BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6940
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum
GN=abcG20 PE=3 SV=1
Length = 730
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 50/68 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RVS+AV LLHSP L+ILDEPT G+D +A+ W YL L+ G TIIITTHYI E
Sbjct: 148 GGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLRSLANSGVTIIITTHYINE 207
Query: 89 ARQANTVF 96
A ++ VF
Sbjct: 208 AVGSDNVF 215
>sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum
GN=abcG23 PE=3 SV=2
Length = 701
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ RRVS+A L+HSP L+ILDEPT G+ P++++ W +L L+ G TIIITTHY++
Sbjct: 140 GGQQRRVSLATALIHSPKLLILDEPTVGVCPLVSSKIWEHLIFLTKNFGVTIIITTHYLQ 199
Query: 88 EARQANTVF 96
E R + +F
Sbjct: 200 ECRSCDNIF 208
>sp|P36879|YADG_ECOLI Uncharacterized ABC transporter ATP-binding protein YadG
OS=Escherichia coli (strain K12) GN=yadG PE=3 SV=1
Length = 308
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+ IA L+H P L+ILDEPT+G+D L W +L L+ +G TII+TTHY+EE
Sbjct: 139 GGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEE 198
Query: 89 A 89
A
Sbjct: 199 A 199
>sp|O07016|YVFR_BACSU Uncharacterized ABC transporter ATP-binding protein YvfR
OS=Bacillus subtilis (strain 168) GN=yvfR PE=3 SV=1
Length = 301
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ RR+S A+ L +P L+ILDEPT G+D + FW+ ++ LS QG+TII +THY++E
Sbjct: 133 GGQKRRLSFALALAGNPELLILDEPTVGMDTSSRHRFWQTIHGLSDQGKTIIFSTHYLQE 192
Query: 89 ARQA 92
A A
Sbjct: 193 ADDA 196
>sp|P37624|YHIH_ECOLI Uncharacterized ABC transporter ATP-binding protein YhiH
OS=Escherichia coli (strain K12) GN=yhiH PE=3 SV=3
Length = 911
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R AE+ R + + +LP G +R+S+AV ++H P ++ILDEPTSG+DPV ++F
Sbjct: 387 RVAEMSERFKLNDVEDILPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMF 446
Query: 66 WRYLNRLSVQGQ-TIIITTHYIEEARQANTV 95
W+ + LS Q + TI I+TH++ EA + + +
Sbjct: 447 WQLMVDLSRQDKVTIFISTHFMNEAERCDRI 477
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 5 LRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANI 64
+R E+LT T R GG +++ + L+H P L+ILDEPT+G+DP+ +
Sbjct: 126 VRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSRSQ 185
Query: 65 FWRYLN--RLSVQGQTIIITTHYIEEARQ 91
FW ++ R ++++ T Y+EEA +
Sbjct: 186 FWDLIDSIRQRQSNMSVLVATAYMEEAER 214
>sp|Q2SVP3|NODI_BURTA Nod factor export ATP-binding protein I OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=nodI PE=3 SV=2
Length = 304
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 48/63 (76%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L+++P +++LDEPT+GLDP ++ W L L V+G+TI++TTH++EE
Sbjct: 139 GGMKRRLTLARALVNNPDVLVLDEPTTGLDPQARHLMWERLRSLLVRGKTILLTTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|Q46YX6|NODI_CUPPJ Nod factor export ATP-binding protein I OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=nodI PE=3
SV=1
Length = 325
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+I+DEPT+GLDP ++ W L L G+TI++TTH++EE
Sbjct: 160 GGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLMASGKTILLTTHFMEE 219
Query: 89 ARQ 91
A +
Sbjct: 220 AER 222
>sp|Q39GT7|NODI_BURS3 Nod factor export ATP-binding protein I OS=Burkholderia sp. (strain
383) GN=nodI PE=3 SV=2
Length = 304
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P +++LDEPT+GLDP ++ W L L +G+TI+ITTH++EE
Sbjct: 139 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILITTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|Q1BWI2|NODI_BURCA Nod factor export ATP-binding protein I OS=Burkholderia cenocepacia
(strain AU 1054) GN=nodI PE=3 SV=1
Length = 304
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P +++LDEPT+GLDP ++ W L L +G+TI+ITTH++EE
Sbjct: 139 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILITTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|Q8KLG1|NODI_RHIEC Nod factor export ATP-binding protein I OS=Rhizobium etli (strain
CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3
Length = 316
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+++DEPT+GLDP ++ W L L +G+TII+TTH++EE
Sbjct: 151 GGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRSLLTRGKTIILTTHFMEE 210
Query: 89 ARQ 91
A +
Sbjct: 211 AER 213
>sp|P55476|NODI_RHISN Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain
NGR234) GN=nodI PE=3 SV=1
Length = 343
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP ++ W L L G+TI++TTH++EE
Sbjct: 178 GGMQRRLTLACALINDPQLLILDEPTTGLDPHARHLIWERLRSLLALGKTILLTTHFMEE 237
Query: 89 A 89
A
Sbjct: 238 A 238
>sp|P72335|NODI_RHIS3 Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain
N33) GN=nodI PE=3 SV=1
Length = 304
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+++DEPT+GLDP ++ W L L +G+TII+TTH++EE
Sbjct: 139 GGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFLLARGKTIILTTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|Q1LKJ2|NODI_RALME Nod factor export ATP-binding protein I OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=nodI PE=3 SV=1
Length = 303
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+I+DEPT+GLDP ++ W L L G+TI++TTH++EE
Sbjct: 138 GGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLLSAGKTILLTTHFMEE 197
Query: 89 ARQ 91
A +
Sbjct: 198 AER 200
>sp|Q6LX68|ECFA_METMP Energy-coupling factor transporter ATP-binding protein EcfA
OS=Methanococcus maripaludis (strain S2 / LL) GN=ecfA
PE=3 SV=1
Length = 278
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 1 MSLLLRPAEILTRTRDF-------ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEP 53
M+L L EI R +D + P+ GGQ +R++IA L +P +++LDEP
Sbjct: 107 MNLGLSKEEIEKRVKDSLKAVSMEGFERKPPHHLSGGQKKRIAIAGILAMNPEIIVLDEP 166
Query: 54 TSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
TSGLDP+ A+ + L L+ QG TIII+TH ++
Sbjct: 167 TSGLDPMGASQIMKLLYELNRQGITIIISTHDVD 200
>sp|Q3JSQ0|NODI_BURP1 Nod factor export ATP-binding protein I OS=Burkholderia
pseudomallei (strain 1710b) GN=nodI PE=3 SV=2
Length = 304
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P +++LDEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 139 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|Q62K72|NODI_BURMA Nod factor export ATP-binding protein I OS=Burkholderia mallei
(strain ATCC 23344) GN=nodI PE=3 SV=2
Length = 304
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P +++LDEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 139 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|Q63TX3|NODI_BURPS Nod factor export ATP-binding protein I OS=Burkholderia
pseudomallei (strain K96243) GN=nodI PE=3 SV=2
Length = 304
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P +++LDEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 139 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|Q13ZJ1|NODI_BURXL Nod factor export ATP-binding protein I OS=Burkholderia xenovorans
(strain LB400) GN=nodI PE=3 SV=1
Length = 304
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P ++I+DEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 139 GGMKRRLTLARALVNDPDVLIMDEPTTGLDPQARHLIWERLRSLLARGKTILLTTHFMEE 198
Query: 89 ARQ 91
A +
Sbjct: 199 AER 201
>sp|P26050|NODI_BRAJA Nod factor export ATP-binding protein I OS=Bradyrhizobium japonicum
(strain USDA 110) GN=nodI PE=3 SV=2
Length = 306
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+++DEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 141 GGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKTILLTTHFMEE 200
Query: 89 ARQ 91
A +
Sbjct: 201 AER 203
>sp|Q8XXY9|NODI_RALSO Nod factor export ATP-binding protein I OS=Ralstonia solanacearum
(strain GMI1000) GN=nodI PE=3 SV=1
Length = 321
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A +L++ P ++++DEPT+GLDP ++ W L L G+TI++TTH++EE
Sbjct: 150 GGMRRRLTVARSLINDPDVLVMDEPTTGLDPQARHLIWERLRSLLASGKTILLTTHFMEE 209
Query: 89 ARQ 91
A +
Sbjct: 210 AER 212
>sp|Q9Z3I3|NODI_BRASS Nod factor export ATP-binding protein I OS=Bradyrhizobium sp.
