Query psy6940
Match_columns 123
No_of_seqs 294 out of 1907
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:39:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 4.6E-31 1E-35 201.5 11.4 89 8-96 118-207 (240)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 6E-30 1.3E-34 199.2 12.1 109 6-114 119-232 (254)
3 COG1135 AbcC ABC-type metal io 100.0 2.9E-29 6.3E-34 199.6 9.8 105 6-111 121-227 (339)
4 COG1116 TauB ABC-type nitrate/ 100.0 6E-29 1.3E-33 192.5 10.4 90 7-96 111-202 (248)
5 COG1122 CbiO ABC-type cobalt t 100.0 5.8E-29 1.3E-33 191.9 9.5 108 7-115 119-228 (235)
6 COG1125 OpuBA ABC-type proline 100.0 1.1E-28 2.3E-33 192.7 10.1 108 6-114 113-224 (309)
7 COG1136 SalX ABC-type antimicr 100.0 2.1E-28 4.6E-33 187.8 11.2 91 7-97 122-214 (226)
8 COG1124 DppF ABC-type dipeptid 100.0 3.3E-28 7.2E-33 188.0 10.4 107 7-114 121-230 (252)
9 COG0444 DppD ABC-type dipeptid 99.9 7.7E-28 1.7E-32 191.7 10.5 108 7-115 131-243 (316)
10 COG1127 Ttg2A ABC-type transpo 99.9 9.7E-28 2.1E-32 185.5 9.8 104 11-115 129-235 (263)
11 COG1120 FepC ABC-type cobalami 99.9 2E-27 4.2E-32 185.5 11.5 107 7-114 119-227 (258)
12 TIGR00960 3a0501s02 Type II (G 99.9 3.1E-27 6.7E-32 177.2 11.2 90 7-96 119-209 (216)
13 PRK13537 nodulation ABC transp 99.9 3.4E-27 7.3E-32 187.1 11.8 106 7-113 119-225 (306)
14 TIGR01188 drrA daunorubicin re 99.9 3.7E-27 7.9E-32 186.0 11.9 103 7-110 105-208 (302)
15 TIGR02314 ABC_MetN D-methionin 99.9 3.8E-27 8.2E-32 190.1 11.7 104 7-111 121-226 (343)
16 COG1131 CcmA ABC-type multidru 99.9 5E-27 1.1E-31 185.6 11.5 106 6-112 116-223 (293)
17 cd03226 ABC_cobalt_CbiO_domain 99.9 8.6E-27 1.9E-31 173.8 11.9 91 7-97 107-198 (205)
18 cd03261 ABC_Org_Solvent_Resist 99.9 8E-27 1.7E-31 177.1 11.8 104 8-112 118-223 (235)
19 cd03225 ABC_cobalt_CbiO_domain 99.9 8.7E-27 1.9E-31 174.0 11.7 90 8-97 116-206 (211)
20 cd03235 ABC_Metallic_Cations A 99.9 1E-26 2.3E-31 174.0 11.8 90 8-97 114-204 (213)
21 cd03259 ABC_Carb_Solutes_like 99.9 1E-26 2.2E-31 174.0 10.9 91 7-97 111-203 (213)
22 PRK11650 ugpC glycerol-3-phosp 99.9 1.1E-26 2.4E-31 187.9 11.8 106 7-113 115-222 (356)
23 TIGR02673 FtsE cell division A 99.9 1.5E-26 3.3E-31 173.0 11.4 90 8-97 119-209 (214)
24 cd03219 ABC_Mj1267_LivG_branch 99.9 1.8E-26 4E-31 174.8 11.9 105 7-112 124-229 (236)
25 cd03256 ABC_PhnC_transporter A 99.9 2.1E-26 4.6E-31 174.7 12.3 105 8-113 126-232 (241)
26 cd03265 ABC_DrrA DrrA is the A 99.9 1.5E-26 3.3E-31 174.1 11.4 101 7-108 112-214 (220)
27 PRK13536 nodulation factor exp 99.9 1.7E-26 3.8E-31 185.8 12.3 105 8-113 154-259 (340)
28 PRK11022 dppD dipeptide transp 99.9 1.8E-26 4E-31 184.5 12.3 107 7-114 131-242 (326)
29 PRK11308 dppF dipeptide transp 99.9 1.9E-26 4.1E-31 184.6 12.3 107 7-114 134-243 (327)
30 TIGR01288 nodI ATP-binding ABC 99.9 1.9E-26 4.2E-31 182.0 12.2 105 8-113 117-222 (303)
31 PRK15093 antimicrobial peptide 99.9 1.7E-26 3.8E-31 184.7 12.1 107 7-114 136-247 (330)
32 COG4555 NatA ABC-type Na+ tran 99.9 7.1E-27 1.5E-31 177.5 9.2 104 6-110 113-217 (245)
33 PRK13651 cobalt transporter AT 99.9 1.8E-26 3.9E-31 183.1 12.0 105 7-112 145-251 (305)
34 TIGR03258 PhnT 2-aminoethylpho 99.9 1.4E-26 3E-31 187.9 11.5 106 7-113 118-226 (362)
35 COG4175 ProV ABC-type proline/ 99.9 9E-27 2E-31 186.3 10.2 107 7-114 145-253 (386)
36 TIGR01186 proV glycine betaine 99.9 1.7E-26 3.7E-31 187.6 12.0 107 7-114 110-218 (363)
37 COG3638 ABC-type phosphate/pho 99.9 6.4E-27 1.4E-31 180.6 8.9 108 7-115 128-237 (258)
38 PRK15079 oligopeptide ABC tran 99.9 2.2E-26 4.7E-31 184.6 12.4 106 8-114 142-250 (331)
39 PRK13637 cbiO cobalt transport 99.9 2.5E-26 5.4E-31 180.3 12.3 105 7-112 123-231 (287)
40 TIGR02315 ABC_phnC phosphonate 99.9 2.5E-26 5.3E-31 174.8 11.8 104 8-112 127-232 (243)
41 PRK13647 cbiO cobalt transport 99.9 3.1E-26 6.6E-31 178.6 12.3 90 7-96 119-209 (274)
42 PRK13641 cbiO cobalt transport 99.9 3.4E-26 7.3E-31 179.4 12.5 90 7-96 125-216 (287)
43 cd03296 ABC_CysA_sulfate_impor 99.9 3.4E-26 7.4E-31 174.2 11.7 104 8-112 118-223 (239)
44 PRK13634 cbiO cobalt transport 99.9 4.2E-26 9.2E-31 179.2 12.6 104 7-111 125-231 (290)
45 cd03292 ABC_FtsE_transporter F 99.9 3.4E-26 7.4E-31 170.9 11.4 91 7-97 117-208 (214)
46 cd03293 ABC_NrtD_SsuB_transpor 99.9 3.4E-26 7.4E-31 172.2 11.3 99 7-106 112-214 (220)
47 COG1123 ATPase components of v 99.9 1.9E-26 4.1E-31 194.4 11.0 107 7-114 133-243 (539)
48 PRK13643 cbiO cobalt transport 99.9 4.5E-26 9.8E-31 178.9 12.3 105 7-112 124-230 (288)
49 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.3E-26 7.1E-31 171.6 11.0 91 7-97 121-212 (218)
50 PRK10851 sulfate/thiosulfate t 99.9 3.5E-26 7.6E-31 184.9 11.9 106 7-113 117-224 (353)
51 PRK11432 fbpC ferric transport 99.9 3.2E-26 6.9E-31 185.0 11.7 107 7-114 117-225 (351)
52 COG1118 CysA ABC-type sulfate/ 99.9 2.5E-26 5.3E-31 182.8 10.4 108 6-114 117-226 (345)
53 cd03258 ABC_MetN_methionine_tr 99.9 5.8E-26 1.3E-30 172.0 12.0 105 7-112 121-227 (233)
54 PRK13650 cbiO cobalt transport 99.9 5.2E-26 1.1E-30 177.7 12.1 105 7-112 121-226 (279)
55 PRK11264 putative amino-acid A 99.9 6.3E-26 1.4E-30 173.4 12.3 102 7-109 125-227 (250)
56 TIGR03265 PhnT2 putative 2-ami 99.9 3.6E-26 7.7E-31 184.8 11.5 106 7-113 115-222 (353)
57 cd03218 ABC_YhbG The ABC trans 99.9 5.9E-26 1.3E-30 171.6 12.0 103 8-111 115-218 (232)
58 TIGR02211 LolD_lipo_ex lipopro 99.9 4.7E-26 1E-30 171.1 11.3 90 8-97 123-213 (221)
59 COG4598 HisP ABC-type histidin 99.9 3.8E-26 8.3E-31 171.9 10.7 104 10-114 136-240 (256)
60 cd03294 ABC_Pro_Gly_Bertaine T 99.9 6.8E-26 1.5E-30 176.1 12.4 105 7-112 141-247 (269)
61 cd03268 ABC_BcrA_bacitracin_re 99.9 3.1E-26 6.8E-31 170.9 10.1 91 7-97 107-198 (208)
62 cd03266 ABC_NatA_sodium_export 99.9 3.5E-26 7.6E-31 171.5 10.4 97 7-104 117-214 (218)
63 PRK13638 cbiO cobalt transport 99.9 7.4E-26 1.6E-30 175.7 12.5 101 8-109 118-219 (271)
64 cd03301 ABC_MalK_N The N-termi 99.9 5.1E-26 1.1E-30 170.0 11.2 90 8-97 112-203 (213)
65 TIGR03771 anch_rpt_ABC anchore 99.9 8E-26 1.7E-30 171.2 12.4 104 8-113 95-199 (223)
66 cd03262 ABC_HisP_GlnQ_permease 99.9 6.3E-26 1.4E-30 169.3 11.6 90 8-97 117-207 (213)
67 PRK11000 maltose/maltodextrin 99.9 4.7E-26 1E-30 184.9 11.7 106 7-113 114-221 (369)
68 TIGR01184 ntrCD nitrate transp 99.9 5.5E-26 1.2E-30 172.8 11.3 90 7-96 95-186 (230)
69 PRK09536 btuD corrinoid ABC tr 99.9 7.4E-26 1.6E-30 186.0 12.5 105 7-112 120-225 (402)
70 PRK09473 oppD oligopeptide tra 99.9 7E-26 1.5E-30 181.5 12.1 106 8-114 140-250 (330)
71 PRK09493 glnQ glutamine ABC tr 99.9 1E-25 2.2E-30 171.5 12.3 99 8-107 118-217 (240)
72 PRK11153 metN DL-methionine tr 99.9 6.7E-26 1.5E-30 182.2 11.8 90 7-96 121-212 (343)
73 PRK10908 cell division protein 99.9 8.9E-26 1.9E-30 170.1 11.6 89 8-96 119-208 (222)
74 cd03297 ABC_ModC_molybdenum_tr 99.9 7.8E-26 1.7E-30 169.6 11.3 91 7-97 112-204 (214)
75 TIGR01187 potA spermidine/putr 99.9 7.6E-26 1.6E-30 180.6 11.8 106 7-113 81-188 (325)
76 PRK11831 putative ABC transpor 99.9 1E-25 2.2E-30 175.0 12.2 100 8-108 125-226 (269)
77 cd03298 ABC_ThiQ_thiamine_tran 99.9 9.4E-26 2E-30 168.6 11.4 91 7-97 109-201 (211)
78 PRK13631 cbiO cobalt transport 99.9 1.1E-25 2.3E-30 179.8 12.4 104 7-111 156-261 (320)
79 PRK11300 livG leucine/isoleuci 99.9 1.2E-25 2.5E-30 172.3 12.1 104 8-112 135-240 (255)
80 cd03260 ABC_PstB_phosphate_tra 99.9 1.1E-25 2.4E-30 169.9 11.7 98 8-107 121-221 (227)
81 PRK13646 cbiO cobalt transport 99.9 1.4E-25 3.1E-30 175.8 12.4 103 7-110 125-230 (286)
82 TIGR02142 modC_ABC molybdenum 99.9 1.1E-25 2.3E-30 181.6 11.9 105 7-112 112-218 (354)
83 PRK13644 cbiO cobalt transport 99.9 1.6E-25 3.5E-30 174.6 12.6 90 7-96 117-206 (274)
84 PRK13636 cbiO cobalt transport 99.9 1.5E-25 3.3E-30 175.4 12.4 105 7-112 122-228 (283)
85 PRK10771 thiQ thiamine transpo 99.9 1.4E-25 3.1E-30 170.1 11.9 90 7-96 110-201 (232)
86 PRK13639 cbiO cobalt transport 99.9 1.7E-25 3.7E-30 174.4 12.6 105 7-112 118-223 (275)
87 COG1123 ATPase components of v 99.9 5.8E-26 1.3E-30 191.4 10.6 107 7-114 409-518 (539)
88 PRK09452 potA putrescine/sperm 99.9 1E-25 2.2E-30 183.6 11.7 106 7-113 125-232 (375)
89 PRK11629 lolD lipoprotein tran 99.9 1.2E-25 2.5E-30 170.7 11.3 98 7-105 126-224 (233)
90 TIGR02770 nickel_nikD nickel i 99.9 1.6E-25 3.4E-30 170.0 11.9 106 7-113 103-213 (230)
91 cd03269 ABC_putative_ATPase Th 99.9 1.2E-25 2.5E-30 168.0 11.0 91 7-97 109-200 (210)
92 PRK11144 modC molybdate transp 99.9 1.4E-25 3.1E-30 180.8 12.3 106 7-113 109-216 (352)
93 PRK11231 fecE iron-dicitrate t 99.9 2E-25 4.2E-30 171.7 12.3 89 8-96 120-209 (255)
94 PRK13652 cbiO cobalt transport 99.9 2E-25 4.4E-30 174.1 12.5 105 7-112 118-224 (277)
95 PRK11288 araG L-arabinose tran 99.9 1.1E-25 2.5E-30 187.6 11.7 108 7-115 376-485 (501)
96 COG2884 FtsE Predicted ATPase 99.9 1.3E-25 2.8E-30 169.1 10.7 99 7-105 118-216 (223)
97 cd03257 ABC_NikE_OppD_transpor 99.9 1.5E-25 3.3E-30 168.6 11.1 89 9-97 127-218 (228)
98 cd03224 ABC_TM1139_LivF_branch 99.9 1.8E-25 3.9E-30 167.8 11.5 102 8-110 113-216 (222)
99 PRK11124 artP arginine transpo 99.9 2E-25 4.4E-30 170.1 11.9 105 7-112 122-227 (242)
100 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.3E-25 4.9E-30 169.4 12.0 104 8-112 114-218 (236)
101 PRK10070 glycine betaine trans 99.9 1.7E-25 3.7E-30 183.7 12.2 105 7-112 145-251 (400)
102 PRK10938 putative molybdenum t 99.9 1.5E-25 3.2E-30 186.2 11.9 102 7-109 116-218 (490)
103 TIGR03411 urea_trans_UrtD urea 99.9 2.5E-25 5.4E-30 169.4 12.2 104 7-112 124-228 (242)
104 PRK11607 potG putrescine trans 99.9 1.5E-25 3.3E-30 182.6 11.7 107 7-114 130-238 (377)
105 TIGR03608 L_ocin_972_ABC putat 99.9 1.9E-25 4.2E-30 166.0 11.3 90 7-96 115-204 (206)
106 TIGR03415 ABC_choXWV_ATP choli 99.9 1.6E-25 3.6E-30 182.9 11.8 106 7-113 145-252 (382)
107 PRK10584 putative ABC transpor 99.9 1.7E-25 3.7E-30 169.0 11.1 91 7-97 127-218 (228)
108 PRK15056 manganese/iron transp 99.9 3E-25 6.5E-30 172.6 12.7 103 8-112 124-227 (272)
109 PRK10619 histidine/lysine/argi 99.9 2.8E-25 6E-30 171.0 12.2 100 7-107 132-233 (257)
110 PRK13649 cbiO cobalt transport 99.9 3E-25 6.5E-30 172.9 12.5 89 8-96 126-216 (280)
111 PRK09700 D-allose transporter 99.9 1.7E-25 3.8E-30 186.7 12.0 103 8-111 127-230 (510)
112 TIGR03522 GldA_ABC_ATP gliding 99.9 1.6E-25 3.5E-30 176.7 11.1 89 7-96 114-203 (301)
113 PRK10575 iron-hydroxamate tran 99.9 2.5E-25 5.3E-30 172.3 11.9 102 7-109 128-231 (265)
114 PRK09984 phosphonate/organopho 99.9 2.2E-25 4.8E-30 172.0 11.6 104 7-111 133-238 (262)
115 PRK13635 cbiO cobalt transport 99.9 2.5E-25 5.5E-30 174.0 12.0 101 7-108 121-222 (279)
116 cd03263 ABC_subfamily_A The AB 99.9 2.2E-25 4.8E-30 167.3 11.1 101 7-109 114-215 (220)
117 PRK13633 cobalt transporter AT 99.9 2.9E-25 6.4E-30 173.4 12.2 105 7-112 125-230 (280)
118 PRK10895 lipopolysaccharide AB 99.9 3.1E-25 6.6E-30 169.0 12.0 105 7-112 118-223 (241)
119 PRK11248 tauB taurine transpor 99.9 2.1E-25 4.4E-30 172.4 11.1 91 7-97 109-201 (255)
120 PRK13549 xylose transporter AT 99.9 1.6E-25 3.5E-30 186.9 11.3 105 7-112 385-491 (506)
121 cd03264 ABC_drug_resistance_li 99.9 2.2E-25 4.7E-30 166.6 10.9 89 8-97 112-201 (211)
122 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.7E-25 5.8E-30 169.6 11.6 103 7-110 114-220 (242)
123 PRK10253 iron-enterobactin tra 99.9 4.1E-25 8.9E-30 171.1 12.7 104 8-112 125-230 (265)
124 TIGR03740 galliderm_ABC gallid 99.9 2.5E-25 5.4E-30 167.8 11.2 90 7-96 105-195 (223)
125 PRK11614 livF leucine/isoleuci 99.9 2.3E-25 5.1E-30 169.3 11.1 105 8-113 118-224 (237)
126 PRK14250 phosphate ABC transpo 99.9 4.1E-25 8.8E-30 168.9 12.4 104 7-111 111-217 (241)
127 PRK10261 glutathione transport 99.9 2.2E-25 4.8E-30 190.8 12.2 106 7-113 443-551 (623)
128 COG3842 PotA ABC-type spermidi 99.9 7.2E-26 1.6E-30 183.2 8.5 108 6-114 116-225 (352)
129 COG3840 ThiQ ABC-type thiamine 99.9 1.9E-25 4.1E-30 167.8 10.0 107 7-114 110-218 (231)
130 TIGR00972 3a0107s01c2 phosphat 99.9 4.9E-25 1.1E-29 168.6 12.5 103 8-112 122-229 (247)
131 PRK11701 phnK phosphonate C-P 99.9 4.7E-25 1E-29 169.8 12.3 102 8-110 132-236 (258)
132 TIGR03873 F420-0_ABC_ATP propo 99.9 4.7E-25 1E-29 169.7 12.3 102 8-110 119-221 (256)
133 COG3839 MalK ABC-type sugar tr 99.9 1.7E-25 3.7E-30 180.3 10.1 108 6-114 113-222 (338)
134 TIGR02769 nickel_nikE nickel i 99.9 3.2E-25 6.9E-30 171.7 11.3 107 7-114 130-239 (265)
135 PRK13548 hmuV hemin importer A 99.9 6.2E-25 1.4E-29 169.7 12.8 105 7-112 115-227 (258)
136 PRK13645 cbiO cobalt transport 99.9 4.8E-25 1E-29 172.7 12.3 89 8-96 131-222 (289)
137 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.2E-25 9.1E-30 167.5 11.6 90 8-97 124-214 (224)
138 PRK11247 ssuB aliphatic sulfon 99.9 3.4E-25 7.3E-30 171.9 11.1 90 7-96 114-205 (257)
139 TIGR01277 thiQ thiamine ABC tr 99.9 4.4E-25 9.6E-30 165.6 11.4 91 7-97 109-201 (213)
140 TIGR03410 urea_trans_UrtE urea 99.9 4.3E-25 9.3E-30 167.0 11.3 105 8-113 112-219 (230)
141 PRK13549 xylose transporter AT 99.9 3.5E-25 7.5E-30 184.9 11.8 90 7-96 124-214 (506)
142 cd03214 ABC_Iron-Siderophores_ 99.9 4.7E-25 1E-29 162.0 11.1 88 10-97 81-170 (180)
143 PRK13642 cbiO cobalt transport 99.9 6.2E-25 1.3E-29 171.4 12.4 104 8-112 122-226 (277)
144 TIGR03269 met_CoM_red_A2 methy 99.9 4E-25 8.7E-30 184.9 12.1 104 7-111 149-254 (520)
145 PRK15439 autoinducer 2 ABC tra 99.9 2.7E-25 5.9E-30 186.0 11.0 103 8-111 384-488 (510)
146 PRK10261 glutathione transport 99.9 3.8E-25 8.2E-30 189.3 12.1 106 7-113 146-256 (623)
147 PRK15112 antimicrobial peptide 99.9 6E-25 1.3E-29 170.5 12.1 101 8-109 130-233 (267)
148 PRK15134 microcin C ABC transp 99.9 4.2E-25 9.1E-30 185.3 12.0 106 7-113 405-513 (529)
149 PRK13640 cbiO cobalt transport 99.9 6E-25 1.3E-29 172.0 12.1 103 7-110 124-227 (282)
150 cd03237 ABC_RNaseL_inhibitor_d 99.9 4.5E-25 9.7E-30 170.3 11.2 90 7-96 96-187 (246)
151 PRK15439 autoinducer 2 ABC tra 99.9 4.8E-25 1E-29 184.5 12.2 104 7-111 121-225 (510)
152 TIGR01978 sufC FeS assembly AT 99.9 7.4E-25 1.6E-29 166.4 12.1 102 8-110 124-229 (243)
153 TIGR03005 ectoine_ehuA ectoine 99.9 7.2E-25 1.6E-29 168.1 12.1 103 7-110 127-231 (252)
154 TIGR02323 CP_lyasePhnK phospho 99.9 7.3E-25 1.6E-29 168.0 12.1 102 7-109 128-232 (253)
155 PRK10762 D-ribose transporter 99.9 4E-25 8.7E-30 184.3 11.3 90 7-96 122-212 (501)
156 PRK10762 D-ribose transporter 99.9 4.7E-25 1E-29 183.9 11.6 98 7-105 375-474 (501)
157 PRK14268 phosphate ABC transpo 99.9 9.3E-25 2E-29 168.4 12.4 104 8-113 132-240 (258)
158 TIGR02324 CP_lyasePhnL phospho 99.9 8.3E-25 1.8E-29 164.8 11.7 89 8-96 130-220 (224)
159 TIGR01166 cbiO cobalt transpor 99.9 3.4E-25 7.3E-30 163.5 9.4 82 7-88 108-189 (190)
160 PRK14245 phosphate ABC transpo 99.9 1E-24 2.2E-29 167.1 12.3 104 8-113 124-232 (250)
161 PRK15134 microcin C ABC transp 99.9 4.9E-25 1.1E-29 184.9 11.5 90 7-96 134-228 (529)
162 PRK10418 nikD nickel transport 99.9 1E-24 2.2E-29 167.8 12.3 104 8-112 119-227 (254)
163 PRK09700 D-allose transporter 99.9 5.1E-25 1.1E-29 183.9 11.4 97 8-105 390-488 (510)
164 PRK14242 phosphate transporter 99.9 1.2E-24 2.6E-29 166.8 12.4 103 8-112 127-234 (253)
165 PRK14273 phosphate ABC transpo 99.9 1.2E-24 2.7E-29 167.0 12.4 104 8-113 128-236 (254)
166 PRK03695 vitamin B12-transport 99.9 1.4E-24 3E-29 166.9 12.5 90 7-96 107-204 (248)
167 cd03231 ABC_CcmA_heme_exporter 99.9 8E-25 1.7E-29 163.3 10.8 91 7-97 106-197 (201)
168 PRK13538 cytochrome c biogenes 99.9 8.3E-25 1.8E-29 163.3 10.9 90 7-96 110-200 (204)
169 PRK10982 galactose/methyl gala 99.9 7.8E-25 1.7E-29 182.1 11.9 90 7-96 115-205 (491)
170 PRK13648 cbiO cobalt transport 99.9 1.2E-24 2.7E-29 168.7 12.1 101 8-109 124-225 (269)
171 PRK13543 cytochrome c biogenes 99.9 1E-24 2.2E-29 164.0 11.2 90 8-97 119-209 (214)
172 COG1137 YhbG ABC-type (unclass 99.9 8.1E-25 1.7E-29 166.2 10.5 108 7-115 120-228 (243)
173 cd03300 ABC_PotA_N PotA is an 99.9 1.7E-24 3.8E-29 164.4 12.4 102 7-109 111-214 (232)
174 TIGR02633 xylG D-xylose ABC tr 99.9 8E-25 1.7E-29 182.2 11.4 102 8-110 384-487 (500)
175 cd03267 ABC_NatA_like Similar 99.9 1.1E-24 2.4E-29 166.2 11.3 90 8-97 135-226 (236)
176 PRK09544 znuC high-affinity zi 99.9 1E-24 2.3E-29 168.4 11.2 91 7-97 101-193 (251)
177 TIGR03269 met_CoM_red_A2 methy 99.9 8.5E-25 1.8E-29 182.9 11.5 105 8-113 404-515 (520)
178 PRK13632 cbiO cobalt transport 99.9 1.4E-24 3.1E-29 168.7 12.0 97 8-105 124-221 (271)
179 COG1117 PstB ABC-type phosphat 99.9 5.3E-25 1.1E-29 168.4 9.1 105 8-114 127-236 (253)
180 PRK10982 galactose/methyl gala 99.9 8.3E-25 1.8E-29 181.9 11.0 102 8-110 372-475 (491)
181 cd03252 ABCC_Hemolysin The ABC 99.9 1.8E-24 3.9E-29 164.2 11.6 94 17-112 129-222 (237)
182 PRK14247 phosphate ABC transpo 99.9 2.2E-24 4.9E-29 165.0 12.2 101 8-110 124-229 (250)
183 TIGR02633 xylG D-xylose ABC tr 99.9 1.4E-24 3E-29 180.8 11.9 90 7-96 121-212 (500)
184 cd03299 ABC_ModC_like Archeal 99.9 2.6E-24 5.5E-29 163.9 12.1 89 8-96 111-201 (235)
185 PRK13539 cytochrome c biogenes 99.9 1.7E-24 3.7E-29 162.1 10.9 90 7-97 108-197 (207)
186 PRK10419 nikE nickel transport 99.9 2.4E-24 5.2E-29 167.4 11.7 106 7-113 131-239 (268)
187 cd03238 ABC_UvrA The excision 99.9 3.7E-24 8E-29 158.6 12.0 89 8-96 68-159 (176)
188 COG4608 AppF ABC-type oligopep 99.9 1E-24 2.3E-29 170.6 9.5 108 7-115 89-199 (268)
189 PRK11288 araG L-arabinose tran 99.9 1.5E-24 3.3E-29 180.9 11.1 90 7-96 121-211 (501)
190 PRK14244 phosphate ABC transpo 99.9 3.4E-24 7.3E-29 164.3 12.1 102 8-111 127-233 (251)
191 PRK10744 pstB phosphate transp 99.9 3.2E-24 7E-29 165.5 12.0 103 8-112 134-241 (260)
192 PRK14269 phosphate ABC transpo 99.9 4.1E-24 8.9E-29 163.6 12.2 104 8-113 120-228 (246)
193 PRK14239 phosphate transporter 99.9 4.3E-24 9.4E-29 163.4 12.3 102 9-112 127-233 (252)
194 cd03270 ABC_UvrA_I The excisio 99.9 4.2E-24 9E-29 162.7 12.0 90 8-97 118-210 (226)
195 COG4161 ArtP ABC-type arginine 99.9 1.7E-24 3.7E-29 161.0 9.5 90 7-96 122-212 (242)
196 PRK14254 phosphate ABC transpo 99.9 4.6E-24 1E-28 167.5 12.5 105 8-113 158-267 (285)
197 PRK14267 phosphate ABC transpo 99.9 4.3E-24 9.3E-29 163.7 12.1 103 8-112 127-234 (253)
198 TIGR00968 3a0106s01 sulfate AB 99.9 4.4E-24 9.5E-29 162.8 12.0 105 8-113 112-218 (237)
199 COG0411 LivG ABC-type branched 99.9 3.2E-24 7E-29 165.8 11.3 106 7-113 130-237 (250)
200 PRK13547 hmuV hemin importer A 99.9 4.9E-24 1.1E-28 166.6 12.2 100 7-107 126-236 (272)
201 PRK09580 sufC cysteine desulfu 99.9 9.3E-24 2E-28 161.0 13.3 102 9-111 126-231 (248)
202 PRK10247 putative ABC transpor 99.9 4.6E-24 1E-28 161.6 11.4 91 7-97 117-209 (225)
203 PRK14241 phosphate transporter 99.9 6.7E-24 1.5E-28 163.4 12.5 105 8-113 126-240 (258)
204 PRK14235 phosphate transporter 99.9 6.5E-24 1.4E-28 164.7 12.4 102 8-111 141-247 (267)
205 PRK14248 phosphate ABC transpo 99.9 5.9E-24 1.3E-28 164.7 12.2 100 9-110 143-247 (268)
206 CHL00131 ycf16 sulfate ABC tra 99.9 7.1E-24 1.5E-28 162.2 12.3 103 8-111 131-237 (252)
207 PRK14274 phosphate ABC transpo 99.9 6.7E-24 1.4E-28 163.5 12.2 104 8-113 133-241 (259)
208 cd03251 ABCC_MsbA MsbA is an e 99.9 6.2E-24 1.3E-28 160.8 11.8 97 15-113 127-223 (234)
209 PRK14270 phosphate ABC transpo 99.9 8.1E-24 1.7E-28 162.2 12.5 103 8-112 125-232 (251)
210 PRK14256 phosphate ABC transpo 99.9 7.6E-24 1.6E-28 162.4 12.3 104 8-113 126-234 (252)
211 COG4181 Predicted ABC-type tra 99.9 3.4E-24 7.3E-29 160.1 9.9 90 7-96 127-217 (228)
212 PRK14240 phosphate transporter 99.9 8.1E-24 1.7E-28 161.9 12.3 101 9-111 125-230 (250)
213 cd03245 ABCC_bacteriocin_expor 99.9 4.3E-24 9.2E-29 160.4 10.6 89 8-97 111-210 (220)
214 PRK14251 phosphate ABC transpo 99.9 7.2E-24 1.6E-28 162.3 12.0 104 8-113 125-233 (251)
215 PRK14249 phosphate ABC transpo 99.9 9.4E-24 2E-28 161.8 12.6 101 10-112 127-232 (251)
216 cd03248 ABCC_TAP TAP, the Tran 99.9 5.8E-24 1.3E-28 160.4 11.1 89 8-97 130-220 (226)
217 TIGR02982 heterocyst_DevA ABC 99.9 5.7E-24 1.2E-28 160.2 11.0 91 7-97 122-213 (220)
218 PRK13546 teichoic acids export 99.9 9.8E-24 2.1E-28 164.4 12.6 104 9-113 126-230 (264)
219 PRK14259 phosphate ABC transpo 99.9 9.4E-24 2E-28 164.1 12.4 105 9-114 133-252 (269)
220 PRK14258 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 162.8 12.7 106 8-114 128-244 (261)
221 cd03234 ABCG_White The White s 99.9 7.1E-24 1.5E-28 160.3 11.3 88 10-97 127-216 (226)
222 PRK13540 cytochrome c biogenes 99.9 5.3E-24 1.1E-28 158.6 10.3 90 7-96 108-197 (200)
223 PRK13409 putative ATPase RIL; 99.9 5.5E-24 1.2E-28 181.7 11.6 90 7-96 434-525 (590)
224 cd03254 ABCC_Glucan_exporter_l 99.9 1.1E-23 2.4E-28 158.9 12.0 92 19-112 132-223 (229)
225 PRK14260 phosphate ABC transpo 99.9 1.5E-23 3.2E-28 161.7 12.4 106 8-114 128-242 (259)
226 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.4E-23 3.1E-28 159.4 12.0 92 19-112 132-223 (238)
227 PRK14262 phosphate ABC transpo 99.9 1.5E-23 3.2E-28 160.5 12.0 102 9-112 125-231 (250)
228 PRK14275 phosphate ABC transpo 99.9 1.4E-23 3.1E-28 164.6 12.2 101 9-111 161-266 (286)
229 PRK14243 phosphate transporter 99.9 1.8E-23 3.8E-28 162.0 12.5 104 10-114 131-247 (264)
230 PRK14264 phosphate ABC transpo 99.9 1.8E-23 3.9E-28 165.5 12.7 105 8-113 178-287 (305)
231 PRK14265 phosphate ABC transpo 99.9 1.9E-23 4.2E-28 162.9 12.6 105 9-114 140-257 (274)
232 PRK14253 phosphate ABC transpo 99.9 2.1E-23 4.6E-28 159.5 12.6 99 9-109 124-227 (249)
233 PRK14272 phosphate ABC transpo 99.9 1.9E-23 4.2E-28 159.8 12.3 91 18-110 140-231 (252)
234 PRK14255 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 159.8 12.4 99 10-110 128-231 (252)
235 PRK14236 phosphate transporter 99.9 2.1E-23 4.6E-28 162.2 12.6 103 8-112 146-253 (272)
236 PRK13545 tagH teichoic acids e 99.9 1.5E-23 3.3E-28 177.2 12.6 104 8-112 125-229 (549)
237 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.6E-23 3.5E-28 162.6 11.6 90 7-96 120-210 (255)
238 PRK14238 phosphate transporter 99.9 2E-23 4.4E-28 162.4 11.9 94 17-112 158-252 (271)
239 PRK13541 cytochrome c biogenes 99.9 8.5E-24 1.9E-28 156.9 9.4 89 7-95 104-192 (195)
240 cd03271 ABC_UvrA_II The excisi 99.9 2.4E-23 5.3E-28 162.7 11.9 101 7-107 149-258 (261)
241 TIGR01189 ccmA heme ABC export 99.9 1.2E-23 2.5E-28 156.3 9.6 89 7-96 108-196 (198)
242 cd03253 ABCC_ATM1_transporter 99.9 2.8E-23 6.1E-28 157.4 11.8 90 19-110 130-219 (236)
243 PRK14237 phosphate transporter 99.9 3.6E-23 7.9E-28 160.5 12.6 103 9-113 142-249 (267)
244 PRK10938 putative molybdenum t 99.9 1.9E-23 4.1E-28 173.6 11.0 97 7-104 381-481 (490)
245 PRK14271 phosphate ABC transpo 99.9 4.8E-23 1E-27 160.9 12.4 103 8-112 141-248 (276)
246 PRK14257 phosphate ABC transpo 99.9 4.4E-23 9.5E-28 165.4 12.4 104 9-114 204-312 (329)
247 PRK14261 phosphate ABC transpo 99.9 4.5E-23 9.7E-28 158.2 12.0 101 9-111 128-233 (253)
