LGRHG-------SALHW--RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACET 72 (122)
T ss_dssp -----------------------------CHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHhH-------HHHHH--HHHHHHHHHHHHHHHHHHHhhheeeecCCCCccCccccchhheeee
Confidence 35666666666666 44441 11111 1122223334445556677777888877788889999999999999
Q ss_pred hccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 188 MTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFY 233 (306)
Q Consensus 188 ~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~ 233 (306)
+||+||||++|.++.+|++++++++.|+.++++.++.+.+.+.+..
T Consensus 73 ~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 73 ATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp HTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888643
No 8
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.76 E-value=3.1e-18 Score=133.96 Aligned_cols=95 Identities=28% Similarity=0.527 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHH
Q psy694 142 KELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALP 221 (306)
Q Consensus 142 ~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~ 221 (306)
+.+....+++++.+++++++.+..+++.+++.++++.+|+||+++|+|||||||++|.++.+|+++++++++|+++++++
T Consensus 6 r~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~ 85 (139)
T 3eff_K 6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLV 85 (139)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777888888888877888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy694 222 IPIIVNNFAEFYKNQ 236 (306)
Q Consensus 222 i~~i~~~~~~~~~~~ 236 (306)
++.+.+.+.+..++.
T Consensus 86 ~~~i~~~~~~~~~~~ 100 (139)
T 3eff_K 86 TAALATWFVGREQER 100 (139)
T ss_dssp HHHHTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887755543
No 9
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=99.74 E-value=2.3e-18 Score=133.25 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=100.8
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
+|++|++.++++|++..++.. +..+..+|.++.++|++|+++|++++++|++|++ ||++|+++++|+++..
T Consensus 15 lIlls~~~~~~et~~~~~~~~-------~~~l~~~d~~~~~iFt~E~~lRl~~~~~~~~y~~--~niiDllailp~~~~~ 85 (132)
T 1ors_C 15 AALLSVIVVVVEYTMQLSGEY-------LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVK--KTLYEIPALVPAGLLA 85 (132)
T ss_dssp HHHHHHHHHHHHHHSCCCSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTT--TCGGGTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHH
Confidence 578999999999988766655 5789999999999999999999999999999999 9999999999999876
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 144 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l 144 (306)
.. + + ..+.+|++|++|++|++|+.|+.++++.+..++.++.+++
T Consensus 86 ~~-~-~-----------------~l~~lr~lRllRv~Rvlkl~r~~~~l~~l~~~l~~s~~~l 129 (132)
T 1ors_C 86 LI-E-G-----------------HLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129 (132)
T ss_dssp HH-H-H-----------------HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-c-c-----------------hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 55 1 0 1256788999999999999999999999999999888775
No 10
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.71 E-value=2.7e-17 Score=121.63 Aligned_cols=89 Identities=28% Similarity=0.367 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHH
Q psy694 145 GLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPI 224 (306)
Q Consensus 145 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~ 224 (306)
....+.+++.+++++.+.+..|+..+++.+.++.+|+||+++|+||+||||++|.++.+|++++++++.|+.++++.++.
T Consensus 9 l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~ 88 (103)
T 2k1e_A 9 QKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAA 88 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556667777788888777778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy694 225 IVNNFAEFY 233 (306)
Q Consensus 225 i~~~~~~~~ 233 (306)
+.+.+.+..
T Consensus 89 i~~~~~~~~ 97 (103)
T 2k1e_A 89 LATDFVRRE 97 (103)
T ss_dssp HHTTGGGHH
T ss_pred HHHHHHHHH
Confidence 998888543
No 11
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.66 E-value=5.2e-17 Score=126.31 Aligned_cols=77 Identities=35% Similarity=0.701 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 150 FLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNF 229 (306)
Q Consensus 150 ~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~ 229 (306)
+.++..+++++..++.+++ +++|.+|+||+++|+|||||||++|.++.||++++++++.|+++++++++.+.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~e~~-----~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~ 96 (137)
T 4h33_A 22 IFVLLVIIIPVPMVFIEPE-----INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFF 96 (137)
T ss_dssp HHHHHHHHTHHHHHHHCSS-----CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555565543 57899999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q psy694 230 AE 231 (306)
Q Consensus 230 ~~ 231 (306)
.+
T Consensus 97 ~~ 98 (137)
T 4h33_A 97 RC 98 (137)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 12
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.65 E-value=1.8e-15 Score=119.43 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy694 147 LMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIV 226 (306)
Q Consensus 147 ~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~ 226 (306)
..+.++++.+++++++|...++ +++.+|+||+++|+||+||||++|.++.+++++++++++|++++++.++.+.