(strain SNU001) GN=nodI PE=3 SV=1
Length = 305
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+++DEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 140 GGMKRRLTLARALINDPHLLVMDEPTTGLDPHARHLIWERLRALLARGKTILLTTHFMEE 199
Query: 89 ARQ 91
A +
Sbjct: 200 AER 202
>sp|P08720|NODI_RHILV Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum
bv. viciae GN=nodI PE=3 SV=1
Length = 311
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP ++ W L L +G+TI++TTH +EE
Sbjct: 146 GGMKRRLTLAGALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEE 205
Query: 89 ARQ 91
A +
Sbjct: 206 AER 208
>sp|Q1M7W6|NODI_RHIL3 Nod factor export ATP-binding protein I OS=Rhizobium leguminosarum
bv. viciae (strain 3841) GN=nodI PE=3 SV=2
Length = 311
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP ++ W L L +G+TI++TTH +EE
Sbjct: 146 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEE 205
Query: 89 ARQ 91
A +
Sbjct: 206 AER 208
>sp|Q50801|Y583_METTM Putative ABC transporter ATP-binding protein MTBMA_c05830
OS=Methanothermobacter marburgensis (strain DSM 2133 /
14651 / NBRC 100331 / OCM 82 / Marburg) GN=MTBMA_c05830
PE=3 SV=2
Length = 278
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 9/95 (9%)
Query: 1 MSLLLRPAEILTRTRDFALRKL--------LPNWTVGGQVRRVSIAVTLLHSPSLVILDE 52
+++ L E+ R +D ALRK+ P+ GG+ +RV+IA L P ++ILDE
Sbjct: 107 LNMGLDEDEVEERVKD-ALRKVGMSGYEDRPPHHLSGGEKKRVAIAGILAMKPDIMILDE 165
Query: 53 PTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
PTSGLDP A+ R L+ L+ +G TIII+TH ++
Sbjct: 166 PTSGLDPRGASQILRLLHELNEEGMTIIISTHDVD 200
>sp|Q8GNH6|NODI_RHIML Nod factor export ATP-binding protein I OS=Rhizobium meliloti
GN=nodI PE=3 SV=1
Length = 335
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP ++ W L L +G+TI++TTH +EE
Sbjct: 170 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEE 229
Query: 89 ARQ 91
A +
Sbjct: 230 AER 232
>sp|O52618|NODI_RHIME Nod factor export ATP-binding protein I OS=Rhizobium meliloti
(strain 1021) GN=nodI PE=3 SV=3
Length = 335
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP ++ W L L +G+TI++TTH +EE
Sbjct: 170 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHIMEE 229
Query: 89 ARQ 91
A +
Sbjct: 230 AER 232
>sp|P23703|NODI_RHILO Nod factor export ATP-binding protein I OS=Rhizobium loti (strain
MAFF303099) GN=nodI PE=3 SV=2
Length = 340
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG R +++A L++ P L+++DEPT+GLDP ++ W L L +G+TII+TTH++EE
Sbjct: 175 GGMKRCLTMARALINDPQLIVMDEPTTGLDPHARHLIWERLRALLARGKTIILTTHFMEE 234
Query: 89 ARQ 91
A +
Sbjct: 235 AER 237
>sp|P0A9U2|YBHF_SHIFL Uncharacterized ABC transporter ATP-binding protein YbhF
OS=Shigella flexneri GN=ybhF PE=3 SV=1
Length = 578
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 47/66 (71%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G +R+++A +L+H P ++ LDEPTSG+DP+ FW ++N + +G T+++TTH+++EA