248 cd03289 ABCC_CFTR2 The CFTR su 99.9 3.9E-23 8.4E-28 162.1 11.8 106 8-115 109-225 (275)
249 COG4152 ABC-type uncharacteriz 99.9 9.2E-24 2E-28 164.4 7.9 90 7-96 111-201 (300)
250 PRK14266 phosphate ABC transpo 99.9 7E-23 1.5E-27 156.8 12.5 103 9-113 125-232 (250)
251 COG4172 ABC-type uncharacteriz 99.9 1.9E-23 4.2E-28 171.6 9.9 106 8-114 136-246 (534)
252 COG0410 LivF ABC-type branched 99.9 6E-23 1.3E-27 157.8 11.8 107 7-114 116-225 (237)
253 PRK14263 phosphate ABC transpo 99.9 6.6E-23 1.4E-27 158.9 12.2 105 8-113 127-243 (261)
254 PRK14246 phosphate ABC transpo 99.9 6.9E-23 1.5E-27 158.5 12.3 103 8-112 131-238 (257)
255 cd03216 ABC_Carb_Monos_I This 99.9 4.8E-23 1E-27 149.7 10.2 71 27-97 83-154 (163)
256 cd03246 ABCC_Protease_Secretio 99.9 4.7E-23 1E-27 150.5 10.0 71 27-97 97-167 (173)
257 TIGR01257 rim_protein retinal- 99.9 6.1E-23 1.3E-27 192.8 12.4 105 8-113 2052-2157(2272)
258 PRK13409 putative ATPase RIL; 99.9 5.6E-23 1.2E-27 175.5 11.2 89 7-96 193-282 (590)
259 cd03244 ABCC_MRP_domain2 Domai 99.9 9E-23 1.9E-27 153.3 10.8 76 21-97 134-209 (221)
260 cd03215 ABC_Carb_Monos_II This 99.9 6.2E-23 1.4E-27 151.0 9.7 71 27-97 105-176 (182)
261 cd03290 ABCC_SUR1_N The SUR do 99.9 1.1E-22 2.5E-27 152.8 11.3 76 21-96 135-212 (218)
262 cd03230 ABC_DR_subfamily_A Thi 99.9 7.3E-23 1.6E-27 149.5 9.9 71 27-97 96-167 (173)
263 COG4172 ABC-type uncharacteriz 99.9 5.2E-23 1.1E-27 169.1 10.1 107 7-114 406-515 (534)
264 COG4148 ModC ABC-type molybdat 99.9 3.8E-23 8.3E-28 163.5 8.9 91 6-96 108-200 (352)
265 PRK14252 phosphate ABC transpo 99.9 1.7E-22 3.8E-27 156.2 12.4 100 9-110 140-244 (265)
266 cd03229 ABC_Class3 This class 99.9 1E-22 2.2E-27 149.4 9.9 71 27-97 101-173 (178)
267 cd03369 ABCC_NFT1 Domain 2 of 99.9 2.4E-22 5.2E-27 150.0 12.0 83 20-104 119-201 (207)
268 PRK15064 ABC transporter ATP-b 99.9 1.7E-22 3.8E-27 169.5 12.3 102 7-112 418-522 (530)
269 cd03288 ABCC_SUR2 The SUR doma 99.9 2.2E-22 4.8E-27 155.2 11.6 93 19-113 149-241 (257)
270 PRK11174 cysteine/glutathione 99.9 1.6E-22 3.6E-27 170.9 11.4 91 22-114 481-571 (588)
271 PRK15064 ABC transporter ATP-b 99.9 2.3E-22 5.1E-27 168.7 11.9 94 7-104 135-230 (530)
272 TIGR01257 rim_protein retinal- 99.9 1.7E-22 3.7E-27 189.9 12.2 106 7-114 1042-1148(2272)
273 PLN03211 ABC transporter G-25; 99.9 2.1E-22 4.5E-27 173.9 11.8 107 7-114 182-295 (659)
274 cd03247 ABCC_cytochrome_bd The 99.9 2.1E-22 4.6E-27 147.5 9.7 73 24-97 96-168 (178)
275 TIGR01842 type_I_sec_PrtD type 99.9 4.3E-22 9.4E-27 167.4 12.6 95 18-113 446-540 (544)
276 cd03217 ABC_FeS_Assembly ABC-t 99.9 3.2E-22 6.9E-27 149.3 10.2 87 21-108 99-187 (200)
277 cd03250 ABCC_MRP_domain1 Domai 99.9 3.3E-22 7.2E-27 148.9 10.1 77 20-96 121-198 (204)
278 cd03232 ABC_PDR_domain2 The pl 99.9 3.2E-22 7E-27 148.4 9.7 72 26-97 108-181 (192)
279 cd03213 ABCG_EPDR ABCG transpo 99.9 4.2E-22 9E-27 148.2 9.9 72 26-97 111-184 (194)
280 PRK11176 lipid transporter ATP 99.9 3E-22 6.4E-27 169.0 10.1 89 24-114 478-566 (582)
281 PRK15177 Vi polysaccharide exp 99.9 7.9E-22 1.7E-26 148.9 11.2 101 11-113 89-190 (213)
282 PRK11819 putative ABC transpor 99.9 5.6E-22 1.2E-26 167.6 11.4 86 7-96 145-231 (556)
283 cd03228 ABCC_MRP_Like The MRP 99.9 4.9E-22 1.1E-26 144.9 9.5 70 27-97 97-166 (171)
284 PRK10636 putative ABC transpor 99.9 4.1E-22 8.8E-27 171.3 10.4 87 7-96 129-217 (638)
285 cd03223 ABCD_peroxisomal_ALDP 99.9 6.7E-22 1.4E-26 144.0 9.8 72 23-97 88-159 (166)
286 cd03222 ABC_RNaseL_inhibitor T 99.9 7.4E-22 1.6E-26 146.4 10.1 70 27-96 72-143 (177)
287 COG4525 TauB ABC-type taurine 99.9 3.3E-22 7.3E-27 151.9 8.3 90 7-96 113-204 (259)
288 PRK10636 putative ABC transpor 99.9 6.7E-22 1.5E-26 169.9 10.9 87 7-96 410-498 (638)
289 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 8.6E-22 1.9E-26 166.3 11.1 87 8-97 424-512 (552)
290 COG1129 MglA ABC-type sugar tr 99.9 9.7E-22 2.1E-26 164.8 11.2 102 7-109 126-228 (500)
291 PRK10535 macrolide transporter 99.9 1.2E-21 2.6E-26 168.6 12.0 90 7-96 125-214 (648)
292 cd03278 ABC_SMC_barmotin Barmo 99.9 1.4E-21 3E-26 146.5 10.9 92 7-102 97-192 (197)
293 PRK11160 cysteine/glutathione 99.9 8.7E-22 1.9E-26 166.9 10.9 105 8-114 447-561 (574)
294 TIGR00955 3a01204 The Eye Pigm 99.9 8.6E-22 1.9E-26 168.6 10.8 107 7-114 141-255 (617)
295 TIGR02203 MsbA_lipidA lipid A 99.9 1.2E-21 2.7E-26 164.5 11.4 104 9-114 441-555 (571)
296 COG4987 CydC ABC-type transpor 99.9 5.8E-22 1.3E-26 166.5 9.3 112 9-121 446-572 (573)
297 PRK10790 putative multidrug tr 99.9 1.7E-21 3.6E-26 165.0 11.6 90 23-114 473-562 (592)
298 PRK11819 putative ABC transpor 99.9 2.7E-21 5.8E-26 163.5 12.6 87 8-97 426-514 (556)
299 COG4988 CydD ABC-type transpor 99.9 1.4E-21 2.9E-26 165.2 10.7 110 9-119 429-552 (559)
300 PRK11147 ABC transporter ATPas 99.9 1.9E-21 4.1E-26 166.8 11.6 92 7-104 139-231 (635)
301 COG2274 SunT ABC-type bacterio 99.9 1.4E-21 3E-26 169.9 11.0 93 21-115 604-696 (709)
302 TIGR03375 type_I_sec_LssB type 99.9 2.4E-21 5.1E-26 167.0 12.1 92 22-115 597-688 (694)
303 COG4604 CeuD ABC-type enteroch 99.9 5.1E-22 1.1E-26 150.9 6.7 107 7-114 116-224 (252)
304 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.5E-21 3.3E-26 164.8 10.2 85 8-96 144-229 (552)
305 COG1132 MdlB ABC-type multidru 99.9 1.5E-21 3.3E-26 164.7 10.1 91 22-114 461-551 (567)
306 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.7E-21 5.8E-26 166.4 11.7 88 23-114 585-672 (686)
307 PRK00349 uvrA excinuclease ABC 99.9 2E-21 4.4E-26 172.9 11.1 104 10-113 472-583 (943)
308 cd03233 ABC_PDR_domain1 The pl 99.9 2.8E-21 6E-26 144.6 9.8 78 20-97 112-192 (202)
309 PRK13657 cyclic beta-1,2-gluca 99.9 2.8E-21 6.1E-26 163.7 10.9 89 23-113 468-556 (588)
310 TIGR02857 CydD thiol reductant 99.9 3.3E-21 7.1E-26 161.2 11.0 74 23-97 455-528 (529)
311 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.2E-21 9.2E-26 165.6 11.9 89 22-114 611-699 (710)
312 TIGR01192 chvA glucan exporter 99.9 2.2E-21 4.7E-26 164.9 9.9 93 20-114 465-557 (585)
313 PLN03073 ABC transporter F fam 99.9 5.9E-21 1.3E-25 166.3 12.7 95 7-105 607-703 (718)
314 TIGR00630 uvra excinuclease AB 99.9 3.9E-21 8.5E-26 170.8 11.7 103 11-113 471-581 (924)
315 COG1119 ModF ABC-type molybden 99.9 4.6E-21 1E-25 148.6 10.4 90 7-96 152-244 (257)
316 COG4559 ABC-type hemin transpo 99.9 5.3E-21 1.1E-25 146.5 10.4 111 7-118 116-233 (259)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 4.9E-21 1.1E-25 136.9 9.6 70 25-97 69-139 (144)
318 PRK11147 ABC transporter ATPas 99.8 3.9E-21 8.5E-26 164.9 10.6 87 8-97 421-509 (635)
319 cd03273 ABC_SMC2_euk Eukaryoti 99.8 8E-21 1.7E-25 146.1 11.3 82 18-100 158-243 (251)
320 cd03279 ABC_sbcCD SbcCD and ot 99.8 6.6E-21 1.4E-25 143.6 10.5 82 15-96 112-204 (213)
321 cd03291 ABCC_CFTR1 The CFTR su 99.8 1.1E-20 2.4E-25 148.7 12.2 86 22-109 155-241 (282)
322 PRK10789 putative multidrug tr 99.8 6E-21 1.3E-25 161.5 11.0 92 21-114 446-537 (569)
323 PLN03073 ABC transporter F fam 99.8 4.9E-21 1.1E-25 166.8 10.8 86 8-96 325-412 (718)
324 TIGR01846 type_I_sec_HlyB type 99.8 5.9E-21 1.3E-25 164.7 10.8 92 21-114 588-679 (694)
325 cd00267 ABC_ATPase ABC (ATP-bi 99.8 9.5E-21 2.1E-25 135.9 10.1 71 27-97 81-152 (157)
326 TIGR01194 cyc_pep_trnsptr cycl 99.8 1E-20 2.3E-25 159.8 11.8 90 8-97 446-542 (555)
327 KOG0055|consensus 99.8 7.8E-21 1.7E-25 170.8 11.4 91 22-114 485-575 (1228)
328 TIGR00954 3a01203 Peroxysomal 99.8 8.3E-21 1.8E-25 163.7 11.0 87 8-97 555-650 (659)
329 TIGR02204 MsbA_rel ABC transpo 99.8 1.3E-20 2.8E-25 158.7 11.6 90 22-113 472-561 (576)
330 TIGR00958 3a01208 Conjugate Tr 99.8 4.9E-21 1.1E-25 165.9 9.3 88 23-114 614-701 (711)
331 TIGR01193 bacteriocin_ABC ABC- 99.8 1.3E-20 2.9E-25 162.7 11.9 90 22-114 607-696 (708)
332 PRK10522 multidrug transporter 99.8 1.4E-20 3E-25 158.6 11.5 90 8-97 426-521 (547)
333 PLN03140 ABC transporter G fam 99.8 1.8E-20 3.9E-25 172.7 12.6 90 7-96 995-1091(1470)
334 COG3845 ABC-type uncharacteriz 99.8 2.2E-20 4.7E-25 155.6 11.0 102 7-109 121-223 (501)
335 COG1129 MglA ABC-type sugar tr 99.8 1.6E-20 3.5E-25 157.5 10.0 111 9-120 383-495 (500)
336 cd03275 ABC_SMC1_euk Eukaryoti 99.8 3.7E-20 8E-25 142.4 11.2 86 22-107 151-240 (247)
337 PTZ00265 multidrug resistance 99.8 2.4E-20 5.1E-25 172.0 11.7 76 21-96 574-650 (1466)
338 TIGR00956 3a01205 Pleiotropic 99.8 3.2E-20 7E-25 170.5 11.9 90 7-96 878-974 (1394)
339 TIGR00956 3a01205 Pleiotropic 99.8 2.2E-20 4.7E-25 171.6 10.8 105 8-113 186-298 (1394)
340 PRK00349 uvrA excinuclease ABC 99.8 4.5E-20 9.8E-25 164.4 12.2 107 8-114 811-926 (943)
341 cd03272 ABC_SMC3_euk Eukaryoti 99.8 4.5E-20 9.7E-25 140.3 10.1 83 17-100 149-235 (243)
342 PTZ00265 multidrug resistance 99.8 4.6E-20 1E-24 170.1 11.7 91 23-114 1355-1451(1466)
343 KOG0058|consensus 99.8 1.8E-20 3.8E-25 161.5 8.0 98 21-120 599-702 (716)
344 PLN03232 ABC transporter C fam 99.8 6.4E-20 1.4E-24 169.4 12.2 90 23-114 1368-1457(1495)
345 COG0488 Uup ATPase components 99.8 3.2E-20 7E-25 157.1 9.3 87 6-96 134-221 (530)
346 COG4586 ABC-type uncharacteriz 99.8 5.2E-20 1.1E-24 145.2 9.8 101 8-109 138-240 (325)
347 cd03276 ABC_SMC6_euk Eukaryoti 99.8 3.9E-20 8.4E-25 138.7 8.7 80 17-96 100-186 (198)
348 KOG0059|consensus 99.8 4.1E-20 8.8E-25 163.9 10.0 107 7-114 679-786 (885)
349 TIGR00630 uvra excinuclease AB 99.8 9.4E-20 2E-24 162.1 12.1 105 8-112 809-922 (924)
350 PRK00635 excinuclease ABC subu 99.8 8.3E-20 1.8E-24 169.7 12.0 106 9-114 791-905 (1809)
351 KOG0055|consensus 99.8 2.2E-20 4.7E-25 168.0 7.9 100 21-122 1121-1225(1228)
352 PLN03130 ABC transporter C fam 99.8 1E-19 2.2E-24 169.0 12.2 90 23-114 1371-1460(1622)
353 TIGR02868 CydC thiol reductant 99.8 5.7E-20 1.2E-24 153.7 9.4 63 23-86 467-529 (529)
354 PRK00635 excinuclease ABC subu 99.8 1.2E-19 2.7E-24 168.5 11.6 104 10-113 459-570 (1809)
355 cd03240 ABC_Rad50 The catalyti 99.8 1.4E-19 2.9E-24 136.2 9.0 80 19-98 108-195 (204)
356 TIGR00957 MRP_assoc_pro multi 99.8 2.8E-19 6.1E-24 165.3 12.1 90 23-114 1418-1507(1522)
357 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.7E-19 3.7E-24 136.6 8.6 93 8-101 109-205 (212)
358 KOG0057|consensus 99.8 2.2E-19 4.9E-24 151.2 9.8 93 21-115 482-574 (591)
359 KOG0061|consensus 99.8 1.8E-19 3.8E-24 154.8 9.3 107 6-113 145-258 (613)
360 TIGR01271 CFTR_protein cystic 99.8 4.2E-19 9E-24 164.0 12.1 104 9-114 1325-1439(1490)
361 COG4107 PhnK ABC-type phosphon 99.8 7.4E-19 1.6E-23 132.2 10.8 91 7-97 131-224 (258)
362 COG4619 ABC-type uncharacteriz 99.8 3.7E-19 7.9E-24 132.8 9.0 89 8-96 114-205 (223)
363 PLN03140 ABC transporter G fam 99.8 1.9E-19 4.2E-24 166.0 8.8 106 8-114 313-426 (1470)
364 PTZ00243 ABC transporter; Prov 99.8 7.3E-19 1.6E-23 162.9 12.2 90 23-114 1442-1532(1560)
365 PTZ00243 ABC transporter; Prov 99.8 1.3E-18 2.9E-23 161.2 12.4 97 15-112 771-867 (1560)
366 PLN03232 ABC transporter C fam 99.8 8.8E-19 1.9E-23 161.9 11.1 89 23-113 737-826 (1495)
367 COG4674 Uncharacterized ABC-ty 99.8 9E-19 2E-23 133.1 6.9 90 6-96 127-217 (249)
368 TIGR00957 MRP_assoc_pro multi 99.8 2.2E-18 4.7E-23 159.5 10.6 91 21-112 755-847 (1522)
369 COG4618 ArpD ABC-type protease 99.8 5.9E-18 1.3E-22 142.0 11.6 92 23-115 469-560 (580)
370 TIGR01271 CFTR_protein cystic 99.8 4.8E-18 1E-22 157.0 11.1 90 21-112 543-633 (1490)
371 COG4778 PhnL ABC-type phosphon 99.7 2.5E-18 5.5E-23 128.7 7.1 89 8-96 133-223 (235)
372 cd03239 ABC_SMC_head The struc 99.7 1.2E-17 2.6E-22 123.6 10.6 73 27-99 95-171 (178)
373 PLN03130 ABC transporter C fam 99.7 6.4E-18 1.4E-22 157.2 11.2 90 22-113 736-826 (1622)
374 COG4133 CcmA ABC-type transpor 99.7 8.8E-18 1.9E-22 126.4 8.9 85 6-90 110-194 (209)
375 cd03277 ABC_SMC5_euk Eukaryoti 99.7 7.1E-18 1.5E-22 127.9 8.3 91 6-96 105-203 (213)
376 COG0488 Uup ATPase components 99.7 2.3E-17 5E-22 139.8 10.1 86 8-96 420-507 (530)
377 COG0396 sufC Cysteine desulfur 99.7 9.1E-17 2E-21 124.0 11.9 106 8-114 124-233 (251)
378 COG1245 Predicted ATPase, RNas 99.7 3.1E-17 6.8E-22 136.7 9.1 91 6-96 193-284 (591)
379 COG1134 TagH ABC-type polysacc 99.7 1.1E-16 2.4E-21 124.1 10.5 107 7-114 128-235 (249)
380 COG4136 ABC-type uncharacteriz 99.7 2.4E-17 5.3E-22 121.5 6.0 90 7-96 115-205 (213)
381 cd03241 ABC_RecN RecN ATPase i 99.7 1.2E-16 2.5E-21 125.0 9.1 75 25-100 169-247 (276)
382 COG0178 UvrA Excinuclease ATPa 99.7 8.3E-17 1.8E-21 140.6 9.0 96 20-115 816-919 (935)
383 cd03227 ABC_Class2 ABC-type Cl 99.7 1.7E-16 3.7E-21 115.1 9.3 73 25-97 76-152 (162)
384 COG1101 PhnK ABC-type uncharac 99.7 1.2E-16 2.7E-21 122.8 8.8 87 10-96 130-220 (263)
385 TIGR00618 sbcc exonuclease Sbc 99.7 2.2E-16 4.8E-21 141.9 10.8 82 18-99 942-1034(1042)
386 KOG0062|consensus 99.7 1E-16 2.2E-21 134.7 7.0 84 10-96 181-266 (582)
387 COG4170 SapD ABC-type antimicr 99.7 1.1E-16 2.3E-21 123.6 5.7 111 4-115 130-248 (330)
388 PHA02562 46 endonuclease subun 99.7 2.1E-16 4.6E-21 132.7 8.1 76 20-97 462-548 (562)
389 COG1245 Predicted ATPase, RNas 99.7 2.1E-16 4.5E-21 131.8 7.8 89 8-96 437-527 (591)
390 COG4167 SapF ABC-type antimicr 99.6 8.8E-16 1.9E-20 116.4 9.2 107 8-115 130-239 (267)
391 TIGR00634 recN DNA repair prot 99.6 6.5E-16 1.4E-20 131.4 9.3 72 25-97 439-514 (563)
392 COG5265 ATM1 ABC-type transpor 99.6 2.9E-16 6.3E-21 129.7 5.3 90 23-114 396-485 (497)
393 PRK03918 chromosome segregatio 99.6 1.3E-15 2.9E-20 133.7 9.7 77 21-97 783-865 (880)
394 KOG0054|consensus 99.6 1.9E-15 4E-20 138.3 10.6 107 7-114 613-730 (1381)
395 KOG0927|consensus 99.6 9.4E-16 2E-20 129.5 8.1 85 10-96 204-290 (614)
396 KOG0927|consensus 99.6 7.7E-16 1.7E-20 130.0 6.8 85 9-96 491-577 (614)
397 KOG0062|consensus 99.6 2.3E-15 5E-20 126.5 8.7 90 4-96 456-550 (582)
398 PRK10246 exonuclease subunit S 99.6 4.5E-15 9.7E-20 133.8 10.9 78 20-97 943-1029(1047)
399 TIGR02168 SMC_prok_B chromosom 99.6 1.9E-15 4.2E-20 134.0 8.2 82 19-101 1082-1167(1179)
400 COG3845 ABC-type uncharacteriz 99.6 3.2E-15 6.8E-20 124.9 9.0 107 8-115 384-492 (501)
401 PRK10869 recombination and rep 99.6 4.6E-15 1E-19 126.3 9.7 72 25-97 429-504 (553)
402 cd03280 ABC_MutS2 MutS2 homolo 99.6 1.3E-15 2.9E-20 113.7 5.6 86 10-96 75-161 (200)
403 KOG0054|consensus 99.6 7.8E-15 1.7E-19 134.3 10.3 91 23-115 1272-1362(1381)
404 KOG0056|consensus 99.6 2.2E-15 4.8E-20 127.0 5.9 91 22-114 670-760 (790)
405 COG4138 BtuD ABC-type cobalami 99.6 1.2E-15 2.6E-20 114.9 3.2 107 8-114 107-226 (248)
406 TIGR00606 rad50 rad50. This fa 99.6 8.8E-15 1.9E-19 134.2 9.3 72 22-93 1195-1278(1311)
407 PRK01156 chromosome segregatio 99.6 2.1E-14 4.5E-19 127.1 10.1 76 22-97 797-881 (895)
408 KOG0065|consensus 99.5 2.8E-15 6.1E-20 136.0 3.5 90 7-96 906-1002(1391)
409 TIGR02169 SMC_prok_A chromosom 99.5 3.6E-14 7.9E-19 126.5 8.0 82 19-101 1067-1152(1164)
410 PF00005 ABC_tran: ABC transpo 99.5 3.8E-14 8.3E-19 98.6 5.6 49 7-55 85-137 (137)
411 COG0178 UvrA Excinuclease ATPa 99.5 1.4E-13 3E-18 120.7 9.9 96 20-115 475-577 (935)
412 PRK02224 chromosome segregatio 99.5 2.5E-13 5.3E-18 119.8 8.8 77 22-98 777-866 (880)
413 COG4178 ABC-type uncharacteriz 99.4 5.6E-13 1.2E-17 114.3 8.8 87 9-96 492-584 (604)
414 smart00534 MUTSac ATPase domai 99.4 3.8E-13 8.3E-18 99.5 5.3 85 9-94 44-130 (185)
415 KOG0066|consensus 99.4 6.8E-13 1.5E-17 111.3 7.0 78 11-91 688-766 (807)
416 KOG0066|consensus 99.4 2.4E-13 5.1E-18 114.0 3.5 87 7-96 392-480 (807)
417 cd03285 ABC_MSH2_euk MutS2 hom 99.4 8.1E-13 1.8E-17 100.9 6.1 83 8-96 74-163 (222)
418 cd03242 ABC_RecF RecF is a rec 99.4 1.4E-12 3E-17 101.7 6.8 66 23-92 180-255 (270)
419 cd03243 ABC_MutS_homologs The 99.4 5.7E-13 1.2E-17 99.5 4.2 75 21-96 86-161 (202)
420 COG0419 SbcC ATPase involved i 99.3 2.6E-11 5.6E-16 108.1 9.6 78 21-98 810-895 (908)
421 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.4E-11 3E-16 93.1 6.6 83 8-91 73-156 (204)
422 PF02463 SMC_N: RecF/RecN/SMC 99.2 8.3E-11 1.8E-15 88.2 10.0 80 23-103 133-216 (220)
423 TIGR00611 recf recF protein. A 99.2 2.3E-11 5.1E-16 99.0 6.9 63 25-90 274-345 (365)
424 PRK00064 recF recombination pr 99.2 3.7E-11 8.1E-16 97.5 7.2 67 22-91 269-344 (361)
425 COG4615 PvdE ABC-type sideroph 99.2 6.6E-11 1.4E-15 98.0 7.2 90 7-96 424-519 (546)
426 cd01124 KaiC KaiC is a circadi 99.2 9.4E-11 2E-15 85.1 7.0 83 14-96 59-160 (187)
427 PF13304 AAA_21: AAA domain; P 99.2 1.9E-10 4.2E-15 83.2 8.3 69 21-89 231-302 (303)
428 KOG0063|consensus 99.2 7.6E-11 1.6E-15 98.4 6.8 90 7-96 194-284 (592)
429 TIGR02680 conserved hypothetic 99.1 1.1E-10 2.4E-15 108.0 7.7 66 19-87 1240-1317(1353)
430 KOG2355|consensus 99.1 1E-10 2.2E-15 90.2 5.9 84 22-106 143-228 (291)
431 COG2401 ABC-type ATPase fused 99.1 2.3E-10 4.9E-15 95.4 7.8 90 7-96 486-580 (593)
432 PRK00409 recombination and DNA 99.1 9.1E-11 2E-15 103.6 5.5 75 20-95 384-460 (782)
433 cd03283 ABC_MutS-like MutS-lik 99.1 8.7E-10 1.9E-14 82.9 8.9 62 30-91 89-153 (199)
434 KOG0060|consensus 99.0 8.1E-10 1.8E-14 94.5 8.0 69 25-96 569-637 (659)
435 KOG0063|consensus 99.0 2.3E-10 5E-15 95.6 4.6 89 8-96 438-528 (592)
436 cd03281 ABC_MSH5_euk MutS5 hom 99.0 1.8E-09 3.8E-14 81.9 8.2 63 29-91 93-159 (213)
437 TIGR01069 mutS2 MutS2 family p 99.0 1.1E-09 2.5E-14 96.6 6.6 71 19-90 378-449 (771)
438 KOG0065|consensus 98.9 2.7E-09 5.8E-14 97.7 5.3 105 7-112 236-348 (1391)
439 cd03284 ABC_MutS1 MutS1 homolo 98.8 7.6E-09 1.6E-13 78.6 5.9 70 24-95 83-162 (216)
440 PRK14079 recF recombination pr 98.8 1.3E-08 2.7E-13 82.5 5.5 47 25-71 262-317 (349)
441 PF13558 SbcCD_C: Putative exo 98.7 2.4E-08 5.2E-13 66.5 5.4 51 21-71 27-90 (90)
442 KOG0064|consensus 98.7 1.1E-08 2.4E-13 87.3 4.5 64 25-91 611-674 (728)
443 PTZ00132 GTP-binding nuclear p 98.7 3.4E-08 7.4E-13 73.7 5.2 44 30-73 156-204 (215)
444 cd03286 ABC_MSH6_euk MutS6 hom 98.6 3.2E-07 7E-12 70.1 7.9 67 25-91 88-158 (218)
445 COG1196 Smc Chromosome segrega 98.5 3.2E-07 7E-12 84.1 7.2 84 21-105 1061-1148(1163)
446 PRK13695 putative NTPase; Prov 98.4 8.2E-07 1.8E-11 64.6 6.2 70 23-96 75-146 (174)
447 cd03287 ABC_MSH3_euk MutS3 hom 98.4 2.1E-06 4.6E-11 65.8 8.4 69 23-91 87-159 (222)
448 KOG0964|consensus 98.3 3.4E-07 7.3E-12 82.0 3.6 82 22-104 1093-1178(1200)
449 PRK06067 flagellar accessory p 98.3 3.2E-06 7E-11 64.1 8.5 63 26-88 100-167 (234)
450 PF13175 AAA_15: AAA ATPase do 98.3 1.9E-06 4E-11 69.1 7.4 68 21-88 336-414 (415)
451 PRK13830 conjugal transfer pro 98.3 2.5E-06 5.5E-11 76.0 7.7 49 42-90 650-699 (818)
452 PRK08533 flagellar accessory p 98.2 4.9E-06 1.1E-10 63.8 7.5 60 27-87 96-163 (230)
453 PRK13891 conjugal transfer pro 98.2 3.8E-06 8.2E-11 75.2 7.6 55 37-91 680-735 (852)
454 TIGR03185 DNA_S_dndD DNA sulfu 98.2 3.2E-06 7E-11 73.4 6.9 64 22-89 547-617 (650)
455 cd01125 repA Hexameric Replica 98.1 2.6E-06 5.7E-11 65.0 3.4 47 40-87 107-160 (239)
456 PF13166 AAA_13: AAA domain 98.1 2.7E-05 5.9E-10 67.6 9.5 70 22-91 496-576 (712)
457 cd01128 rho_factor Transcripti 98.0 2.8E-06 6.1E-11 66.2 2.8 70 23-96 126-204 (249)
458 COG3910 Predicted ATPase [Gene 98.0 6.3E-05 1.4E-09 57.5 9.1 77 19-96 122-199 (233)
459 COG4637 Predicted ATPase [Gene 98.0 3.9E-05 8.5E-10 62.3 7.7 66 25-91 269-336 (373)
460 cd01120 RecA-like_NTPases RecA 97.9 7.6E-05 1.6E-09 51.7 7.2 65 25-89 66-140 (165)
461 TIGR02858 spore_III_AA stage I 97.8 9.4E-05 2E-09 58.4 7.7 46 36-88 186-231 (270)
462 PRK13873 conjugal transfer ATP 97.8 7.4E-05 1.6E-09 66.5 6.9 50 41-90 632-682 (811)
463 TIGR02655 circ_KaiC circadian 97.7 2.4E-06 5.1E-11 72.0 -3.4 73 14-96 103-187 (484)
464 KOG0933|consensus 97.6 3.4E-05 7.3E-10 69.7 2.2 79 18-97 1074-1156(1174)
465 PRK13898 type IV secretion sys 97.6 0.00025 5.3E-09 63.1 7.4 52 40-91 638-690 (800)
466 PRK05399 DNA mismatch repair p 97.5 0.00055 1.2E-08 61.6 8.5 72 21-94 661-738 (854)
467 KOG0962|consensus 97.5 0.00025 5.3E-09 65.7 6.0 65 27-91 1184-1259(1294)
468 KOG0996|consensus 97.4 0.00017 3.8E-09 66.0 4.0 77 21-98 1190-1270(1293)
469 COG0497 RecN ATPase involved i 97.3 0.0013 2.9E-08 56.6 8.6 71 25-96 430-504 (557)
470 KOG0018|consensus 97.3 0.00034 7.4E-09 63.6 5.0 80 19-102 1044-1127(1141)
471 PRK08699 DNA polymerase III su 97.0 0.00093 2E-08 53.9 4.7 42 48-90 116-157 (325)
472 cd01131 PilT Pilus retraction 97.0 0.002 4.4E-08 48.0 5.5 54 36-96 66-119 (198)
473 TIGR00152 dephospho-CoA kinase 96.9 0.00035 7.5E-09 51.4 0.7 66 29-96 60-128 (188)
474 PRK14088 dnaA chromosomal repl 96.6 0.0053 1.1E-07 51.4 6.1 57 43-99 193-252 (440)
475 PF00488 MutS_V: MutS domain V 96.6 0.026 5.6E-07 43.5 9.2 70 21-90 97-170 (235)
476 COG4694 Uncharacterized protei 96.6 0.008 1.7E-07 52.2 6.8 70 21-90 523-601 (758)
477 PRK06793 fliI flagellum-specif 96.3 0.0072 1.6E-07 50.8 4.9 70 23-94 218-294 (432)
478 TIGR02788 VirB11 P-type DNA tr 96.1 0.012 2.6E-07 46.8 5.3 56 34-96 208-263 (308)
479 smart00382 AAA ATPases associa 96.1 0.1 2.2E-06 34.0 8.9 63 23-85 57-125 (148)
480 TIGR03880 KaiC_arch_3 KaiC dom 96.0 0.023 5E-07 42.6 6.3 54 43-96 106-174 (224)
481 PF13514 AAA_27: AAA domain 96.0 0.017 3.7E-07 53.2 6.5 69 22-91 1021-1097(1111)
482 TIGR01070 mutS1 DNA mismatch r 95.7 0.069 1.5E-06 48.3 8.7 70 21-90 646-719 (840)
483 PRK07721 fliI flagellum-specif 95.6 0.028 6.2E-07 47.3 5.8 71 25-96 222-325 (438)
484 TIGR01420 pilT_fam pilus retra 95.5 0.03 6.4E-07 45.3 5.2 54 36-96 187-240 (343)
485 COG1195 RecF Recombinational D 95.3 0.03 6.4E-07 46.2 4.8 63 24-90 273-344 (363)
486 PRK06893 DNA replication initi 95.2 0.045 9.7E-07 41.7 5.2 45 42-86 89-134 (229)
487 COG4938 Uncharacterized conser 94.4 0.075 1.6E-06 43.2 4.7 52 37-88 253-304 (374)
488 cd00009 AAA The AAA+ (ATPases 94.1 0.19 4.2E-06 33.2 5.7 54 33-87 73-131 (151)
489 PTZ00454 26S protease regulato 94.1 0.19 4.2E-06 41.7 6.8 54 36-89 230-297 (398)
490 cd00561 CobA_CobO_BtuR ATP:cor 93.5 0.17 3.7E-06 37.1 4.8 63 33-96 82-150 (159)
491 COG3593 Predicted ATP-dependen 93.5 0.11 2.3E-06 45.4 4.2 63 33-96 286-354 (581)
492 PRK04296 thymidine kinase; Pro 93.4 0.26 5.7E-06 36.4 5.7 50 43-96 77-137 (190)
493 PRK09302 circadian clock prote 93.1 0.088 1.9E-06 44.5 3.2 45 43-87 129-178 (509)
494 TIGR00929 VirB4_CagE type IV s 92.9 0.32 6.9E-06 42.9 6.4 49 42-90 627-676 (785)
495 PF09818 ABC_ATPase: Predicted 92.5 0.41 8.9E-06 40.6 6.2 72 25-96 321-409 (448)
496 PRK00454 engB GTP-binding prot 92.5 0.21 4.5E-06 35.9 4.1 51 21-75 142-195 (196)
497 COG1106 Predicted ATPases [Gen 92.3 0.53 1.2E-05 39.0 6.6 71 20-90 245-317 (371)
498 PRK14087 dnaA chromosomal repl 92.0 0.7 1.5E-05 38.9 7.2 50 38-87 200-250 (450)
499 cd01122 GP4d_helicase GP4d_hel 92.0 0.27 6E-06 37.6 4.4 55 32-86 126-191 (271)
500 TIGR03881 KaiC_arch_4 KaiC dom 91.4 0.82 1.8E-05 34.2 6.3 53 44-96 121-185 (229)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=4.6e-31 Score=201.52 Aligned_cols=89 Identities=36% Similarity=0.504 Sum_probs=86.3
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++++|+.+.++.+|.+|||||||||+|||||+++|+++++|||||+|||+...++.+.+++++++|.|.|+|||++.