T Consensus 29 ~~~~~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~ 102 (148)
T 3vou_A 29 VLFVLTFLTLTSGTIFYSTVEG------LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLA 102 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666654443 6899999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q psy694 227 NNF 229 (306)
Q Consensus 227 ~~~ 229 (306)
..+
T Consensus 103 ~~~ 105 (148)
T 3vou_A 103 VNV 105 (148)
T ss_dssp CCC
T ss_pred HHH
Confidence 643
No 13
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.60 E-value=3.5e-15 Score=112.13 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy694 148 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVN 227 (306)
Q Consensus 148 ~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~ 227 (306)
.+++++..+++++++|...++ +++.+|+||+++|+||+||||++|.++.+|++++++++.|+.++++.++.+.+
T Consensus 27 ~~~~~~~~~~~g~~~~~~~e~------~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~ 100 (114)
T 2q67_A 27 LFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666654443 68899999999999999999999999999999999999999999999999987
Q ss_pred HHHH
Q psy694 228 NFAE 231 (306)
Q Consensus 228 ~~~~ 231 (306)
.++.
T Consensus 101 ~~~~ 104 (114)
T 2q67_A 101 NVQL 104 (114)
T ss_dssp HHCC
T ss_pred HHHH
Confidence 7753
No 14
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.58 E-value=7.8e-17 Score=129.65 Aligned_cols=84 Identities=31% Similarity=0.551 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 153 MGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEF 232 (306)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~ 232 (306)
+.+++++++.+..+++.+++.++++.+|+||+++|+|||||||++|.++.+++++++++++|+++++++++.+.+.+.+.
T Consensus 44 ~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 44 IVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp TTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666777776777789999999999999999999999999999999999999999999999999998888764
Q ss_pred HHHH
Q psy694 233 YKNQ 236 (306)
Q Consensus 233 ~~~~ 236 (306)
.+++
T Consensus 124 ~~~~ 127 (166)
T 3pjs_K 124 EQQQ 127 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 15
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.54 E-value=2.1e-14 Score=104.72 Aligned_cols=79 Identities=24% Similarity=0.406 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q psy694 147 LMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIV 226 (306)
Q Consensus 147 ~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~ 226 (306)
..+.+++..++.++++|...++ +++.+|+||+++|+||+||||++|.++.+|++++++++.|+.++++.++.+.
T Consensus 9 ~~~~~~~~~~~~g~~~~~~~e~------~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~ 82 (97)
T 3ouf_A 9 VLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666654443 7899999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q psy694 227 NNFAE 231 (306)
Q Consensus 227 ~~~~~ 231 (306)
+.++.
T Consensus 83 ~~~~~ 87 (97)
T 3ouf_A 83 VNVQL 87 (97)
T ss_dssp HHTHH
T ss_pred HHHhH
Confidence 77763
No 16
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.51 E-value=4.1e-14 Score=99.85 Aligned_cols=70 Identities=30% Similarity=0.611 Sum_probs=59.0
Q ss_pred HHHHHHHHHHh-hhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 153 MGVLIFSSLAY-FAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNF 229 (306)
Q Consensus 153 ~~~~~~a~~~~-~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~ 229 (306)
+..++++..++ ..|+ +++.||+||+++|+||+||||++|.++.+|++++++++.|+.++++.++.+.+.+
T Consensus 11 ~~~~~~g~~~~~~~e~-------~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 11 LAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-------CCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555 4554 5889999999999999999999999999999999999999999999999887654
No 17
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=99.48 E-value=5.4e-14 Score=110.16 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
++++|++.+++++.+..+..+ .+.+..+|.++.++|++|+++|++.+++|++|+|+ |++|+++++|.+..+
T Consensus 30 lil~sv~~v~~et~~~i~~~~-------~~~~~~id~~~~~iF~~Ey~lRl~~a~~k~~f~~~--~iiDllailP~~~~~ 100 (147)
T 2kyh_A 30 AALLSVIVVVVEYTMQLSGEY-------LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLA 100 (147)
T ss_dssp HHHHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH--STTTHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHhHhhchhH-------HHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH--HHHHHHHHHHHHHHH
Confidence 477888999999887666555 57899999999999999999999999999999998 899999999998765
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRN 139 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~ 139 (306)
... ...+.+|++|++|++|++|+.+.....+++.+++..