Sbjct: 464 GFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEA 523
Query: 90 RQANTV 95
+ +
Sbjct: 524 EYCDRI 529
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG +++ +A TL+ P +++LDEP G+DP+ W+ ++ L+ +G I+ +T Y++E
Sbjct: 141 GGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDE 200
Query: 89 ARQANTVFGGFFAPKLHLSLNESELL 114
A Q V L +NE ELL
Sbjct: 201 AEQCRDV----------LLMNEGELL 216
>sp|P0A9U1|YBHF_ECOLI Uncharacterized ABC transporter ATP-binding protein YbhF
OS=Escherichia coli (strain K12) GN=ybhF PE=1 SV=1
Length = 578
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 47/66 (71%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G +R+++A +L+H P ++ LDEPTSG+DP+ FW ++N + +G T+++TTH+++EA
Sbjct: 464 GFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVEKGVTVMVTTHFMDEA 523
Query: 90 RQANTV 95
+ +
Sbjct: 524 EYCDRI 529
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 10/86 (11%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG +++ +A TL+ P +++LDEP G+DP+ W+ ++ L+ +G I+ +T Y++E
Sbjct: 141 GGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDE 200
Query: 89 ARQANTVFGGFFAPKLHLSLNESELL 114
A Q V L +NE ELL
Sbjct: 201 AEQCRDV----------LLMNEGELL 216
>sp|P50332|NODI_RHIGA Nod factor export ATP-binding protein I OS=Rhizobium galegae
GN=nodI PE=3 SV=1
Length = 347
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP + W L L ++G+TI++TTH ++E
Sbjct: 182 GGMKRRLTLARALVNDPQLLILDEPTTGLDPPARHQIWERLRSLLIRGKTILLTTHMMDE 241
Query: 89 ARQ 91
A +
Sbjct: 242 AER 244
>sp|Q0TMS7|ECFA3_CLOP1 Energy-coupling factor transporter ATP-binding protein EcfA 3
OS=Clostridium perfringens (strain ATCC 13124 / NCTC
8237 / Type A) GN=ecfA3 PE=3 SV=1
Length = 281
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 2 SLLLRPAEILTRTRD-------FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPT 54
+L + P EI R D + RK P+ GGQ +R++IA L P ++LDEPT
Sbjct: 114 NLGVDPKEIRERVDDSLKAVGMYEYRKHAPHLLSGGQKQRIAIAGILAMRPKCIVLDEPT 173
Query: 55 SGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQANTVF 96
+ LDP N + + ++ + G TII+ THY++EA QA+ +
Sbjct: 174 AMLDPSGRNEVMKTIKEVNKKFGITIILITHYMDEAAQADRII 216
>sp|Q8XHV2|ECFA2_CLOPE Energy-coupling factor transporter ATP-binding protein EcfA 2
OS=Clostridium perfringens (strain 13 / Type A) GN=ecfA2
PE=3 SV=1
Length = 281
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 2 SLLLRPAEILTRTRD-------FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPT 54
+L + P EI R D + RK P+ GGQ +R++IA L P ++LDEPT
Sbjct: 114 NLGVDPKEIRERVDDSLKAVGMYEYRKHAPHLLSGGQKQRIAIAGILAMRPKCIVLDEPT 173
Query: 55 SGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQANTVF 96
+ LDP N + + ++ + G TII+ THY++EA QA+ +
Sbjct: 174 AMLDPSGRNEVMKTIKEVNKKFGITIILITHYMDEAAQADRII 216
>sp|Q0SQH5|ECFA2_CLOPS Energy-coupling factor transporter ATP-binding protein EcfA 2