T Consensus 118 ~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~ 197 (240)
T COG1126 118 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197 (240)
T ss_pred HHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hccee
Q psy6940 88 EARQ-ANTVF 96 (123)
Q Consensus 88 ~~~~-~d~v~ 96 (123)
++.. ||||+
T Consensus 198 FAr~Vadrvi 207 (240)
T COG1126 198 FAREVADRVI 207 (240)
T ss_pred HHHHhhheEE
Confidence 9999 99998
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6e-30 Score=199.17 Aligned_cols=109 Identities=28% Similarity=0.331 Sum_probs=99.3
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..+++++++|+.+++++++++|||||+|||.|||||+.+|++++|||||+|+|+.++..++++|.+++++|+||++||||
T Consensus 119 ~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 119 KVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred HHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHh-hcceee----ecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFG----GFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~----~~~~~~~~~~~~~~~~~ 114 (123)
+..+.. +|+++. ..+.|......+.+++.
T Consensus 199 L~~v~~~~D~vi~Ln~~~~~~G~~~~~~~~~~l~ 232 (254)
T COG1121 199 LGLVMAYFDRVICLNRHLIASGPPEEVLTEENLE 232 (254)
T ss_pred cHHhHhhCCEEEEEcCeeEeccChhhccCHHHHH
Confidence 999988 999992 23577777777766665
No 3
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=199.56 Aligned_cols=105 Identities=30% Similarity=0.358 Sum_probs=92.7
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+..++++.+|+.++.+.+|.+|||||||||+|||||+.+|++|++|||||+|||...+.+.++|++++++ |.||++|||
T Consensus 121 RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 121 RVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4567899999999999999999999999999999999999999999999999999999999999999877 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCch
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
.|+.+.. |||+.. +=+|+.+......
T Consensus 201 Em~Vvk~ic~rVav-m~~G~lvE~G~v~ 227 (339)
T COG1135 201 EMEVVKRICDRVAV-LDQGRLVEEGTVS 227 (339)
T ss_pred hHHHHHHHhhhheE-eeCCEEEEeccHH
Confidence 9999999 999982 3334444333333
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6e-29 Score=192.50 Aligned_cols=90 Identities=31% Similarity=0.416 Sum_probs=86.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
+.++++.+|+.++.+++|++|||||||||+|||||+.+|++++|||||++||..++..+.+.+.++.++ ++||++||||
T Consensus 111 a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd 190 (248)
T COG1116 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190 (248)
T ss_pred HHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 567899999999999999999999999999999999999999999999999999999999999998755 9999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. +|||+
T Consensus 191 i~EAv~LsdRiv 202 (248)
T COG1116 191 VDEAVYLADRVV 202 (248)
T ss_pred HHHHHhhhCEEE
Confidence 999998 99998
No 5
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.8e-29 Score=191.92 Aligned_cols=108 Identities=34% Similarity=0.396 Sum_probs=95.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++++++|.+|||||||||+||.+|+.+|+++||||||+||||.+++.+++.+++++.+ |+|||++|||
T Consensus 119 v~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd 198 (235)
T COG1122 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD 198 (235)
T ss_pred HHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 346777889999999999999999999999999999999999999999999999999999999999887 7999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
++++.. ||+++. +-.|+......+.+++.
T Consensus 199 ~~~~~~~ad~v~v-l~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 199 LELVLEYADRVVV-LDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHHhhCCEEEE-EECCEEeecCCHHHHhh
Confidence 999998 999984 44566655555555543
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-28 Score=192.75 Aligned_cols=108 Identities=29% Similarity=0.403 Sum_probs=98.0
Q ss_pred CHHHHHHHcCcc--hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE
Q psy6940 6 RPAEILTRTRDF--ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82 (123)
Q Consensus 6 ~~~e~l~~~~l~--~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv 82 (123)
+.+|+++.+++. .+++++|++|||||||||.+||||+.+|+++++||||++|||.++.++.+.+.+++++ |+|||+|
T Consensus 113 r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV 192 (309)
T COG1125 113 RADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV 192 (309)
T ss_pred HHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE
Confidence 456788888886 4899999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred eCCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 83 THYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 83 tH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|||++++.. +|++.. +..|+....-+|.+++
T Consensus 193 THDidEA~kLadri~v-m~~G~i~Q~~~P~~il 224 (309)
T COG1125 193 THDIDEALKLADRIAV-MDAGEIVQYDTPDEIL 224 (309)
T ss_pred ecCHHHHHhhhceEEE-ecCCeEEEeCCHHHHH
Confidence 999999998 999874 5678888777777776
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2.1e-28 Score=187.82 Aligned_cols=91 Identities=34% Similarity=0.423 Sum_probs=84.4
Q ss_pred HHHHHHHcCcchhcC-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDFALRK-LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~-~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+|+.+..+ ++|.+|||||||||+|||||+++|++++.||||.+||+.+.+.+++++.+++++ |+|||+|||
T Consensus 122 ~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 456788889987666 889999999999999999999999999999999999999999999999999866 999999999
Q ss_pred CHHHHHhhcceee
Q psy6940 85 YIEEARQANTVFG 97 (123)
Q Consensus 85 ~~~~~~~~d~v~~ 97 (123)
|...+..|||++.
T Consensus 202 d~~lA~~~dr~i~ 214 (226)
T COG1136 202 DPELAKYADRVIE 214 (226)
T ss_pred CHHHHHhCCEEEE
Confidence 9999999999983
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.3e-28 Score=187.98 Aligned_cols=107 Identities=28% Similarity=0.335 Sum_probs=96.7
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+|+. .+.+++|++|||||+||+||||||+.+|++||+|||||+||...+.++++++.+++++ |.|+|+|||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 56789999975 6899999999999999999999999999999999999999999999999999999876 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+..+.+ |||++. +..|+.+.......+.
T Consensus 201 dl~~v~~~cdRi~V-m~~G~ivE~~~~~~l~ 230 (252)
T COG1124 201 DLALVEHMCDRIAV-MDNGQIVEIGPTEELL 230 (252)
T ss_pred cHHHHHHHhhheee-eeCCeEEEeechhhhh
Confidence 9999999 999884 6777777777666654
No 9
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.7e-28 Score=191.70 Aligned_cols=108 Identities=28% Similarity=0.347 Sum_probs=98.6
Q ss_pred HHHHHHHcCcch---hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE
Q psy6940 7 PAEILTRTRDFA---LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~~---~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv 82 (123)
+.++++.+++.+ ..+.+|++|||||||||.||.|++.+|+++|.||||++||...+.++.++|++++++ |.++|+|
T Consensus 131 a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilI 210 (316)
T COG0444 131 AIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI 210 (316)
T ss_pred HHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788888753 679999999999999999999999999999999999999999999999999999875 9999999
Q ss_pred eCCHHHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 83 THYIEEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 83 tH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
|||+..+.+ ||+|+. ||+|+.+......+++.
T Consensus 211 THDl~vva~~aDri~V-MYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 211 THDLGVVAEIADRVAV-MYAGRIVEEGPVEEIFK 243 (316)
T ss_pred eCCHHHHHHhcceEEE-EECcEEEEeCCHHHHhc
Confidence 999999999 999875 89999999888887763
No 10
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=9.7e-28 Score=185.50 Aligned_cols=104 Identities=32% Similarity=0.417 Sum_probs=94.3
Q ss_pred HHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHH
Q psy6940 11 LTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEE 88 (123)
Q Consensus 11 l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~ 88 (123)
++.+|+... .+++|.+|||||+||+++|||++.+|+++++||||+||||.+...+-++|+++++. |.|+++||||++.
T Consensus 129 L~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s 208 (263)
T COG1127 129 LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS 208 (263)
T ss_pred HHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH
Confidence 566777776 89999999999999999999999999999999999999999999999999999987 9999999999999
Q ss_pred HHh-hcceeeecccccccccCCchhhhh
Q psy6940 89 ARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 89 ~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
+.. ||+++. +++||.....+++++..
T Consensus 209 ~~~i~Drv~~-L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 209 LLTIADRVAV-LADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhhhceEEE-EeCCEEEEeCCHHHHHh
Confidence 998 999884 67788877777777764
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=2e-27 Score=185.54 Aligned_cols=107 Identities=26% Similarity=0.259 Sum_probs=94.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++++++..+|||||||||.|||||+.+|++++|||||+.||...+-++++++++++++ |.|||++.||
T Consensus 119 v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD 198 (258)
T COG1120 119 VEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD 198 (258)
T ss_pred HHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 345699999999999999999999999999999999999999999999999999999999999999854 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++.+.+ ||+++. +-+|+..+.+.+.+.+
T Consensus 199 lN~A~ryad~~i~-lk~G~i~a~G~p~evl 227 (258)
T COG1120 199 LNLAARYADHLIL-LKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhCCEEEE-EECCeEEeecCcchhc
Confidence 999988 999983 3455555555555443
No 12
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.95 E-value=3.1e-27 Score=177.18 Aligned_cols=90 Identities=29% Similarity=0.475 Sum_probs=84.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++
T Consensus 119 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 119 VSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678889998889999999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 199 ~~~~~~~d~i~ 209 (216)
T TIGR00960 199 NLVETYRHRTL 209 (216)
T ss_pred HHHHHhCCEEE
Confidence 99987 99987
No 13
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.95 E-value=3.4e-27 Score=187.08 Aligned_cols=106 Identities=28% Similarity=0.454 Sum_probs=91.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++++||+|||||++||+||+++|+++||||||+||||.+++.++++|++++++|+|||++||++
T Consensus 119 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l 198 (306)
T PRK13537 119 VPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM 198 (306)
T ss_pred HHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 34678889998899999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++.. ||+++. +-.|+.....++.++
T Consensus 199 ~e~~~~~d~i~i-l~~G~i~~~g~~~~l 225 (306)
T PRK13537 199 EEAERLCDRLCV-IEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 99988 999872 234444444444433
No 14
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=3.7e-27 Score=186.03 Aligned_cols=103 Identities=32% Similarity=0.490 Sum_probs=90.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++.+..++++.+|||||||||+||+||+.+|+++||||||+||||.+++.+++.|++++++|.|||++||++
T Consensus 105 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 105 AEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184 (302)
T ss_pred HHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 45688999998889999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCc
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++.. ||+++. +-.|+.....+.
T Consensus 185 ~~~~~~~d~v~~-l~~G~i~~~g~~ 208 (302)
T TIGR01188 185 EEADKLCDRIAI-IDHGRIIAEGTP 208 (302)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCH
Confidence 99988 999872 234444433333
No 15
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.95 E-value=3.8e-27 Score=190.05 Aligned_cols=104 Identities=27% Similarity=0.332 Sum_probs=91.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.+++|.+|||||||||+|||||+.+|+++++||||++||+.++..++++|++++++ |.|||++||+
T Consensus 121 v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 121 VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 357889999999999999999999999999999999999999999999999999999999999999875 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCch
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
++.+.. ||+++. +-.|+.....+..
T Consensus 201 ~~~v~~~~d~v~v-l~~G~iv~~g~~~ 226 (343)
T TIGR02314 201 MDVVKRICDCVAV-ISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHH
Confidence 999988 999973 3344444444433
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=5e-27 Score=185.60 Aligned_cols=106 Identities=37% Similarity=0.490 Sum_probs=93.3
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC-cEEEEEeC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIITTH 84 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tviivtH 84 (123)
+.+++++.+++.+.+++++..||+|||||+.||+||+++|+++||||||+||||..+..++++|++++++| +||+++||
T Consensus 116 ~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH 195 (293)
T COG1131 116 RIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195 (293)
T ss_pred HHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 35678999999887789999999999999999999999999999999999999999999999999999886 89999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
.++++.. ||+|+. +..|+........+
T Consensus 196 ~l~e~~~~~d~v~i-l~~G~~~~~g~~~~ 223 (293)
T COG1131 196 ILEEAEELCDRVII-LNDGKIIAEGTPEE 223 (293)
T ss_pred cHHHHHHhCCEEEE-EeCCEEEEeCCHHH
Confidence 9999999 998772 44555555554444
No 17
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=8.6e-27 Score=173.75 Aligned_cols=91 Identities=33% Similarity=0.448 Sum_probs=85.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++
T Consensus 107 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 186 (205)
T cd03226 107 AETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY 186 (205)
T ss_pred HHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46788999999899999999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 187 ~~~~~~~d~i~~ 198 (205)
T cd03226 187 EFLAKVCDRVLL 198 (205)
T ss_pred HHHHHhCCEEEE
Confidence 99987 998873
No 18
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=8e-27 Score=177.12 Aligned_cols=104 Identities=29% Similarity=0.410 Sum_probs=89.9
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.+++++++ |.|||++||++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 118 LEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 45788889988889999999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +-.|+........+
T Consensus 198 ~~~~~~~d~v~~-l~~G~i~~~g~~~~ 223 (235)
T cd03261 198 DTAFAIADRIAV-LYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHhcCEEEE-EECCeEEEecCHHH
Confidence 99988 999873 23455444444433
No 19
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.94 E-value=8.7e-27 Score=174.00 Aligned_cols=90 Identities=38% Similarity=0.498 Sum_probs=84.4
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||+++
T Consensus 116 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~ 195 (211)
T cd03225 116 EEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD 195 (211)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45788889888889999999999999999999999999999999999999999999999999998877999999999999
Q ss_pred HHHh-hcceee
Q psy6940 88 EARQ-ANTVFG 97 (123)
Q Consensus 88 ~~~~-~d~v~~ 97 (123)
++.. ||+++.
T Consensus 196 ~~~~~~d~i~~ 206 (211)
T cd03225 196 LLLELADRVIV 206 (211)
T ss_pred HHHHhCCEEEE
Confidence 9988 999873
No 20
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.94 E-value=1e-26 Score=174.01 Aligned_cols=90 Identities=31% Similarity=0.426 Sum_probs=84.3
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.++.++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|++++++|.|||++||+++
T Consensus 114 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~ 193 (213)
T cd03235 114 DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG 193 (213)
T ss_pred HHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45788889888889999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHHh-hcceee
Q psy6940 88 EARQ-ANTVFG 97 (123)
Q Consensus 88 ~~~~-~d~v~~ 97 (123)
++.. ||+++.
T Consensus 194 ~~~~~~d~i~~ 204 (213)
T cd03235 194 LVLEYFDRVLL 204 (213)
T ss_pred HHHHhcCEEEE
Confidence 9987 999873
No 21
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1e-26 Score=174.02 Aligned_cols=91 Identities=36% Similarity=0.408 Sum_probs=84.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||+
T Consensus 111 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 111 VRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred HHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 356788889988889999999999999999999999999999999999999999999999999998764 8999999999
Q ss_pred HHHHHh-hcceee
Q psy6940 86 IEEARQ-ANTVFG 97 (123)
Q Consensus 86 ~~~~~~-~d~v~~ 97 (123)
++++.. ||+++.
T Consensus 191 ~~~~~~~~d~v~~ 203 (213)
T cd03259 191 QEEALALADRIAV 203 (213)
T ss_pred HHHHHHhcCEEEE
Confidence 999988 999873
No 22
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.1e-26 Score=187.93 Aligned_cols=106 Identities=25% Similarity=0.228 Sum_probs=94.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|++++|||||++||+..++.+.+.|+++.++ |.|+|++|||
T Consensus 115 ~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 194 (356)
T PRK11650 115 VAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 (356)
T ss_pred HHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 457889999999999999999999999999999999999999999999999999999999999998776 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +..|+.....++.++
T Consensus 195 ~~ea~~l~D~i~v-l~~G~i~~~g~~~~~ 222 (356)
T PRK11650 195 QVEAMTLADRVVV-MNGGVAEQIGTPVEV 222 (356)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEECCHHHH
Confidence 999988 999873 346666666555554
No 23
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.94 E-value=1.5e-26 Score=172.99 Aligned_cols=90 Identities=32% Similarity=0.485 Sum_probs=84.3
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~ 198 (214)
T TIGR02673 119 GAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS 198 (214)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46788889888889999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHHh-hcceee
Q psy6940 88 EARQ-ANTVFG 97 (123)
Q Consensus 88 ~~~~-~d~v~~ 97 (123)
++.. ||+++.
T Consensus 199 ~~~~~~d~i~~ 209 (214)
T TIGR02673 199 LVDRVAHRVII 209 (214)
T ss_pred HHHHhcCEEEE
Confidence 9988 999873
No 24
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.94 E-value=1.8e-26 Score=174.84 Aligned_cols=105 Identities=26% Similarity=0.327 Sum_probs=91.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++....++++.+|||||||||+||||++.+|+++||||||+|||+.++..+++.|++++++|+|||++||++
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 124 AEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred HHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 35678888988888999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +..|+......+.+
T Consensus 204 ~~~~~~~d~i~~-l~~G~i~~~~~~~~ 229 (236)
T cd03219 204 DVVMSLADRVTV-LDQGRVIAEGTPDE 229 (236)
T ss_pred HHHHHhCCEEEE-EeCCEEEeecCHHH
Confidence 99988 999873 33455544444443
No 25
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.1e-26 Score=174.74 Aligned_cols=105 Identities=29% Similarity=0.456 Sum_probs=91.1
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++....++++.+|||||||||+||||++.+|+++||||||+|||+..+..+.+.|++++++ |.|||++||++
T Consensus 126 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 126 LAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred HHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45678888888889999999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++.. ||+++. +..|+......+.++
T Consensus 206 ~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 232 (241)
T cd03256 206 DLAREYADRIVG-LKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHhCCEEEE-EECCEEEeecCHHHh
Confidence 99987 999874 345655555444443
No 26
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.5e-26 Score=174.06 Aligned_cols=101 Identities=36% Similarity=0.526 Sum_probs=89.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||||||||++||+|++.+|+++||||||+|||+..++.+.+.|+++.++ |.|||++||+
T Consensus 112 ~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~ 191 (220)
T cd03265 112 IDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY 191 (220)
T ss_pred HHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356788899988889999999999999999999999999999999999999999999999999998876 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccC
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSL 108 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~ 108 (123)
++++.. ||+++. +..|+.....
T Consensus 192 ~~~~~~~~d~i~~-l~~G~i~~~~ 214 (220)
T cd03265 192 MEEAEQLCDRVAI-IDHGRIIAEG 214 (220)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEeC
Confidence 999988 998873 3455554433
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=1.7e-26 Score=185.81 Aligned_cols=105 Identities=32% Similarity=0.496 Sum_probs=92.0
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+++++++++.+..++++.+||+|||||++||+||+++|+++||||||+||||.++..++++|++++++|.|||++||+++
T Consensus 154 ~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 154 PSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred HHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHHh-hcceeeecccccccccCCchhh
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++.. ||+++. +..|+.....+..++
T Consensus 234 e~~~~~d~i~i-l~~G~i~~~g~~~~l 259 (340)
T PRK13536 234 EAERLCDRLCV-LEAGRKIAEGRPHAL 259 (340)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 9988 999983 334444444444443
No 28
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-26 Score=184.48 Aligned_cols=107 Identities=21% Similarity=0.354 Sum_probs=94.3
Q ss_pred HHHHHHHcCcc---hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE
Q psy6940 7 PAEILTRTRDF---ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~---~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv 82 (123)
+.++++++++. ...+++|++|||||||||+|||||+.+|+++|+||||++||+..+..++++|++++++ |.|+|+|
T Consensus 131 ~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~i 210 (326)
T PRK11022 131 AIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLI 210 (326)
T ss_pred HHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 35678888885 3568999999999999999999999999999999999999999999999999999864 9999999
Q ss_pred eCCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 83 THYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 83 tH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|||++.+.. ||+++. ++.|+.+......++.
T Consensus 211 THdl~~~~~~adri~v-m~~G~ive~g~~~~~~ 242 (326)
T PRK11022 211 THDLALVAEAAHKIIV-MYAGQVVETGKAHDIF 242 (326)
T ss_pred eCCHHHHHHhCCEEEE-EECCEEEEECCHHHHh
Confidence 999999987 999874 6788887777666554
No 29
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.9e-26 Score=184.56 Aligned_cols=107 Identities=20% Similarity=0.326 Sum_probs=94.7
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++++++. ...+++|++|||||||||+|||||+.+|++||+||||++||+..+..++++|++++++ |.|||+|||
T Consensus 134 ~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH 213 (327)
T PRK11308 134 ALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH 213 (327)
T ss_pred HHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 45778888886 4779999999999999999999999999999999999999999999999999999775 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+..+.. ||+++. ++.|+.+......++.
T Consensus 214 dl~~~~~~adrv~v-m~~G~ive~g~~~~~~ 243 (327)
T PRK11308 214 DLSVVEHIADEVMV-MYLGRCVEKGTKEQIF 243 (327)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEECCHHHHh
Confidence 9999988 999874 6777777766655554
No 30
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.94 E-value=1.9e-26 Score=182.00 Aligned_cols=105 Identities=31% Similarity=0.512 Sum_probs=90.9
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+++++.+++.+..++++.+||||||||++||+||+.+|+++||||||+|||+.++..+++.+++++++|.|||++||+++
T Consensus 117 ~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 117 PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred HHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 45788889988899999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHHh-hcceeeecccccccccCCchhh
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++.. ||+++. +..|+.....+..++
T Consensus 197 ~~~~~~d~i~~-l~~G~i~~~g~~~~~ 222 (303)
T TIGR01288 197 EAERLCDRLCV-LESGRKIAEGRPHAL 222 (303)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 9988 999873 334444444444433
No 31
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=184.66 Aligned_cols=107 Identities=26% Similarity=0.420 Sum_probs=93.3
Q ss_pred HHHHHHHcCcch---hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE
Q psy6940 7 PAEILTRTRDFA---LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~~---~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv 82 (123)
..++++++++.+ ..+++|.+|||||||||+|||||+.+|++||+||||++||+..+..+.++|+++.++ |.|||+|
T Consensus 136 ~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~i 215 (330)
T PRK15093 136 AIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLI 215 (330)
T ss_pred HHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788888864 468999999999999999999999999999999999999999999999999999875 9999999
Q ss_pred eCCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 83 THYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 83 tH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|||++.+.. ||+++. ++.|+.+...+..+++
T Consensus 216 tHdl~~v~~~~dri~v-m~~G~ive~g~~~~i~ 247 (330)
T PRK15093 216 SHDLQMLSQWADKINV-LYCGQTVETAPSKELV 247 (330)
T ss_pred ECCHHHHHHhCCEEEE-EECCEEEEECCHHHHH
Confidence 999999988 999873 6777776666555543
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.1e-27 Score=177.51 Aligned_cols=104 Identities=28% Similarity=0.418 Sum_probs=92.3
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+.+++.+++++.++.++++..+|.||||||+|||||+++|++++|||||+|||....+.+.+.+.+++++|++||++||.
