RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy694
(306 letters)
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 324 bits (832), Expect = e-109
Identities = 131/306 (42%), Positives = 185/306 (60%), Gaps = 31/306 (10%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPID-------------------NPKLAIVEAVCI 41
M I++S V+ L T+P + +++ + IVE +CI
Sbjct: 190 MVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCI 249
Query: 42 TWFSVEYLLRLGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQ 101
WFS E+L+R A P K FF +N+ID++AI+PYY+++FL ESN + Q
Sbjct: 250 IWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSV---------LQ 300
Query: 102 FQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161
FQ+VRRVVQ+FRIMRILRI KL+RHS GLQ LG TL+ S +ELGLL+ FL +GV++FSS
Sbjct: 301 FQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSA 360
Query: 162 AYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALP 221
YFAE DE D++F SIP+ FWWA ++MTTVGYGD+ PTT GK++GS+C + GVL IALP
Sbjct: 361 VYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALP 420
Query: 222 IPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKS--MDLIDV 279
+P+IV+NF FY + E+ + + K S +KS M++ +
Sbjct: 421 VPVIVSNFNYFYHRETEGEEQAQYLQVTSSPKIPSS-PDLKKSRSASTISKSDYMEIQEG 479
Query: 280 IVDTGE 285
+ ++ E
Sbjct: 480 VNNSNE 485
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 290 bits (744), Expect = 2e-97
Identities = 54/285 (18%), Positives = 100/285 (35%), Gaps = 30/285 (10%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
+ +A+ TIP + + + LA + AV + ++ L
Sbjct: 16 VLAAPGLLAVAALTIPDMSGRSRLA-------LAALLAVIWGAYLLQLAATLLKRRAGVV 68
Query: 61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
+ ID+LA++ + L + + + +
Sbjct: 69 RDRTPKIAIDVLAVLVPLAAFLLDG-----------------------SPDWSLYCAVWL 105
Query: 121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPET 180
LK R ST LG L N + L + + + + AY E+D KF SIP+
Sbjct: 106 LKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQA 165
Query: 181 FWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRRE 240
WWA +T++T GYGD P + G+++ + G+ + L I+ F + +
Sbjct: 166 MWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFVR 225
Query: 241 KALKRREAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVDTGE 285
K +++ LR + +I I + G+
Sbjct: 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGD 270
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 246 bits (630), Expect = 5e-82
Identities = 47/235 (20%), Positives = 97/235 (41%), Gaps = 30/235 (12%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
+LS + + + L + +L +V+ + + +Y R S +
Sbjct: 16 YAALLSVIVVVVECTMQLSGEYL-------VRLYLVDLILVIILWADYAYRAYKSGDPAG 68
Query: 61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
+ K L ++ A++P + + + +FR++R+LR
Sbjct: 69 YVKKTL--YEIPALVPAGLLAL-------------------IEGHLAGLGLFRLVRLLRF 107
Query: 121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIF--SSLAYFAEKDEHDTKFVSIP 178
L++ + + ++ ++ LF A+ + + + Y E + ++ S+
Sbjct: 108 LRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVF 167
Query: 179 ETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFY 233
+ WWA +T TTVGYGD+ P TP+GK+IG + G+ + L I + N F +
Sbjct: 168 DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKIL 222
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 182 bits (462), Expect = 1e-57
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 10/155 (6%)
Query: 101 QFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSS 160
+ + R++++L L RH + LQ ++ G + L + +L S
Sbjct: 2 HHHHHHPPMLSGLLARLVKLL-LGRHGSALQ---------WRAAGAATVLLVIVLLAGSY 51
Query: 161 LAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIAL 220
LA AE+ + ++ P WW+ T TTVGYGD+ P T G+++ V V G+ L
Sbjct: 52 LAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGL 111
Query: 221 PIPIIVNNFAEFYKNQMRREKALKRREAMERAKRE 255
