BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6940
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
P GGQ +RVSIA L P +++ DEPTS LDP L R + +L+ +G+T+++ T
Sbjct: 151 PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVT 210
Query: 84 H------------------YIEEARQANTVFGGFFAPKLHLSLNES 111
H IEE VFG +P+L L S
Sbjct: 211 HEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGS 256
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
P+ GGQ +RV+IA L P +++ DEPTS LDP + + +L+ +G T+++ T
Sbjct: 136 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 195
Query: 84 HYIEEARQ 91
H + AR+
Sbjct: 196 HEMGFARE 203
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
P+ GGQ +RV+IA L P +++ DEPTS LDP + + +L+ +G T+++ T
Sbjct: 157 PDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVT 216
Query: 84 HYIEEARQ 91
H + AR+
Sbjct: 217 HEMGFARE 224
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 4 LLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
L+ AE+ R FA K PN GGQ +RV+IA L ++P +++ DEPT LD
Sbjct: 128 CLKXAELEER---FANHK--PNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGE 182
Query: 64 IFWRYLNRLSVQ-GQTIIITTHYIEEAR 90
+ L +L+ + G+T+++ TH I AR
Sbjct: 183 KIXQLLKKLNEEDGKTVVVVTHDINVAR 210
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 16 DF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV 74
DF + + +P + GG+ RRV+IA ++H P ++ILDEP GLD R + +
Sbjct: 127 DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 75 QGQTIIITTHYIE 87
G+T+I+ +H IE
Sbjct: 187 LGKTVILISHDIE 199
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 16 DF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV 74
DF + + +P + GG+ RRV+IA ++H P ++ILDEP GLD R + +
Sbjct: 129 DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 188
Query: 75 QGQTIIITTHYIE 87
G+T+I+ +H IE
Sbjct: 189 LGKTVILISHDIE 201
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 4 LLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
L+ AE+ R FA K PN GGQ +RV+IA L ++P +++ D+PT LD
Sbjct: 128 CLKMAELEER---FANHK--PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGE 182
Query: 64 IFWRYLNRLSVQ-GQTIIITTHYIEEAR 90
+ L +L+ + G+T+++ TH I AR
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINVAR 210
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GQ +RV+IA L+ P ++ILDEPT+GLDP+ + + L + + G TIII TH I+
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 4 LLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
L+ AE+ R FA K PN GGQ +RV+IA L ++P +++ D+PT LD
Sbjct: 128 CLKMAELEER---FANHK--PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 64 IFWRYLNRLSVQ-GQTIIITTHYIEEAR 90
+ L +L+ + G+T+++ TH I AR
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINVAR 210
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL +P +++LDE TS LD + L+RL + G+T+++ H++
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHHLST 575
Query: 89 ARQANTV 95
+ AN V
Sbjct: 576 IKNANMV 582
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
G VR++ IA L+ +P L ILDEPTSGLD + A + L + S +G TI++++H
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL +P +++LDE TS LD + L+RL + G+T+++ H +
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHRLST 544
Query: 89 ARQANTV 95
+ AN V
Sbjct: 545 IKNANMV 551
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II H +
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLST 202
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 203 VKNADRII 210
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II H +
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLST 200
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 201 VKNADRII 208
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II H +
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLST 206
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 207 VKNADRII 214
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II H +
Sbjct: 144 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLST 202
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 203 VKNADRII 210
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ +P +++LDE TS LD I + L++ + +G+T II H +
Sbjct: 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK-AAKGRTTIIIAHRLST 615
Query: 89 ARQANTV 95
R A+ +
Sbjct: 616 IRNADLI 622
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ +P +++LDE TS LD + L+R + +G+T I+ H +
Sbjct: 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-AREGRTCIVIAHRLNT 1278
Query: 89 ARQANTV 95
A+ +