OS=Clostridium perfringens (strain SM101 / Type A)
GN=ecfA2 PE=3 SV=1
Length = 281
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
Query: 2 SLLLRPAEILTRTRD-------FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPT 54
+L + P EI R D + RK P+ GGQ +R++IA L P ++LDEPT
Sbjct: 114 NLGVDPKEIRERVDDSLKAVGMYEYRKHAPHLLSGGQKQRIAIAGILAMRPKCIVLDEPT 173
Query: 55 SGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQANTVF 96
+ LDP N + + ++ + G TII+ THY++EA QA+ +
Sbjct: 174 AMLDPSGRNEVMKTIKEVNKKFGITIILITHYMDEAAQADRII 216
>sp|Q2NHA1|ECFA_METST Energy-coupling factor transporter ATP-binding protein EcfA
OS=Methanosphaera stadtmanae (strain DSM 3091) GN=ecfA
PE=3 SV=1
Length = 278
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 9/95 (9%)
Query: 1 MSLLLRPAEILTRTRDFALRKLL--------PNWTVGGQVRRVSIAVTLLHSPSLVILDE 52
M++ L E+ TR+ D AL K+ P+ GGQ +RV+IA L P +++LDE
Sbjct: 108 MNMGLSEEEVKTRSMD-ALEKVGMSDYAEKPPHHLSGGQKKRVAIAGILSMKPKVMVLDE 166
Query: 53 PTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
PTSGLDP A+ + L L+ +G TIII+TH ++
Sbjct: 167 PTSGLDPNGASSIMQLLYDLNKEGMTIIISTHDVD 201
>sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1
PE=2 SV=2
Length = 1882
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
Query: 24 PNWTV-GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQT-II 80
P++T+ GG R++S+A+ ++ P +VILDEP++G+DPV W ++RLS + G+T +I
Sbjct: 1586 PSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVI 1645
Query: 81 ITTHYIEEARQANTVFG 97
+TTH + EA+ T G
Sbjct: 1646 LTTHSMNEAQALCTRIG 1662
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG R++S+ + L+ + ++ILDEPTSG+DP + W+ L + +G+ I++TTH ++E
Sbjct: 686 GGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQ-LIKKIKKGRIILLTTHSMDE 744
Query: 89 ARQANTVFG 97
A + G
Sbjct: 745 AEELGDRIG 753
>sp|O26236|Y133_METTH Putative ABC transporter ATP-binding protein MTH_133
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_133 PE=3 SV=1
Length = 280
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 9/95 (9%)
Query: 1 MSLLLRPAEILTRTRDFALRKL--------LPNWTVGGQVRRVSIAVTLLHSPSLVILDE 52
+++ L E+ R RD AL+K+ P+ GG+ +RV+IA + P +++LDE
Sbjct: 109 LNMGLSEDEVEERVRD-ALQKVGMLGYESKPPHHFSGGEKKRVAIAGIIAMKPDIMVLDE 167
Query: 53 PTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
PTSGLDP A+ R L+ L+ +G TIII+TH ++
Sbjct: 168 PTSGLDPRGASQILRLLHNLNEEGMTIIISTHDVD 202
>sp|Q58488|ECFA_METJA Energy-coupling factor transporter ATP-binding protein EcfA
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=ecfA PE=3
SV=1
Length = 279
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
P+ GGQ +RV+IA L P +++LDEPT+GLDPV A+ + L L+ +G TIII+T
Sbjct: 137 PHHLSGGQKKRVAIAGILAMQPEVIVLDEPTAGLDPVGASKIMKLLYDLNKKGMTIIIST 196
Query: 84 HYIE 87
H ++
Sbjct: 197 HDVD 200
>sp|P94440|YFIL_BACSU Uncharacterized ABC transporter ATP-binding protein YfiL
