Query psy694
Match_columns 306
No_of_seqs 175 out of 2248
Neff 9.3
Searched_HMMs 13730
Date Fri Aug 16 22:38:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r3jc_ f.14.1.1 (C:) Potassiu 99.8 3.5E-19 2.5E-23 130.0 10.7 90 143-232 7-96 (103)
2 d1orsc_ f.14.1.1 (C:) Potassiu 99.7 3E-17 2.2E-21 124.9 9.0 115 2-144 15-129 (132)
3 d1p7ba2 f.14.1.1 (A:36-151) In 99.6 5.5E-15 4E-19 109.8 8.6 78 153-230 38-115 (116)
4 d1xl4a2 f.14.1.1 (A:23-138) In 99.5 8.2E-15 6E-19 108.9 9.0 78 153-230 37-114 (116)
5 d1lnqa2 f.14.1.1 (A:19-98) Pot 99.3 4.7E-14 3.4E-18 97.3 -1.2 53 175-227 26-78 (80)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 99.2 8.8E-12 6.4E-16 78.3 5.9 52 142-193 6-57 (57)
7 d2p7tc1 f.14.1.1 (C:86-119) Po 57.5 9.1 0.00066 18.9 4.2 28 203-230 3-30 (34)
8 d1orsc_ f.14.1.1 (C:) Potassiu 48.4 36 0.0026 23.2 11.8 73 65-137 38-119 (132)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 29.9 73 0.0053 21.2 6.7 32 207-238 2-33 (158)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 5.0 2.4E+02 0.018 14.2 2.6 15 153-167 12-26 (37)
No 1
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.79 E-value=3.5e-19 Score=129.99 Aligned_cols=90 Identities=30% Similarity=0.528 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHH
Q psy694 143 ELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPI 222 (306)
Q Consensus 143 ~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i 222 (306)
.+.....++++.+++.+.+.+..|++.+++++.++++|+||+++|+||+||||++|.++.||++++++++.|++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~ 86 (103)
T d1r3jc_ 7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVT 86 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666677788888888888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy694 223 PIIVNNFAEF 232 (306)
Q Consensus 223 ~~i~~~~~~~ 232 (306)
+.+.+.+.+.
T Consensus 87 ~~i~~~~~~~ 96 (103)
T d1r3jc_ 87 AALATWFVGR 96 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888753
No 2
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=99.69 E-value=3e-17 Score=124.86 Aligned_cols=115 Identities=16% Similarity=0.226 Sum_probs=98.7
Q ss_pred ChhhHHHHHHHhccccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcccchhhhhccccchhHhHhhhhHHHHH
Q psy694 2 FIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISL 81 (306)
Q Consensus 2 ~i~~~~i~~~l~t~~~~~~~~~~~~~~~~~~~~i~~~i~~~~F~~e~~l~~~~~~~~~~y~~~~~~~~D~~~~ip~~~~~ 81 (306)
++++|++.++++|++..++++ ...+..+|.++.++|++|+++|+++++++++|.++ |++|+++++|.++..
T Consensus 15 lillnvi~~~let~~~~~~~~-------~~~l~~~e~v~~~iF~~E~~lrl~~~~~~~~~~~~--~~iDl~ai~p~~~~~ 85 (132)
T d1orsc_ 15 AALLSVIVVVVEYTMQLSGEY-------LVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK--TLYEIPALVPAGLLA 85 (132)
T ss_dssp HHHHHHHHHHHHHHSCCCSHH-------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTTT--CGGGTGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhccccchhh-------hHHHHHHHHHHHHHHHHHHHHHHHhCCccceeCCc--chHHHHHHHHHHHHH
Confidence 588999999999988777766 68999999999999999999999999998888754 889999999999876
Q ss_pred HHhhcCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q psy694 82 FLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL 144 (306)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~~~~~~~~~l 144 (306)
..... ...+|++|++|++|++|+.+..++.+.+..++.++.+++
T Consensus 86 ~~~~~-------------------~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~l 129 (132)
T d1orsc_ 86 LIEGH-------------------LAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129 (132)
T ss_dssp HHHHH-------------------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 54221 256788888899999999999999999999998887765
No 3
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=99.55 E-value=5.5e-15 Score=109.84 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 153 MGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
....+||.+.+..+++..+....++.+|+||+++|+||+||||++|.++.+++++++.++.|++++++.+|.+.+.++
T Consensus 38 ~~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~s 115 (116)
T d1p7ba2 38 VNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 115 (116)
T ss_dssp HHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcccCCCCCCCHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555444444444555678999999999999999999999999999999999999999999999999987764
No 4
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}