T Consensus 113 ri~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~ 192 (245)
T COG4555 113 RIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192 (245)
T ss_pred HHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc
Confidence 35678889999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++++. ||+|+. +-.|+.+...+.
T Consensus 193 m~EvealCDrviv-lh~Gevv~~gs~ 217 (245)
T COG4555 193 MQEVEALCDRVIV-LHKGEVVLEGSI 217 (245)
T ss_pred HHHHHHhhheEEE-EecCcEEEcCCH
Confidence 999998 999984 223443333333
No 33
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.8e-26 Score=183.08 Aligned_cols=105 Identities=28% Similarity=0.363 Sum_probs=91.1
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+.++++.+++. ++.++++.+|||||||||+||+||+.+|+++||||||+|||+..+..+.+.|++++++|.|||++|||
T Consensus 145 ~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 145 AAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 45678889986 78999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +-.|+......+.+
T Consensus 225 ~~~~~~~adrv~v-l~~G~i~~~g~~~~ 251 (305)
T PRK13651 225 LDNVLEWTKRTIF-FKDGKIIKDGDTYD 251 (305)
T ss_pred HHHHHHhCCEEEE-EECCEEEEECCHHH
Confidence 999887 999983 24455444444443
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.94 E-value=1.4e-26 Score=187.87 Aligned_cols=106 Identities=25% Similarity=0.247 Sum_probs=94.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CcEEEEEeC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ--GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tviivtH 84 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|++++|||||+|||+..+..+.+.|+++.++ |.|+|++||
T Consensus 118 v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTH 197 (362)
T TIGR03258 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197 (362)
T ss_pred HHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 467889999999999999999999999999999999999999999999999999999999999998876 799999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|++++.. ||+++. +-.|+.....++.++
T Consensus 198 d~~ea~~l~dri~v-l~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 198 DQDDALTLADKAGI-MKDGRLAAHGEPQAL 226 (362)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 9999988 999873 345666655555544
No 35
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=9e-27 Score=186.26 Aligned_cols=107 Identities=25% Similarity=0.323 Sum_probs=98.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
+.++++.+|+.++.+++|++|||||||||.+||||+.+|++|++|||||+|||--+.++.+.+.++.++ ++||+|+|||
T Consensus 145 a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD 224 (386)
T COG4175 145 ALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD 224 (386)
T ss_pred HHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 457899999999999999999999999999999999999999999999999999999999999999876 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.+ .|||. .+-.|+....+++++.+
T Consensus 225 LdEAlriG~rIa-imkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 225 LDEALRIGDRIA-IMKDGEIVQVGTPEEIL 253 (386)
T ss_pred HHHHHhccceEE-EecCCeEEEeCCHHHHH
Confidence 999998 88876 36788888888888776
No 36
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.94 E-value=1.7e-26 Score=187.58 Aligned_cols=107 Identities=25% Similarity=0.363 Sum_probs=94.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++..+.+++|.+|||||||||+|||||+.+|+++||||||++|||..++.+.+.+.+++++ |+|||++|||
T Consensus 110 ~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd 189 (363)
T TIGR01186 110 ALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189 (363)
T ss_pred HHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356788899999999999999999999999999999999999999999999999999999999999765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++. +..|+.....++.++.
T Consensus 190 ~~ea~~~~drI~v-l~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 190 LDEAIRIGDRIVI-MKAGEIVQVGTPDEIL 218 (363)
T ss_pred HHHHHHhCCEEEE-EeCCEEEeeCCHHHHH
Confidence 999988 999873 4566666666655543
No 37
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.4e-27 Score=180.57 Aligned_cols=108 Identities=28% Similarity=0.416 Sum_probs=98.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
+-++++++|+.+.+..+..+|||||||||+|||||+.+|++++.|||+++|||.+.+.+++.|++++++ |.|||++-|+
T Consensus 128 Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~ 207 (258)
T COG3638 128 ALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207 (258)
T ss_pred HHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech
Confidence 346789999999999999999999999999999999999999999999999999999999999999865 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
++.+.+ |||+++ +-+|+.+..+.+.++..
T Consensus 208 vdlA~~Y~~Riig-l~~G~ivfDg~~~el~~ 237 (258)
T COG3638 208 VDLAKKYADRIIG-LKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHHHHHhhheE-ecCCcEEEeCChhhhhH
Confidence 999988 999985 67777777777776553
No 38
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.94 E-value=2.2e-26 Score=184.60 Aligned_cols=106 Identities=24% Similarity=0.359 Sum_probs=93.0
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.++++++++. ...+++|++|||||||||+|||||+.+|+++|+||||+|||+..+..+.++|+++.++ |.|||+||||
T Consensus 142 ~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 142 KAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4678888884 5789999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++.+.. ||+++. ++.|+.+......+++
T Consensus 222 l~~~~~~~dri~v-l~~G~ive~g~~~~i~ 250 (331)
T PRK15079 222 LAVVKHISDRVLV-MYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHH
Confidence 999988 999874 5677776665555443
No 39
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.5e-26 Score=180.31 Aligned_cols=105 Identities=29% Similarity=0.360 Sum_probs=90.3
Q ss_pred HHHHHHHcCcc--hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 7 PAEILTRTRDF--ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 7 ~~e~l~~~~l~--~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
..++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+++++++++++ |.|||++|
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 35678888986 6789999999999999999999999999999999999999999999999999999765 99999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +..|+.....+..+
T Consensus 203 Hd~~~~~~~~drv~~-l~~G~i~~~g~~~~ 231 (287)
T PRK13637 203 HSMEDVAKLADRIIV-MNKGKCELQGTPRE 231 (287)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEECCHHH
Confidence 99999977 999883 23444444444333
No 40
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.94 E-value=2.5e-26 Score=174.80 Aligned_cols=104 Identities=31% Similarity=0.447 Sum_probs=90.2
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++....++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|++++++ |+|||++||++
T Consensus 127 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 127 LSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 45688889888889999999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +-.|+.....++++
T Consensus 207 ~~~~~~~d~v~~-l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 207 DLAKKYADRIVG-LKAGEIVFDGAPSE 232 (243)
T ss_pred HHHHHhcCeEEE-EECCEEEecCCHHH
Confidence 99987 999873 33555554444444
No 41
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.1e-26 Score=178.63 Aligned_cols=90 Identities=36% Similarity=0.508 Sum_probs=84.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||++
T Consensus 119 ~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~ 198 (274)
T PRK13647 119 VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV 198 (274)
T ss_pred HHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678888998899999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 199 ~~~~~~~d~i~ 209 (274)
T PRK13647 199 DLAAEWADQVI 209 (274)
T ss_pred HHHHHhCCEEE
Confidence 99977 99987
No 42
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.4e-26 Score=179.42 Aligned_cols=90 Identities=30% Similarity=0.457 Sum_probs=84.5
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+++. .+.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 125 ALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred HHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45678888986 68899999999999999999999999999999999999999999999999999987779999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 205 ~~~~~~~~d~v~ 216 (287)
T PRK13641 205 MDDVAEYADDVL 216 (287)
T ss_pred HHHHHHhCCEEE
Confidence 999988 99988
No 43
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.4e-26 Score=174.23 Aligned_cols=104 Identities=30% Similarity=0.356 Sum_probs=89.9
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.++.++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.++|.+++++ |+|||++||++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 118 HELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred HHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46688889888889999999999999999999999999999999999999999999999999999765 89999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +-.|+.......++
T Consensus 198 ~~~~~~~d~i~~-l~~G~i~~~~~~~~ 223 (239)
T cd03296 198 EEALEVADRVVV-MNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHhCCEEEE-EECCeEEEecCHHH
Confidence 99887 999873 23455444444433
No 44
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.2e-26 Score=179.23 Aligned_cols=104 Identities=30% Similarity=0.404 Sum_probs=89.7
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
.+++++.+++. .+.++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+++++++++ |.|||++||
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitH 204 (290)
T PRK13634 125 AREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH 204 (290)
T ss_pred HHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35678889986 6789999999999999999999999999999999999999999999999999999765 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCch
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++++.. ||+++. +..|+......+.
T Consensus 205 d~~~~~~~~drv~~-l~~G~i~~~g~~~ 231 (290)
T PRK13634 205 SMEDAARYADQIVV-MHKGTVFLQGTPR 231 (290)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEECCHH
Confidence 9999987 999884 3445544444333
No 45
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.94 E-value=3.4e-26 Score=170.89 Aligned_cols=91 Identities=29% Similarity=0.417 Sum_probs=84.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.+..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|+++.++|.|||++||++
T Consensus 117 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 117 VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35678888988888999999999999999999999999999999999999999999999999999876799999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 197 ~~~~~~~d~i~~ 208 (214)
T cd03292 197 ELVDTTRHRVIA 208 (214)
T ss_pred HHHHHhCCEEEE
Confidence 99987 998873
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.4e-26 Score=172.17 Aligned_cols=99 Identities=27% Similarity=0.368 Sum_probs=87.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++++++.++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|+++.+ .|.|||++||+
T Consensus 112 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 112 AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred HHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 34678888998888999999999999999999999999999999999999999999999999999865 48999999999
Q ss_pred HHHHHh-hcceeeecc--cccccc
Q psy6940 86 IEEARQ-ANTVFGGFF--APKLHL 106 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~--~~~~~~ 106 (123)
++++.. ||+++. +. .|+...
T Consensus 192 ~~~~~~~~d~i~~-l~~~~G~i~~ 214 (220)
T cd03293 192 IDEAVFLADRVVV-LSARPGRIVA 214 (220)
T ss_pred HHHHHHhCCEEEE-EECCCCEEEE
Confidence 999887 998874 23 355443
No 47
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=194.37 Aligned_cols=107 Identities=26% Similarity=0.357 Sum_probs=96.7
Q ss_pred HHHHHHHcCcchhc--CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 7 PAEILTRTRDFALR--KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 7 ~~e~l~~~~l~~~~--~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
+.++++++++.+-. +++|++|||||||||.||+||+++|++||+||||++||+..+.+|.++|+++.++ |.++|+||
T Consensus 133 a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~IT 212 (539)
T COG1123 133 AVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFIT 212 (539)
T ss_pred HHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 45678888876544 4599999999999999999999999999999999999999999999999999865 99999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
||+..+.+ ||+++. ++.|+.+........+
T Consensus 213 HDl~Vva~~aDrv~V-m~~G~iVE~G~~~~i~ 243 (539)
T COG1123 213 HDLGVVAELADRVVV-MYKGEIVETGPTEEIL 243 (539)
T ss_pred CCHHHHHHhcCeEEE-EECCEEEEecCHHHHH
Confidence 99999999 999985 8899998888888776
No 48
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.5e-26 Score=178.93 Aligned_cols=105 Identities=30% Similarity=0.408 Sum_probs=89.6
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+++. .+.++++.+||||||||++|||+|+.+|+++||||||+|||+.++..+.+.+.+++++|.|||++||+
T Consensus 124 ~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd 203 (288)
T PRK13643 124 AAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203 (288)
T ss_pred HHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 35677888985 57899999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +..|+......+.+
T Consensus 204 ~~~~~~~~dri~~-l~~G~i~~~g~~~~ 230 (288)
T PRK13643 204 MDDVADYADYVYL-LEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHhCCEEEE-EECCEEEEECCHHH
Confidence 999987 999983 33444444444433
No 49
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.94 E-value=3.3e-26 Score=171.63 Aligned_cols=91 Identities=32% Similarity=0.418 Sum_probs=83.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.++++++ .|+|||++||+
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 35678889998888999999999999999999999999999999999999999999999999999976 58999999999
Q ss_pred HHHHHhhcceee
Q psy6940 86 IEEARQANTVFG 97 (123)
Q Consensus 86 ~~~~~~~d~v~~ 97 (123)
++++..||+++.
T Consensus 201 ~~~~~~~d~v~~ 212 (218)
T cd03255 201 PELAEYADRIIE 212 (218)
T ss_pred HHHHhhhcEEEE
Confidence 998866998873
No 50
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.94 E-value=3.5e-26 Score=184.85 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=93.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.+++|.+|||||||||+|||||+.+|++++|||||+|||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 117 ~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd 196 (353)
T PRK10851 117 VTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD 196 (353)
T ss_pred HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356788899999999999999999999999999999999999999999999999999999999999876 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +..|+.....++.++
T Consensus 197 ~~ea~~~~Dri~v-l~~G~i~~~g~~~~i 224 (353)
T PRK10851 197 QEEAMEVADRVVV-MSQGNIEQAGTPDQV 224 (353)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999988 999873 345665555555544
No 51
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=3.2e-26 Score=185.04 Aligned_cols=107 Identities=27% Similarity=0.290 Sum_probs=94.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|++++|||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 117 v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 196 (351)
T PRK11432 117 VKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 (351)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 356888899999999999999999999999999999999999999999999999999999999999765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
.+++.. ||+++. +..|+.....++.++.
T Consensus 197 ~~e~~~laD~i~v-m~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 197 QSEAFAVSDTVIV-MNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHH
Confidence 999988 999884 4466666666666543
No 52
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=182.83 Aligned_cols=108 Identities=30% Similarity=0.388 Sum_probs=98.0
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+..|+++.+.+.++.+++|.+|||||||||++||||+.+|++|+||||+++||...++.+...++++.++ |.|+++|||
T Consensus 117 rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred HHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 4568899999999999999999999999999999999999999999999999999999999999999877 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|.+++.. ||||+. +-+|+++....+.+..
T Consensus 197 D~eea~~ladrvvv-l~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 197 DQEEALELADRVVV-LNQGRIEQVGPPDEVY 226 (345)
T ss_pred CHHHHHhhcceEEE-ecCCeeeeeCCHHHHh
Confidence 9999998 999984 5677776666666553
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.8e-26 Score=172.02 Aligned_cols=105 Identities=27% Similarity=0.314 Sum_probs=91.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++++++.+..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+++++++ |+|||++||+
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 121 VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 356788899988899999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +-.|+........+
T Consensus 201 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 227 (233)
T cd03258 201 MEVVKRICDRVAV-MEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHhCCEEEE-EECCEEEEecCHHH
Confidence 999987 999874 34566555444433
No 54
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=5.2e-26 Score=177.71 Aligned_cols=105 Identities=26% Similarity=0.290 Sum_probs=90.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+++++++ |.|||++||+
T Consensus 121 ~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 121 VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 456788999999999999999999999999999999999999999999999999999999999999865 9999999999
Q ss_pred HHHHHhhcceeeecccccccccCCchh
Q psy6940 86 IEEARQANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++..||+++. +..|+.....++.+
T Consensus 201 ~~~~~~~dri~~-l~~G~i~~~g~~~~ 226 (279)
T PRK13650 201 LDEVALSDRVLV-MKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHH
Confidence 999855998873 33455444444433
No 55
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.94 E-value=6.3e-26 Score=173.40 Aligned_cols=102 Identities=28% Similarity=0.384 Sum_probs=88.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++....++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.++++.++|.|||++||++
T Consensus 125 ~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 125 ARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34567888888888999999999999999999999999999999999999999999999999999887799999999999
Q ss_pred HHHHh-hcceeeecccccccccCC
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+++.. ||+++. +-.|+......
T Consensus 205 ~~~~~~~d~i~~-l~~G~i~~~~~ 227 (250)
T PRK11264 205 SFARDVADRAIF-MDQGRIVEQGP 227 (250)
T ss_pred HHHHHhcCEEEE-EECCEEEEeCC
Confidence 99987 999873 23444433333
No 56
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=3.6e-26 Score=184.79 Aligned_cols=106 Identities=30% Similarity=0.357 Sum_probs=94.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|++++|||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 115 ~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd 194 (353)
T TIGR03265 115 VAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194 (353)
T ss_pred HHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 567899999999999999999999999999999999999999999999999999999999999998765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +..|+.....++.++
T Consensus 195 ~~ea~~l~d~i~v-l~~G~i~~~g~~~~~ 222 (353)
T TIGR03265 195 QEEALSMADRIVV-MNHGVIEQVGTPQEI 222 (353)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999988 998873 445665555555544
No 57
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.94 E-value=5.9e-26 Score=171.64 Aligned_cols=103 Identities=27% Similarity=0.418 Sum_probs=89.4
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||+++
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 115 EELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 56788889888889999999999999999999999999999999999999999999999999998877999999999999
Q ss_pred HHHh-hcceeeecccccccccCCch
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
++.. ||+++. +-.|+.......+
T Consensus 195 ~~~~~~d~i~~-l~~G~i~~~~~~~ 218 (232)
T cd03218 195 ETLSITDRAYI-IYEGKVLAEGTPE 218 (232)
T ss_pred HHHHhCCEEEE-EECCeEEEEeCHH
Confidence 9988 998873 2344444333333
No 58
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.94 E-value=4.7e-26 Score=171.09 Aligned_cols=90 Identities=31% Similarity=0.437 Sum_probs=83.2
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.+..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||++
T Consensus 123 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 123 YEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46788889888889999999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred HHHHhhcceee
Q psy6940 87 EEARQANTVFG 97 (123)
Q Consensus 87 ~~~~~~d~v~~ 97 (123)
+++..||+++.
T Consensus 203 ~~~~~~d~v~~ 213 (221)
T TIGR02211 203 ELAKKLDRVLE 213 (221)
T ss_pred HHHhhcCEEEE
Confidence 98866988873
No 59
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=3.8e-26 Score=171.93 Aligned_cols=104 Identities=28% Similarity=0.418 Sum_probs=92.0
Q ss_pred HHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 10 ILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 10 ~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
.+.++|+.+.++.||..||||||||++|||||+.+|+++++||||++|||+...++.+.+++++++|+|.+++||.|.++
T Consensus 136 ~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA 215 (256)
T COG4598 136 YLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA 215 (256)
T ss_pred HHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hcceeeecccccccccCCchhhh
Q psy6940 90 RQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 90 ~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
.. +.+++- +.+|..+....+...+
T Consensus 216 R~Vss~v~f-Lh~G~iEE~G~P~qvf 240 (256)
T COG4598 216 RDVSSHVIF-LHQGKIEEEGPPEQVF 240 (256)
T ss_pred HhhhhheEE-eecceecccCChHHHh
Confidence 98 777662 4466666666666554
No 60
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.8e-26 Score=176.13 Aligned_cols=105 Identities=27% Similarity=0.327 Sum_probs=90.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|.++.++ |.|||++||+
T Consensus 141 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 141 AAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred HHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 346788899988899999999999999999999999999999999999999999999999999998754 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +-.|+........+
T Consensus 221 ~~~~~~~~d~v~~-l~~G~i~~~g~~~~ 247 (269)
T cd03294 221 LDEALRLGDRIAI-MKDGRLVQVGTPEE 247 (269)
T ss_pred HHHHHHhcCEEEE-EECCEEEEeCCHHH
Confidence 999887 999873 23455444443333
No 61
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.93 E-value=3.1e-26 Score=170.86 Aligned_cols=91 Identities=32% Similarity=0.369 Sum_probs=85.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.+..++++.+|||||||||+||||++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++
T Consensus 107 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 186 (208)
T cd03268 107 IDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186 (208)
T ss_pred HHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45678899998889999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 187 ~~~~~~~d~v~~ 198 (208)
T cd03268 187 SEIQKVADRIGI 198 (208)
T ss_pred HHHHHhcCEEEE
Confidence 99987 998873
No 62
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.93 E-value=3.5e-26 Score=171.48 Aligned_cols=97 Identities=26% Similarity=0.423 Sum_probs=87.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++
T Consensus 117 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 117 LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred HHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678899998889999999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHh-hcceeeecccccc
Q psy6940 87 EEARQ-ANTVFGGFFAPKL 104 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~ 104 (123)
+++.. ||+++. +..|+.
T Consensus 197 ~~~~~~~d~i~~-l~~G~i 214 (218)
T cd03266 197 QEVERLCDRVVV-LHRGRV 214 (218)
T ss_pred HHHHHhcCEEEE-EECCEE
Confidence 99987 999873 334443
No 63
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=7.4e-26 Score=175.73 Aligned_cols=101 Identities=28% Similarity=0.372 Sum_probs=88.5
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.++|.+++++|.|||++||+++
T Consensus 118 ~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~ 197 (271)
T PRK13638 118 DEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197 (271)
T ss_pred HHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 45788889888899999999999999999999999999999999999999999999999999998877899999999999
Q ss_pred HHHh-hcceeeecccccccccCC
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
++.. ||+++. +..|+......
T Consensus 198 ~~~~~~d~i~~-l~~G~i~~~g~ 219 (271)
T PRK13638 198 LIYEISDAVYV-LRQGQILTHGA 219 (271)
T ss_pred HHHHhCCEEEE-EECCEEEEeCC
Confidence 9987 999873 33444443333
No 64
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.93 E-value=5.1e-26 Score=170.04 Aligned_cols=90 Identities=30% Similarity=0.360 Sum_probs=83.9
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++++++.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 112 ~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 46788889988899999999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 192 ~~~~~~~d~i~~ 203 (213)
T cd03301 192 VEAMTMADRIAV 203 (213)
T ss_pred HHHHHhcCeEEE
Confidence 99988 998873
No 65
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.93 E-value=8e-26 Score=171.21 Aligned_cols=104 Identities=27% Similarity=0.338 Sum_probs=92.5
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.++.++++.+||+|||||++||||++.+|+++|+||||+|||+.+++.+.+.+.+++++|.|||++||+++
T Consensus 95 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~ 174 (223)
T TIGR03771 95 RDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 (223)
T ss_pred HHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45678888888889999999999999999999999999999999999999999999999999998877999999999999
Q ss_pred HHHh-hcceeeecccccccccCCchhh
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++.. ||+++. + .|+........++
T Consensus 175 ~~~~~~d~i~~-l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 175 QAMATCDRVVL-L-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHhCCEEEE-E-CCEEEeecCHHHh
Confidence 9987 999884 3 6777665555544
No 66
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.93 E-value=6.3e-26 Score=169.34 Aligned_cols=90 Identities=33% Similarity=0.474 Sum_probs=84.3
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++++++.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||+++
T Consensus 117 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~ 196 (213)
T cd03262 117 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG 196 (213)
T ss_pred HHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 56778888888889999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred HHHh-hcceee
Q psy6940 88 EARQ-ANTVFG 97 (123)
Q Consensus 88 ~~~~-~d~v~~ 97 (123)
++.. ||+++.
T Consensus 197 ~~~~~~d~i~~ 207 (213)
T cd03262 197 FAREVADRVIF 207 (213)
T ss_pred HHHHhCCEEEE
Confidence 9987 999873
No 67
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.7e-26 Score=184.87 Aligned_cols=106 Identities=31% Similarity=0.337 Sum_probs=92.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|+++.++ |.|+|++||+
T Consensus 114 ~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd 193 (369)
T PRK11000 114 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (369)
T ss_pred HHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 456788899999999999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 194 ~~~~~~~~d~i~v-l~~G~i~~~g~~~~i 221 (369)
T PRK11000 194 QVEAMTLADKIVV-LDAGRVAQVGKPLEL 221 (369)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999988 999873 335555555544443
No 68
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.93 E-value=5.5e-26 Score=172.79 Aligned_cols=90 Identities=26% Similarity=0.313 Sum_probs=84.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++++++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++ |.|||++||+
T Consensus 95 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 95 VEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred HHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356788889988889999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 175 ~~~~~~~~d~v~ 186 (230)
T TIGR01184 175 VDEALLLSDRVV 186 (230)
T ss_pred HHHHHHhcCEEE
Confidence 999988 99987
No 69
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=7.4e-26 Score=185.97 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=92.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++.++.++++.+||||||||++|||||+++|+++||||||+|||+..+..++++|++++++|.|||++||++
T Consensus 120 v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl 199 (402)
T PRK09536 120 VERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL 199 (402)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 45788999999999999999999999999999999999999999999999999999999999999987789999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.+ ||+++. +-.|+.....++.+
T Consensus 200 ~~~~~~adrii~-l~~G~iv~~G~~~e 225 (402)
T PRK09536 200 DLAARYCDELVL-LADGRVRAAGPPAD 225 (402)
T ss_pred HHHHHhCCEEEE-EECCEEEEecCHHH
Confidence 99988 999983 33555555555444
No 70
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.93 E-value=7e-26 Score=181.48 Aligned_cols=106 Identities=28% Similarity=0.387 Sum_probs=93.3
Q ss_pred HHHHHHcCcch---hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 8 AEILTRTRDFA---LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~---~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
.++++.+++.+ ..+++|++|||||+|||+|||||+.+|+++|+||||++||+..+..+.+.|++++++ |.|+|+||
T Consensus 140 ~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iT 219 (330)
T PRK09473 140 VRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMIT 219 (330)
T ss_pred HHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 45677777753 357899999999999999999999999999999999999999999999999999775 99999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
||+..+.. ||+++. ++.|+.+......++.
T Consensus 220 Hdl~~~~~~~Dri~v-m~~G~ive~g~~~~i~ 250 (330)
T PRK09473 220 HDLGVVAGICDKVLV-MYAGRTMEYGNARDVF 250 (330)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEECCHHHHH
Confidence 99999987 999874 6788888777766664
No 71
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=1e-25 Score=171.53 Aligned_cols=99 Identities=31% Similarity=0.418 Sum_probs=88.1
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 118 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 197 (240)
T PRK09493 118 RELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG 197 (240)
T ss_pred HHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 56788889988889999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHHh-hcceeeeccccccccc
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLS 107 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~ 107 (123)
++.. ||+++. +-.|+....
T Consensus 198 ~~~~~~d~i~~-l~~G~i~~~ 217 (240)
T PRK09493 198 FAEKVASRLIF-IDKGRIAED 217 (240)
T ss_pred HHHHhCCEEEE-EECCEEEee
Confidence 9987 999873 234444433
No 72
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=6.7e-26 Score=182.21 Aligned_cols=90 Identities=29% Similarity=0.420 Sum_probs=84.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+++.|++++++ |+|||++||+
T Consensus 121 ~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 121 VTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 346788899988899999999999999999999999999999999999999999999999999999765 8999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 201 ~~~i~~~~d~v~ 212 (343)
T PRK11153 201 MDVVKRICDRVA 212 (343)
T ss_pred HHHHHHhCCEEE
Confidence 999988 99987
No 73
>PRK10908 cell division protein FtsE; Provisional
Probab=99.93 E-value=8.9e-26 Score=170.09 Aligned_cols=89 Identities=26% Similarity=0.424 Sum_probs=83.8
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++++++.+..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.+.+++++|.|||++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (222)
T PRK10908 119 SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG 198 (222)
T ss_pred HHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46788889888889999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHHh-hccee
Q psy6940 88 EARQ-ANTVF 96 (123)
Q Consensus 88 ~~~~-~d~v~ 96 (123)
++.. ||+++
T Consensus 199 ~~~~~~d~i~ 208 (222)
T PRK10908 199 LISRRSYRML 208 (222)
T ss_pred HHHHhCCEEE
Confidence 9988 99887
No 74
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=7.8e-26 Score=169.57 Aligned_cols=91 Identities=30% Similarity=0.370 Sum_probs=84.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++++++....++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+++++++ |.|||++||+
T Consensus 112 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 112 VDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred HHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 356788899888889999999999999999999999999999999999999999999999999999765 8999999999
Q ss_pred HHHHHh-hcceee
Q psy6940 86 IEEARQ-ANTVFG 97 (123)
Q Consensus 86 ~~~~~~-~d~v~~ 97 (123)
++++.. ||+++.
T Consensus 192 ~~~~~~~~d~i~~ 204 (214)
T cd03297 192 LSEAEYLADRIVV 204 (214)
T ss_pred HHHHHHhcCEEEE
Confidence 999987 999873
No 75
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.93 E-value=7.6e-26 Score=180.65 Aligned_cols=106 Identities=28% Similarity=0.328 Sum_probs=91.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|+++.++ |.|||++||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356788899988999999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 161 ~~e~~~~~d~i~v-l~~G~i~~~g~~~~~ 188 (325)
T TIGR01187 161 QEEAMTMSDRIAI-MRKGKIAQIGTPEEI 188 (325)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999988 999873 334555444444443
No 76
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.93 E-value=1e-25 Score=174.95 Aligned_cols=100 Identities=24% Similarity=0.380 Sum_probs=87.6
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.+..++++.+|||||||||+||||++.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 125 ~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 125 MMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 35688899988899999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred HHHHh-hcceeeecccccccccC
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSL 108 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~ 108 (123)
+++.. ||+++. +-.|+.....
T Consensus 205 ~~~~~~~d~v~~-l~~G~i~~~g 226 (269)
T PRK11831 205 PEVLSIADHAYI-VADKKIVAHG 226 (269)
T ss_pred HHHHHhhCEEEE-EECCEEEEeC
Confidence 99988 999873 2344443333
No 77
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=9.4e-26 Score=168.62 Aligned_cols=91 Identities=31% Similarity=0.425 Sum_probs=84.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+|||+..+..+.+.|++++++ |.|||++||+
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 109 IEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred HHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356788889988889999999999999999999999999999999999999999999999999998754 8999999999
Q ss_pred HHHHHh-hcceee
Q psy6940 86 IEEARQ-ANTVFG 97 (123)
Q Consensus 86 ~~~~~~-~d~v~~ 97 (123)
++++.. ||+++.
T Consensus 189 ~~~~~~~~d~i~~ 201 (211)
T cd03298 189 PEDAKRLAQRVVF 201 (211)
T ss_pred HHHHHhhhCEEEE
Confidence 999988 999873
No 78
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=179.75 Aligned_cols=104 Identities=27% Similarity=0.302 Sum_probs=89.2
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+.++++.+++. .+.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|.+++.+|.|||++||+
T Consensus 156 ~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd 235 (320)
T PRK13631 156 AKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235 (320)
T ss_pred HHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 45678888886 68899999999999999999999999999999999999999999999999999987779999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCch
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
++++.. ||+++. +-.|+........
T Consensus 236 ~~~~~~~adri~v-l~~G~i~~~g~~~ 261 (320)
T PRK13631 236 MEHVLEVADEVIV-MDKGKILKTGTPY 261 (320)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHH
Confidence 999877 999873 3344444443333
No 79
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=172.33 Aligned_cols=104 Identities=20% Similarity=0.270 Sum_probs=89.7
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.++.++++.+||||||||++||+|++.+|+++||||||+|||+.++..+.+.|.+++++ |.|||++||++
T Consensus 135 ~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 135 ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred HHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 45577888888899999999999999999999999999999999999999999999999999998775 89999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +-.|+......+.+
T Consensus 215 ~~~~~~~d~i~~-l~~g~i~~~~~~~~ 240 (255)
T PRK11300 215 KLVMGISDRIYV-VNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHhCCEEEE-EECCeEEecCCHHH
Confidence 99987 998873 33455544444433
No 80
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.93 E-value=1.1e-25 Score=169.86 Aligned_cols=98 Identities=29% Similarity=0.367 Sum_probs=85.0
Q ss_pred HHHHHHcCcchhcCCC--CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 8 AEILTRTRDFALRKLL--PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~--~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.++++.+++.+..+++ +.+||||||||++||||++.+|+++||||||+|||+..+..+.+.|++++++ .|||++||+
T Consensus 121 ~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~ 199 (227)
T cd03260 121 EEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHN 199 (227)
T ss_pred HHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEecc
Confidence 4678888887776666 5999999999999999999999999999999999999999999999999877 999999999
Q ss_pred HHHHHh-hcceeeeccccccccc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLS 107 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~ 107 (123)
++++.. ||+++. +..|+....