OS=Bacillus subtilis (strain 168) GN=yfiL PE=3 SV=2
Length = 311
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR++I L+H P L+I+DEPT G+DP N + +L+ G T+I T+HY+EE
Sbjct: 135 GGMKRRINIGAALMHKPELLIMDEPTVGIDPQSRNHILETVKQLNETGMTVIYTSHYMEE 194
>sp|Q9FKF2|AB11A_ARATH ABC transporter A family member 11 OS=Arabidopsis thaliana
GN=ABCA11 PE=3 SV=1
Length = 953
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+S+AV L+ P LV LDEPT+G+DP+ W + S +G+ II+TTH +EE
Sbjct: 668 GGMKRRLSVAVALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEE 726
Query: 89 A 89
A
Sbjct: 727 A 727
>sp|Q8RCU0|PSTB1_THETN Phosphate import ATP-binding protein PstB 1 OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=pstB1 PE=3 SV=1
Length = 239
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY 68
E + ++D+ + + N GG+ +RVSIA L +SP +++LDEPTS LDP +I
Sbjct: 115 EAVGLSKDYLFKDV--NNLSGGEAQRVSIARALANSPEVLLLDEPTSSLDPTSTSIIEEL 172
Query: 69 LNRLSVQGQTIIITTHYIEEARQ 91
+ RL+ +G +I+ TH +E+A++
Sbjct: 173 IKRLNREGIMVILVTHNMEQAKR 195
>sp|Q9FLT8|AB12A_ARATH ABC transporter A family member 12 OS=Arabidopsis thaliana
GN=ABCA12 PE=3 SV=1
Length = 917
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+S+A++L+ +P +V LDEP++GLDP W + R + Q II+TTH +EE
Sbjct: 736 GGMKRRLSVAISLIGNPKVVYLDEPSTGLDPASRKNLWNVIKR-AKQNTAIILTTHSMEE 794
Query: 89 ARQANTVFGGFFAPKLHLSLNESEL 113
A G F L N EL
Sbjct: 795 AEFLCDRLGIFVDGGLQCIGNSKEL 819
>sp|Q9FLT5|AB9A_ARATH ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9
PE=3 SV=1
Length = 950
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+S+A+ L+ P LV LDEPT+G+DP+ W + S +G+ II+TTH +EE
Sbjct: 669 GGMKRRLSVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-SKKGRAIILTTHSMEE 727
Query: 89 A 89
A
Sbjct: 728 A 728
>sp|Q84K47|AB2A_ARATH ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2
PE=2 SV=1
Length = 983
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+S+AV+L+ P LV LDEPT+G+DP+ W + + +G+ II+TTH +EE
Sbjct: 667 GGMKRRLSVAVSLIGDPKLVFLDEPTTGMDPITRRHVWDIIQE-TKKGRAIILTTHSMEE 725
Query: 89 A 89
A
Sbjct: 726 A 726
>sp|P32010|DRRA_STRPE Daunorubicin/doxorubicin resistance ATP-binding protein DrrA
OS=Streptomyces peucetius GN=drrA PE=1 SV=1
Length = 330
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 18 ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77
A +LL ++ GG RR+ IA +++ +P L+ LDEPT+GLDP N W + L G
Sbjct: 132 ARDRLLKTYS-GGMRRRLDIAASIVVTPDLLFLDEPTTGLDPRSRNQVWDIVRALVDAGT 190
Query: 78 TIIITTHYIEEARQ 91
T+++TT Y++EA Q
Sbjct: 191 TVLLTTQYLDEADQ 204
>sp|Q890R2|ECFA2_CLOTE Energy-coupling factor transporter ATP-binding protein EcfA 2
OS=Clostridium tetani (strain Massachusetts / E88)
GN=ecfA2 PE=3 SV=1
Length = 281
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 SLLLRPAEILTRTRD-------FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPT 54
+L + P EI TR + F +K P+ GGQ +RV+IA L P ++ DEPT