T Consensus 101 ~~~-------------------~~lr~lRvlRllRv~Rllrl~r~~~~~~~l~~al~~ 139 (147)
T 2kyh_A 101 LIE-------------------GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIAD 139 (147)
T ss_dssp HHH-------------------HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 431 012566667777777777777766666665555543
No 18
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.39 E-value=8.4e-13 Score=116.87 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-CCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHH
Q psy694 137 LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKD-EHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGV 215 (306)
Q Consensus 137 ~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~-~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~ 215 (306)
+..+.+.+..+.+.+++++.+++++.|+.+++ ..+..+.++.+|+||+++|+||+||||++|.++.+++++++.+++|+
T Consensus 56 l~~~~~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~ 135 (333)
T 1p7b_A 56 LKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135 (333)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHH
Confidence 33344555555555545554455555766654 23334678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy694 216 LVIALPIPIIVNNFAE 231 (306)
Q Consensus 216 ~~~~~~i~~i~~~~~~ 231 (306)
+++++.+|.+.+.+.+
T Consensus 136 ~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 136 SGIALSTGLVFARFAR 151 (333)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888874
No 19
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.38 E-value=9.1e-13 Score=115.40 Aligned_cols=79 Identities=23% Similarity=0.449 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 152 AMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 152 ~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
++..++||++.+..++..++..+.++.+|+||+++|+||+||||++|.++.+++++++.+++|++++++.+|.+.+.++
T Consensus 58 ~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~ 136 (301)
T 1xl4_A 58 LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 136 (301)
T ss_dssp HHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444677777444433344456789999999999999999999999999999999999999999999999999988776
No 20
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.35 E-value=2.9e-12 Score=113.06 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhcccCCCCccC--ccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 153 MGVLIFSSLAYFAEKDEHDTKFV--SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~~~~f~--~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
+.+++||. ++.+++....++. ++.+|+||+++|+|||||||++|.+..+++++++.+++|++++++.+|.+.+.++
T Consensus 55 ~~~~~fa~--~~~eg~~~~~~~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~ 132 (321)
T 2qks_A 55 LLNTAFAT--LYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMS 132 (321)
T ss_dssp HHHHHHHH--HHHTSSSCBTTCSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHcCCccccCcCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455552 2455554445566 9999999999999999999999999999999999999999999999999998887
Q ss_pred H
Q psy694 231 E 231 (306)
Q Consensus 231 ~ 231 (306)
+
T Consensus 133 ~ 133 (321)
T 2qks_A 133 Q 133 (321)
T ss_dssp S
T ss_pred H
Confidence 4
No 21
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.23 E-value=8e-12 Score=109.07 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=53.2
Q ss_pred CccchhhhhhhhhhccccccCCccCCccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPTTPLGK------MIGSVCCVCGVLVIALPIPIIVNNFAEFY 233 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~~~~~~------~~~~~~il~g~~~~~~~i~~i~~~~~~~~ 233 (306)
+++.||+||+++|+|||||||++|.+..++ +++++++++|++++++.++.+.+.+....