+ F + Q ++ + A E R
Sbjct: 112 VTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRT 146
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 178 bits (453), Expect = 2e-56
Identities = 43/196 (21%), Positives = 68/196 (34%), Gaps = 43/196 (21%)
Query: 52 LGASPEKWKFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQV 111
+ S G L+ MP +
Sbjct: 1 MSGSHHHHHHSSGIEGRGRLIKHMP-------------------------------PMLS 29
Query: 112 FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHD 171
+ R++++L L RH + L ++ G + L + +L S LA AE+
Sbjct: 30 GLLARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPG 79
Query: 172 TKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231
+S P+ WW+ T TTVGYGD+ P T G+ + V V G+ L + F
Sbjct: 80 AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139
Query: 232 FYKNQMRREKALKRRE 247
Q RR ++ E
Sbjct: 140 RE--QERRGHFVRHSE 153
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 168 bits (428), Expect = 5e-53
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 112 FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHD 171
+ R++++L L RH + L ++ G + L + +L S LA AE+
Sbjct: 7 GLLARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGSYLAVLAERGAPG 56
Query: 172 TKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAE 231
+ ++ P WWA T TTV YGD+ P T G+++ V V G+ L + F
Sbjct: 57 AQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116
Query: 232 FYKNQ 236
+ +
Sbjct: 117 REQER 121
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 156 bits (396), Expect = 5e-48
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 140 SYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPT 199
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P
Sbjct: 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV 63
Query: 200 TPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIV 259
T G+++ V V G+ L + F Q RR ++ E +
Sbjct: 64 TLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE--QERRGHFVRHSEKAAEEAYTRTTR 121
Query: 260 SFHH 263
+ H
Sbjct: 122 ALHE 125
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 136 bits (344), Expect = 1e-40
Identities = 26/95 (27%), Positives = 39/95 (41%)
Query: 142 KELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTP 201
+E L + S A AE+ +S P+ WW+ T TTVGYGD P T
Sbjct: 6 REAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTE 65
Query: 202 LGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQ 236
G+ + G+ V AL + +F + +
Sbjct: 66 EGRKVAEQVMKAGIEVFALVTAALATDFVRREEER 100
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 112 bits (282), Expect = 3e-29
Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 12/192 (6%)
Query: 103 QDVRRVVQV---FRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFS 159
+ +R V + + +R+ + L + L+ + + L +LFL + F+
Sbjct: 3 KKRQRFVDKNGRCNVQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLL-NTAFA 61
Query: 160 SLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIA 219
+L + F+++ T+ TVGYGD+ P T I ++ G+ IA
Sbjct: 62 TLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIA 121
Query: 220 LPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLR-----DAFAKSM 274
L F + + + R E + A+ + + F NLR A +
Sbjct: 122 LATGCA---FIKMSQPKKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCK 178
Query: 275 DLIDVIVDTGEY 286
L GE+
Sbjct: 179 LLKSRQTPEGEF 190
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 101 bits (252), Expect = 7e-25
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 3/166 (1%)
Query: 84 LESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILR-ILKLARHSTGLQSLGFTLRNS-- 140
+ + S + RI R ++ ++ + L +
Sbjct: 1 MNVDPFSPHSSDSFAQAASPARKPPRGGRRIWSGTREVIAYGMPASVWRDLYYWALKVSW 60
Query: 141 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT 200
L + +F+ L + + F+++ T+ TVGYGD+ P T