T Consensus 200 ~~~~~~~~d~i~~-l~~G~i~~~ 221 (227)
T cd03260 200 MQQAARVADRTAF-LLNGRLVEF 221 (227)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEe
Confidence 999987 998873 334554433
No 81
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=175.82 Aligned_cols=103 Identities=27% Similarity=0.410 Sum_probs=88.3
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+++++++++ |.|||++||
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH 204 (286)
T PRK13646 125 AHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSH 204 (286)
T ss_pred HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 34678888986 6788999999999999999999999999999999999999999999999999999764 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCc
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++++.. ||+++. +..|+......+
T Consensus 205 ~~~~~~~~~dri~~-l~~G~i~~~g~~ 230 (286)
T PRK13646 205 DMNEVARYADEVIV-MKEGSIVSQTSP 230 (286)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEECCH
Confidence 9999987 999873 234444433333
No 82
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.93 E-value=1.1e-25 Score=181.61 Aligned_cols=105 Identities=28% Similarity=0.362 Sum_probs=91.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|++++++ |.|||++||+
T Consensus 112 ~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 112 FERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 467889999999999999999999999999999999999999999999999999999999999998766 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +-.|+......+.+
T Consensus 192 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 192 LQEVLRLADRVVV-LEDGRVAAAGPIAE 218 (354)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEECCHHH
Confidence 999987 999873 33444444444333
No 83
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=174.56 Aligned_cols=90 Identities=30% Similarity=0.355 Sum_probs=84.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++..||+|||||++|||||+.+|+++||||||+|||+.++..+++.+++++++|.|||++||++
T Consensus 117 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~ 196 (274)
T PRK13644 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNL 196 (274)
T ss_pred HHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 34668888998899999999999999999999999999999999999999999999999999999887799999999999
Q ss_pred HHHHhhccee
Q psy6940 87 EEARQANTVF 96 (123)
Q Consensus 87 ~~~~~~d~v~ 96 (123)
+++..||+++
T Consensus 197 ~~~~~~d~v~ 206 (274)
T PRK13644 197 EELHDADRII 206 (274)
T ss_pred HHHhhCCEEE
Confidence 9985599987
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=175.41 Aligned_cols=105 Identities=33% Similarity=0.415 Sum_probs=90.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+++++++ |.|||++||+
T Consensus 122 ~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~ 201 (283)
T PRK13636 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201 (283)
T ss_pred HHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 356788899999999999999999999999999999999999999999999999999999999999765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +-.|+........+
T Consensus 202 ~~~~~~~~dri~~-l~~G~i~~~g~~~~ 228 (283)
T PRK13636 202 IDIVPLYCDNVFV-MKEGRVILQGNPKE 228 (283)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 999987 999873 23444444444443
No 85
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.4e-25 Score=170.13 Aligned_cols=90 Identities=28% Similarity=0.418 Sum_probs=84.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+++.++.++ |.|||++||+
T Consensus 110 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 110 LHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred HHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 456788899988999999999999999999999999999999999999999999999999999998754 8999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 190 ~~~~~~~~d~i~ 201 (232)
T PRK10771 190 LEDAARIAPRSL 201 (232)
T ss_pred HHHHHHhCCEEE
Confidence 999987 99887
No 86
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=174.37 Aligned_cols=105 Identities=34% Similarity=0.443 Sum_probs=90.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++.+|||||+||++||||++.+|+++||||||+|||+.++..+.+.+++++++|.|||++||++
T Consensus 118 ~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~ 197 (275)
T PRK13639 118 VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV 197 (275)
T ss_pred HHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 45678889999999999999999999999999999999999999999999999999999999999976799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +..|+.....++.+
T Consensus 198 ~~~~~~~d~i~~-l~~G~i~~~g~~~~ 223 (275)
T PRK13639 198 DLVPVYADKVYV-MSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 99987 999873 23444443333333
No 87
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.93 E-value=5.8e-26 Score=191.39 Aligned_cols=107 Identities=28% Similarity=0.348 Sum_probs=96.2
Q ss_pred HHHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++++++.. +.+++|++||||||||++|||||+.+|+++|+||||+.||+..+..+.++|.++.++ |.|.+||||
T Consensus 409 v~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISH 488 (539)
T COG1123 409 VAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488 (539)
T ss_pred HHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 456788888875 799999999999999999999999999999999999999999999999999999877 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+..+.+ ||||+. ++.|+.+.....+..+
T Consensus 489 Dl~vV~~i~drv~v-m~~G~iVE~G~~~~v~ 518 (539)
T COG1123 489 DLAVVRYIADRVAV-MYDGRIVEEGPTEKVF 518 (539)
T ss_pred CHHHHHhhCceEEE-EECCeEEEeCCHHHHh
Confidence 9999999 999985 7777777776554443
No 88
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=1e-25 Score=183.64 Aligned_cols=106 Identities=26% Similarity=0.322 Sum_probs=92.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|++++|||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 125 ~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 125 VMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356788889999999999999999999999999999999999999999999999999999999998875 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
.+++.. ||+++. +..|+.....++.++
T Consensus 205 ~~ea~~laDri~v-l~~G~i~~~g~~~~i 232 (375)
T PRK09452 205 QEEALTMSDRIVV-MRDGRIEQDGTPREI 232 (375)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999988 999883 345555555554443
No 89
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-25 Score=170.73 Aligned_cols=98 Identities=29% Similarity=0.414 Sum_probs=86.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|+++++ +|.|||++||+
T Consensus 126 ~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 126 ALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35678889998888999999999999999999999999999999999999999999999999999875 58999999999
Q ss_pred HHHHHhhcceeeeccccccc
Q psy6940 86 IEEARQANTVFGGFFAPKLH 105 (123)
Q Consensus 86 ~~~~~~~d~v~~~~~~~~~~ 105 (123)
++++..+|+++ .+..|+..
T Consensus 206 ~~~~~~~~~~~-~l~~G~i~ 224 (233)
T PRK11629 206 LQLAKRMSRQL-EMRDGRLT 224 (233)
T ss_pred HHHHHhhCEEE-EEECCEEE
Confidence 99988877765 34455544
No 90
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.93 E-value=1.6e-25 Score=169.96 Aligned_cols=106 Identities=28% Similarity=0.308 Sum_probs=89.6
Q ss_pred HHHHHHHcCcc---hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE
Q psy6940 7 PAEILTRTRDF---ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~---~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv 82 (123)
..++++++++. .+.++++.+|||||||||+||||++.+|+++||||||+|||+..++.+.+.+.+++++ |.|||++
T Consensus 103 ~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 182 (230)
T TIGR02770 103 ILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI 182 (230)
T ss_pred HHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 35678888886 5779999999999999999999999999999999999999999999999999998764 8999999
Q ss_pred eCCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 83 THYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 83 tH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
||+++++.. ||+++. +-.|+......+.++
T Consensus 183 sH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 213 (230)
T TIGR02770 183 THDLGVVARIADEVAV-MDDGRIVERGTVKEI 213 (230)
T ss_pred eCCHHHHHHhCCEEEE-EECCEEEEeCCHHHH
Confidence 999999987 998873 334554444444333
No 91
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=168.00 Aligned_cols=91 Identities=30% Similarity=0.436 Sum_probs=84.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++.+||||||||++||+|++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 35678888888888999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 189 ~~~~~~~d~i~~ 200 (210)
T cd03269 189 ELVEELCDRVLL 200 (210)
T ss_pred HHHHHhhhEEEE
Confidence 99987 998873
No 92
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.4e-25 Score=180.83 Aligned_cols=106 Identities=26% Similarity=0.333 Sum_probs=92.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|+++.++ |.|||++||+
T Consensus 109 ~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 109 FDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred HHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457889999999999999999999999999999999999999999999999999999999999998766 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 189 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~i 216 (352)
T PRK11144 189 LDEILRLADRVVV-LEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEecCHHHH
Confidence 999988 999873 334555544444443
No 93
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=171.70 Aligned_cols=89 Identities=27% Similarity=0.364 Sum_probs=83.8
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.++.++++.+|||||+||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||+++
T Consensus 120 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~ 199 (255)
T PRK11231 120 NQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN 199 (255)
T ss_pred HHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46678888888899999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHHh-hccee
Q psy6940 88 EARQ-ANTVF 96 (123)
Q Consensus 88 ~~~~-~d~v~ 96 (123)
++.. ||+++
T Consensus 200 ~~~~~~d~i~ 209 (255)
T PRK11231 200 QASRYCDHLV 209 (255)
T ss_pred HHHHhcCEEE
Confidence 9987 99987
No 94
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=174.07 Aligned_cols=105 Identities=29% Similarity=0.417 Sum_probs=90.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++..||||||||++|||||+.+|+++||||||+|||+.++..+.+.+++++++ |.|||++||+
T Consensus 118 ~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred HHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 456788889988899999999999999999999999999999999999999999999999999999875 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +..|+.....++++
T Consensus 198 ~~~~~~~~drv~~-l~~G~i~~~g~~~~ 224 (277)
T PRK13652 198 LDLVPEMADYIYV-MDKGRIVAYGTVEE 224 (277)
T ss_pred HHHHHHhCCEEEE-EECCeEEEECCHHH
Confidence 999987 999873 33444444433333
No 95
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=187.61 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=94.3
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++++++. +..++++.+|||||||||+||||++.+|++|||||||+|||+..++.+++.|.+++++|.|||++|||
T Consensus 376 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 455 (501)
T PRK11288 376 ADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD 455 (501)
T ss_pred HHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 34678888884 67899999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
++++.. ||+++. +..|+.....+.++...
T Consensus 456 ~~~~~~~~d~i~~-l~~g~i~~~~~~~~~~~ 485 (501)
T PRK11288 456 LPEVLGVADRIVV-MREGRIAGELAREQATE 485 (501)
T ss_pred HHHHHhhCCEEEE-EECCEEEEEEccccCCH
Confidence 999988 999883 44666666666655543
No 96
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=1.3e-25 Score=169.15 Aligned_cols=99 Identities=26% Similarity=0.396 Sum_probs=87.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++|+.+..+..|.+|||||||||+||||++++|++||.||||.+|||....++++++.+++..|.||+++|||.
T Consensus 118 V~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~ 197 (223)
T COG2884 118 VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL 197 (223)
T ss_pred HHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH
Confidence 45678899999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHhhcceeeeccccccc
Q psy6940 87 EEARQANTVFGGFFAPKLH 105 (123)
Q Consensus 87 ~~~~~~d~v~~~~~~~~~~ 105 (123)
+.+..+.+-+..+-.|+.+
T Consensus 198 ~lv~~~~~rvl~l~~Grl~ 216 (223)
T COG2884 198 ELVNRMRHRVLALEDGRLV 216 (223)
T ss_pred HHHHhccCcEEEEeCCEEE
Confidence 9998844444334444443
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.93 E-value=1.5e-25 Score=168.59 Aligned_cols=89 Identities=31% Similarity=0.386 Sum_probs=82.3
Q ss_pred HHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 9 EILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 9 e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
++++.+++. .+.++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||++
T Consensus 127 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 127 LLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 567788884 6789999999999999999999999999999999999999999999999999998766 89999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 207 ~~~~~~~d~i~~ 218 (228)
T cd03257 207 GVVAKIADRVAV 218 (228)
T ss_pred HHHHHhcCeEEE
Confidence 99987 999873
No 98
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.93 E-value=1.8e-25 Score=167.83 Aligned_cols=102 Identities=25% Similarity=0.362 Sum_probs=87.6
Q ss_pred HHHHHHc-CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRT-RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~-~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++.+ ++....++++.+||||||||++||||++.+|+++||||||+|||+..+..+++.|++++++|.|||++||++
T Consensus 113 ~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 113 ERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred HHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3566777 466778899999999999999999999999999999999999999999999999999877789999999999
Q ss_pred HHHHh-hcceeeecccccccccCCc
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++.. ||+++. +..|+.......
T Consensus 193 ~~~~~~~d~i~~-l~~G~i~~~~~~ 216 (222)
T cd03224 193 RFALEIADRAYV-LERGRVVLEGTA 216 (222)
T ss_pred HHHHHhccEEEE-eeCCeEEEeCCH
Confidence 99988 998874 345555544433
No 99
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2e-25 Score=170.09 Aligned_cols=105 Identities=30% Similarity=0.408 Sum_probs=89.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++..+.++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.+++++++|+|||++||++
T Consensus 122 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 122 AEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 34567888888888999999999999999999999999999999999999999999999999999876799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +..|+.......++
T Consensus 202 ~~~~~~~d~i~~-l~~g~i~~~~~~~~ 227 (242)
T PRK11124 202 EVARKTASRVVY-MENGHIVEQGDASC 227 (242)
T ss_pred HHHHHhcCEEEE-EECCEEEEeCCHHH
Confidence 99987 998873 23444444433333
No 100
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.93 E-value=2.3e-25 Score=169.44 Aligned_cols=104 Identities=30% Similarity=0.394 Sum_probs=89.5
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~~ 86 (123)
.++++.+++....++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.++++++ +|.|||++||++
T Consensus 114 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 114 AALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred HHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh
Confidence 4678888888888999999999999999999999999999999999999999999999999999875 589999999999
Q ss_pred HHHHhhcceeeecccccccccCCchh
Q psy6940 87 EEARQANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++..||+++. +-.|+.....+.++
T Consensus 194 ~~~~~~d~i~~-l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 194 DEIEADDRLVV-LHRGRVLADGAAAE 218 (236)
T ss_pred hhHhhCCEEEE-EeCCeEEEeCCHHH
Confidence 99866998873 33455544444433
No 101
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.7e-25 Score=183.72 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=90.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|.++++ .|+|||++||+
T Consensus 145 ~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd 224 (400)
T PRK10070 145 ALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224 (400)
T ss_pred HHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34678889999999999999999999999999999999999999999999999999999999999875 48999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +-.|+.....++.+
T Consensus 225 ~~~~~~~~Dri~v-L~~G~i~~~g~~~~ 251 (400)
T PRK10070 225 LDEAMRIGDRIAI-MQNGEVVQVGTPDE 251 (400)
T ss_pred HHHHHHhCCEEEE-EECCEEEecCCHHH
Confidence 999987 999873 33445444443333
No 102
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=1.5e-25 Score=186.20 Aligned_cols=102 Identities=21% Similarity=0.229 Sum_probs=90.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.++.++++.+|||||||||+||+||+.+|+++||||||+|||+..++.+.+.|++++++|.|||++||++
T Consensus 116 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~ 195 (490)
T PRK10938 116 CEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195 (490)
T ss_pred HHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 45678899998889999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeecccccccccCC
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+++.. ||+++. +-.|+.....+
T Consensus 196 ~~~~~~~d~v~~-l~~G~i~~~~~ 218 (490)
T PRK10938 196 DEIPDFVQFAGV-LADCTLAETGE 218 (490)
T ss_pred HHHHhhCCEEEE-EECCEEEEeCC
Confidence 99988 999883 23444443333
No 103
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.93 E-value=2.5e-25 Score=169.39 Aligned_cols=104 Identities=20% Similarity=0.252 Sum_probs=89.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.+..++++.+|||||+|||+||||++.+|++++|||||+|||+..+..+++.++++.+ ++|||++||++
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 202 (242)
T TIGR03411 124 IEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM 202 (242)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH
Confidence 35678888988888999999999999999999999999999999999999999999999999999875 78999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +..|+.....+..+
T Consensus 203 ~~~~~~~d~i~~-l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 203 EFVRSIADKVTV-LHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHhCCEEEE-EECCeEEeeCCHHH
Confidence 99987 999873 33455444444333
No 104
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.5e-25 Score=182.61 Aligned_cols=107 Identities=28% Similarity=0.305 Sum_probs=93.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.+++|.+|||||||||+|||||+.+|++++|||||++||+..+..+.+.++++.++ |.|+|++|||
T Consensus 130 v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd 209 (377)
T PRK11607 130 VNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD 209 (377)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 357788889999999999999999999999999999999999999999999999999999999988664 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++. +..|+.....++.++.
T Consensus 210 ~~ea~~laDri~v-l~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 210 QEEAMTMAGRIAI-MNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEEcCHHHHH
Confidence 999988 999873 4466666666655543
No 105
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.93 E-value=1.9e-25 Score=165.95 Aligned_cols=90 Identities=36% Similarity=0.424 Sum_probs=83.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||+|||+.+++.+.+.++++.++|.|||++||++
T Consensus 115 ~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 115 KKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 34678888998889999999999999999999999999999999999999999999999999999876799999999999
Q ss_pred HHHHhhccee
Q psy6940 87 EEARQANTVF 96 (123)
Q Consensus 87 ~~~~~~d~v~ 96 (123)
+.+..||+++
T Consensus 195 ~~~~~~d~i~ 204 (206)
T TIGR03608 195 EVAKQADRVI 204 (206)
T ss_pred HHHhhcCEEE
Confidence 8765599876
No 106
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.93 E-value=1.6e-25 Score=182.92 Aligned_cols=106 Identities=24% Similarity=0.297 Sum_probs=93.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.+.++.++ |+|||++|||
T Consensus 145 a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd 224 (382)
T TIGR03415 145 VDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 457889999999999999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....+++++
T Consensus 225 l~e~~~l~DrI~v-l~~G~iv~~g~~~ei 252 (382)
T TIGR03415 225 LDEALKIGNRIAI-MEGGRIIQHGTPEEI 252 (382)
T ss_pred HHHHHHhCCEEEE-EECCEEEEecCHHHH
Confidence 999987 999873 445555555555444
No 107
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.93 E-value=1.7e-25 Score=168.95 Aligned_cols=91 Identities=25% Similarity=0.337 Sum_probs=83.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||+
T Consensus 127 ~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 127 AKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred HHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356788889888889999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHhhcceee
Q psy6940 86 IEEARQANTVFG 97 (123)
Q Consensus 86 ~~~~~~~d~v~~ 97 (123)
++++..||+++.
T Consensus 207 ~~~~~~~d~i~~ 218 (228)
T PRK10584 207 LQLAARCDRRLR 218 (228)
T ss_pred HHHHHhCCEEEE
Confidence 998866998873
No 108
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3e-25 Score=172.56 Aligned_cols=103 Identities=21% Similarity=0.292 Sum_probs=90.5
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|.+++++|.|||++||+++
T Consensus 124 ~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 124 TAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred HHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45678889988889999999999999999999999999999999999999999999999999998877999999999999
Q ss_pred HHHh-hcceeeecccccccccCCchh
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++.. ||+++. ..|+.....+..+
T Consensus 204 ~~~~~~d~v~~--~~G~i~~~g~~~~ 227 (272)
T PRK15056 204 SVTEFCDYTVM--VKGTVLASGPTET 227 (272)
T ss_pred HHHHhCCEEEE--ECCEEEeecCHHh
Confidence 9987 998852 2566655444444
No 109
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.93 E-value=2.8e-25 Score=171.03 Aligned_cols=100 Identities=31% Similarity=0.444 Sum_probs=87.2
Q ss_pred HHHHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++++++... .++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||+
T Consensus 132 ~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~ 211 (257)
T PRK10619 132 AVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211 (257)
T ss_pred HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3567888888776 488999999999999999999999999999999999999999999999999987779999999999
Q ss_pred HHHHHh-hcceeeeccccccccc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLS 107 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~ 107 (123)
++++.. ||+++. +-.|+....
T Consensus 212 ~~~~~~~~d~i~~-l~~G~i~~~ 233 (257)
T PRK10619 212 MGFARHVSSHVIF-LHQGKIEEE 233 (257)
T ss_pred HHHHHHhcCEEEE-EECCEEEEe
Confidence 999987 999873 234444433
No 110
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=3e-25 Score=172.88 Aligned_cols=89 Identities=35% Similarity=0.505 Sum_probs=82.4
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+..++.+.+.|++++++|+|||++||++
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 126 REKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred HHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 4567788886 467999999999999999999999999999999999999999999999999999876789999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 206 ~~~~~~~d~i~ 216 (280)
T PRK13649 206 DDVANYADFVY 216 (280)
T ss_pred HHHHHhCCEEE
Confidence 99987 99987
No 111
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=186.73 Aligned_cols=103 Identities=22% Similarity=0.177 Sum_probs=89.7
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 127 ~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~ 206 (510)
T PRK09700 127 AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA 206 (510)
T ss_pred HHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45788889888889999999999999999999999999999999999999999999999999999877999999999999
Q ss_pred HHHh-hcceeeecccccccccCCch
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
++.. ||+++. +..|+......++
T Consensus 207 ~~~~~~d~v~~-l~~G~i~~~g~~~ 230 (510)
T PRK09700 207 EIRRICDRYTV-MKDGSSVCSGMVS 230 (510)
T ss_pred HHHHhCCEEEE-EECCEEeeecchh
Confidence 9988 999873 2344443333333
No 112
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.93 E-value=1.6e-25 Score=176.75 Aligned_cols=89 Identities=28% Similarity=0.412 Sum_probs=83.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++.+..++++..||+|||||++||+||+.+|+++||||||+|||+.+++.+++.++++++ ++|||++||++
T Consensus 114 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l 192 (301)
T TIGR03522 114 VEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM 192 (301)
T ss_pred HHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 45678889999999999999999999999999999999999999999999999999999999999864 79999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 193 ~~~~~~~d~i~ 203 (301)
T TIGR03522 193 QEVEAICDRVI 203 (301)
T ss_pred HHHHHhCCEEE
Confidence 99998 99987
No 113
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-25 Score=172.33 Aligned_cols=102 Identities=25% Similarity=0.262 Sum_probs=88.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++++++.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|.+++++ |.|||++||+
T Consensus 128 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred HHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356788889888889999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCC
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
++++.. ||+++. +-.|+......
T Consensus 208 ~~~i~~~~d~i~~-l~~G~i~~~~~ 231 (265)
T PRK10575 208 INMAARYCDYLVA-LRGGEMIAQGT 231 (265)
T ss_pred HHHHHHhCCEEEE-EECCeEEEecC
Confidence 999987 999872 23444443333
No 114
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.93 E-value=2.2e-25 Score=172.00 Aligned_cols=104 Identities=24% Similarity=0.358 Sum_probs=89.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++++++.+..++++.+||+||||||+||||++.+|+++||||||+|||+..++.+.+.|++++++ |.|||++||+
T Consensus 133 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred HHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456788899988889999999999999999999999999999999999999999999999999998764 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCch
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
++++.. ||+++. +..|+.....+.+
T Consensus 213 ~~~~~~~~d~i~~-l~~g~i~~~g~~~ 238 (262)
T PRK09984 213 VDYALRYCERIVA-LRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHH
Confidence 999887 998873 2344444433333
No 115
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.5e-25 Score=174.00 Aligned_cols=101 Identities=31% Similarity=0.324 Sum_probs=88.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|++++++ |.|||++||+
T Consensus 121 ~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred HHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 456788889999999999999999999999999999999999999999999999999999999999876 8999999999
Q ss_pred HHHHHhhcceeeecccccccccC
Q psy6940 86 IEEARQANTVFGGFFAPKLHLSL 108 (123)
Q Consensus 86 ~~~~~~~d~v~~~~~~~~~~~~~ 108 (123)
++++..||+++. +..|+.....
T Consensus 201 ~~~~~~~d~i~~-l~~G~i~~~g 222 (279)
T PRK13635 201 LDEAAQADRVIV-MNKGEILEEG 222 (279)
T ss_pred HHHHHcCCEEEE-EECCEEEEEC
Confidence 999877998873 2334443333
No 116
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.93 E-value=2.2e-25 Score=167.33 Aligned_cols=101 Identities=30% Similarity=0.429 Sum_probs=88.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.++++++ +.|||++||++
T Consensus 114 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~ 192 (220)
T cd03263 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM 192 (220)
T ss_pred HHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH
Confidence 35678888988888999999999999999999999999999999999999999999999999999875 58999999999
Q ss_pred HHHHh-hcceeeecccccccccCC
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+.+.. ||+++. +-.|+.....+
T Consensus 193 ~~~~~~~d~i~~-l~~g~i~~~~~ 215 (220)
T cd03263 193 DEAEALCDRIAI-MSDGKLRCIGS 215 (220)
T ss_pred HHHHHhcCEEEE-EECCEEEecCC
Confidence 99987 998873 34555544433
No 117
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.9e-25 Score=173.41 Aligned_cols=105 Identities=33% Similarity=0.455 Sum_probs=89.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.+++++++ |.|||++||+
T Consensus 125 ~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 125 VDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356788889999999999999999999999999999999999999999999999999999999999764 9999999999
Q ss_pred HHHHHhhcceeeecccccccccCCchh
Q psy6940 86 IEEARQANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++..||+++. +..|+.....++.+
T Consensus 205 ~~~~~~~d~v~~-l~~G~i~~~g~~~~ 230 (280)
T PRK13633 205 MEEAVEADRIIV-MDSGKVVMEGTPKE 230 (280)
T ss_pred hHHHhcCCEEEE-EECCEEEEecCHHH
Confidence 999877998873 23444444343333
No 118
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.1e-25 Score=168.99 Aligned_cols=105 Identities=27% Similarity=0.377 Sum_probs=90.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++.+||||||||++||||++.+|+++||||||+|||+..+..+.+.+.+++++|.|||++||++
T Consensus 118 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 118 ANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH
Confidence 45678888888888999999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +..|+.....+..+
T Consensus 198 ~~~~~~~d~v~~-l~~G~i~~~~~~~~ 223 (241)
T PRK10895 198 RETLAVCERAYI-VSQGHLIAHGTPTE 223 (241)
T ss_pred HHHHHhcCEEEE-EeCCeEEeeCCHHH
Confidence 99887 998873 34455544444433
No 119
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.1e-25 Score=172.41 Aligned_cols=91 Identities=31% Similarity=0.356 Sum_probs=84.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++++++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +|.|||++||+
T Consensus 109 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~ 188 (255)
T PRK11248 109 AHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 (255)
T ss_pred HHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35678889998888999999999999999999999999999999999999999999999999999854 58999999999
Q ss_pred HHHHHh-hcceee
Q psy6940 86 IEEARQ-ANTVFG 97 (123)
Q Consensus 86 ~~~~~~-~d~v~~ 97 (123)
++++.. ||+++.
T Consensus 189 ~~~~~~~~d~i~~ 201 (255)
T PRK11248 189 IEEAVFMATELVL 201 (255)
T ss_pred HHHHHHhCCEEEE
Confidence 999988 999873
No 120
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.6e-25 Score=186.93 Aligned_cols=105 Identities=28% Similarity=0.364 Sum_probs=91.0
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++++++. ...++++.+|||||||||+||||++.+|++|||||||+|||+.+++.++++|.+++++|.|||++|||
T Consensus 385 ~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd 464 (506)
T PRK13549 385 ILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE 464 (506)
T ss_pred HHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 35678889986 57899999999999999999999999999999999999999999999999999998789999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +..|+........+
T Consensus 465 ~~~~~~~~d~v~~-l~~G~i~~~~~~~~ 491 (506)
T PRK13549 465 LPEVLGLSDRVLV-MHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHhCCEEEE-EECCEEEEEecccc
Confidence 999988 999872 44555544444443
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.2e-25 Score=166.65 Aligned_cols=89 Identities=35% Similarity=0.447 Sum_probs=82.8
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.++++++ +.|||++||+++
T Consensus 112 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~ 190 (211)
T cd03264 112 DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE 190 (211)
T ss_pred HHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence 4678888988888999999999999999999999999999999999999999999999999999875 589999999999
Q ss_pred HHHh-hcceee
Q psy6940 88 EARQ-ANTVFG 97 (123)
Q Consensus 88 ~~~~-~d~v~~ 97 (123)
++.. ||+++.
T Consensus 191 ~~~~~~d~i~~ 201 (211)
T cd03264 191 DVESLCNQVAV 201 (211)
T ss_pred HHHHhCCEEEE
Confidence 9987 999873
No 122
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=2.7e-25 Score=169.59 Aligned_cols=103 Identities=28% Similarity=0.392 Sum_probs=88.7
Q ss_pred HHHHHHHcCcch--hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 7 PAEILTRTRDFA--LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 7 ~~e~l~~~~l~~--~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
..++++.+++.. +.++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|++++++ |.|||++|
T Consensus 114 ~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~s 193 (242)
T cd03295 114 ADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242)
T ss_pred HHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346788888875 789999999999999999999999999999999999999999999999999998765 89999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCc
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
|+++++.. ||+++. +..|+.......
T Consensus 194 H~~~~~~~~~d~i~~-l~~G~i~~~~~~ 220 (242)
T cd03295 194 HDIDEAFRLADRIAI-MKNGEIVQVGTP 220 (242)
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEecCH
Confidence 99999887 998873 344554443333
No 123
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-25 Score=171.08 Aligned_cols=104 Identities=24% Similarity=0.260 Sum_probs=89.7
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.|.++.++ |.|||++||++
T Consensus 125 ~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 125 TKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46788889988899999999999999999999999999999999999999999999999999998764 89999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +..|+......+.+
T Consensus 205 ~~~~~~~d~i~~-l~~G~i~~~g~~~~ 230 (265)
T PRK10253 205 NQACRYASHLIA-LREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 99988 999873 33444444333333
No 124
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.93 E-value=2.5e-25 Score=167.75 Aligned_cols=90 Identities=32% Similarity=0.457 Sum_probs=84.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.+..++++.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.+.+++++|.|||++||++
T Consensus 105 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 105 IDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL 184 (223)
T ss_pred HHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45678889998889999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 185 ~~~~~~~d~i~ 195 (223)
T TIGR03740 185 SEVQQLADHIG 195 (223)
T ss_pred HHHHHhcCEEE
Confidence 99987 99987
No 125
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=2.3e-25 Score=169.27 Aligned_cols=105 Identities=23% Similarity=0.335 Sum_probs=88.2
Q ss_pred HHHHHHc-CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRT-RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~-~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++.+ ++.+..+.++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++
T Consensus 118 ~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 118 KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 3456666 466677889999999999999999999999999999999999999999999999999887799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++.. ||+++. +-.|+.......+++
T Consensus 198 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 224 (237)
T PRK11614 198 NQALKLADRGYV-LENGHVVLEDTGDAL 224 (237)
T ss_pred HHHHhhCCEEEE-EeCCEEEeeCCHHHH
Confidence 99887 999873 334555444444443
No 126
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.1e-25 Score=168.87 Aligned_cols=104 Identities=28% Similarity=0.284 Sum_probs=88.9
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. ++.++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|++++++ |.|||++||
T Consensus 111 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 111 VEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45678888986 6789999999999999999999999999999999999999999999999999998764 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCch
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++++.. ||+++. +-.|+......+.