T Consensus 223 ~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 223 WSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999998887 49999999999999999998877766543
No 22
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.22 E-value=2.6e-11 Score=104.25 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhh-hcccCCCCccCccchhhhhhhhhhccccccCCccCCccc-------hhHHHHHHHHHHHHHHHHH
Q psy694 151 LAMGVLIFSSLAYF-AEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLG-------KMIGSVCCVCGVLVIALPI 222 (306)
Q Consensus 151 ~~~~~~~~a~~~~~-~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~-------~~~~~~~il~g~~~~~~~i 222 (306)
+++..++.+..++. .|++ +++.||+||+++|+|||||||++|.++.+ |+++++++++|++++++++
T Consensus 181 ~~~~~~~~ga~~~~~~E~~------~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~ 254 (280)
T 3ukm_A 181 TVSCFFFIPAAVFSVLEDD------WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVL 254 (280)
T ss_dssp HHHHHTHHHHHHHHHHSSS------CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhcC------CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555554 4532 78999999999999999999999999864 9999999999999999999
Q ss_pred HHHHHHHHH
Q psy694 223 PIIVNNFAE 231 (306)
Q Consensus 223 ~~i~~~~~~ 231 (306)
+.+.+....
T Consensus 255 ~~i~~~~~~ 263 (280)
T 3ukm_A 255 ETFCELHEL 263 (280)
T ss_dssp HHHHTSHHH
T ss_pred HHHHHHHHH
Confidence 988766654
No 23
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.14 E-value=2.4e-10 Score=99.78 Aligned_cols=60 Identities=17% Similarity=0.457 Sum_probs=56.2
Q ss_pred CccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYK 234 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~~ 234 (306)
+++.+|+||+++|+|||||||++|.|..||+++++++++|+.+++++++.+.+.+.+..+
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~ 173 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLR 173 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999999999999999999999999999999999988876544
No 24
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.07 E-value=2.1e-12 Score=115.65 Aligned_cols=79 Identities=27% Similarity=0.532 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy694 148 MLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVN 227 (306)
Q Consensus 148 ~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~ 227 (306)
.++++++++++++++|...++ +++.+|+||+++|+||+||||++|.++.+|+++++++++|++++++.++.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~e~------~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 96 (336)
T 1lnq_A 23 ILLLVLAVIIYGTAGFHFIEG------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE 96 (336)
T ss_dssp STTTTTTSHHHHTTTTTTSSS------CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666644322 58889999999999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q psy694 228 NFAEF 232 (306)
Q Consensus 228 ~~~~~ 232 (306)
.+.+.
T Consensus 97 ~~~~~ 101 (336)
T 1lnq_A 97 FLINR 101 (336)
T ss_dssp TC---
T ss_pred HHHHH
Confidence 87763
No 25
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.07 E-value=5.2e-10 Score=106.94 Aligned_cols=57 Identities=30% Similarity=0.584 Sum_probs=51.6
Q ss_pred CccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPI-IVNNFAE 231 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~-i~~~~~~ 231 (306)
++|.+|+||+++|+||+||||++|.++.+++++++++++|++++++.++. +++.+.+
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 107 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLA 107 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999887 5555543
No 26
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.05 E-value=4.5e-10 Score=99.22 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHhhhc---ccCC---C-------CccCccchhhhhhhhhhccccccCCccC--CccchhHHHHHHH
Q psy694 148 MLFLAMGVLIFSSLAYFAE---KDEH---D-------TKFVSIPETFWWAGITMTTVGYGDICPT--TPLGKMIGSVCCV 212 (306)
Q Consensus 148 ~l~~~~~~~~~a~~~~~~~---~~~~---~-------~~f~~~~~a~y~~~~t~ttvGygd~~p~--~~~~~~~~~~~il 212 (306)
++..++..++||.++|... ++.. + .+..++.+|+||+++|+||+||||++|. ++.+++++.+.++
T Consensus 50 ~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l 129 (340)
T 3sya_A 50 VMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSV 129 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhccccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHH
Confidence 3334445556776666432 2210 0 2456899999999999999999999997 4678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy694 213 CGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 213 ~g~~~~~~~i~~i~~~~~~ 231 (306)
+|+++.++.+|.+.+.+++
T Consensus 130 ~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 130 LGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 9999999999999888874
No 27
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.02 E-value=7e-10 Score=95.38 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=55.0
Q ss_pred cCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 174 FVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFY 233 (306)
Q Consensus 174 f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~~~ 233 (306)
-+++.+|+||+++|+|||||||++|.|+.||+++++++++|+.++.+.++.+.+.+.+..