Sbjct: 1279 VMNADCI 1285
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ++ V I L+ +P ++++DEP +G+ P LA+ + ++ L +G T +I H ++
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ++ V I L+ +P ++++DEP +G+ P LA+ + ++ L +G T +I H ++
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ +P +++LDE TS LD + L++ + +G+T I+ H +
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLST 587
Query: 89 ARQANTVFG 97
R A+ + G
Sbjct: 588 VRNADVIAG 596
Score = 42.7 bits (99), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ P +++LDE TS LD + L++ + +G+T I+ H +
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLST 1232
Query: 89 ARQANTV 95
+ A+ +
Sbjct: 1233 IQNADLI 1239
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ +P +++LDE TS LD + L++ + +G+T I+ H +
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLST 587
Query: 89 ARQANTVFG 97
R A+ + G
Sbjct: 588 VRNADVIAG 596
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ P +++LDE TS LD + L++ + +G+T I+ H +
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREGRTCIVIAHRLST 1232
Query: 89 ARQANTV 95
+ A+ +
Sbjct: 1233 IQNADLI 1239
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 1 MSLLLRPAEILTRTRDFALRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGL 57
M + P +L RD + LL P GG+ +RV++A L+ +P +++LDEP S L
Sbjct: 99 MKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 58 DPVLANIFWRYLNRLSVQGQ-TIIITTHYIEEAR 90
DP L+ L + + T++ TH EAR
Sbjct: 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEAR 192
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ++ V I L+ +P ++++D+P +G+ P LA+ + ++ L +G T +I H ++
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II +
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAARLST 200
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 201 VKNADRII 208
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II +
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAARLST 206
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 207 VKNADRII 214
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ +R++IA L + LDEP S LDP ++ L L +G+ II+ TH +E
Sbjct: 143 GGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELE 201
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P GGQ +RV+I TL+ PS+ +LDEP S LD L ++RL + G+T+I
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 83 THYIEEA 89
TH EA
Sbjct: 191 THDQVEA 197
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P GGQ +RV+I TL+ PS+ +LDEP S LD L ++RL + G+T+I
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 83 THYIEEA 89
TH EA
Sbjct: 191 THDQVEA 197
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ +R++IA LL P +VI DE TS LD +F + + L + +T+II H +
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLST 216
Query: 89 ARQANTV 95
A ++
Sbjct: 217 ISSAESI 223
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+SIA L+ P ++ILD+ TS +DP+ L R + +G T I T I
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT 540
Query: 89 ARQANTV 95
A A+ +
Sbjct: 541 ALLADKI 547
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P GGQ +RV+I TL+ PS+ +LD+P S LD L ++RL + G+T+I
Sbjct: 131 PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190
Query: 83 THYIEEA 89
TH EA
Sbjct: 191 THDQVEA 197
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 9 EILTRTRDFA----LRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL 61
EI + R+ A + KLL P GGQ +RV+IA L+ P +++LDEP S LD +L
Sbjct: 109 EIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALL 168
Query: 62 ANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
L RL + G T + TH EA
Sbjct: 169 RLEVRAELKRLQKELGITTVYVTHDQAEA 197
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P+ GGQ +RV+IA L +P +++ DE TS LDP L ++ + G TI++
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLI 197
Query: 83 THYIE 87
TH ++
Sbjct: 198 THEMD 202
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+++RV+IA LL + + DEP+S LD R + RLS +G+++++ H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 6/55 (10%)
Query: 4 LLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
LL+P I+ D R++ N GG+++RV+IA TLL + +LDEP++ LD
Sbjct: 385 LLKPLGII----DLYDREV--NELSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 1 MSLLLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60
++LL P ++LTR+ + GG+ +R I + P L ILDE SGLD
Sbjct: 128 IALLKMPEDLLTRSVNVGFS--------GGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 61 LANIFWRYLNRLSVQGQTIIITTHY 85
+ +N L ++ II THY
Sbjct: 180 ALKVVADGVNSLRDGKRSFIIVTHY 204