T Consensus 191 ~~~~~~~~~d~i~~-l~~G~i~~~~~~~ 217 (241)
T PRK14250 191 NMEQAKRIGDYTAF-LNKGILVEYAKTY 217 (241)
T ss_pred cHHHHHHhCCEEEE-EeCCEEEEeCCHH
Confidence 9999987 999872 3344444333333
No 127
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.93 E-value=2.2e-25 Score=190.75 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=93.3
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. ...+++|++|||||||||+|||||+.+|++|||||||+|||+..+..+.++|++++++ |.|||++||
T Consensus 443 ~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isH 522 (623)
T PRK10261 443 VAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522 (623)
T ss_pred HHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35678889985 6789999999999999999999999999999999999999999999999999999765 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|++++.. ||+++. ++.|+......+.++
T Consensus 523 dl~~v~~~~dri~v-l~~G~iv~~g~~~~i 551 (623)
T PRK10261 523 DMAVVERISHRVAV-MYLGQIVEIGPRRAV 551 (623)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEecCHHHH
Confidence 9999988 999874 566666655555554
No 128
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=7.2e-26 Score=183.24 Aligned_cols=108 Identities=28% Similarity=0.349 Sum_probs=98.6
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+..++++.+++.++.+++|.+|||||||||++||||+.+|++++||||+++||...+.++...++++.++ |.|.|+|||
T Consensus 116 rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTH 195 (352)
T COG3842 116 RVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTH 195 (352)
T ss_pred HHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999766 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|.+++.. +|||.. +-.|+.....++.++-
T Consensus 196 DqeEAl~msDrI~V-m~~G~I~Q~gtP~eiY 225 (352)
T COG3842 196 DQEEALAMSDRIAV-MNDGRIEQVGTPEEIY 225 (352)
T ss_pred CHHHHhhhccceEE-ccCCceeecCCHHHHh
Confidence 9999998 999874 6677777777777664
No 129
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=1.9e-25 Score=167.83 Aligned_cols=107 Identities=28% Similarity=0.362 Sum_probs=93.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+.++.++|+.++.++.|.+|||||||||++||+|+++-++++|||||++|||.-+.++..++.+++++ +.|+++|||.
T Consensus 110 v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~ 189 (231)
T COG3840 110 VEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189 (231)
T ss_pred HHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 456889999999999999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++.+.. +|+++- +-.|+........+++
T Consensus 190 ~~Da~~ia~~~~f-l~~Gri~~~g~~~~~~ 218 (231)
T COG3840 190 PEDAARIADRVVF-LDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHhhhceEE-EeCCEEEeeccHHHHh
Confidence 999998 888872 2344544444444444
No 130
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.93 E-value=4.9e-25 Score=168.59 Aligned_cols=103 Identities=27% Similarity=0.342 Sum_probs=87.9
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++|
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivs 200 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVT 200 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEe
Confidence 4567888887 678899999999999999999999999999999999999999999999999999876 48999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +-.|+........+
T Consensus 201 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 201 HNMQQAARISDRTAF-FYDGELVEYGPTEQ 229 (247)
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 99999987 999873 33455544444433
No 131
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.93 E-value=4.7e-25 Score=169.81 Aligned_cols=102 Identities=30% Similarity=0.359 Sum_probs=87.5
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.++++.++ |.|||++||+
T Consensus 132 ~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~ 211 (258)
T PRK11701 132 GDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211 (258)
T ss_pred HHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 4678888886 4778999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
++++.. ||+++. +-.|+......+
T Consensus 212 ~~~~~~~~d~i~~-l~~g~i~~~~~~ 236 (258)
T PRK11701 212 LAVARLLAHRLLV-MKQGRVVESGLT 236 (258)
T ss_pred HHHHHHhcCEEEE-EECCEEEEeCCH
Confidence 999987 998873 234444443333
No 132
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.93 E-value=4.7e-25 Score=169.65 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=88.9
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++++++.++.++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|++++++|.|||++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (256)
T TIGR03873 119 DRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198 (256)
T ss_pred HHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45788888888899999999999999999999999999999999999999999999999999998877899999999999
Q ss_pred HHHh-hcceeeecccccccccCCc
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
++.. ||+++. +-.|+.......
T Consensus 199 ~~~~~~d~i~~-l~~G~i~~~g~~ 221 (256)
T TIGR03873 199 LAASYCDHVVV-LDGGRVVAAGPP 221 (256)
T ss_pred HHHHhCCEEEE-EeCCCEEEecCH
Confidence 9987 999873 234444443333
No 133
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.7e-25 Score=180.28 Aligned_cols=108 Identities=29% Similarity=0.321 Sum_probs=98.8
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+..++.+.+++.++.+++|.+|||||||||++|||++++|++++||||+|+||...+..+...|++++++ |.|+|++||
T Consensus 113 rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTH 192 (338)
T COG3839 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTH 192 (338)
T ss_pred HHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 3457888899999999999999999999999999999999999999999999999999999999999876 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|..++.. +|++.. +..|+.....++.++.
T Consensus 193 Dq~EAmtladri~V-m~~G~i~Q~g~p~ely 222 (338)
T COG3839 193 DQVEAMTLADRIVV-MNDGRIQQVGTPLELY 222 (338)
T ss_pred CHHHHHhhCCEEEE-EeCCeeeecCChHHHh
Confidence 9999998 999885 3388888888887765
No 134
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.93 E-value=3.2e-25 Score=171.71 Aligned_cols=107 Identities=28% Similarity=0.360 Sum_probs=91.1
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. .+.++++.+||||||||++||||++.+|+++||||||+|||+..+..+.+.|+++.++ |.|||++||
T Consensus 130 ~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 130 IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred HHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 35678888885 6789999999999999999999999999999999999999999999999999998765 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+++.+.. ||+++. +..|+........++.
T Consensus 210 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 210 DLRLVQSFCQRVAV-MDKGQIVEECDVAQLL 239 (265)
T ss_pred CHHHHHHHhcEEEE-EeCCEEEEECCHHHHc
Confidence 9999987 999874 2355555544444443
No 135
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.93 E-value=6.2e-25 Score=169.66 Aligned_cols=105 Identities=26% Similarity=0.295 Sum_probs=89.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEE
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLL------HSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTI 79 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tv 79 (123)
..++++.+++.+..++++.+|||||||||+|||||+ .+|+++||||||+|||+..+..+.+.|+++. ++|.||
T Consensus 115 ~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 194 (258)
T PRK13548 115 VAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194 (258)
T ss_pred HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 356788889988899999999999999999999999 5999999999999999999999999999987 568999
Q ss_pred EEEeCCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 80 IITTHYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 80 iivtH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|++||+++++.. ||+++. +-.|+........+
T Consensus 195 ii~sH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 227 (258)
T PRK13548 195 IVVLHDLNLAARYADRIVL-LHQGRLVADGTPAE 227 (258)
T ss_pred EEEECCHHHHHHhcCEEEE-EECCEEEeeCCHHH
Confidence 999999999987 999873 23444444333333
No 136
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=4.8e-25 Score=172.71 Aligned_cols=89 Identities=33% Similarity=0.441 Sum_probs=82.2
Q ss_pred HHHHHHcCc-chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 8 AEILTRTRD-FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l-~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.++++.+++ .++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|+++.++ |+|||++||+
T Consensus 131 ~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 131 PELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred HHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 456788888 46889999999999999999999999999999999999999999999999999998764 8999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 211 ~~~~~~~~d~i~ 222 (289)
T PRK13645 211 MDQVLRIADEVI 222 (289)
T ss_pred HHHHHHhCCEEE
Confidence 999887 99987
No 137
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.93 E-value=4.2e-25 Score=167.54 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=83.4
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.+.+++++|.|||++||+++
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~ 203 (224)
T cd03220 124 DEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS 203 (224)
T ss_pred HHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45677788888889999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred HHHh-hcceee
Q psy6940 88 EARQ-ANTVFG 97 (123)
Q Consensus 88 ~~~~-~d~v~~ 97 (123)
++.. ||+++.
T Consensus 204 ~~~~~~d~i~~ 214 (224)
T cd03220 204 SIKRLCDRALV 214 (224)
T ss_pred HHHHhCCEEEE
Confidence 9987 998873
No 138
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=3.4e-25 Score=171.94 Aligned_cols=90 Identities=30% Similarity=0.421 Sum_probs=84.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|.++.+ .|.|||++||+
T Consensus 114 ~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45678899998888999999999999999999999999999999999999999999999999999865 48999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 194 ~~~~~~~~d~i~ 205 (257)
T PRK11247 194 VSEAVAMADRVL 205 (257)
T ss_pred HHHHHHhCCEEE
Confidence 999887 99987
No 139
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.92 E-value=4.4e-25 Score=165.57 Aligned_cols=91 Identities=27% Similarity=0.433 Sum_probs=84.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.++|.++.++ |.|||++||+
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 109 VVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred HHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 346788899988899999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceee
Q psy6940 86 IEEARQ-ANTVFG 97 (123)
Q Consensus 86 ~~~~~~-~d~v~~ 97 (123)
++++.. ||+++.
T Consensus 189 ~~~~~~~~d~v~~ 201 (213)
T TIGR01277 189 LSDARAIASQIAV 201 (213)
T ss_pred HHHHHhhcCeEEE
Confidence 999887 999874
No 140
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=4.3e-25 Score=166.97 Aligned_cols=105 Identities=28% Similarity=0.389 Sum_probs=88.8
Q ss_pred HHHHHHcC-cchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 8 AEILTRTR-DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~-l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.++++.++ +....++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.|.+++++ |.|||++||+
T Consensus 112 ~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 191 (230)
T TIGR03410 112 DEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY 191 (230)
T ss_pred HHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 45666776 566789999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +..|+.......+++
T Consensus 192 ~~~~~~~~d~v~~-l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 192 LDFARELADRYYV-MERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHhCCEEEE-EECCEEEEECCHHHc
Confidence 999987 998873 334555444444444
No 141
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.5e-25 Score=184.92 Aligned_cols=90 Identities=23% Similarity=0.275 Sum_probs=84.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++....++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|.+++++|.|||++||++
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 124 AQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred HHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 35678889998888999999999999999999999999999999999999999999999999999977799999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 204 ~~~~~~~d~v~ 214 (506)
T PRK13549 204 NEVKAISDTIC 214 (506)
T ss_pred HHHHHhcCEEE
Confidence 99988 99988
No 142
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.92 E-value=4.7e-25 Score=162.02 Aligned_cols=88 Identities=31% Similarity=0.362 Sum_probs=82.4
Q ss_pred HHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHH
Q psy6940 10 ILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEE 88 (123)
Q Consensus 10 ~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~ 88 (123)
+++.+++.+..++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+.+++++ |.|||++||++++
T Consensus 81 ~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 81 ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677888888889999999999999999999999999999999999999999999999999998776 8999999999999
Q ss_pred HHh-hcceee
Q psy6940 89 ARQ-ANTVFG 97 (123)
Q Consensus 89 ~~~-~d~v~~ 97 (123)
+.. ||+++.
T Consensus 161 ~~~~~d~~~~ 170 (180)
T cd03214 161 AARYADRVIL 170 (180)
T ss_pred HHHhCCEEEE
Confidence 977 999883
No 143
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6.2e-25 Score=171.36 Aligned_cols=104 Identities=27% Similarity=0.361 Sum_probs=89.7
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
+++++.+++.++.++++..||||||||++|||||+.+|+++||||||+|||+.+++.+.+.+.+++++ |.|||++||++
T Consensus 122 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred HHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56788889988999999999999999999999999999999999999999999999999999999875 99999999999
Q ss_pred HHHHhhcceeeecccccccccCCchh
Q psy6940 87 EEARQANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++..||+++. +..|+........+
T Consensus 202 ~~~~~~d~i~~-l~~G~i~~~g~~~~ 226 (277)
T PRK13642 202 DEAASSDRILV-MKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 99866998873 23444444444333
No 144
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=4e-25 Score=184.91 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=90.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.++|+++.++ |.|||+||||
T Consensus 149 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 149 AVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred HHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 456788899988889999999999999999999999999999999999999999999999999998654 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCch
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
++++.. ||+++. +-.|+.....+..
T Consensus 229 ~~~~~~~~d~i~~-l~~G~i~~~g~~~ 254 (520)
T TIGR03269 229 PEVIEDLSDKAIW-LENGEIKEEGTPD 254 (520)
T ss_pred HHHHHHhcCEEEE-EeCCEEeeecCHH
Confidence 999987 999883 3345544443433
No 145
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=2.7e-25 Score=185.98 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=90.2
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+++++++++. ...++++.+|||||||||+||||++.+|++|||||||+|||+.+++.+.+.|++++++|.|||++|||+
T Consensus 384 ~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 384 ERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred HHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 4678888986 678999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred HHHHh-hcceeeecccccccccCCch
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++.. ||+++. +..|+....++++
T Consensus 464 ~~i~~~~d~i~~-l~~G~i~~~~~~~ 488 (510)
T PRK15439 464 EEIEQMADRVLV-MHQGEISGALTGA 488 (510)
T ss_pred HHHHHhCCEEEE-EECCEEEEEEccc
Confidence 99998 999883 3345554444443
No 146
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.8e-25 Score=189.32 Aligned_cols=106 Identities=23% Similarity=0.335 Sum_probs=91.2
Q ss_pred HHHHHHHcCcc---hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE
Q psy6940 7 PAEILTRTRDF---ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~---~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv 82 (123)
..++++.+++. ...++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+++++++++ |.|||+|
T Consensus 146 ~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~i 225 (623)
T PRK10261 146 AKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI 225 (623)
T ss_pred HHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34678888884 4578999999999999999999999999999999999999999999999999999765 9999999
Q ss_pred eCCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 83 THYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 83 tH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|||++++.. ||+++. +..|+.....++.++
T Consensus 226 tHdl~~~~~~adri~v-l~~G~i~~~g~~~~~ 256 (623)
T PRK10261 226 THDMGVVAEIADRVLV-MYQGEAVETGSVEQI 256 (623)
T ss_pred cCCHHHHHHhCCEEEE-eeCCeecccCCHHHh
Confidence 999999988 999984 445666555544443
No 147
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.92 E-value=6e-25 Score=170.48 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=87.3
Q ss_pred HHHHHHcCc-chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 8 AEILTRTRD-FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l-~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.++++.+++ ....+.++.+||+||||||+||||++.+|+++||||||+|||+.+++.+.+.|.++.++ |.|||++||+
T Consensus 130 ~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 130 IETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 467888888 46778899999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCC
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
++++.. ||+++. +-.|+......
T Consensus 210 ~~~~~~~~d~i~~-l~~G~i~~~~~ 233 (267)
T PRK15112 210 LGMMKHISDQVLV-MHQGEVVERGS 233 (267)
T ss_pred HHHHHHhcCEEEE-EECCEEEecCC
Confidence 999988 999873 23444443333
No 148
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=4.2e-25 Score=185.27 Aligned_cols=106 Identities=25% Similarity=0.311 Sum_probs=91.3
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+++.|++++++ |.|||++||
T Consensus 405 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH 484 (529)
T PRK15134 405 VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISH 484 (529)
T ss_pred HHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeC
Confidence 34678889986 5789999999999999999999999999999999999999999999999999999865 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|++++.. ||+++. +..|+........++
T Consensus 485 d~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 513 (529)
T PRK15134 485 DLHVVRALCHQVIV-LRQGEVVEQGDCERV 513 (529)
T ss_pred CHHHHHHhcCeEEE-EECCEEEEEcCHHHH
Confidence 9999988 999884 345555544444443
No 149
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=6e-25 Score=171.97 Aligned_cols=103 Identities=31% Similarity=0.356 Sum_probs=89.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||+
T Consensus 124 ~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 124 VRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356788899999999999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHhhcceeeecccccccccCCc
Q psy6940 86 IEEARQANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 86 ~~~~~~~d~v~~~~~~~~~~~~~~~ 110 (123)
++++..||+++. +..|+......+
T Consensus 204 ~~~~~~~d~i~~-l~~G~i~~~g~~ 227 (282)
T PRK13640 204 IDEANMADQVLV-LDDGKLLAQGSP 227 (282)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCH
Confidence 999866999873 344554444433
No 150
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=4.5e-25 Score=170.29 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=84.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++....++++.+|||||||||+||+||+.+|+++||||||++||+..+..+.+.|++++++ |+|||++||+
T Consensus 96 ~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 96 KTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356888899988899999999999999999999999999999999999999999999999999998764 8999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 176 ~~~~~~~~d~i~ 187 (246)
T cd03237 176 IIMIDYLADRLI 187 (246)
T ss_pred HHHHHHhCCEEE
Confidence 999988 99987
No 151
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=4.8e-25 Score=184.51 Aligned_cols=104 Identities=22% Similarity=0.234 Sum_probs=90.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++....++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|++++++|.|||++||++
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 200 (510)
T PRK15439 121 MKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL 200 (510)
T ss_pred HHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678889998888999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCch
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++.. ||+++. +..|+.....+..
T Consensus 201 ~~~~~~~d~i~~-l~~G~i~~~g~~~ 225 (510)
T PRK15439 201 PEIRQLADRISV-MRDGTIALSGKTA 225 (510)
T ss_pred HHHHHhCCEEEE-EECCEEEEecChH
Confidence 99988 999873 3344444443333
No 152
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.92 E-value=7.4e-25 Score=166.44 Aligned_cols=102 Identities=26% Similarity=0.228 Sum_probs=86.2
Q ss_pred HHHHHHcCcc-hhcCCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 8 AEILTRTRDF-ALRKLLPN-WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~-~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.++++++++. ...++++. +||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||+
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~ 203 (243)
T TIGR01978 124 KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203 (243)
T ss_pred HHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec
Confidence 4567778886 46788887 599999999999999999999999999999999999999999999998778999999999
Q ss_pred HHHHHh--hcceeeecccccccccCCc
Q psy6940 86 IEEARQ--ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 86 ~~~~~~--~d~v~~~~~~~~~~~~~~~ 110 (123)
++++.. ||+++. +..|+.....+.
T Consensus 204 ~~~~~~~~~d~i~~-l~~G~i~~~g~~ 229 (243)
T TIGR01978 204 QRLLNYIKPDYVHV-LLDGRIVKSGDV 229 (243)
T ss_pred HHHHHhhcCCeEEE-EeCCEEEEecCH
Confidence 999976 688763 345555444443
No 153
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.92 E-value=7.2e-25 Score=168.09 Aligned_cols=103 Identities=29% Similarity=0.356 Sum_probs=89.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.++ |.|||++||+
T Consensus 127 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 206 (252)
T TIGR03005 127 AMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206 (252)
T ss_pred HHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 356788889888889999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
++++.. ||+++. +-+|+.......
T Consensus 207 ~~~~~~~~d~i~~-l~~G~i~~~g~~ 231 (252)
T TIGR03005 207 MGFAREFADRVCF-FDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHhcCEEEE-EECCEEEEeCCH
Confidence 999977 999873 344554444333
No 154
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.92 E-value=7.3e-25 Score=167.97 Aligned_cols=102 Identities=29% Similarity=0.333 Sum_probs=87.5
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. ...++++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||
T Consensus 128 ~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH 207 (253)
T TIGR02323 128 AHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207 (253)
T ss_pred HHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 34668888886 4789999999999999999999999999999999999999999999999999998654 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCC
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+++++.. ||+++. +..|+......
T Consensus 208 ~~~~~~~~~d~~~~-l~~G~i~~~~~ 232 (253)
T TIGR02323 208 DLGVARLLAQRLLV-MQQGRVVESGL 232 (253)
T ss_pred CHHHHHHhcCEEEE-EECCEEEEECC
Confidence 9999987 998873 33444444333
No 155
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=4e-25 Score=184.34 Aligned_cols=90 Identities=24% Similarity=0.317 Sum_probs=84.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|++++++|.|||++|||+
T Consensus 122 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 122 ADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred HHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35678889998888999999999999999999999999999999999999999999999999999977799999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 202 ~~~~~~~d~i~ 212 (501)
T PRK10762 202 KEIFEICDDVT 212 (501)
T ss_pred HHHHHhCCEEE
Confidence 99988 99998
No 156
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=4.7e-25 Score=183.91 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=87.2
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++++++. +..++++.+|||||||||+||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++|||
T Consensus 375 ~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd 454 (501)
T PRK10762 375 VSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454 (501)
T ss_pred HHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34678888984 67899999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHh-hcceeeeccccccc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLH 105 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~ 105 (123)
++++.. ||+++. +..|+..
T Consensus 455 ~~~~~~~~d~v~~-l~~G~i~ 474 (501)
T PRK10762 455 MPEVLGMSDRILV-MHEGRIS 474 (501)
T ss_pred HHHHHhhCCEEEE-EECCEEE
Confidence 999988 999883 2334443
No 157
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=9.3e-25 Score=168.36 Aligned_cols=104 Identities=27% Similarity=0.304 Sum_probs=87.8
Q ss_pred HHHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++ ....++++.+|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|++++ +|.|||++|
T Consensus 132 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivs 210 (258)
T PRK14268 132 ENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVT 210 (258)
T ss_pred HHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEE
Confidence 457777776 345688999999999999999999999999999999999999999999999999986 479999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++. +-.|+......+.++
T Consensus 211 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 211 HNMQQAARISDYTGF-FLMGELIEFGQTRQI 240 (258)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHHH
Confidence 99999987 999874 345555555444444
No 158
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.92 E-value=8.3e-25 Score=164.83 Aligned_cols=89 Identities=28% Similarity=0.372 Sum_probs=81.6
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++.+++.+ +.++++.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+.+++++++|.|||++||++
T Consensus 130 ~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~ 209 (224)
T TIGR02324 130 RELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209 (224)
T ss_pred HHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 45677888765 45789999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 210 ~~~~~~~d~i~ 220 (224)
T TIGR02324 210 EVRELVADRVM 220 (224)
T ss_pred HHHHHhcceeE
Confidence 99987 99987
No 159
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.92 E-value=3.4e-25 Score=163.46 Aligned_cols=82 Identities=35% Similarity=0.536 Sum_probs=76.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++.+||+|||||++|||||+.+|+++||||||+|||+..++.+.+.|.+++++|.|||++||++
T Consensus 108 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 108 VREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 35678888988889999999999999999999999999999999999999999999999999999887799999999998
Q ss_pred HH
Q psy6940 87 EE 88 (123)
Q Consensus 87 ~~ 88 (123)
++
T Consensus 188 ~~ 189 (190)
T TIGR01166 188 DL 189 (190)
T ss_pred cc
Confidence 75
No 160
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1e-24 Score=167.14 Aligned_cols=104 Identities=26% Similarity=0.365 Sum_probs=87.7
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++. ++.|||++|
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivt 202 (250)
T PRK14245 124 EETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVT 202 (250)
T ss_pred HHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 4567777764 35688999999999999999999999999999999999999999999999999985 579999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++. +..|+........++
T Consensus 203 H~~~~~~~~~d~v~~-l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 203 HNMQQAARVSDKTAF-FYMGEMVEYDDTKKI 232 (250)
T ss_pred CCHHHHHhhCCEEEE-EECCEEEEECCHHHH
Confidence 99999987 999874 345555555444444
No 161
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.92 E-value=4.9e-25 Score=184.86 Aligned_cols=90 Identities=30% Similarity=0.393 Sum_probs=82.9
Q ss_pred HHHHHHHcCcch---hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE
Q psy6940 7 PAEILTRTRDFA---LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~~---~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv 82 (123)
.+++++.+++.+ ..++++.+|||||||||+|||||+.+|+++||||||++||+..+..+.++|++++++ |.|||+|
T Consensus 134 ~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~v 213 (529)
T PRK15134 134 ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFI 213 (529)
T ss_pred HHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 356788888864 468999999999999999999999999999999999999999999999999999765 8999999
Q ss_pred eCCHHHHHh-hccee
Q psy6940 83 THYIEEARQ-ANTVF 96 (123)
Q Consensus 83 tH~~~~~~~-~d~v~ 96 (123)
||+++++.. ||+++
T Consensus 214 tHd~~~~~~~~dri~ 228 (529)
T PRK15134 214 THNLSIVRKLADRVA 228 (529)
T ss_pred cCcHHHHHHhcCEEE
Confidence 999999988 99998
No 162
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.92 E-value=1e-24 Score=167.79 Aligned_cols=104 Identities=23% Similarity=0.273 Sum_probs=87.7
Q ss_pred HHHHHHcCcch---hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 8 AEILTRTRDFA---LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~---~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
.++++.+++.+ ..++++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+.+.|+++.++ |.|||++|
T Consensus 119 ~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~s 198 (254)
T PRK10418 119 TAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVT 198 (254)
T ss_pred HHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 45778888765 568899999999999999999999999999999999999999999999999998765 89999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +-.|+........+
T Consensus 199 H~~~~~~~~~d~v~~-l~~G~i~~~~~~~~ 227 (254)
T PRK10418 199 HDMGVVARLADDVAV-MSHGRIVEQGDVET 227 (254)
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEecCHHH
Confidence 99999987 998873 23444444444333
No 163
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=5.1e-25 Score=183.89 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=87.2
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++++++. +..++++++|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|++++++|.|||++|||+
T Consensus 390 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 390 ENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred HHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 4678889986 778999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeeccccccc
Q psy6940 87 EEARQ-ANTVFGGFFAPKLH 105 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~ 105 (123)
+++.. ||+++. +..|+..
T Consensus 470 ~~~~~~~d~i~~-l~~G~i~ 488 (510)
T PRK09700 470 PEIITVCDRIAV-FCEGRLT 488 (510)
T ss_pred HHHHhhCCEEEE-EECCEEE
Confidence 99988 999873 3344443
No 164
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=166.78 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=85.1
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+|||||||||+||||++.+|+++||||||+|||+..+..+.+.|+++. +|.|||++|
T Consensus 127 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~t 205 (253)
T PRK14242 127 ERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVT 205 (253)
T ss_pred HHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 3456677763 34688899999999999999999999999999999999999999999999999985 478999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +-.|+........+
T Consensus 206 H~~~~~~~~~d~v~~-l~~G~i~~~g~~~~ 234 (253)
T PRK14242 206 HNMQQAARVSDVTAF-FYMGKLIEVGPTEQ 234 (253)
T ss_pred ecHHHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 99999987 999873 23444444444433
No 165
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.2e-24 Score=166.96 Aligned_cols=104 Identities=28% Similarity=0.354 Sum_probs=87.3
Q ss_pred HHHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++ .+..++++.+||||||||++|||||+.+|+++||||||+|||+.++..+++.|++++ ++.|||++|
T Consensus 128 ~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~s 206 (254)
T PRK14273 128 EQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVT 206 (254)
T ss_pred HHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 345666665 345788999999999999999999999999999999999999999999999999986 478999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++. +..|+........++
T Consensus 207 H~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 207 HNMQQAGRISDRTAF-FLNGCIEEESSTDEL 236 (254)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHHH
Confidence 99999987 999873 445665555555444
No 166
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.92 E-value=1.4e-24 Score=166.90 Aligned_cols=90 Identities=26% Similarity=0.346 Sum_probs=83.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEE
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLH-------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI 79 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~-------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv 79 (123)
.+++++.+++.+..++++..||+|||||++|||||+. +|+++||||||+|||+..+..+.+.+++++++|.||
T Consensus 107 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tv 186 (248)
T PRK03695 107 LNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186 (248)
T ss_pred HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 3578888999888899999999999999999999997 679999999999999999999999999988779999
Q ss_pred EEEeCCHHHHHh-hccee
Q psy6940 80 IITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 80 iivtH~~~~~~~-~d~v~ 96 (123)
|++||+++++.. ||+++
T Consensus 187 i~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 187 VMSSHDLNHTLRHADRVW 204 (248)
T ss_pred EEEecCHHHHHHhCCEEE
Confidence 999999999887 99887
No 167
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.92 E-value=8e-25 Score=163.27 Aligned_cols=91 Identities=27% Similarity=0.280 Sum_probs=83.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+..++.+.+.+.+++++|.|+|++||+.
T Consensus 106 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~ 185 (201)
T cd03231 106 VEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQD 185 (201)
T ss_pred HHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 45678889998888999999999999999999999999999999999999999999999999999877799999999998
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
..... |++++.
T Consensus 186 ~~~~~~~~~~~~ 197 (201)
T cd03231 186 LGLSEAGARELD 197 (201)
T ss_pred hhhhhccceeEe
Confidence 88877 888863
No 168
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=8.3e-25 Score=163.34 Aligned_cols=90 Identities=26% Similarity=0.223 Sum_probs=82.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.++|++++++|.|||++||++
T Consensus 110 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 189 (204)
T PRK13538 110 LWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189 (204)
T ss_pred HHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh
Confidence 35688889998888999999999999999999999999999999999999999999999999999877789999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. .+|++
T Consensus 190 ~~i~~~~~~~~ 200 (204)
T PRK13538 190 LPVASDKVRKL 200 (204)
T ss_pred hhhccCCceEE
Confidence 99987 44443
No 169
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.8e-25 Score=182.07 Aligned_cols=90 Identities=22% Similarity=0.246 Sum_probs=84.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++....++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|++++++|.|||++||++
T Consensus 115 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~ 194 (491)
T PRK10982 115 TKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM 194 (491)
T ss_pred HHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 35678888888888999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 195 ~~~~~~~d~i~ 205 (491)
T PRK10982 195 EEIFQLCDEIT 205 (491)
T ss_pred HHHHHhCCEEE
Confidence 99988 99988
No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.2e-24 Score=168.71 Aligned_cols=101 Identities=32% Similarity=0.351 Sum_probs=87.4
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.++.++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++++++ |.|||++||++
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 124 SEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred HHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46778888888889999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred HHHHhhcceeeecccccccccCC
Q psy6940 87 EEARQANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 87 ~~~~~~d~v~~~~~~~~~~~~~~ 109 (123)
+++..||+++. +..|+......
T Consensus 204 ~~~~~~d~i~~-l~~G~i~~~g~ 225 (269)
T PRK13648 204 SEAMEADHVIV-MNKGTVYKEGT 225 (269)
T ss_pred hHHhcCCEEEE-EECCEEEEecC
Confidence 99877998873 23444433333
No 171
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1e-24 Score=164.04 Aligned_cols=90 Identities=22% Similarity=0.219 Sum_probs=84.2
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.+..++++.+||+|||||++|||+++.+|++++|||||++||+..++.+.+.+.++.++|.|||++||+++
T Consensus 119 ~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~ 198 (214)
T PRK13543 119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198 (214)
T ss_pred HHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh
Confidence 46778888888889999999999999999999999999999999999999999999999999998878899999999999
Q ss_pred HHHh-hcceee
Q psy6940 88 EARQ-ANTVFG 97 (123)
Q Consensus 88 ~~~~-~d~v~~ 97 (123)
++.. ||+++.
T Consensus 199 ~~~~~~~~i~~ 209 (214)
T PRK13543 199 AAPPVRTRMLT 209 (214)
T ss_pred hhhhhcceEEE
Confidence 9988 999873
No 172
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=8.1e-25 Score=166.17 Aligned_cols=108 Identities=26% Similarity=0.368 Sum_probs=100.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.|++.+.++.+..+||||||+|+.|||||+.+|++++|||||+|+||.+...+.++++.+++.|..|+++.||.
T Consensus 120 l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 120 LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
.+... |||.+. +++|+.-+.+++++...
T Consensus 200 REtL~i~dRaYI-i~~G~vla~G~p~ei~~ 228 (243)
T COG1137 200 RETLDICDRAYI-ISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHhhhheEEE-EecCeEEecCCHHHHhc
Confidence 99888 999985 67888888888887764
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.7e-24 Score=164.40 Aligned_cols=102 Identities=30% Similarity=0.338 Sum_probs=89.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++++++.++.++.+.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++++++ |.|||++||+
T Consensus 111 ~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~ 190 (232)
T cd03300 111 VAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD 190 (232)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 346788889988899999999999999999999999999999999999999999999999999998765 8999999999
Q ss_pred HHHHHh-hcceeeecccccccccCC
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
++++.. ||+++. +..|+......