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~ 150 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV 150 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999998887776543
No 28
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.97 E-value=9.7e-10 Score=97.19 Aligned_cols=59 Identities=27% Similarity=0.423 Sum_probs=53.7
Q ss_pred ccCccchhhhhhhhhhccccccCCccC--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 173 KFVSIPETFWWAGITMTTVGYGDICPT--TPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 173 ~f~~~~~a~y~~~~t~ttvGygd~~p~--~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
+..++.+|+||+++|+||+||||++|. ++.+++++.+.+++|+++.++.+|.+.+.+++
T Consensus 91 ~~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 91 QVNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp TCCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999875 78899999999999999999999999888774
No 29
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=98.84 E-value=1.6e-09 Score=80.73 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCc--c---CCccchhHHHHHHHHH-
Q psy694 141 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDIC--P---TTPLGKMIGSVCCVCG- 214 (306)
Q Consensus 141 ~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~--p---~~~~~~~~~~~~il~g- 214 (306)
.+-+.++.+++++.+++||.++....++..|++|++++.|+...+..+|+.||.|.. | .++.+.++.+.++++|
T Consensus 3 ~~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~ 82 (112)
T 4f4l_A 3 HMGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTT 82 (112)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345677888899999999999999888888889999999999999999999997532 2 2344445555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy694 215 VLVIALPIPIIVNNFAEFYKNQ 236 (306)
Q Consensus 215 ~~~~~~~i~~i~~~~~~~~~~~ 236 (306)
++++|+++|++.+++++..+++
T Consensus 83 fi~lNLfiaVi~~~f~~~~~~~ 104 (112)
T 4f4l_A 83 FTVLNLFIGIIVDAMAITKEQE 104 (112)
T ss_dssp HHHHHHHTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998654433
No 30
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=95.06 E-value=0.28 Score=41.95 Aligned_cols=130 Identities=18% Similarity=0.102 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhcccc
Q psy694 113 RIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVG 192 (306)
Q Consensus 113 rllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvG 192 (306)
+.+|++|++|+.|..+..+.+..-..........+..++++.+.++-........-.++. ..+..+++.-++.++..+-
T Consensus 114 ~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~-~~~~F~s~~~a~~~~~~~~ 192 (285)
T 3rvy_A 114 EILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGER-FPEWFGTLGESFYTLFQVM 192 (285)
T ss_dssp THHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-cccccCCHHHHHHHHHHHH
Confidence 456777777777766655554433333223333333333333333322233333444332 2233456666776666555
Q ss_pred ccCCcc-CCccchhHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 193 YGDICP-TTPLGKMIG----SVCCVCGVLVI-ALPIPIIVNNFAEFYKNQMRREKAL 243 (306)
Q Consensus 193 ygd~~p-~~~~~~~~~----~~~il~g~~~~-~~~i~~i~~~~~~~~~~~~~~~~~~ 243 (306)
-++-++ .-.....-. ..+.+.-+++. -.+++..++.+.+...+..++++.+
T Consensus 193 T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~ 249 (285)
T 3rvy_A 193 TLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQH 249 (285)
T ss_dssp TTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454443 221011111 02222222232 3467777888887776655544433
No 31
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=94.76 E-value=0.25 Score=46.15 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy694 109 VQVFRIMRILRILKLARHSTGLQSLG 134 (306)
Q Consensus 109 l~~lrllRllR~~rl~~~~~~~~~l~ 134 (306)
++++|++|++|++|+.+..+..+.+.