Sbjct: 61 PVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQT 120
Query: 201 PLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRR 246
I ++ G+ IAL ++ FA M A+ R
Sbjct: 121 VYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKIMFARHAIVRP 166
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 97.4 bits (242), Expect = 9e-24
Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 12/176 (6%)
Query: 136 TLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGD 195
T+ + L+L +F+ + + S + F+++ TM T+GYG
Sbjct: 43 TVSWPVFITLITGLYLVTN-ALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK 101
Query: 196 ICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKRE 255
+ P PL + ++ +CG+L +A+ +I F L +
Sbjct: 102 LIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR------PTAGVLFSSRMVISDFEG 155
Query: 256 GSIVSFHHVNLR-----DAFAKSMDLIDVIVDTGEYEWVKVETHYHHVTSRELMWS 306
+ NLR +A + + I G + S S
Sbjct: 156 KPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIFSLS 211
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix}
SCOP: f.14.1.1
Length = 132
Score = 78.8 bits (194), Expect = 2e-18
Identities = 18/144 (12%), Positives = 50/144 (34%), Gaps = 28/144 (19%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
+LS + + + L + +L +V+ + + +Y R S +
Sbjct: 14 YAALLSVIVVVVEYTMQL-------SGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAG 66
Query: 61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
+ K + ++ A++P + + + +FR++R+LR
Sbjct: 67 YVKK--TLYEIPALVPAGLLA-------------------LIEGHLAGLGLFRLVRLLRF 105
Query: 121 LKLARHSTGLQSLGFTLRNSYKEL 144
L++ + + ++ +L
Sbjct: 106 LRILLIISRGSKFLSAIADAADKL 129
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane
protein; NMR {Aeropyrum pernix}
Length = 147
Score = 78.1 bits (192), Expect = 5e-18
Identities = 18/144 (12%), Positives = 50/144 (34%), Gaps = 28/144 (19%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
+LS + + + L + +L +V+ + + +Y R S +
Sbjct: 29 YAALLSVIVVVVEYTMQL-------SGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAG 81
Query: 61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
+ K + ++ A++P + + + +FR++R+LR
Sbjct: 82 YVKK--TLYEIPALVPAGLLA-------------------LIEGHLAGLGLFRLVRLLRF 120
Query: 121 LKLARHSTGLQSLGFTLRNSYKEL 144
L++ + + ++ +L
Sbjct: 121 LRILLIISRGSKFLSAIADAADKL 144
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 74.2 bits (182), Expect = 1e-16
Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 7/137 (5%)
Query: 122 KLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETF 181
+ L+ + ++K+ +LF+ + + S +++ + +
Sbjct: 3 SMLSFILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEGL-----RPLDAL 57
Query: 182 WWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREK 241
+++ +T+TTVG G+ P T GK+ + G+ ++ I + N + + K
Sbjct: 58 YFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNV--QLPSILSNRK 115
Query: 242 ALKRREAMERAKREGSI 258
+E ++ +I
Sbjct: 116 KETDAYRLEVMEKLEAI 132
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 75.2 bits (185), Expect = 1e-15
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 137 LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDI 196
L K +L L + V+I+ + + + E S + +W +T+ TVGYGD
Sbjct: 12 LPRVLKVPATRILLLVLAVIIYGTAGFHFIEGE------SWTVSLYWTFVTIATVGYGDY 65
Query: 197 CPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRR 246
P+TPLG V G+ A+ + ++ + ++ + +
Sbjct: 66 SPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVAKS 115
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 69.7 bits (171), Expect = 1e-15
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 146 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 205
+L L + V+I+ + + + E S + +W +T+ TVGYGD P TPLG
Sbjct: 4 TRILLLVLAVIIYGTAGFHFIEGE------SWTVSLYWTFVTIATVGYGDYSPHTPLGMY 57
Query: 206 IGSVCCVCGVLVIALPIPIIVNNF 229
V G+ A+ + ++