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 1 MSLLLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60
++LL P ++LTR+ + GG+ +R I + P L ILDE SGLD
Sbjct: 147 IALLKMPEDLLTRSVNVGFS--------GGEKKRNDILQMAVLEPELCILDESDSGLDID 198
Query: 61 LANIFWRYLNRLSVQGQTIIITTHY 85
+ +N L ++ II THY
Sbjct: 199 ALKVVADGVNSLRDGKRSFIIVTHY 223
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+SIA L++P ++ILDE TS LD +I L+ LS + +T +I H +
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST 538
Query: 89 ARQANTV 95
A+ +
Sbjct: 539 ITHADKI 545
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L +P +++LDE T+ LD ++ + L+ L ++G+T ++ H +
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-MKGRTTLVIAHRLST 200
Query: 89 ARQANTVF 96
A+ ++
Sbjct: 201 IVDADKIY 208
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P+ GGQ +RV+IA L +P +++ D+ TS LDP L ++ + G TI++
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220
Query: 83 THYIE 87
TH ++
Sbjct: 221 THEMD 225
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYI- 86
GG +RV IA+ LL P ++ILDEPTS LD + A+I + T+I TH I
Sbjct: 157 GGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIA 216
Query: 87 ---EEARQANTVFGG 98
E A + ++GG
Sbjct: 217 VAAELADKVAVIYGG 231
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV+IA LL ++ILDE TS LD L+ L + +T+++ H +
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLST 541
Query: 89 ARQANTV 95
QA+ +
Sbjct: 542 IEQADEI 548
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P+ GGQ +RV+IA L +P +++ D+ TS LDP L ++ + G TI++
Sbjct: 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLI 220
Query: 83 TH 84
TH
Sbjct: 221 TH 222
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+++RV+IA LL DEP+S LD R + RL+ +G+ +++ H
Sbjct: 217 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 272
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA TLL + +LDEP++ LD
Sbjct: 460 GGELQRVAIAATLLRDADIYLLDEPSAYLD 489
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+++RV+IA LL DEP+S LD R + RL+ +G+ +++ H
Sbjct: 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEH 286
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA TLL + +LDEP++ LD
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLD 503
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81
GG+ +RV+IA T+L +P +++LDE TS LD L ++ TI++
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVV 245
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
P GG+ +RV+IA L + P L+ DEPT LD +++ G +I++ T
Sbjct: 138 PYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT 197
Query: 84 HYIE 87
H E
Sbjct: 198 HERE 201
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 9 EILTRTRDFALRKLL--------PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60
E+ R + A RKLL P GGQ +RV++A L+ P +++ DEP S LD
Sbjct: 109 EVEKRVVEIA-RKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167
Query: 61 LANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
L I + L + G T + TH EA
Sbjct: 168 LRMIMRAEIKHLQQELGITSVYVTHDQAEA 197
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 29 GGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +R+ +A L S ++ +LDEPT+GL P R L +L G T+I H
Sbjct: 733 GGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
Query: 86 IE 87
++
Sbjct: 793 MQ 794
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 30 GQVRRVSIAVTLLHS--PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
G+++R+ +A L + + +LDEP++GL P L L G ++ + H ++
Sbjct: 383 GELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLD 442
Query: 88 EARQAN 93
R+A+
Sbjct: 443 VIRRAD 448
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIII 81
P GGQ +RV++A L+ PSL++LDEP S LD + + + + + G T+++
Sbjct: 137 FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 82 TTH 84
+H
Sbjct: 197 VSH 199
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 9 EILTRTRDFA----LRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL 61
EI R R+ A L +LL P GGQ +RV++ ++ P + ++DEP S LD L
Sbjct: 115 EIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 62 ANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
L +L Q G T I TH EA
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEA 203
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL ++ILDE TS LD L+ L + +T ++ H +
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST 541
Query: 89 ARQANTV 95
QA+ +
Sbjct: 542 IEQADEI 548
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII 80
K L GG+ + ++I L P L+ DEP+ GL P+L + + + +++ +G TI+