T Consensus 305 ~~~lrvlRllRvlRilkL~r~~~~l~ 330 (514)
T 2r9r_B 305 RRVVQIFRIMRILRIFKLSRHSKGLQ 330 (514)
T ss_dssp HHHHHHHHHHGGGGGGGGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45677777777777777766655543
No 32
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=93.10 E-value=0.28 Score=40.47 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccc
Q psy694 112 FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTV 191 (306)
Q Consensus 112 lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttv 191 (306)
++.+|++|++|+.|..+..+.+..-.....+....+..+..+...++-........-.++.+ .+..+++..++.++..+
T Consensus 98 ~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~-~~~F~~~~~a~~~lf~~ 176 (229)
T 4dxw_A 98 FLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDD-PSRWGDLGISLITLFQV 176 (229)
T ss_dssp --CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-CTTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cccccCHHHHHHHHHHH
Confidence 45668899999988887776655444444444444444444444443333333444555543 33458888999999888
Q ss_pred cccCCccCCccc----hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy694 192 GYGDICPTTPLG----KMIGSVCCVCGVLVI-ALPIPIIVNNFAEFYKNQ 236 (306)
Q Consensus 192 Gygd~~p~~~~~----~~~~~~~il~g~~~~-~~~i~~i~~~~~~~~~~~ 236 (306)
-.||-.+.-... ..++.++.+.-+.+. -.+++..++.+.+..+++
T Consensus 177 ~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~ 226 (229)
T 4dxw_A 177 LTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQK 226 (229)
T ss_dssp HTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777755432211 112333322222222 245666676666655543
No 33
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=92.71 E-value=0.12 Score=51.00 Aligned_cols=55 Identities=18% Similarity=0.375 Sum_probs=44.4
Q ss_pred ccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 176 SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 176 ~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
++.+++|+++.++++.| ++..|.+..+|++..+|+++++++.+...|.+.+.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36689999999999988 78899999999999999999999999999999888874
No 34
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=88.27 E-value=0.25 Score=26.29 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhH
Q psy694 107 RVVQVFRIMRILRILKLARHSTGL 130 (306)
Q Consensus 107 ~~l~~lrllRllR~~rl~~~~~~~ 130 (306)
..++.+|.+|++|.+|.+..++++
T Consensus 4 ~~l~~lrtlR~LRpLr~isr~~gm 27 (28)
T 2lcm_A 4 NTIKSLRVLRVLRPLKTIKRLPKL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred chhhHHHHHHHhcchHHHhhcccC
Confidence 456778888888888887766553
No 35
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=83.01 E-value=2.8 Score=32.24 Aligned_cols=11 Identities=27% Similarity=0.202 Sum_probs=0.0
Q ss_pred chhHhHhhhhH
Q psy694 67 NVIDLLAIMPY 77 (306)
Q Consensus 67 ~~~D~~~~ip~ 77 (306)
+++|+++++|.
T Consensus 16 ~~~dli~~lp~ 26 (155)
T 2a9h_A 16 GRGRLIKHMPP 26 (155)
T ss_dssp -----------
T ss_pred hHHHHHHHHHH
Confidence 56888877776
No 36
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=82.20 E-value=8.6 Score=33.52 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy694 219 ALPIPIIVNNFAEFYKNQMRREK 241 (306)
Q Consensus 219 ~~~i~~i~~~~~~~~~~~~~~~~ 241 (306)
-.+++..++.+.+...++.++++
T Consensus 200 ~~~~~~~~~~i~~~~~~~~~~~~ 222 (355)
T 3beh_A 200 IGIFGLWAGILATGFYQEVRRGD 222 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777776666554433
No 37
>1qg9_A Protein (sodium channel protein, brain II alpha subunit); transmembrane sodium channel, structure, transmembrane channel; NMR {Synthetic} SCOP: j.35.1.1
Probab=69.01 E-value=2 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q psy694 37 EAVCITWFSVEYLLRLGASP 56 (306)
Q Consensus 37 ~~i~~~~F~~e~~l~~~~~~ 56 (306)
|+++..+|++|.++|+.+-+
T Consensus 3 e~~F~~IYtfE~liKi~ArG 22 (26)
T 1qg9_A 3 EYTFTGIYTFESLIKILARX 22 (26)
T ss_dssp SCCHHHHHHHHHHHHHHTC-
T ss_pred eEEeeHHHHHHHHHHHHHhh
Confidence 55789999999999998743
No 38
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=62.67 E-value=57 Score=25.99 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHH
Q psy694 110 QVFRIMRILRILKLARHSTGLQSLG 134 (306)
Q Consensus 110 ~~lrllRllR~~rl~~~~~~~~~l~ 134 (306)
+.+|.+|++|++|+.|..+..++..