Sbjct: 58 FTCTLIVLGIGTFAVAVERLLEFL 81
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 63.7 bits (155), Expect = 5e-13
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 137 LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDI 196
LR + ++ L + LI ++ Y + + + +++ +T+TTVG G+
Sbjct: 16 LRAWKDKEFQVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGAGNF 69
Query: 197 CPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREK 241
P T GK+ + G+ ++ I + N +
Sbjct: 70 SPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR 114
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 62.5 bits (152), Expect = 9e-13
Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 146 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 205
++ L + LI ++ Y + + + +++ +T+TTVGYGD P T GK+
Sbjct: 8 QVLFVLTILTLISGTIFYSTVEG------LRPIDALYFSVVTLTTVGYGDFSPQTDFGKI 61
Query: 206 IGSVCCVCGVLVIALPIPIIVNNFAE--FYKNQMRR 239
+ G+ ++ I + N N + R
Sbjct: 62 FTILYIFIGIGLVFGFIHKLAVNVQLPSILSNLVPR 97
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 64.6 bits (158), Expect = 2e-12
Identities = 41/240 (17%), Positives = 90/240 (37%), Gaps = 43/240 (17%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
I+L+ V + T + + +++ +F +E L+R +K
Sbjct: 20 SIIILNAVLIGATTYELDPLFLET--------IHLLDYGITIFFVIEILIRFIGEKQKAD 71
Query: 61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
FFK G N+ D + + ISL + +NS+ V R++RI R+
Sbjct: 72 FFKSGWNIFDTVIVA---ISLIPIPNNSS-------------------FLVLRLLRIFRV 109
Query: 121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPET 180
L+L L+ + + S + + + L L + + I++++ ++ +++
Sbjct: 110 LRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRW----GD 165
Query: 181 FWWAGIT----MTTVGYGDICPTTPLGKMIGSVCCV-----CGVLVIALPIPIIVNNFAE 231
+ IT +T + + V C + ++ L I I+V+ +
Sbjct: 166 LGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ 225
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 62.8 bits (153), Expect = 1e-11
Identities = 36/265 (13%), Positives = 86/265 (32%), Gaps = 52/265 (19%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
IVL+ + + L T + + + IT F++E +LR+ +
Sbjct: 38 YLIVLNGITMGLETSKTF-------MQSFGVYTTLFNQIVITIFTIEIILRIYV--HRIS 88
Query: 61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
FFK ++ D + ISL ++ R++R+LR+
Sbjct: 89 FFKDPWSLFDFFVVA---ISLV---------------------PTSSGFEILRVLRVLRL 124
Query: 121 LKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPET 180
+L ++ + L + + ++ + + IF+ +A + F T
Sbjct: 125 FRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWF----GT 180
Query: 181 FWWAGITM---------TTVGYGDICPTTPLGKMI-GSVCCVCGVLVIALPIPIIVNNFA 230
+ T+ + + P + V ++I L + I V+
Sbjct: 181 LGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAM- 239
Query: 231 EFYKNQMRREKALKRREAMERAKRE 255
+ +++ + ++ +
Sbjct: 240 ----AILNQKEEQHIIDEVQSHEDN 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 4e-07
Identities = 47/325 (14%), Positives = 92/325 (28%), Gaps = 79/325 (24%)
Query: 5 LSTVALTLNTIPS-LQHKDKAGNPIDNPKLAIVEAVC----ITWFSVEYLLRLGASPEKW 59
S + L+ P L + NP +L+I+ TW + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPR---RLSIIAESIRDGLATW---DNWKHVNCDKLT- 356
Query: 60 KFFKGGLNVIDLLAIMPYYISLFLLESNS------------TSNEQEVQTRTDQFQDVRR 107
+ LNV++ + L + ++ + +V ++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YS 415
Query: 108 VVQ------VFRIMRILRILKLARHSTGLQSLGFTLRNSYKEL------GLLMLFLAMGV 155
+V+ I I L+L +L ++ + Y L+ +L
Sbjct: 416 LVEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-- 471
Query: 156 LIFSSLAYFAEKDEHDTKFVSIPETFW---WAGITMTTVGYGDICPTTPLGKMIGSVCCV 212
+S + + + EH + F + I + GS+
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--------QKIRHDSTAWNASGSILNT 523
Query: 213 CGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSF---HHVNLRDA 269
L +FYK + R +I+ F NL