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 81 ITTH 84
+
Sbjct: 194 LVEQ 197
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 9 EILTRTRDFA----LRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL 61
EI R R+ A L +LL P GGQ +RV++ ++ P + + DEP S LD L
Sbjct: 118 EIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKL 177
Query: 62 ANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
L +L Q G T I TH EA
Sbjct: 178 RVKXRAELKKLQRQLGVTTIYVTHDQVEA 206
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTH 84
GGQ + + IA + L++LDEPTS LD +I L L+ Q T++ TTH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIII 81
P G Q +RV++A L+ PSL++LDEP S LD + + + + + G T+++
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 82 TTH 84
+H
Sbjct: 197 VSH 199
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 GGQVRRVSIAVTL---LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +RV +A L + +L ILDEPT+GL L+RL G T+++ H
Sbjct: 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 86 IEEARQANTV 95
++ + A+ +
Sbjct: 908 LDVIKTADYI 917
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 GGQVRRVSIAVTL---LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +RV +A L + +L ILDEPT+GL L+RL G T+++ H
Sbjct: 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907
Query: 86 IEEARQANTV 95
++ + A+ +
Sbjct: 908 LDVIKTADYI 917
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL ++ILDE TS LD L+ L + +T ++ H +
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST 541
Query: 89 ARQANTV 95
+A+ +
Sbjct: 542 IEKADEI 548
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVI--LDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86
GG+ +R+ +A + + VI LDEPT GL P + L +L G T+I+ H
Sbjct: 467 GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDE 526
Query: 87 EEARQANTV 95
E R A+ +
Sbjct: 527 EVIRNADHI 535
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 29 GGQVRRVSIAVTLLHSPS---LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +R+ +A L + L ILDEPT GL L+RL +G T+I+ H
Sbjct: 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867
Query: 86 IEEARQANTV 95
++ + A+ +
Sbjct: 868 LDVIKNADHI 877
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 GGQVRRVSIAVTL---LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +RV +A L + +L ILDEPT+GL L+RL G T+++ H
Sbjct: 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Query: 86 IEEARQANTV 95
++ + A+ +
Sbjct: 606 LDVIKTADYI 615
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 4 LLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
LL+ E+L R P GGQ +RV++A ++ P ++++DEP S LD L
Sbjct: 128 LLQIEELLNR---------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 178
Query: 64 IFWRYLNRLSVQGQTIIITTHYI 86
+ +L Q + +TT Y+
Sbjct: 179 AMRAEIKKLQ---QKLKVTTIYV 198
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 4 LLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
LL+ E+L R P GGQ +RV++A ++ P ++++DEP S LD L
Sbjct: 129 LLQIEELLNR---------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 179
Query: 64 IFWRYLNRLSVQGQTIIITTHYI 86
+ +L Q + +TT Y+
Sbjct: 180 AMRAEIKKLQ---QKLKVTTIYV 199
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI--IITTHYIE 87
G+ +RV IA L P ++ILDEP +GLD + L+ LS T+ I TH+IE
Sbjct: 165 GEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIE 224
Query: 88 E 88
E
Sbjct: 225 E 225
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 1 MSLLLRPAEILTRTRDFALRKLL------------PNWTVGGQVRRVSIAVTLLHSPSLV 48
+S LR + D +R+LL P+ GGQ +RV++A L P ++
Sbjct: 108 VSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVL 167
Query: 49 ILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
+ DEP + +D + ++ ++ + G T + TH EEA
Sbjct: 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA 209
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 23/100 (23%)
Query: 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ--------- 75
N GGQ + V++A L+ P L+ILD+ TS LD N+L VQ
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDQATSALDAG---------NQLRVQRLLYESPEW 205
Query: 76 -GQTIIITTHYIEEARQANTVF----GGFFAPKLHLSLNE 110
+T+++ TH + A +A+ + G HL L E
Sbjct: 206 ASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLME 245
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG ++++A +L + +++LDEPT+ LD V N+ W +N L+ G T I +H
Sbjct: 545 GGWKXKLALARAVLRNADILLLDEPTNHLDTV--NVAW-LVNYLNTCGITSITISH 597
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
GGQ ++ +A P L++LDEPT+ LD + L +G IIIT