Sbjct: 114 NLGVEPKEIRTRVENSLKRVKMFEYKKHAPHLLSGGQKQRVAIAGVLAMMPECIVFDEPT 173
Query: 55 SGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQANTVF 96
+ LDP + L+ + G TI++ THY+EEA +A+ V
Sbjct: 174 AMLDPSGRKEVINTIKELNDEYGITIVLITHYMEEAVEADRVI 216
>sp|Q8DMY0|ECFA1_STRR6 Energy-coupling factor transporter ATP-binding protein EcfA 1
OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
GN=ecfA1 PE=3 SV=1
Length = 279
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ+RRV+IA L PS+++LDEPT+GLDP+ +L G TI++ TH +++
Sbjct: 148 GGQMRRVAIAGILAMEPSILVLDEPTAGLDPLGRKELMTLFKKLHQSGMTIVLVTHLMDD 207
Query: 89 -ARQANTVF 96
A AN V+
Sbjct: 208 VAEYANQVY 216
>sp|Q04HV8|ECFA1_STRP2 Energy-coupling factor transporter ATP-binding protein EcfA 1
OS=Streptococcus pneumoniae serotype 2 (strain D39 /
NCTC 7466) GN=ecfA1 PE=3 SV=1
Length = 279
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ+RRV+IA L PS+++LDEPT+GLDP+ +L G TI++ TH +++
Sbjct: 148 GGQMRRVAIAGILAMEPSILVLDEPTAGLDPLGRKELMTLFKKLHQSGMTIVLVTHLMDD 207
Query: 89 -ARQANTVF 96
A AN V+
Sbjct: 208 VAEYANQVY 216
>sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8
PE=2 SV=3
Length = 901
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+S+A++L+ SP +V +DEP++GLDP W + R +G II+TTH +EE
Sbjct: 727 GGMKRRLSVAISLIGSPKVVYMDEPSTGLDPASRKSLWDVVKRAKRKG-AIILTTHSMEE 785
Query: 89 ARQANTVFGGFFAPKLHLSLNESEL 113
A G F L N EL
Sbjct: 786 AEILCDRIGIFVDGSLQCIGNPKEL 810
>sp|O27739|ECFA_METTH Energy-coupling factor transporter ATP-binding protein EcfA
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=ecfA PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R AE L + P+ GG+ +RV+IA L P +++LDEPT+GLDP A+
Sbjct: 117 RVAESLEKVGMSGYENRAPHHLSGGEKKRVAIAGILAMKPEIMVLDEPTTGLDPETADGI 176
Query: 66 WRYLNRLSVQGQTIIITTHYIEEARQ-ANTVF 96
R L LS +G T++I++H +E Q A VF
Sbjct: 177 IRILLELSREGITVMISSHDVEIISQFAERVF 208
>sp|P46903|NATA_BACSU ATP-binding transport protein NatA OS=Bacillus subtilis (strain
168) GN=natA PE=3 SV=1
Length = 246
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 9/90 (10%)
Query: 9 EILTRTRD----FALRKLLPNWTVGG----QVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60
EI R D F +R + N VGG ++V+IA L+H P +++ DEPT+GLD
Sbjct: 113 EIKARIEDLSKRFGMRDYM-NRRVGGFSKGMRQKVAIARALIHDPDIILFDEPTTGLDIT 171
Query: 61 LANIFWRYLNRLSVQGQTIIITTHYIEEAR 90
+NIF ++ +L + +TI+ ++H +EE +
Sbjct: 172 SSNIFREFIQQLKREQKTILFSSHIMEEVQ 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,591,586
Number of Sequences: 539616
Number of extensions: 1487557
Number of successful extensions: 7359
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3581
Number of HSP's successfully gapped in prelim test: 205
Number of HSP's that attempted gapping in prelim test: 2963
Number of HSP's gapped (non-prelim): 4399
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)