Sbjct: 524 LQQL--------------KFYKPYICDNDPKYER-------LVNAILDFLPKIEENL--I 560
Query: 270 FAKSMDLIDVIVDTGEYEWVKVETH 294
+K DL+ + + E E + E H
Sbjct: 561 CSKYTDLLRIALMA-EDEAIFEEAH 584
Score = 32.5 bits (73), Expect = 0.18
Identities = 34/271 (12%), Positives = 74/271 (27%), Gaps = 73/271 (26%)
Query: 60 KFFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVR----RVVQVFRIM 115
KF + L Y FL+ T Q T + + R QVF
Sbjct: 81 KFVEEVLR--------INYK--FLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 116 RILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMG-----VLIFSSLAYFAEKDEH 170
+ R+ + L L + +++ + + + + +
Sbjct: 130 NVSRLQPYLKLRQALLEL--------RPAKNVLID-GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 171 DTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230
D K FW + + + + +M+ + P ++ +
Sbjct: 181 DFK------IFW---LNL-----KNCNSPETVLEMLQKLL------YQIDPNWTSRSDHS 220
Query: 231 EFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRD--------AFA---------KS 273
K ++ +A RR + +V L + AF +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLV------LLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 274 MDLIDVIVDTGEYEWVKVETHYHHVTSRELM 304
+ D + + ++ H +T E+
Sbjct: 275 KQVTDFLSAATTTH-ISLDHHSMTLTPDEVK 304
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 46.7 bits (110), Expect = 4e-06
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 18/139 (12%)
Query: 144 LGLLMLFLAMGVLIFSSLAYFAEKDEHD-------------TKFVSIPETFWWAGITMTT 190
L + ++ + L F + + D T F ++ T TT
Sbjct: 46 LLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETT 105
Query: 191 VGYGDICPT--TPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREA 248
+GYG T P G ++ + V G +V A + + F + + + R E + A
Sbjct: 106 IGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCM---FVKISQPKKRAETLVFSTHA 162
Query: 249 MERAKREGSIVSFHHVNLR 267
+ + + F +LR
Sbjct: 163 VISMRDGKLCLMFRVGDLR 181
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 39.7 bits (92), Expect = 6e-04
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 145 GLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPT--TPL 202
GL+ +A+ + + F ++ T TT+GYG C T PL
Sbjct: 63 GLIFWLIALIHGDLENPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTEECPL 122
Query: 203 GKMIGSVCCVCGVLVIALPIPIIVNNFA 230
+ V + G ++ + I I+ A
Sbjct: 123 AVFMVVVQSIVGCIIDSFMIGAIMAKMA 150
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 38.3 bits (88), Expect = 0.002
Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 5/146 (3%)
Query: 155 VLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCG 214
VL S+ ++A ++T GYG P + GK + V G
Sbjct: 72 VLEASNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIG 131
Query: 215 VLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSM 274
+ L + +V + ++ + + +
Sbjct: 132 IPFTLLFLTAVVQRITVHVTRRPVL-----YFHIRWGFSKQVVAIVHAVLLGFVTVSCFF 186
Query: 275 DLIDVIVDTGEYEWVKVETHYHHVTS 300
+ + E +W +E+ Y S
Sbjct: 187 FIPAAVFSVLEDDWNFLESFYFCFIS 212
Score = 36.7 bits (84), Expect = 0.006
Identities = 14/78 (17%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 176 SIPETFWWAGITMTTVGYGDICPTTPLGKM---IGSVCCVCGVLVIALPIPIIVNNFAEF 232
+ E+F++ I+++T+G GD P + + + C +L+ + + +++ F E
Sbjct: 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCEL 260
Query: 233 YKNQMRREKALKRREAME 250
++ + R+ +++ E
Sbjct: 261 HELKKFRKMFYVKKDKDE 278
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 36.3 bits (83), Expect = 0.009
Identities = 11/74 (14%), Positives = 35/74 (47%)
Query: 176 SIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKN 235
+ F+++G +TT+GYG++ T G++ + G+ + + + + + ++
Sbjct: 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRH 174
Query: 236 QMRREKALKRREAM 249
+ +A+ + +
Sbjct: 175 GIGHIEAIFLKWHV 188
Score = 36.3 bits (83), Expect = 0.009
Identities = 24/153 (15%), Positives = 43/153 (28%), Gaps = 17/153 (11%)