Sbjct: 898 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT 949
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG ++++A +L + +++LDEPT+ LD V N+ W +N L+ G T I +H
Sbjct: 551 GGWKXKLALARAVLRNADILLLDEPTNHLDTV--NVAW-LVNYLNTCGITSITISH 603
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
GGQ ++ +A P L++LDEPT+ LD + L +G IIIT
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT 955
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG ++++A +L + +++LDEPT+ LD V N+ W +N L+ G T I +H
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLDTV--NVAW-LVNYLNTCGITSITISH 603
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
GGQ ++ +A P L++LDEPT+ LD + L +G IIIT
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIIT 955
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 25 NWTVGGQVRRVSIAVTLLH-------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77
N GG+ +RV +A +L + L++LDEP + LD + + L+ LS QG
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGL 184
Query: 78 TIIITTH 84
I+ ++H
Sbjct: 185 AIVXSSH 191
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII--I 81
P GG+ +RV++A L+ P L++LDEP S +D + L + + I +
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 82 TTHYIEEARQANTV 95
T IE A A+ V
Sbjct: 184 THDLIEAAMLADEV 197
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +R I L+ P+ +LDE SGLD + R +N + ++ THY
Sbjct: 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 25 NWTVGGQVRRVSIAVTLLH-------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77
N GG+ +RV +A +L + L++LDEP + LD + + L+ L QG
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGL 184
Query: 78 TIIITTH 84
I+ ++H
Sbjct: 185 AIVXSSH 191
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 29 GGQVRRVSIAVTLLH---SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +RV +A L ++ ILDEPT+GL +N L +G T+I+ H
Sbjct: 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHN 925
Query: 86 IE 87
++
Sbjct: 926 LD 927
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
N GGQ + V++A L+ P L+ILD TS LD
Sbjct: 155 NQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIIT 82
P+ GGQ +R ++A L P L++LDEP S LD L I + L G++ +
Sbjct: 136 PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFV 195
Query: 83 THYIEEARQ 91
+H EEA Q
Sbjct: 196 SHDREEALQ 204
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 32.0 bits (71), Expect = 0.082, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 14 TRDFALRKLLP---NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
T+ L +LL N GG+++++ IA TL L +LD+P+S LD
Sbjct: 370 TKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
GGQ + V++A L+ P ++ILD+ TS LD + + + R S +++++ T
Sbjct: 157 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS---RSVLLITQ 213
Query: 85 YIEEARQANTVF 96
++ QA+ +
Sbjct: 214 HLSLVEQADHIL 225
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
G + + +A ++L +++LDEP++ LDPV I R L + + T+I+ IE
Sbjct: 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADCTVILCEARIE 215
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GQ V ++ L P +V LDEP +D ++ RY+ +G I+ TH ++
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---ILVTHELD 186
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD + IF + +L + +T I+ T +E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 220
Query: 88 EARQANTV 95
++A+ +
Sbjct: 221 HLKKADKI 228
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD + IF + +L + +T I+ T +E
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 221
Query: 88 EARQANTV 95
++A+ +
Sbjct: 222 HLKKADKI 229
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD + IF + +L + +T I+ T +E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 220
Query: 88 EARQANTV 95
++A+ +
Sbjct: 221 HLKKADKI 228
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD + IF + +L + +T I+ T +E
Sbjct: 145 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 203
Query: 88 EARQANTV 95
++A+ +
Sbjct: 204 HLKKADKI 211
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD + IF + +L + +T I+ T +E
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 191
Query: 88 EARQANTV 95
++A+ +
Sbjct: 192 HLKKADKI 199
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD + IF + +L + +T I+ T +E
Sbjct: 132 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 190
Query: 88 EARQANTV 95
++A+ +
Sbjct: 191 HLKKADKI 198
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD +F + +L + +T I+ T +E
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKME 221