T Consensus 191 ~~~~~~~~d~i~~-l~~G~~~~~~~ 214 (232)
T cd03300 191 QEEALTMSDRIAV-MNKGKIQQIGT 214 (232)
T ss_pred HHHHHHhcCEEEE-EECCEEEecCC
Confidence 999987 999873 23444444443
No 174
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=8e-25 Score=182.18 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=89.3
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++++++.. ..++++.+|||||||||+||||++.+|+++||||||+|||+.+++.+++++.+++++|.|||++|||+
T Consensus 384 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 384 GSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred HHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 46788888864 67999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred HHHHh-hcceeeecccccccccCCc
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++.. ||+++. +..|+.....+.
T Consensus 464 ~~~~~~~d~v~~-l~~G~i~~~~~~ 487 (500)
T TIGR02633 464 AEVLGLSDRVLV-IGEGKLKGDFVN 487 (500)
T ss_pred HHHHHhCCEEEE-EECCEEEEEEcc
Confidence 99988 999983 335555544433
No 175
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.92 E-value=1.1e-24 Score=166.15 Aligned_cols=90 Identities=31% Similarity=0.431 Sum_probs=83.3
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.+..++++.+||+|||||++||+||+.+|+++||||||+|||+..++.+.+.|.+++++ |.|||++||++
T Consensus 135 ~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 135 DELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred HHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH
Confidence 45678888888889999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 215 ~~~~~~~d~i~~ 226 (236)
T cd03267 215 KDIEALARRVLV 226 (236)
T ss_pred HHHHHhCCEEEE
Confidence 99987 998874
No 176
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=1e-24 Score=168.40 Aligned_cols=91 Identities=24% Similarity=0.360 Sum_probs=84.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.++++.+||||||||++||||++.+|+++||||||+|||+..+..+++.|+++.++ |.|||++||+
T Consensus 101 ~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 101 ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356788889988899999999999999999999999999999999999999999999999999998766 8999999999
Q ss_pred HHHHHh-hcceee
Q psy6940 86 IEEARQ-ANTVFG 97 (123)
Q Consensus 86 ~~~~~~-~d~v~~ 97 (123)
++++.. ||+++.
T Consensus 181 ~~~i~~~~d~i~~ 193 (251)
T PRK09544 181 LHLVMAKTDEVLC 193 (251)
T ss_pred HHHHHHhCCEEEE
Confidence 999987 999873
No 177
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.92 E-value=8.5e-25 Score=182.95 Aligned_cols=105 Identities=23% Similarity=0.251 Sum_probs=90.6
Q ss_pred HHHHHHcCcch-----hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEE
Q psy6940 8 AEILTRTRDFA-----LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIII 81 (123)
Q Consensus 8 ~e~l~~~~l~~-----~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvii 81 (123)
.++++.+++.. +.++++.+|||||||||+|||||+.+|++|||||||+|||+..++.+.+.|++++++ |.|||+
T Consensus 404 ~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~ 483 (520)
T TIGR03269 404 VITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483 (520)
T ss_pred HHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 45788888864 678999999999999999999999999999999999999999999999999998765 899999
Q ss_pred EeCCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 82 TTHYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 82 vtH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+|||++++.. ||+++. +..|+......+.++
T Consensus 484 vsHd~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 484 VSHDMDFVLDVCDRAAL-MRDGKIVKIGDPEEI 515 (520)
T ss_pred EeCCHHHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 9999999988 999873 446666555554443
No 178
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.4e-24 Score=168.70 Aligned_cols=97 Identities=31% Similarity=0.342 Sum_probs=86.1
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++++++.++.++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+++.+++++++ +.|||++||++
T Consensus 124 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 124 DDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred HHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech
Confidence 56788889988999999999999999999999999999999999999999999999999999998766 59999999999
Q ss_pred HHHHhhcceeeeccccccc
Q psy6940 87 EEARQANTVFGGFFAPKLH 105 (123)
Q Consensus 87 ~~~~~~d~v~~~~~~~~~~ 105 (123)
+++..||+++. +..|+..
T Consensus 204 ~~~~~~d~v~~-l~~G~i~ 221 (271)
T PRK13632 204 DEAILADKVIV-FSEGKLI 221 (271)
T ss_pred hHHhhCCEEEE-EECCEEE
Confidence 98866998873 3344443
No 179
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=5.3e-25 Score=168.41 Aligned_cols=105 Identities=25% Similarity=0.326 Sum_probs=85.8
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
++.++...++ +..++.+..||||||||+|||||++.+|++|+||||||+|||.+..++-++|.+++ +.-|||+||
T Consensus 127 e~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVT 205 (253)
T COG1117 127 ESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVT 205 (253)
T ss_pred HHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEe
Confidence 3445555543 45678899999999999999999999999999999999999999999999999998 568999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+|.-+.+ +|+.. =++.|+++.....+.++
T Consensus 206 HnmqQAaRvSD~ta-Ff~~G~LvE~g~T~~iF 236 (253)
T COG1117 206 HNMQQAARVSDYTA-FFYLGELVEFGPTDKIF 236 (253)
T ss_pred CCHHHHHHHhHhhh-hhcccEEEEEcCHHhhh
Confidence 99999988 77765 23456655555555444
No 180
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=8.3e-25 Score=181.92 Aligned_cols=102 Identities=20% Similarity=0.248 Sum_probs=88.0
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++.+++. +..++++.+|||||||||+||||++.+|+++||||||+|||+.+++.+++.+.++.++|.|||++|||+
T Consensus 372 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~ 451 (491)
T PRK10982 372 QWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451 (491)
T ss_pred HHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence 4567778774 467999999999999999999999999999999999999999999999999999987899999999999
Q ss_pred HHHHh-hcceeeecccccccccCCc
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++.. ||+++. +..|+.....+.
T Consensus 452 ~~~~~~~d~v~~-l~~g~i~~~~~~ 475 (491)
T PRK10982 452 PELLGITDRILV-MSNGLVAGIVDT 475 (491)
T ss_pred HHHHhhCCEEEE-EECCEEEEEEcc
Confidence 99988 999972 334554443333
No 181
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.92 E-value=1.8e-24 Score=164.21 Aligned_cols=94 Identities=26% Similarity=0.373 Sum_probs=79.8
Q ss_pred chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 17 FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 17 ~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
....+.++.+|||||||||+||||++.+|+++||||||+|||+..++.+.+.|++++ +|.|||++||+++++..||+++
T Consensus 129 ~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~ 207 (237)
T cd03252 129 DTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRII 207 (237)
T ss_pred cchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEE
Confidence 344567899999999999999999999999999999999999999999999999986 4899999999999986699887
Q ss_pred eecccccccccCCchh
Q psy6940 97 GGFFAPKLHLSLNESE 112 (123)
Q Consensus 97 ~~~~~~~~~~~~~~~~ 112 (123)
. +..|+.....+..+
T Consensus 208 ~-l~~G~i~~~~~~~~ 222 (237)
T cd03252 208 V-MEKGRIVEQGSHDE 222 (237)
T ss_pred E-EECCEEEEEcCHHH
Confidence 3 44555554444433
No 182
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.2e-24 Score=165.02 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=84.9
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++. +|.|||++|
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~s 202 (250)
T PRK14247 124 RWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-KDMTIVLVT 202 (250)
T ss_pred HHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 4567777764 35788999999999999999999999999999999999999999999999999986 489999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCc
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
|+++++.. ||+++. +-.|+.....+.
T Consensus 203 H~~~~~~~~~d~i~~-l~~G~i~~~g~~ 229 (250)
T PRK14247 203 HFPQQAARISDYVAF-LYKGQIVEWGPT 229 (250)
T ss_pred CCHHHHHHhcCEEEE-EECCeEEEECCH
Confidence 99999987 998873 234444443333
No 183
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.92 E-value=1.4e-24 Score=180.75 Aligned_cols=90 Identities=26% Similarity=0.307 Sum_probs=82.8
Q ss_pred HHHHHHHcCcchhc-CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALR-KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~-~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+++.+.. ++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|++++++|.|||++||+
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 121 AKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred HHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 35678888887654 67899999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 201 ~~~~~~~~d~i~ 212 (500)
T TIGR02633 201 LNEVKAVCDTIC 212 (500)
T ss_pred HHHHHHhCCEEE
Confidence 999988 99988
No 184
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2.6e-24 Score=163.93 Aligned_cols=89 Identities=33% Similarity=0.391 Sum_probs=83.7
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++.+++.+..++++.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.++++..+ |.|||++||++
T Consensus 111 ~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~ 190 (235)
T cd03299 111 LEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190 (235)
T ss_pred HHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46788889988899999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
.++.. ||+++
T Consensus 191 ~~~~~~~d~i~ 201 (235)
T cd03299 191 EEAWALADKVA 201 (235)
T ss_pred HHHHHhCCEEE
Confidence 99987 99987
No 185
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.7e-24 Score=162.12 Aligned_cols=90 Identities=28% Similarity=0.310 Sum_probs=83.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++++||||||||++||||++.+|+++||||||+|||+..++.+.+.|.+++++|.|||++||++
T Consensus 108 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 187 (207)
T PRK13539 108 IAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP 187 (207)
T ss_pred HHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46788889988888999999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHhhcceee
Q psy6940 87 EEARQANTVFG 97 (123)
Q Consensus 87 ~~~~~~d~v~~ 97 (123)
+++.. |+++.
T Consensus 188 ~~~~~-~~~~~ 197 (207)
T PRK13539 188 LGLPG-ARELD 197 (207)
T ss_pred hhhcc-CcEEe
Confidence 99887 77763
No 186
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.92 E-value=2.4e-24 Score=167.37 Aligned_cols=106 Identities=27% Similarity=0.325 Sum_probs=90.5
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. ...++++..||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|++++++ |.|||++||
T Consensus 131 ~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH 210 (268)
T PRK10419 131 ASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210 (268)
T ss_pred HHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEEC
Confidence 45678888886 5789999999999999999999999999999999999999999999999999998765 899999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++++.. ||+++. +..|+........++
T Consensus 211 ~~~~i~~~~d~i~~-l~~G~i~~~g~~~~~ 239 (268)
T PRK10419 211 DLRLVERFCQRVMV-MDNGQIVETQPVGDK 239 (268)
T ss_pred CHHHHHHhCCEEEE-EECCEEeeeCChhhc
Confidence 9999987 998873 334555544444443
No 187
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=3.7e-24 Score=158.63 Aligned_cols=89 Identities=26% Similarity=0.331 Sum_probs=81.9
Q ss_pred HHHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 8 AEILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHS--PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 8 ~e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~--p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.++++++++... .++++.+||+|||||++||||++.+ |+++||||||++||+..++.+.+.++++++.|.|||++||
T Consensus 68 ~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 357888988764 7889999999999999999999999 9999999999999999999999999998767999999999
Q ss_pred CHHHHHhhccee
Q psy6940 85 YIEEARQANTVF 96 (123)
Q Consensus 85 ~~~~~~~~d~v~ 96 (123)
+++++..||+++
T Consensus 148 ~~~~~~~~d~i~ 159 (176)
T cd03238 148 NLDVLSSADWII 159 (176)
T ss_pred CHHHHHhCCEEE
Confidence 999875599987
No 188
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1e-24 Score=170.59 Aligned_cols=108 Identities=24% Similarity=0.319 Sum_probs=98.0
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+|+. +..+++|++|||||+||++|||||+.+|+++++|||+|+||...+.++.+++.+++++ |.|.+++||
T Consensus 89 v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsH 168 (268)
T COG4608 89 VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168 (268)
T ss_pred HHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEE
Confidence 45778888875 4889999999999999999999999999999999999999999999999999999876 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
|+..+.. ||++.. ||.|+.+.....++++.
T Consensus 169 DL~vv~~isdri~V-My~G~iVE~g~~~~~~~ 199 (268)
T COG4608 169 DLSVVRYISDRIAV-MYLGKIVEIGPTEEVFS 199 (268)
T ss_pred EHHhhhhhcccEEE-EecCceeEecCHHHHhh
Confidence 9999999 998764 88888888888777764
No 189
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-24 Score=180.88 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=84.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++....++++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||++
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 121 AREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM 200 (501)
T ss_pred HHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34678888988778999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 201 ~~~~~~~d~i~ 211 (501)
T PRK11288 201 EEIFALCDAIT 211 (501)
T ss_pred HHHHHhCCEEE
Confidence 99988 99988
No 190
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.4e-24 Score=164.30 Aligned_cols=102 Identities=27% Similarity=0.374 Sum_probs=85.3
Q ss_pred HHHHHHcCcch----hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA----LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~----~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.+ ..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|+++. +|+|||++|
T Consensus 127 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiis 205 (251)
T PRK14244 127 EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVT 205 (251)
T ss_pred HHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 35678888753 4577899999999999999999999999999999999999999999999999985 489999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCch
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
|+++++.. ||+++. +-.|+........
T Consensus 206 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~ 233 (251)
T PRK14244 206 HSMKQAKKVSDRVAF-FQSGRIVEYNTTQ 233 (251)
T ss_pred CCHHHHHhhcCEEEE-EECCEEEEeCCHH
Confidence 99999987 999873 3344544443333
No 191
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=3.2e-24 Score=165.52 Aligned_cols=103 Identities=25% Similarity=0.307 Sum_probs=86.4
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.|++++ ++.|||++|
T Consensus 134 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~s 212 (260)
T PRK10744 134 EWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVT 212 (260)
T ss_pred HHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 4567777763 45788999999999999999999999999999999999999999999999999986 478999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +..|+.......++
T Consensus 213 H~~~~~~~~~d~i~~-l~~G~i~~~g~~~~ 241 (260)
T PRK10744 213 HNMQQAARCSDYTAF-MYLGELIEFGNTDT 241 (260)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 99999987 999873 33455544444433
No 192
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.1e-24 Score=163.60 Aligned_cols=104 Identities=30% Similarity=0.386 Sum_probs=87.8
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++.. |.|||++|
T Consensus 120 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~t 198 (246)
T PRK14269 120 VDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVT 198 (246)
T ss_pred HHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 4567888874 456888999999999999999999999999999999999999999999999999864 89999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++. +..|+........++
T Consensus 199 H~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 199 HNMQQGKRVADYTAF-FHLGELIEFGESKEF 228 (246)
T ss_pred cCHHHHHhhCcEEEE-EECCEEEEECCHHHH
Confidence 99999987 998874 445565554444443
No 193
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=163.41 Aligned_cols=102 Identities=27% Similarity=0.298 Sum_probs=84.3
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. +..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||
T Consensus 127 ~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH 205 (252)
T PRK14239 127 KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTR 205 (252)
T ss_pred HHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEEC
Confidence 356666652 456889999999999999999999999999999999999999999999999999864 689999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++++.. ||+++. +-.|+........+
T Consensus 206 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~ 233 (252)
T PRK14239 206 SMQQASRISDRTGF-FLDGDLIEYNDTKQ 233 (252)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 9999887 999873 23444444444433
No 194
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=4.2e-24 Score=162.71 Aligned_cols=90 Identities=24% Similarity=0.299 Sum_probs=81.4
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.++++.+++.. ..++++.+||||||||++||||++.+| +++||||||+|||+..+..+.+.+++++++|.|||++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 35677788776 579999999999999999999999998 599999999999999999999999998777999999999
Q ss_pred CHHHHHhhcceee
Q psy6940 85 YIEEARQANTVFG 97 (123)
Q Consensus 85 ~~~~~~~~d~v~~ 97 (123)
+++++..||+++.
T Consensus 198 ~~~~~~~~d~i~~ 210 (226)
T cd03270 198 DEDTIRAADHVID 210 (226)
T ss_pred CHHHHHhCCEEEE
Confidence 9998755999973
No 195
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.7e-24 Score=161.02 Aligned_cols=90 Identities=34% Similarity=0.516 Sum_probs=85.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+.++++++.+.+++|+.|-.|||||+|||+|||||+++|+++++||||++|||+-..++.++|+++...|.|=+++||..
T Consensus 122 a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev 201 (242)
T COG4161 122 AEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh
Confidence 45678889999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+.+.. +.+|+
T Consensus 202 ~va~k~as~vv 212 (242)
T COG4161 202 EVARKTASRVV 212 (242)
T ss_pred hHHHhhhhheE
Confidence 99988 88887
No 196
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.6e-24 Score=167.47 Aligned_cols=105 Identities=24% Similarity=0.313 Sum_probs=88.1
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. +..++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|++++++ .|||++|
T Consensus 158 ~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~t 236 (285)
T PRK14254 158 EESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVT 236 (285)
T ss_pred HHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 4567777763 4678899999999999999999999999999999999999999999999999998754 7999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++.-+-.|+........++
T Consensus 237 H~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 237 HNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred CCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 99999988 9997644446666555444443
No 197
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=163.71 Aligned_cols=103 Identities=26% Similarity=0.298 Sum_probs=85.7
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||||||||++||||++.+|+++||||||+|||+..+..+.+.|+++.+ +.|||++|
T Consensus 127 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~s 205 (253)
T PRK14267 127 EWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVT 205 (253)
T ss_pred HHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEE
Confidence 4566777763 456889999999999999999999999999999999999999999999999999864 68999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +-.|+........+
T Consensus 206 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 234 (253)
T PRK14267 206 HSPAQAARVSDYVAF-LYLGKLIEVGPTRK 234 (253)
T ss_pred CCHHHHHhhCCEEEE-EECCEEEEeCCHHH
Confidence 99999987 999873 33454444444333
No 198
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.91 E-value=4.4e-24 Score=162.81 Aligned_cols=105 Identities=29% Similarity=0.367 Sum_probs=90.8
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.++++++++.++.++++.+||+||+||++||||++.+|++++|||||+|||+.+++.+.+.+.+++++ |+|||++||++
T Consensus 112 ~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 112 EELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56788888888889999999999999999999999999999999999999999999999999998766 89999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++.. ||+++. +-.|+.......+++
T Consensus 192 ~~~~~~~d~i~~-l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 192 EEAMEVADRIVV-MSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHhhcCEEEE-EECCEEEEecCHHHH
Confidence 99887 998873 335555444444433
No 199
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=3.2e-24 Score=165.82 Aligned_cols=106 Identities=25% Similarity=0.282 Sum_probs=94.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
+.++++++++.+.++.+.++||+|||+|+.|||||+.+|++|+||||.+|+.+.....+.+.|++++++ |.||++|+||
T Consensus 130 A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd 209 (250)
T COG0411 130 ARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209 (250)
T ss_pred HHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 457889999999999999999999999999999999999999999999999999999999999999975 7999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+.+.. ||||+. +-.|+.-+..++.+.
T Consensus 210 M~~Vm~l~dri~V-l~~G~~IAeG~P~eV 237 (250)
T COG0411 210 MKLVMGLADRIVV-LNYGEVIAEGTPEEV 237 (250)
T ss_pred cHHHhhhccEEEe-ccCCcCcccCCHHHH
Confidence 999999 999985 444444445555443
No 200
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=4.9e-24 Score=166.58 Aligned_cols=100 Identities=22% Similarity=0.232 Sum_probs=87.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-C
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLL---------HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-G 76 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~---------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g 76 (123)
..++++.+++....++++.+|||||||||+|||||+ .+|+++||||||+|||+..++.+.+.++++.++ |
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 205 (272)
T PRK13547 126 AWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205 (272)
T ss_pred HHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 346788889988889999999999999999999999 599999999999999999999999999998776 8
Q ss_pred cEEEEEeCCHHHHHh-hcceeeeccccccccc
Q psy6940 77 QTIIITTHYIEEARQ-ANTVFGGFFAPKLHLS 107 (123)
Q Consensus 77 ~tviivtH~~~~~~~-~d~v~~~~~~~~~~~~ 107 (123)
.|||++||+++++.. ||+++. +-.|+....
T Consensus 206 ~tviiisH~~~~~~~~~d~i~~-l~~G~i~~~ 236 (272)
T PRK13547 206 LGVLAIVHDPNLAARHADRIAM-LADGAIVAH 236 (272)
T ss_pred CEEEEEECCHHHHHHhCCEEEE-EECCeEEEe
Confidence 999999999999987 999873 234444333
No 201
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.91 E-value=9.3e-24 Score=161.03 Aligned_cols=102 Identities=26% Similarity=0.240 Sum_probs=84.3
Q ss_pred HHHHHcCc-chhcCCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 9 EILTRTRD-FALRKLLPN-WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 9 e~l~~~~l-~~~~~~~~~-~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
++++.+++ .++.++++. +|||||||||+||||++.+|+++||||||+|||+.+++.+.+.++++++.|+|||++||++
T Consensus 126 ~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 126 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred HHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45566666 345667775 8999999999999999999999999999999999999999999999887789999999999
Q ss_pred HHHHh--hcceeeecccccccccCCch
Q psy6940 87 EEARQ--ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 87 ~~~~~--~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++.. ||+++. +..|+.....+..
T Consensus 206 ~~~~~~~~d~i~~-l~~g~i~~~g~~~ 231 (248)
T PRK09580 206 RILDYIKPDYVHV-LYQGRIVKSGDFT 231 (248)
T ss_pred HHHHhhhCCEEEE-EECCeEEEeCCHH
Confidence 99876 677652 4566665554444
No 202
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.91 E-value=4.6e-24 Score=161.58 Aligned_cols=91 Identities=23% Similarity=0.226 Sum_probs=83.1
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+++. ...++++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+.+.++.++ |.|||++||
T Consensus 117 ~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh 196 (225)
T PRK10247 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH 196 (225)
T ss_pred HHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 35678888885 5789999999999999999999999999999999999999999999999999998764 899999999
Q ss_pred CHHHHHhhcceee
Q psy6940 85 YIEEARQANTVFG 97 (123)
Q Consensus 85 ~~~~~~~~d~v~~ 97 (123)
+++++..||+++.
T Consensus 197 ~~~~~~~~d~i~~ 209 (225)
T PRK10247 197 DKDEINHADKVIT 209 (225)
T ss_pred ChHHHHhCCEEEE
Confidence 9999866999883
No 203
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.7e-24 Score=163.39 Aligned_cols=105 Identities=24% Similarity=0.278 Sum_probs=87.7
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|++++ ++.|||++|
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tviivs 204 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVT 204 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 4466777763 46788999999999999999999999999999999999999999999999999986 468999999
Q ss_pred CCHHHHHh-hcceeeec-----ccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGF-----FAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~-----~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++.-. -.|+........++
T Consensus 205 H~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 205 HNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred cCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 99999987 99987422 14666555555444
No 204
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.5e-24 Score=164.70 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=85.3
Q ss_pred HHHHHHcCcch----hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA----LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~----~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.. ..++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|+++++ +.|||++|
T Consensus 141 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivt 219 (267)
T PRK14235 141 ETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVT 219 (267)
T ss_pred HHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 45677778743 46788999999999999999999999999999999999999999999999999865 68999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCch
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
|+++++.. ||+++. +-.|+........
T Consensus 220 H~~~~~~~~~d~v~~-l~~G~i~~~g~~~ 247 (267)
T PRK14235 220 HSMQQAARVSQRTAF-FHLGNLVEVGDTE 247 (267)
T ss_pred cCHHHHHhhCCEEEE-EECCEEEEeCCHH
Confidence 99999987 998873 2344444444333
No 205
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.9e-24 Score=164.67 Aligned_cols=100 Identities=29% Similarity=0.347 Sum_probs=83.3
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. ...++++.+||||||||++|||||+.+|+++||||||+|||+.+++.+.+.++++++ +.|||++||
T Consensus 143 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH 221 (268)
T PRK14248 143 ESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTH 221 (268)
T ss_pred HHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEe
Confidence 455666653 456889999999999999999999999999999999999999999999999999864 689999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCc
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++++.. ||+++. +-.|+.......
T Consensus 222 ~~~~~~~~~d~v~~-l~~G~i~~~~~~ 247 (268)
T PRK14248 222 NMQQALRVSDRTAF-FLNGDLVEYDQT 247 (268)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCH
Confidence 9999987 999873 234444444333
No 206
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.91 E-value=7.1e-24 Score=162.23 Aligned_cols=103 Identities=26% Similarity=0.217 Sum_probs=86.8
Q ss_pred HHHHHHcCcc-hhcCCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 8 AEILTRTRDF-ALRKLLPN-WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~-~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.++++.+++. ...++++. .|||||||||+||||++.+|+++||||||+|||+.+++.+.+.|+++.++|.|||++||+
T Consensus 131 ~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~ 210 (252)
T CHL00131 131 NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210 (252)
T ss_pred HHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4567888886 46788887 599999999999999999999999999999999999999999999988779999999999
Q ss_pred HHHHHh--hcceeeecccccccccCCch
Q psy6940 86 IEEARQ--ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 86 ~~~~~~--~d~v~~~~~~~~~~~~~~~~ 111 (123)
++++.. ||+++. +..|+.....+++
T Consensus 211 ~~~~~~~~~d~i~~-l~~G~i~~~~~~~ 237 (252)
T CHL00131 211 QRLLDYIKPDYVHV-MQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHhhhCCEEEE-EeCCEEEEecChh
Confidence 999875 687762 3455555554444
No 207
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=6.7e-24 Score=163.50 Aligned_cols=104 Identities=26% Similarity=0.359 Sum_probs=86.7
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. +..++++.+||||||||++|||+++.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++|
T Consensus 133 ~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivt 211 (259)
T PRK14274 133 EKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVT 211 (259)
T ss_pred HHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEE
Confidence 3456677763 356889999999999999999999999999999999999999999999999999864 78999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++. +-.|+.....++.++
T Consensus 212 H~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 212 HNMQQAARVSDQTAF-FYMGELVECNDTNKM 241 (259)
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 99999987 999873 345555555454443
No 208
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=6.2e-24 Score=160.78 Aligned_cols=97 Identities=27% Similarity=0.297 Sum_probs=82.2
Q ss_pred CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 15 RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 15 ~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
++....+.++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.+.|+++. +|.|||++||+++++..||+
T Consensus 127 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~ 205 (234)
T cd03251 127 GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADR 205 (234)
T ss_pred CcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCE
Confidence 44455678899999999999999999999999999999999999999999999999986 48999999999999877998
Q ss_pred eeeecccccccccCCchhh
Q psy6940 95 VFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 95 v~~~~~~~~~~~~~~~~~~ 113 (123)
++. +-.|+.....+..++
T Consensus 206 v~~-l~~G~i~~~~~~~~~ 223 (234)
T cd03251 206 IVV-LEDGKIVERGTHEEL 223 (234)
T ss_pred EEE-ecCCeEeeeCCHHHH
Confidence 873 445665555444443
No 209
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.1e-24 Score=162.21 Aligned_cols=103 Identities=26% Similarity=0.296 Sum_probs=85.9
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++|
T Consensus 125 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivs 203 (251)
T PRK14270 125 EWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVT 203 (251)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEE
Confidence 3567777763 457889999999999999999999999999999999999999999999999999875 58999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +.+|+........+
T Consensus 204 H~~~~~~~~~d~v~~-l~~G~i~~~~~~~~ 232 (251)
T PRK14270 204 HNMQQASRVSDYTAF-FLMGDLIEFNKTEK 232 (251)
T ss_pred cCHHHHHHhcCEEEE-EECCeEEEeCCHHH
Confidence 99999988 999873 34444444444433
No 210
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.6e-24 Score=162.44 Aligned_cols=104 Identities=27% Similarity=0.341 Sum_probs=87.1
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. +..+.++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++|
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivs 204 (252)
T PRK14256 126 ESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVT 204 (252)
T ss_pred HHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEE
Confidence 4566677764 356788999999999999999999999999999999999999999999999999875 68999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++. +..|+........++
T Consensus 205 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 205 HNMQQAARVSDYTAF-FYMGDLVECGETKKI 234 (252)
T ss_pred CCHHHHHhhCCEEEE-EECCEEEEeCCHHHH
Confidence 99999987 999873 345555555554444
No 211
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=3.4e-24 Score=160.08 Aligned_cols=90 Identities=23% Similarity=0.315 Sum_probs=85.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
+.+.++++|+....+.+|.+|||||||||+||||++..|+++|.||||.+||....+++.+++-.++++ |.|.++||||
T Consensus 127 A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD 206 (228)
T COG4181 127 AKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD 206 (228)
T ss_pred HHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC
Confidence 567899999999999999999999999999999999999999999999999999999999999998766 9999999999
Q ss_pred HHHHHhhccee
Q psy6940 86 IEEARQANTVF 96 (123)
Q Consensus 86 ~~~~~~~d~v~ 96 (123)
+..+.+|+|.+
T Consensus 207 ~~LA~Rc~R~~ 217 (228)
T COG4181 207 PQLAARCDRQL 217 (228)
T ss_pred HHHHHhhhhee
Confidence 99999999988
No 212
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.91 E-value=8.1e-24 Score=161.94 Aligned_cols=101 Identities=26% Similarity=0.326 Sum_probs=83.8
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. ...++++.+||||||||++||||++.+|+++||||||+|||+.++..+.+.++++. ++.|||++||
T Consensus 125 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH 203 (250)
T PRK14240 125 KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTH 203 (250)
T ss_pred HHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEe
Confidence 445666653 45688999999999999999999999999999999999999999999999999985 4789999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCch
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++.+.. ||+++. +..|+........
T Consensus 204 ~~~~~~~~~d~v~~-l~~G~i~~~~~~~ 230 (250)
T PRK14240 204 NMQQASRISDKTAF-FLNGEIVEFGDTV 230 (250)
T ss_pred CHHHHHhhCCEEEE-EECCEEEEeCCHH
Confidence 9999988 998873 3345554444433
No 213
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.91 E-value=4.3e-24 Score=160.36 Aligned_cols=89 Identities=26% Similarity=0.294 Sum_probs=77.9
Q ss_pred HHHHHHcCcchhcCCCC-----------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy6940 8 AEILTRTRDFALRKLLP-----------NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~-----------~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g 76 (123)
.++++.+++.++.++.| .+||||||||++||||++.+|+++||||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~- 189 (220)
T cd03245 111 LRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD- 189 (220)
T ss_pred HHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-
Confidence 45677777777666654 699999999999999999999999999999999999999999999998754
Q ss_pred cEEEEEeCCHHHHHhhcceee
Q psy6940 77 QTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 77 ~tviivtH~~~~~~~~d~v~~ 97 (123)
.|||++||+++++..||+++.