T Consensus 97 ~~lr~lRllRllR~~r~~~~~~~~~ 121 (223)
T 1orq_C 97 GLFRLVRLLRFLRILLIISRGSKFL 121 (223)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777766655554443
No 39
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=57.35 E-value=12 Score=27.60 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHH
Q psy694 109 VQVFRIMRILRILKLARHSTGLQS 132 (306)
Q Consensus 109 l~~lrllRllR~~rl~~~~~~~~~ 132 (306)
++.+|.+|++|++|+.+..+..+.
T Consensus 91 l~~lr~lRllRv~Rvlkl~r~~~~ 114 (132)
T 1ors_C 91 LAGLGLFRLVRLLRFLRILLIISR 114 (132)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455666777777777665544433
No 40
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.58 E-value=43 Score=22.33 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy694 210 CCVCGVLVIALPIPIIVNNF 229 (306)
Q Consensus 210 ~il~g~~~~~~~i~~i~~~~ 229 (306)
-+++|++++++++-.+...+
T Consensus 16 gvi~gilliGllllliwk~~ 35 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLL 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666554444333
No 41
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=49.69 E-value=15 Score=27.87 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=11.7
Q ss_pred cchhHhHhhhhHHHHHH
Q psy694 66 LNVIDLLAIMPYYISLF 82 (306)
Q Consensus 66 ~~~~D~~~~ip~~~~~~ 82 (306)
+..+|.+++.-..+++.
T Consensus 54 ~~~id~~~~~iF~~Ey~ 70 (147)
T 2kyh_A 54 LYLVDLILVIILWADYA 70 (147)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55788877776666664
No 42
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=29.76 E-value=45 Score=30.69 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=24.7
Q ss_pred CccchhhhhhhhhhccccccC--CccCCccchhHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGD--ICPTTPLGKMIGSVCCVCG 214 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd--~~p~~~~~~~~~~~~il~g 214 (306)
+.+.+|++.++...||.||.. ...-++..+.+.++.|++|
T Consensus 305 ~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIG 346 (494)
T 3pjz_A 305 DAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIG 346 (494)
T ss_dssp HHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSC
T ss_pred HHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHc
Confidence 455677888888888889963 3333344455555555544
No 43
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=21.97 E-value=1.2e+02 Score=17.18 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 203 GKMIGSVCCVCGVLVIALPIPIIVNNFAE 231 (306)
Q Consensus 203 ~~~~~~~~il~g~~~~~~~i~~i~~~~~~ 231 (306)
+-++.+..+..+++++++.++.+.-.++.
T Consensus 4 ~EIf~~A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 4 EFIAGTALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 35677777788888889888888766653
No 44
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=21.49 E-value=60 Score=29.88 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=33.3
Q ss_pred ccchhhhhhhhhhccccc--cCCc----cCCccchhHHHHHHHHH-HHHHHHH
Q psy694 176 SIPETFWWAGITMTTVGY--GDIC----PTTPLGKMIGSVCCVCG-VLVIALP 221 (306)
Q Consensus 176 ~~~~a~y~~~~t~ttvGy--gd~~----p~~~~~~~~~~~~il~g-~~~~~~~ 221 (306)
++.+|+.=+..++.|+|- |.+. .-++.+|+..++.|+.| +..+++.
T Consensus 423 ~~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~GRLei~tvl 475 (494)
T 3pjz_A 423 DELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFGRLEIFTLL 475 (494)
T ss_dssp CHHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHHHTTTHHHH
T ss_pred cHHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 466888888889999885 3322 34567899999999988 4455553
Done!