Probab=99.54 E-value=8.2e-15 Score=108.91 Aligned_cols=78 Identities=23% Similarity=0.460 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 153 MGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 153 ~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
.....|+.+.+..++...+.+..++.+|+||+++|+||+||||++|.++.+|+++++.++.|++++++.++.+.+.++
T Consensus 37 ~~~~~fa~~y~~~~~~~~~~~~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fs 114 (116)
T d1xl4a2 37 VTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 114 (116)
T ss_dssp HHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555556667789999999999999999999999999999999999999999999999999987765
No 5
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}
Probab=99.31 E-value=4.7e-14 Score=97.33 Aligned_cols=53 Identities=32% Similarity=0.607 Sum_probs=49.4
Q ss_pred CccchhhhhhhhhhccccccCCccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy694 175 VSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVN 227 (306)
Q Consensus 175 ~~~~~a~y~~~~t~ttvGygd~~p~~~~~~~~~~~~il~g~~~~~~~i~~i~~ 227 (306)
+++.||+||+++|+||+||||.+|.++.+|++++++++.|+.++++.++.+.+
T Consensus 26 ~s~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~ 78 (80)
T d1lnqa2 26 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE 78 (80)
T ss_dssp CCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred CCHHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999998887653
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=99.22 E-value=8.8e-12 Score=78.31 Aligned_cols=52 Identities=35% Similarity=0.620 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCccchhhhhhhhhhccccc
Q psy694 142 KELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGY 193 (306)
Q Consensus 142 ~~l~~~~l~~~~~~~~~a~~~~~~~~~~~~~~f~~~~~a~y~~~~t~ttvGy 193 (306)
|.+....+++++.++++|.+.|+.|++.++++|.++++|+||+++|+|||||
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY 57 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence 5667777888888888999999999999999999999999999999999998
No 7
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=57.48 E-value=9.1 Score=18.91 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 203 GKMIGSVCCVCGVLVIALPIPIIVNNFA 230 (306)
Q Consensus 203 ~~~~~~~~il~g~~~~~~~i~~i~~~~~ 230 (306)
||......|+.|+.-+++..+.+...|.
T Consensus 3 grcvavvvmvagits~glv~aa~atwfv 30 (34)
T d2p7tc1 3 GRCVAVVVMVAGITSFGLVTAALATWFV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeccchhhhHHHHHHHHhh
Confidence 5788889999999999998887776665
No 8
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=48.36 E-value=36 Score=23.15 Aligned_cols=73 Identities=11% Similarity=0.144 Sum_probs=38.2
Q ss_pred ccchhHhHhhhhHHHHHHHh----hcCCC-cchhhh---h-hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q psy694 65 GLNVIDLLAIMPYYISLFLL----ESNST-SNEQEV---Q-TRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGF 135 (306)
Q Consensus 65 ~~~~~D~~~~ip~~~~~~~~----~~~~~-~~~~~~---~-~~~~~~~~~~~~l~~lrllRllR~~rl~~~~~~~~~l~~ 135 (306)
.+..+|.+.+.-..+++..- +.... .-++.. + .+..-........+.+|.+|++|++|+.|..+..+....
T Consensus 38 ~l~~~e~v~~~iF~~E~~lrl~~~~~~~~~~~~~~iDl~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ 117 (132)
T d1orsc_ 38 RLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSK 117 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTTTCGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccceeCCcchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688988888777766431 11100 000000 0 000111223444667888888888888877666666543
Q ss_pred HH
Q psy694 136 TL 137 (306)
Q Consensus 136 ~~ 137 (306)
.+
T Consensus 118 ll 119 (132)
T d1orsc_ 118 FL 119 (132)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=29.91 E-value=73 Score=21.22 Aligned_cols=32 Identities=0% Similarity=0.123 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy694 207 GSVCCVCGVLVIALPIPIIVNNFAEFYKNQMR 238 (306)
Q Consensus 207 ~~~~il~g~~~~~~~i~~i~~~~~~~~~~~~~ 238 (306)
+.+-+++-+++++++.++.+=.+....++.+.
T Consensus 2 TLIELlVViaIIgILaaia~P~~~~~~~~a~~ 33 (158)
T d2pila_ 2 TLIELMIVIAIVGILAAVALPAYQDYTARAQV 33 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777777776666665544433
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=5.00 E-value=2.4e+02 Score=14.24 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhhcc
Q psy694 153 MGVLIFSSLAYFAEK 167 (306)
Q Consensus 153 ~~~~~~a~~~~~~~~ 167 (306)
++.+.|+.+.++...
T Consensus 12 ~Fw~FFagLi~YL~r 26 (37)
T d1eysh2 12 AFWLFFFGLIIYLRR 26 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455555555443
Done!