Query: 102 FQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFTLRNSYKELGLLMLFLAMGVLIFSSL 161
V + I I + L L L +LF+ +F +
Sbjct: 161 LAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYM 220
Query: 162 AYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTT------PLGKMIGSVCCVCGV 215
D + E ++ +T+TTVG+GD P + + + G+
Sbjct: 221 --------EDWSKL---EAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGL 269
Query: 216 LVIALPIPIIVNNFAEFYKNQMRREKALKRREA 248
A + I N + L +
Sbjct: 270 AYFASVLTTIGNWLRVVSRRTRAEMGGLTAQSN 302
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.031
Identities = 60/336 (17%), Positives = 98/336 (29%), Gaps = 115/336 (34%)
Query: 34 AIVEAVCITWFSVEYLLRLGASPEKW-KFFKGGLNVIDLL---AIMP--YYISLFLLESN 87
+V + S E L L + K F GLN+++ L + P Y L S
Sbjct: 182 VLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-----LLSI 234
Query: 88 STSNEQEVQTRTDQFQDVRRVVQVFRIMRILRILKLARHSTGLQSLGFT---LRNSYKEL 144
S ++ +++LA + + LGFT LR+ K
Sbjct: 235 PIS------------------------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 145 -----GLLM-LFLAMGVLIFSSLAYFAEKDEHDTKFVSI------------PETFWWAGI 186
GL+ + +A S F K +++ P T I
Sbjct: 271 TGHSQGLVTAVAIAET----DSWESF---FVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 187 TMTTVGYGDICPTTP-----------LGKMIGSVCC---VCGVLVIALPIPIIVN---NF 229
++ + P +P + + + I+L VN N
Sbjct: 324 LEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-----VNGAKNL 377
Query: 230 ------AEFY--KNQMRREKALK-----RREAMERAKREGSI----VS--FHHVNLRDAF 270
Y +R+ KA R ER K + S V+ FH L A
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER-KLKFSNRFLPVASPFHSHLLVPA- 435
Query: 271 AKSMDLIDVIVDTGEYEWVKVETH---YHHVTSREL 303
DLI+ + + + Y +L
Sbjct: 436 ---SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.068
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 226 VNNFAEFYKNQMRREKALKRREAME-RAKREGSIV 259
+ + + Q+ + K R + + I+
Sbjct: 120 LEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 0.75
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 9/40 (22%)
Query: 236 QMRREKALKRREAMERAKREGSIVSFHHVNLRDAFAKSMD 275
+ + K L+ +A + + R+ K ++
Sbjct: 91 REEQRKRLQELDAASKVMEQ---------EWREKAKKDLE 121
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose
metabolic process, PFKB family,11206G, PSI-II, NYSGXRC,
structural genomics; HET: ATP; 1.79A {Escherichia coli
O6} PDB: 3k9e_A
Length = 330
Score = 32.6 bits (75), Expect = 0.15
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVI 280
++A+ K G ++SF N+R ++ D +
Sbjct: 151 KKAVTIVKANGGVISF-DPNIRKEMLDIPEMRDAL 184
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.33
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 13 NTIPSLQHKDKAGNPIDN-PKLAIVEAVCITWFSVE 47
+ LQ K D+ P LAI +A ++E
Sbjct: 20 QALKKLQASLKLYAD-DSAPALAI-KA------TME 47
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 31.5 bits (72), Expect = 0.34
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAFAKSMD 275
E M RA+ G+IVSF +N R + +
Sbjct: 150 FEGMRRAQAAGAIVSF-DLNFRPMLWPNGE 178
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 31.4 bits (72), Expect = 0.38
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 225 IVNNFAEFYKNQMRRE-----KALKR-REAMERAKREGSIVSFHHVNLRDAFAKSMDLID 278
+V++ AE +K + +++ +A++R R A ERAKR S + + + D+ + +D
Sbjct: 258 MVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEI-DSLYEGVDFYT 316
Query: 279 VI 280
I
Sbjct: 317 SI 318
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 30.9 bits (71), Expect = 0.49
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 225 IVNNFAEFYKNQMRRE-----KALKR-REAMERAKREGSIVSFHHVNLRDAFAKSMDLID 278
IV + +K + + KAL + + E+AKR S + + D+F +DL +
Sbjct: 250 IVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEI-DSFVDGIDLSE 308
Query: 279 VI 280
+
Sbjct: 309 TL 310
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 30.9 bits (71), Expect = 0.49