Query: 88 EARQANTV 95
R+A+ +
Sbjct: 222 HLRKADKI 229
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD +F + +L + +T I+ T +E
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKME 221
Query: 88 EARQANTV 95
R+A+ +
Sbjct: 222 HLRKADKI 229
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD +F + +L + +T I+ T +E
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKME 221
Query: 88 EARQANTV 95
R+A+ +
Sbjct: 222 HLRKADKI 229
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD +F + +L + +T I+ T +E
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKME 221
Query: 88 EARQANTV 95
R+A+ +
Sbjct: 222 HLRKADKI 229
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD +F + +L + +T I+ T +E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKTRILVTSKME 220
Query: 88 EARQANTV 95
R+A+ +
Sbjct: 221 HLRKADKI 228
>pdb|3RPT|X Chain X, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
pdb|3RPT|A Chain A, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
Length = 282
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 38 AVTLLHSPSLVILDEPTSGLDPVLANIFWRY 68
A L + P+ +I+D SG DP +A WR+
Sbjct: 94 AAGLKNRPAYIIVDPGGSGGDPEIAEAAWRF 124
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYLN-RLSVQGQTIIITTHYI 86
GGQ +RVS+A + + + + D+P S +D V +IF + + ++ +T I+ TH +
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189
Query: 87 EEARQANTV 95
Q + +
Sbjct: 190 SYLPQVDVI 198
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
G +RRV +A TLL + + +LD+P +D
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAID 165
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
R+++++ L SL+ILDEPT LD L I RYL ++ +I+ +H
Sbjct: 97 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP----QVILVSH 147
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
R+++++ L SL+ILDEPT LD L I RYL ++ +I+ +H
Sbjct: 102 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP----QVILVSH 152
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
R+++++ L SL+ILDEPT LD L I RYL ++ +I+ +H E
Sbjct: 67 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP----QVILVSHDEELK 122
Query: 90 RQANTV 95
A+ V
Sbjct: 123 DAADHV 128
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
R+++++ L SL+ILDEPT LD L I RYL ++ +I+ +H E
Sbjct: 71 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP----QVILVSHDEELK 126
Query: 90 RQANTV 95
A+ V
Sbjct: 127 DAADHV 132
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLH------SPSLVILDEPTSGLDPVLA 62
+++ +T AL + GG+ +RV +A L +P + LDEPTS LD
Sbjct: 124 QVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183
Query: 63 NIFWRYLNRLSVQ 75
R L +L+ Q
Sbjct: 184 QHTLRLLRQLTRQ 196
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
R+++++ L SL+ILDEPT LD L I RYL ++ +I+ +H E
Sbjct: 262 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP----QVILVSHDEELK 317
Query: 90 RQANTV 95
A+ V
Sbjct: 318 DAADHV 323
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
R+++++ L SL+ILDEPT LD L I RYL ++ +I+ +H E
Sbjct: 282 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP----QVILVSHDEELK 337
Query: 90 RQANTV 95
A+ V
Sbjct: 338 DAADHV 343
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++R +I ++ + + + DEP+S LD
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIITTH-YI 86
GG+++RV+I + L + ++DEP++ LD I + + R + +T I H +I
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529
Query: 87 EEARQANT--VFGGFFAPKLHLSLNESEL 113
A+ VF G + H ES L
Sbjct: 530 MATYLADKVIVFEGIPSKNAHARAPESLL 558
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 11/101 (10%)
Query: 3 LLLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHS------PSLVILDEPTSG 56
LL EI+ + L+ L N GG+ R A+ LL S +LDE +
Sbjct: 307 LLHSGVEIIAQPPGKKLQNL--NLLSGGE--RALTAIALLFSILKVRPVPFCVLDEVEAA 362
Query: 57 LDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97
LD F +YL + S Q I+I TH +A+ ++G
Sbjct: 363 LDEANVFRFAQYLKKYSSDTQFIVI-THRKGTMEEADVLYG 402
>pdb|3RY3|A Chain A, Putative Solute-Binding Protein From Yersinia Pestis.
pdb|3RY3|B Chain B, Putative Solute-Binding Protein From Yersinia Pestis
Length = 528
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 43 HSPSLVILDEPTSGLDPVLA 62
H+ L I DEPT G DP L
Sbjct: 32 HTLQLAIGDEPTEGFDPXLG 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,252,051
Number of Sequences: 62578
Number of extensions: 112340
Number of successful extensions: 296
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 118
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)