RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy694
(306 letters)
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 92.3 bits (229), Expect = 3e-24
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 140 SYKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPT 199
++ G + L + +L S LA AE+ + ++ P WW+ T TTVGYGD+ P
Sbjct: 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV 63
Query: 200 TPLGKMIGSVCCVCGVLVIALPIPIIVNNFAEFYKNQMRR 239
T G+ + V V G+ L + F + Q RR
Sbjct: 64 TLWGRCVAVVVMVAGITSFGLVTAALATWFVG--REQERR 101
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 82.3 bits (203), Expect = 2e-20
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 120 ILKLARHSTGLQSLGFT--LRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDE-HDTKFVS 176
I +L G + L S+ L+ L + +LAY A D + + S
Sbjct: 1 ITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGS 60
Query: 177 IPETFWWAGITMTTVGYGDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230
+ F+++ TM T+GYG + P PL + ++ +CG+L +A+ +I F
Sbjct: 61 FTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 114
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 77.6 bits (191), Expect = 3e-19
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 141 YKELGLLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGY 193
++ G + L + +L S LA AE+ + ++ P WWA T TTVGY
Sbjct: 5 WRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY 57
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 70.8 bits (173), Expect = 4e-16
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
Query: 135 FTLRNSYKELGLLMLFLAMGVLIFSSLAYFAEKDEH-DTKFVSIPETFWWAGITMTTVGY 193
+ L+ S+ + L + +L Y + F+++ T+ TVGY
Sbjct: 19 WALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGY 78
Query: 194 GDICPTTPLGKMIGSVCCVCGVLVIALPIPIIVNNFA 230
GD+ P T I ++ G+ IAL ++ FA
Sbjct: 79 GDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA 115
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 69.0 bits (169), Expect = 9e-16
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 146 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 205
+L L + V+I+ + + + E S + +W +T+ TVGYGD P+TPLG
Sbjct: 3 TRILLLVLAVIIYGTAGFHFIEGE------SWTVSLYWTFVTIATVGYGDYSPSTPLGMY 56
Query: 206 IGSVCCVCGVLVIALPIPIIVN 227
V G+ A+ + ++
Sbjct: 57 FTVTLIVLGIGTFAVAVERLLE 78
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 58.8 bits (142), Expect = 1e-11
Identities = 18/144 (12%), Positives = 49/144 (34%), Gaps = 28/144 (19%)
Query: 1 MFIVLSTVALTLNTIPSLQHKDKAGNPIDNPKLAIVEAVCITWFSVEYLLRLGASPEKWK 60
+LS + + + L +L +V+ + + +Y R S +
Sbjct: 14 YAALLSVIVVVVEYTMQLSG-------EYLVRLYLVDLILVIILWADYAYRAYKSGDPAG 66
Query: 61 FFKGGLNVIDLLAIMPYYISLFLLESNSTSNEQEVQTRTDQFQDVRRVVQVFRIMRILRI 120
+ K + ++ A++P + + + +FR++R+LR
Sbjct: 67 YVK--KTLYEIPALVPAGLLAL-------------------IEGHLAGLGLFRLVRLLRF 105
Query: 121 LKLARHSTGLQSLGFTLRNSYKEL 144
L++ + + ++ +L
Sbjct: 106 LRILLIISRGSKFLSAIADAADKL 129
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate
oxidase 1 {Petunia hybrida [TaxId: 4102]}
Length = 307
Score = 27.6 bits (60), Expect = 1.7
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 4/125 (3%)
Query: 146 LLMLFLAMGVLIFSSLAYFAEKDEHDTKFVSIPETFWWAGITMTTVGYGDICPTTPLGKM 205
LL L + + Y ++ TK + P I
Sbjct: 130 LLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDD 189
Query: 206 IGSVCCVC----GVLVIALPIPIIVNNFAEFYKNQMRREKALKRREAMERAKREGSIVSF 261
S + + V + I+VN + + K++ R ++ S+ SF
Sbjct: 190 KVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASF 249
Query: 262 HHVNL 266
++
Sbjct: 250 YNPGS 254
>d1xr4a1 c.124.1.2 (A:1-236) Putative citrate lyase alpha chain,
citF2 {Salmonella typhimurium [TaxId: 90371]}
Length = 236
Score = 25.8 bits (57), Expect = 6.0
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 238 RREKALKR-REAMERAK-REGSIVSFHHVNLRDAFAKSMDLIDVIVDTG 284
RR K EA+ R+ + G +SFHH R ++ + + G
Sbjct: 38 RRRKICDSLEEAIRRSGLKNGMTISFHH-AFRGGDKVVNMVMAKLAEMG 85
>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain
{Human (Homo sapiens), blood isozyme [TaxId: 9606]}
Length = 320
Score = 25.2 bits (55), Expect = 10.0
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 233 YKNQMRREKALKRREAMERAKREGS 257
YK Q E + R A+E A G+
Sbjct: 291 YKFQ---EGQEEERLALETALMYGA 312
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.418
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,157,145
Number of extensions: 51721
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 14
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)