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 225 IVNNFAEFYKNQMRRE-----KALKR-REAMERAKREGSIVSFHHVNLRDAFAKSMDLID 278
+VN+F +K + +++ +A++R R A ERAKR S + + + D+ + +D
Sbjct: 237 MVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI-DSLYEGIDFYT 295
Query: 279 VI 280
I
Sbjct: 296 SI 297
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 30.3 bits (69), Expect = 0.66
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAFAKSMDLI 277
E +AK I+ ++ +++D I
Sbjct: 156 TEIFTQAKARQMIICA--DMIKPRLNETLDDI 185
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 29.9 bits (68), Expect = 0.99
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAFAKSMD 275
E R + G V F VNLR + D
Sbjct: 162 LEGARRMREAGGYVLF-DVNLRSKMWGNTD 190
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc, transferase; 2.70A
{Polaromonas SP}
Length = 336
Score = 29.5 bits (67), Expect = 1.4
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 246 REAMERAKREGSIVSFHHVNLR 267
R+ M+ + G VSF NLR
Sbjct: 174 RKTMDLMRAAGRSVSF-DPNLR 194
>3i0p_A Malate dehydrogenase; araerobic parasitic protozoan, amoebic
dysentery, ssgcid, NI infectious disease, structural
genomics; HET: NAD; 2.60A {Entamoeba histolytica}
Length = 365
Score = 29.3 bits (66), Expect = 1.7
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 22 DKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWKFFKG-GLN-VIDLLA 73
K G PI++PK E + YL LG S E KG L+ +++++
Sbjct: 209 MKGGKPIEDPK----ELLENYPKGKAYLHPLGGSDEVSGSHKGYCLSEFVEIMS 258
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics,
transferase, riken structural genomics/proteomics
initiative, RSGI; HET: KDG ADP; 2.1A {Thermus
thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Length = 309
Score = 29.1 bits (66), Expect = 1.8
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVI 280
AME AKR G VS VN R + +
Sbjct: 147 LWAMEEAKRRGVRVSL-DVNYRQTLWSPEEARGFL 180
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 29.1 bits (66), Expect = 1.8
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAFAKSMD 275
+A A+ +G IV F R D
Sbjct: 165 IKAFNYAREQGKIVCF-DPCYRKVLWPEGD 193
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 28.7 bits (65), Expect = 2.3
Identities = 5/22 (22%), Positives = 8/22 (36%), Gaps = 1/22 (4%)
Query: 246 REAMERAKREGSIVSFHHVNLR 267
+ + +G V F N R
Sbjct: 152 LSLLRECRAKGGKVIF-DNNYR 172
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto-
gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus
tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Length = 311
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAFAKSMDLIDVIVD 282
+EA+ +A S SF N+R + + I+
Sbjct: 146 KEAVYKAFEIASNRSF-DTNIRLKLWSAEEAKREILK 181
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme
function initiative, EFI, STRU genomics, transferase;
1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Length = 328
Score = 28.7 bits (65), Expect = 2.4
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAF 270
A+ +A+ G ++F NLR
Sbjct: 168 LRALAQARATGRTIAF-DPNLRPRL 191
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 28.6 bits (65), Expect = 2.5
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 206 IGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSFHHVN 265
IGS + L+ A +P++++NF ++ ++L+R + + G V F ++
Sbjct: 14 IGSHTVLE--LLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-----TGRSVEFEEMD 66
Query: 266 LRDA 269
+ D
Sbjct: 67 ILDQ 70
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 28.8 bits (65), Expect = 2.6
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 225 IVNNFA-EF---YKNQMRRE-KALKR-REAMERAKREGS 257
I +FA EF YK +R KA R A E+ K+ S
Sbjct: 241 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLS 279
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Length = 332
Score = 28.3 bits (64), Expect = 2.8
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 246 REAMERAKREGSIVSFHHVNLRDAF 270
+A+ AKR V F ++ R
Sbjct: 159 LKAIRLAKRNDVKVVF-ELDYRPYS 182
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein,
transferase, claisen condensatio acid biosynthesis;
2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A*
3mi3_A*
Length = 423
Score = 28.4 bits (64), Expect = 2.9
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 233 YKNQMRREKALKR-REAMERAKREGSIVSF 261
Y + + E + K +G V F
Sbjct: 140 YSHGKDMTYIIDSATEVINFVKSKGIEVRF 169
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 3.0
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 196 ICPT--TPLGKMI-----GS-VCCVCGVLVIA 219
CP K++ G VC +CG LV++
Sbjct: 23 TCPECKVYPPKIVERFSEGDVVCALCG-LVLS 53
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Length = 201
Score = 27.6 bits (62), Expect = 3.7
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 57 EKWKFFKGGLNVIDL 71
K+ F K ++D+
Sbjct: 15 NKYLFLKKNKIILDI 29
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET:
SAM; 1.76A {Homo sapiens}
Length = 196
Score = 27.5 bits (62), Expect = 4.4
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 57 EKWKFFKGGLNVIDL 71
E+ + + GL V+D
Sbjct: 15 ERHQILRPGLRVLDC 29
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3-
deoxygluconokinase, PFKB family carbohy kinase,
structural genomics; 2.05A {Thermotoga maritima} SCOP:
c.72.1.1
Length = 351
Score = 27.7 bits (62), Expect = 4.5
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 246 REAMERAKREGSIVSFHHVNLR 267
+A++ A +G VS +N R
Sbjct: 160 EDALKVANEKGVTVSC-DLNYR 180
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 27.9 bits (63), Expect = 4.5
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 225 IVNNFA-EFYKNQ---MRREK-ALKR-REAMERAKREGSIVSFHHVNL 266
++N EF K+Q +R + A++R +EA E+AK E S VNL
Sbjct: 236 LINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 28.0 bits (63), Expect = 4.7
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 225 IVNNFA-EFYKNQ---MRREK-ALKR-REAMERAKREGSIVSFHHVNL 266
++N EF K+Q +R + A++R +EA E+AK E S VNL
Sbjct: 236 LINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNL 283
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 27.4 bits (62), Expect = 5.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 57 EKWKFFKGGLNVIDL 71
+ K FK G+ V+DL
Sbjct: 15 QSDKLFKPGMTVVDL 29
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 27.9 bits (63), Expect = 5.0
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 230 AEFYKNQ---MRREK-ALKR-REAMERAKREGSIVSFHHVNL 266
+F + + ++K AL+R ++A E+AK+E S V+ ++L
Sbjct: 211 NQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISL 252
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 27.1 bits (61), Expect = 5.5
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 57 EKWKFFKGGLNVIDL 71
++++ + G VI++
Sbjct: 18 DRYRVVRKGDAVIEI 32
>3ktn_A Carbohydrate kinase, PFKB family; PFKB
family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II,
NYSGXRC,, structural genomics; 2.26A {Enterococcus
faecalis}
Length = 346
Score = 27.3 bits (61), Expect = 6.3
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 1/22 (4%)
Query: 246 REAMERAKREGSIVSFHHVNLR 267
++A V F N R
Sbjct: 151 LILAQKAHAYQKKVCF-DFNYR 171
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 27.4 bits (61), Expect = 6.8
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 158 FSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGV 215
S L + F + E + V CP G+ + ++C CG
Sbjct: 56 HSELDVRTAGAAGTSGFFCVDEGRLPHTQRLLEVISVCDCPR---GRFLAAICQDCGR 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,821,299
Number of extensions: 290026
Number of successful extensions: 997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 65
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)