T Consensus 190 ~tii~~sH~~~~~~~~d~v~~ 210 (220)
T cd03245 190 KTLIIITHRPSLLDLVDRIIV 210 (220)
T ss_pred CEEEEEeCCHHHHHhCCEEEE
Confidence 899999999998744999873
No 214
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=7.2e-24 Score=162.30 Aligned_cols=104 Identities=28% Similarity=0.333 Sum_probs=86.8
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.++++. ++.|||++|
T Consensus 125 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiiiis 203 (251)
T PRK14251 125 EESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-HQYTFIMVT 203 (251)
T ss_pred HHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-cCCeEEEEE
Confidence 3556777763 45688999999999999999999999999999999999999999999999999985 468999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++. +..|+........++
T Consensus 204 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 204 HNLQQAGRISDQTAF-LMNGDLIEAGPTEEM 233 (251)
T ss_pred CCHHHHHhhcCEEEE-EECCEEEEeCCHHHH
Confidence 99999987 998873 445555555444443
No 215
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.4e-24 Score=161.83 Aligned_cols=101 Identities=27% Similarity=0.278 Sum_probs=84.5
Q ss_pred HHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 10 ILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 10 ~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+++.+++. .+.++++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.++|+++. ++.|||++||+
T Consensus 127 ~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~ 205 (251)
T PRK14249 127 SLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHN 205 (251)
T ss_pred HHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCC
Confidence 45555643 45788999999999999999999999999999999999999999999999999885 58999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++++.. ||+++. +..|+........+
T Consensus 206 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 232 (251)
T PRK14249 206 MQQAARASDWTGF-LLTGDLVEYGRTGE 232 (251)
T ss_pred HHHHHhhCCEEEE-EeCCeEEEeCCHHH
Confidence 999988 899873 34555544444443
No 216
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=5.8e-24 Score=160.39 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=80.0
Q ss_pred HHHHHHc--CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 8 AEILTRT--RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~--~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.++++.+ ++....+.++.+|||||||||+||||++.+|+++||||||+|||+..++.+.+.++++++ +.|||++||+
T Consensus 130 ~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~ 208 (226)
T cd03248 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHR 208 (226)
T ss_pred HHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 3556666 667778889999999999999999999999999999999999999999999999999865 6899999999
Q ss_pred HHHHHhhcceee
Q psy6940 86 IEEARQANTVFG 97 (123)
Q Consensus 86 ~~~~~~~d~v~~ 97 (123)
++++..||+++.
T Consensus 209 ~~~~~~~d~i~~ 220 (226)
T cd03248 209 LSTVERADQILV 220 (226)
T ss_pred HHHHHhCCEEEE
Confidence 999866999873
No 217
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.91 E-value=5.7e-24 Score=160.24 Aligned_cols=91 Identities=32% Similarity=0.390 Sum_probs=83.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++++++.+..++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|+++.+ .|+|||++||+
T Consensus 122 ~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~ 201 (220)
T TIGR02982 122 ARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD 201 (220)
T ss_pred HHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46788899998889999999999999999999999999999999999999999999999999999876 48999999999
Q ss_pred HHHHHhhcceee
Q psy6940 86 IEEARQANTVFG 97 (123)
Q Consensus 86 ~~~~~~~d~v~~ 97 (123)
++....||+++.
T Consensus 202 ~~~~~~~d~v~~ 213 (220)
T TIGR02982 202 NRILDVADRIVH 213 (220)
T ss_pred HHHHhhCCEEEE
Confidence 986544999873
No 218
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=9.8e-24 Score=164.40 Aligned_cols=104 Identities=15% Similarity=0.159 Sum_probs=89.3
Q ss_pred HHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 9 e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
++++.+++.+..++++.+||+||+||++||+|++.+|+++||||||+|||+..++.+.+.+.+++++|.|||++||++++
T Consensus 126 ~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~ 205 (264)
T PRK13546 126 KIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQ 205 (264)
T ss_pred HHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 45667788888899999999999999999999999999999999999999999999999999987779999999999999
Q ss_pred HHh-hcceeeecccccccccCCchhh
Q psy6940 89 ARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 89 ~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+.. ||+++. +-.|+.....+.+++
T Consensus 206 i~~~~d~i~~-l~~G~i~~~g~~~~~ 230 (264)
T PRK13546 206 VRQFCTKIAW-IEGGKLKDYGELDDV 230 (264)
T ss_pred HHHHcCEEEE-EECCEEEEeCCHHHH
Confidence 988 998862 345555554444443
No 219
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=9.4e-24 Score=164.12 Aligned_cols=105 Identities=23% Similarity=0.231 Sum_probs=86.8
Q ss_pred HHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++ ....++++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.++|++++ ++.|||++||
T Consensus 133 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiiivtH 211 (269)
T PRK14259 133 RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTH 211 (269)
T ss_pred HHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeC
Confidence 45666665 345788999999999999999999999999999999999999999999999999985 4789999999
Q ss_pred CHHHHHh-hcceeeec-------c---cccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGF-------F---APKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~-------~---~~~~~~~~~~~~~~ 114 (123)
+++++.. ||+++.-- + .|+...+..+.+++
T Consensus 212 ~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 212 NMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred CHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 9999988 99987321 1 24456666665554
No 220
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-23 Score=162.77 Aligned_cols=106 Identities=21% Similarity=0.263 Sum_probs=88.9
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEE
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIIT 82 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviiv 82 (123)
.++++.+++. +..++++.+||||||||++|||+|+.+|+++||||||+|||+..+..+.+.+++++. +|.|||++
T Consensus 128 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiiv 207 (261)
T PRK14258 128 ESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIV 207 (261)
T ss_pred HHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456677653 356889999999999999999999999999999999999999999999999999865 48999999
Q ss_pred eCCHHHHHh-hcceeeeccc-----ccccccCCchhhh
Q psy6940 83 THYIEEARQ-ANTVFGGFFA-----PKLHLSLNESELL 114 (123)
Q Consensus 83 tH~~~~~~~-~d~v~~~~~~-----~~~~~~~~~~~~~ 114 (123)
||+++++.. ||+++. +-. |+......+.++.
T Consensus 208 sH~~~~i~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 208 SHNLHQVSRLSDFTAF-FKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred ECCHHHHHHhcCEEEE-EccCCCcCceEEEeCCHHHHH
Confidence 999999988 999884 233 6766665655543
No 221
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.91 E-value=7.1e-24 Score=160.31 Aligned_cols=88 Identities=34% Similarity=0.428 Sum_probs=81.0
Q ss_pred HHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH-HH
Q psy6940 10 ILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI-EE 88 (123)
Q Consensus 10 ~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~-~~ 88 (123)
+++.+++....++++.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+++++++|.|||++||++ ++
T Consensus 127 ~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~ 206 (226)
T cd03234 127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSD 206 (226)
T ss_pred HHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Confidence 67777888888899999999999999999999999999999999999999999999999999877789999999998 57
Q ss_pred HHh-hcceee
Q psy6940 89 ARQ-ANTVFG 97 (123)
Q Consensus 89 ~~~-~d~v~~ 97 (123)
+.. ||+++.
T Consensus 207 ~~~~~d~i~~ 216 (226)
T cd03234 207 LFRLFDRILL 216 (226)
T ss_pred HHHhCCEEEE
Confidence 777 998873
No 222
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.91 E-value=5.3e-24 Score=158.56 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=82.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++....++++.+||+||+||++||||++.+|+++||||||+|||+.+++.+.+.|++++++|.|||++||+.
T Consensus 108 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 108 ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQD 187 (200)
T ss_pred HHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 46788888887778899999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHhhccee
Q psy6940 87 EEARQANTVF 96 (123)
Q Consensus 87 ~~~~~~d~v~ 96 (123)
..+..||.-+
T Consensus 188 ~~~~~~d~~~ 197 (200)
T PRK13540 188 LPLNKADYEE 197 (200)
T ss_pred hhccccchhh
Confidence 9987787643
No 223
>PRK13409 putative ATPase RIL; Provisional
Probab=99.91 E-value=5.5e-24 Score=181.73 Aligned_cols=90 Identities=23% Similarity=0.279 Sum_probs=85.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||
T Consensus 434 ~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD 513 (590)
T PRK13409 434 KSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513 (590)
T ss_pred HHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 367889999998999999999999999999999999999999999999999999999999999999765 8999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 514 ~~~~~~~aDrvi 525 (590)
T PRK13409 514 IYMIDYISDRLM 525 (590)
T ss_pred HHHHHHhCCEEE
Confidence 999988 99988
No 224
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.1e-23 Score=158.94 Aligned_cols=92 Identities=24% Similarity=0.315 Sum_probs=77.7
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeee
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGG 98 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~ 98 (123)
..++++.+||+||||||+|||||+.+|+++||||||+|||+..++.+.+.+.++. +|.|||++||+++++..||+++.
T Consensus 132 ~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~- 209 (229)
T cd03254 132 VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILV- 209 (229)
T ss_pred HhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEE-
Confidence 3456689999999999999999999999999999999999999999999999986 58999999999999866998873
Q ss_pred cccccccccCCchh
Q psy6940 99 FFAPKLHLSLNESE 112 (123)
Q Consensus 99 ~~~~~~~~~~~~~~ 112 (123)
+-.|+.....+.++
T Consensus 210 l~~g~~~~~~~~~~ 223 (229)
T cd03254 210 LDDGKIIEEGTHDE 223 (229)
T ss_pred EeCCeEEEeCCHHH
Confidence 34555554444333
No 225
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.5e-23 Score=161.71 Aligned_cols=106 Identities=22% Similarity=0.193 Sum_probs=89.0
Q ss_pred HHHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++ .+..++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++|
T Consensus 128 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~t 206 (259)
T PRK14260 128 ESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVT 206 (259)
T ss_pred HHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 345666666 3467889999999999999999999999999999999999999999999999999864 68999999
Q ss_pred CCHHHHHh-hcceeeec----ccccccccCCchhhh
Q psy6940 84 HYIEEARQ-ANTVFGGF----FAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~----~~~~~~~~~~~~~~~ 114 (123)
|+++++.. ||+++.-. ..|+......+.+++
T Consensus 207 H~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 207 HNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred CCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 99999988 99987432 147776666666553
No 226
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.91 E-value=1.4e-23 Score=159.37 Aligned_cols=92 Identities=28% Similarity=0.373 Sum_probs=78.4
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeee
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGG 98 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~ 98 (123)
..++++.+|||||||||+||||++.+|+++||||||+|||+..++.+.+.|++++ +|.|||++||+++++..||+++.
T Consensus 132 ~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~- 209 (238)
T cd03249 132 LVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAV- 209 (238)
T ss_pred eeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEE-
Confidence 4567789999999999999999999999999999999999999999999999987 78999999999999866999873
Q ss_pred cccccccccCCchh
Q psy6940 99 FFAPKLHLSLNESE 112 (123)
Q Consensus 99 ~~~~~~~~~~~~~~ 112 (123)
+-.|+.....+..+
T Consensus 210 l~~G~i~~~~~~~~ 223 (238)
T cd03249 210 LQNGQVVEQGTHDE 223 (238)
T ss_pred EECCEEEEeCCHHH
Confidence 33455444444333
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=160.51 Aligned_cols=102 Identities=31% Similarity=0.380 Sum_probs=84.9
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. ...++++.+||+|||||++||||++.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH 203 (250)
T PRK14262 125 ESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTH 203 (250)
T ss_pred HHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeC
Confidence 456666653 357889999999999999999999999999999999999999999999999999864 789999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.+.. ||+++. +..|+........+
T Consensus 204 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~ 231 (250)
T PRK14262 204 NIGQAIRIADYIAF-MYRGELIEYGPTRE 231 (250)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEecCHHH
Confidence 9999887 999873 33455544444443
No 228
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=164.60 Aligned_cols=101 Identities=27% Similarity=0.318 Sum_probs=84.4
Q ss_pred HHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++ .+..++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|++++. +.|||++||
T Consensus 161 ~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH 239 (286)
T PRK14275 161 KSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTH 239 (286)
T ss_pred HHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 45666665 3566889999999999999999999999999999999999999999999999999864 689999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCch
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++++.. ||+++. +..|+........
T Consensus 240 ~~~~~~~~~d~i~~-L~~G~i~~~g~~~ 266 (286)
T PRK14275 240 NMQQASRVSDYTMF-FYEGVLVEHAPTA 266 (286)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCHH
Confidence 9999987 999873 3345544444433
No 229
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=162.04 Aligned_cols=104 Identities=24% Similarity=0.227 Sum_probs=88.0
Q ss_pred HHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 10 ILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 10 ~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+++.+++. ...++++.+||||||||++||||++.+|+++||||||+|||+..+..+.+.|.++.+ +.|||++||+
T Consensus 131 ~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~ 209 (264)
T PRK14243 131 SLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHN 209 (264)
T ss_pred HHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecC
Confidence 45556653 356889999999999999999999999999999999999999999999999999875 5899999999
Q ss_pred HHHHHh-hcceeee--------cccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGG--------FFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~--------~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++.- ...|+........++.
T Consensus 210 ~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 210 MQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred HHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 999988 9998742 2367777776666654
No 230
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=165.48 Aligned_cols=105 Identities=21% Similarity=0.280 Sum_probs=88.0
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++++ +.|||++|
T Consensus 178 ~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivt 256 (305)
T PRK14264 178 ERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVT 256 (305)
T ss_pred HHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEE
Confidence 3456666653 456889999999999999999999999999999999999999999999999999876 48999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++.-+..|+........++
T Consensus 257 H~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 257 HNMQQAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred cCHHHHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 99999988 9997654556666655555443
No 231
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=162.87 Aligned_cols=105 Identities=26% Similarity=0.234 Sum_probs=88.9
Q ss_pred HHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++ .+..++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|.++++ +.|||++||
T Consensus 140 ~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH 218 (274)
T PRK14265 140 DSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTH 218 (274)
T ss_pred HHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 34556664 2456889999999999999999999999999999999999999999999999999864 689999999
Q ss_pred CHHHHHh-hcceeeec--------ccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGF--------FAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~--------~~~~~~~~~~~~~~~ 114 (123)
+++++.. ||+++.-. -.|+.+....+.++.
T Consensus 219 ~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 219 NMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999988 99998432 367777776666654
No 232
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=159.54 Aligned_cols=99 Identities=28% Similarity=0.377 Sum_probs=82.4
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. +..+.++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh 202 (249)
T PRK14253 124 RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTH 202 (249)
T ss_pred HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 345556653 456788999999999999999999999999999999999999999999999999865 589999999
Q ss_pred CHHHHHh-hcceeeecccccccccCC
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+++++.. ||+++. +..|+......
T Consensus 203 ~~~~~~~~~d~i~~-l~~G~i~~~g~ 227 (249)
T PRK14253 203 SMQQARRISDRTAF-FLMGELVEHDD 227 (249)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCC
Confidence 9999988 998873 33444444333
No 233
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.9e-23 Score=159.80 Aligned_cols=91 Identities=31% Similarity=0.367 Sum_probs=78.3
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hccee
Q psy6940 18 ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 18 ~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~ 96 (123)
+..++++.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|++++ ++.|||++||+++++.. ||+++
T Consensus 140 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~~d~i~ 218 (252)
T PRK14272 140 DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQAARVSDTTS 218 (252)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEE
Confidence 45688899999999999999999999999999999999999999999999999986 47999999999999988 99987
Q ss_pred eecccccccccCCc
Q psy6940 97 GGFFAPKLHLSLNE 110 (123)
Q Consensus 97 ~~~~~~~~~~~~~~ 110 (123)
. +..|+......+
T Consensus 219 ~-l~~G~i~~~~~~ 231 (252)
T PRK14272 219 F-FLVGDLVEHGPT 231 (252)
T ss_pred E-EECCEEEEeCCH
Confidence 3 334444433333
No 234
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=159.82 Aligned_cols=99 Identities=29% Similarity=0.316 Sum_probs=82.1
Q ss_pred HHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 10 ILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 10 ~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+++.+++ .+..++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+
T Consensus 128 ~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~ 206 (252)
T PRK14255 128 SLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHS 206 (252)
T ss_pred HHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECC
Confidence 3455554 2456889999999999999999999999999999999999999999999999999865 5899999999
Q ss_pred HHHHHh-hcceeeecccccccccCCc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
++++.. ||+++. +-.|+......+
T Consensus 207 ~~~~~~~~d~i~~-l~~G~i~~~~~~ 231 (252)
T PRK14255 207 MHQASRISDKTAF-FLTGNLIEFADT 231 (252)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCH
Confidence 999987 998873 234444444333
No 235
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.1e-23 Score=162.19 Aligned_cols=103 Identities=25% Similarity=0.286 Sum_probs=85.7
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. ...++++.+||+|||||++|||||+.+|+++||||||+|||+.++..+.+.++++++ +.|||++|
T Consensus 146 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivt 224 (272)
T PRK14236 146 ERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVT 224 (272)
T ss_pred HHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEe
Confidence 3456666664 356789999999999999999999999999999999999999999999999999875 78999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +..|+........+
T Consensus 225 H~~~~~~~~~d~i~~-l~~G~i~~~g~~~~ 253 (272)
T PRK14236 225 HNMQQAARVSDYTAF-MYMGKLVEYGDTDT 253 (272)
T ss_pred CCHHHHHhhCCEEEE-EECCEEEecCCHHH
Confidence 99999987 999873 33455544444333
No 236
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-23 Score=177.23 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=90.2
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.++.++++.+||||||||++|||||+.+|+++||||||+|||+..+..+.+.|.+++++|.|||++||+++
T Consensus 125 ~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 125 PEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred HHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 35678888888899999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHHh-hcceeeecccccccccCCchh
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++.. ||+++. +-.|+......+.+
T Consensus 205 ~i~~l~DrIiv-L~~GkIv~~G~~~e 229 (549)
T PRK13545 205 QVKSFCTKALW-LHYGQVKEYGDIKE 229 (549)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHH
Confidence 9988 999873 33455544444433
No 237
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=1.6e-23 Score=162.58 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=84.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.+..++++.+||+|||||++|||+++.+|++++|||||++||+..+..+.+.+++++++|+|||++||++
T Consensus 120 ~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 120 LDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 45678889988888999999999999999999999999999999999999999999999999999887789999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 200 ~~~~~~ad~i~ 210 (255)
T cd03236 200 AVLDYLSDYIH 210 (255)
T ss_pred HHHHHhCCEEE
Confidence 99987 99987
No 238
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2e-23 Score=162.39 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=79.9
Q ss_pred chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hcce
Q psy6940 17 FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTV 95 (123)
Q Consensus 17 ~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v 95 (123)
.+..+.++.+||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++.. ||++
T Consensus 158 ~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 158 KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred HHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEE
Confidence 3456889999999999999999999999999999999999999999999999999865 7899999999999987 9988
Q ss_pred eeecccccccccCCchh
Q psy6940 96 FGGFFAPKLHLSLNESE 112 (123)
Q Consensus 96 ~~~~~~~~~~~~~~~~~ 112 (123)
+. +-.|+........+
T Consensus 237 ~~-l~~G~i~~~g~~~~ 252 (271)
T PRK14238 237 AF-FLNGYVNEYDDTDK 252 (271)
T ss_pred EE-EECCEEEEeCCHHH
Confidence 73 33444444444333
No 239
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=8.5e-24 Score=156.89 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=81.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.+..++++.+||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++..+.|.|||++||++
T Consensus 104 ~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 183 (195)
T PRK13541 104 LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLE 183 (195)
T ss_pred HHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 35667888888888999999999999999999999999999999999999999999999999987666789999999999
Q ss_pred HHHHhhcce
Q psy6940 87 EEARQANTV 95 (123)
Q Consensus 87 ~~~~~~d~v 95 (123)
+.+..+|.+
T Consensus 184 ~~i~~~~~~ 192 (195)
T PRK13541 184 SSIKSAQIL 192 (195)
T ss_pred cccchhhee
Confidence 998887765
No 240
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=2.4e-23 Score=162.73 Aligned_cols=101 Identities=24% Similarity=0.261 Sum_probs=87.4
Q ss_pred HHHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEE
Q psy6940 7 PAEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHS---PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~---p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviiv 82 (123)
..++++++++.. ..++++.+|||||+||++||++|+.+ |+++||||||+|||+..+..+.+.+.++.++|.|||++
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIii 228 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVI 228 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 345677888876 47899999999999999999999996 79999999999999999999999999998789999999
Q ss_pred eCCHHHHHhhcceee-----eccccccccc
Q psy6940 83 THYIEEARQANTVFG-----GFFAPKLHLS 107 (123)
Q Consensus 83 tH~~~~~~~~d~v~~-----~~~~~~~~~~ 107 (123)
||+++++..||+++. |..+|+....
T Consensus 229 tH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 229 EHNLDVIKCADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred eCCHHHHHhCCEEEEecCCcCCCCCEEEEe
Confidence 999999877999882 2355555443
No 241
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.90 E-value=1.2e-23 Score=156.34 Aligned_cols=89 Identities=25% Similarity=0.261 Sum_probs=79.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++.+||+|||||++||||++.+|++++|||||+|||+.+++.+.+.+.+++++|.|||++||+.
T Consensus 108 ~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 108 IEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred HHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 46778889998889999999999999999999999999999999999999999999999999999877799999999998
Q ss_pred HHHHhhccee
Q psy6940 87 EEARQANTVF 96 (123)
Q Consensus 87 ~~~~~~d~v~ 96 (123)
..+. |++++
T Consensus 188 ~~~~-~~~~~ 196 (198)
T TIGR01189 188 LGLV-EAREL 196 (198)
T ss_pred cccc-ceEEe
Confidence 5443 35443
No 242
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.8e-23 Score=157.37 Aligned_cols=90 Identities=24% Similarity=0.302 Sum_probs=76.8
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeee
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGG 98 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~ 98 (123)
..++++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.+.|.++++ |.|||++||+++++..||+++.
T Consensus 130 ~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~- 207 (236)
T cd03253 130 IVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIV- 207 (236)
T ss_pred hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEE-
Confidence 34567889999999999999999999999999999999999999999999999876 9999999999999866998873
Q ss_pred cccccccccCCc
Q psy6940 99 FFAPKLHLSLNE 110 (123)
Q Consensus 99 ~~~~~~~~~~~~ 110 (123)
+-.|+.......
T Consensus 208 l~~g~i~~~~~~ 219 (236)
T cd03253 208 LKDGRIVERGTH 219 (236)
T ss_pred EECCEEEeeCCH
Confidence 334444443333
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.6e-23 Score=160.50 Aligned_cols=103 Identities=24% Similarity=0.311 Sum_probs=85.5
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. ...++++.+||+|||||++||||++.+|+++||||||+|||+..+..+.+.|+++. ++.|||++||
T Consensus 142 ~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH 220 (267)
T PRK14237 142 TSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTH 220 (267)
T ss_pred HHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 456677763 45788999999999999999999999999999999999999999999999999985 4789999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++++.. ||+++. +..|+........++
T Consensus 221 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 221 NMQQAARASDYTAF-FYLGDLIEYDKTRNI 249 (267)
T ss_pred CHHHHHHhcCEEEE-EECCEEEEeCCHHHH
Confidence 9999977 998873 334555444444433
No 244
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=1.9e-23 Score=173.59 Aligned_cols=97 Identities=24% Similarity=0.288 Sum_probs=84.9
Q ss_pred HHHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC-cEEEEEeC
Q psy6940 7 PAEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tviivtH 84 (123)
.+++++.+++.+ +.++++.+|||||||||+||||++.+|+++||||||+|||+.+++.+.+.|++++++| .|||++||
T Consensus 381 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsH 460 (490)
T PRK10938 381 AQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460 (490)
T ss_pred HHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 357788899987 8899999999999999999999999999999999999999999999999999998775 57999999
Q ss_pred CHHHHHh--hcceeeecccccc
Q psy6940 85 YIEEARQ--ANTVFGGFFAPKL 104 (123)
Q Consensus 85 ~~~~~~~--~d~v~~~~~~~~~ 104 (123)
|++++.. ||+++. +..|+.
T Consensus 461 d~~~~~~~~~d~v~~-l~~G~i 481 (490)
T PRK10938 461 HAEDAPACITHRLEF-VPDGDI 481 (490)
T ss_pred chhhhhhhhheeEEE-ecCCce
Confidence 9999974 666653 444543
No 245
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.8e-23 Score=160.93 Aligned_cols=103 Identities=28% Similarity=0.357 Sum_probs=85.0
Q ss_pred HHHHHHcCcch----hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA----LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~----~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.. ..++.+.+||||||||++||||++.+|+++||||||+|||+.+++.+.+.|+++++ +.|||++|
T Consensus 141 ~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivs 219 (276)
T PRK14271 141 QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVT 219 (276)
T ss_pred HHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 34567777653 45788999999999999999999999999999999999999999999999999875 58999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +..|+........+
T Consensus 220 H~~~~~~~~~dri~~-l~~G~i~~~g~~~~ 248 (276)
T PRK14271 220 HNLAQAARISDRAAL-FFDGRLVEEGPTEQ 248 (276)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHH
Confidence 99999988 998873 33455444444333
No 246
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.4e-23 Score=165.39 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=89.5
Q ss_pred HHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++ ....+.++.+||||||||++||||++.+|+++||||||++||+.+...+.+.|+++.+ ++|||++||
T Consensus 204 ~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH 282 (329)
T PRK14257 204 KSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTH 282 (329)
T ss_pred HHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeC
Confidence 44666665 2356789999999999999999999999999999999999999999999999998875 699999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+++++.. ||+++. +.+|+.....++.+++
T Consensus 283 ~l~~i~~~~Driiv-l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 283 SMAQAQRISDETVF-FYQGWIEEAGETKTIF 312 (329)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCHHHHh
Confidence 9999998 999874 5567777777777764
No 247
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.5e-23 Score=158.24 Aligned_cols=101 Identities=26% Similarity=0.297 Sum_probs=83.7
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. ...++++.+||+|||||++||||++.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||
T Consensus 128 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh 206 (253)
T PRK14261 128 KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTH 206 (253)
T ss_pred HHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEc
Confidence 455666653 346789999999999999999999999999999999999999999999999999875 589999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCch
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
+++++.. ||+++. +-.|+........
T Consensus 207 ~~~~~~~~~d~v~~-l~~G~i~~~g~~~ 233 (253)
T PRK14261 207 NMQQAARVSDYTGF-MYLGKLIEFDKTT 233 (253)
T ss_pred CHHHHHhhCCEEEE-EECCEEEEcCCHH
Confidence 9999987 999873 3345544444433
No 248
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=3.9e-23 Score=162.15 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=91.6
Q ss_pred HHHHHHcCcchhcCCCCCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy6940 8 AEILTRTRDFALRKLLPNW-----------TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~-----------LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g 76 (123)
.++++.+++.++.+.+|.. ||+|||||++||||++.+|++++|||||++||+...+.+.+.|+++. ++
T Consensus 109 ~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~ 187 (275)
T cd03289 109 WKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-AD 187 (275)
T ss_pred HHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CC
Confidence 3567788888888888876 99999999999999999999999999999999999999999999864 58
Q ss_pred cEEEEEeCCHHHHHhhcceeeecccccccccCCchhhhh
Q psy6940 77 QTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 77 ~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
+|||++||+++++..||+++. +..|+.....++.+++.
T Consensus 188 ~tii~isH~~~~i~~~dri~v-l~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 188 CTVILSEHRIEAMLECQRFLV-IEENKVRQYDSIQKLLN 225 (275)
T ss_pred CEEEEEECCHHHHHhCCEEEE-ecCCeEeecCCHHHHhh
Confidence 999999999998877999874 45677777777766654
No 249
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=9.2e-24 Score=164.36 Aligned_cols=90 Identities=27% Similarity=0.430 Sum_probs=86.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+.+++++++..+..+++.+||.|++|++.+..+++++|+++|||||||||||.+.+.+.+.+.+++++|.|||++||.|
T Consensus 111 ~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M 190 (300)
T COG4152 111 LQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190 (300)
T ss_pred HHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+.++. ||+++
T Consensus 191 e~vEeLCD~ll 201 (300)
T COG4152 191 EHVEELCDRLL 201 (300)
T ss_pred HHHHHHhhhhh
Confidence 99999 99998
No 250
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=7e-23 Score=156.76 Aligned_cols=103 Identities=26% Similarity=0.347 Sum_probs=85.9
Q ss_pred HHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++. ...++++..||+|||||++||||++.+|++++|||||+|||+.++..+.+.|++++ ++.|||++||
T Consensus 125 ~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tiii~sh 203 (250)
T PRK14266 125 ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTH 203 (250)
T ss_pred HHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEC
Confidence 456666653 35688899999999999999999999999999999999999999999999999986 4789999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++++.. ||+++. +..|+.....+..++
T Consensus 204 ~~~~~~~~~~~i~~-l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 204 NMQQATRVSKYTSF-FLNGEIIESGLTDQI 232 (250)
T ss_pred CHHHHHhhcCEEEE-EECCeEEEeCCHHHH
Confidence 9999988 777653 445666555555544
No 251
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=171.62 Aligned_cols=106 Identities=28% Similarity=0.373 Sum_probs=92.2
Q ss_pred HHHHHHcCcc---hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 8 AEILTRTRDF---ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~---~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
-++++++|+. ...+.+|++|||||||||.||.||+++|++||.||||++||...+.+|.++++++.++ |.++++||
T Consensus 136 lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfIT 215 (534)
T COG4172 136 LELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFIT 215 (534)
T ss_pred HHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEe
Confidence 3566777764 3568999999999999999999999999999999999999999999999999999876 99999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
||+..+.. +|+|+. |..|+.+.......++
T Consensus 216 HDL~iVr~~ADrV~V-M~~G~ivE~~~t~~lF 246 (534)
T COG4172 216 HDLGIVRKFADRVYV-MQHGEIVETGTTETLF 246 (534)
T ss_pred ccHHHHHHhhhhEEE-EeccEEeecCcHHHHh
Confidence 99999999 999984 5666666666655555
No 252
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=6e-23 Score=157.77 Aligned_cols=107 Identities=26% Similarity=0.368 Sum_probs=95.7
Q ss_pred HHHHHHHc-CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRT-RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~-~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
.+++.+.| .+.+.++++.++|||||||+++|||||+.+|++++|||||.||-|.-.+++++.|++++++ |.||++|++
T Consensus 116 ~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQ 195 (237)
T COG0410 116 LEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQ 195 (237)
T ss_pred HHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 56788888 5788999999999999999999999999999999999999999999999999999999976 889999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+...+.. +||.+. +-.|+.+.+....++.
T Consensus 196 n~~~Al~iaDr~yv-le~Griv~~G~~~eL~ 225 (237)
T COG0410 196 NARFALEIADRGYV-LENGRIVLSGTAAELL 225 (237)
T ss_pred cHHHHHHhhCEEEE-EeCCEEEEecCHHHHh
Confidence 9999988 999884 5566666666666665
No 253
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.6e-23 Score=158.89 Aligned_cols=105 Identities=25% Similarity=0.254 Sum_probs=87.4
Q ss_pred HHHHHHcCcch----hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA----LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~----~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.+ ..++++.+||+||+||++|||||+.+|+++||||||+|||+..+..+++.++++. ++.|||++|
T Consensus 127 ~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~is 205 (261)
T PRK14263 127 KHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVT 205 (261)
T ss_pred HHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 45677777642 4467889999999999999999999999999999999999999999999999985 478999999
Q ss_pred CCHHHHHh-hcceeeec-------ccccccccCCchhh
Q psy6940 84 HYIEEARQ-ANTVFGGF-------FAPKLHLSLNESEL 113 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~-------~~~~~~~~~~~~~~ 113 (123)
|+++++.. ||+++.-- -.|+........++
T Consensus 206 H~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 206 HNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243 (261)
T ss_pred CCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHH
Confidence 99999987 99987422 14666655555544
No 254
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.9e-23 Score=158.46 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=86.1
Q ss_pred HHHHHHcCcc----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDF----ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~----~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++. +..+.++..||+|||||++||||++.+|++++|||||+|||+.++..+.+.+.++++ +.|||++|
T Consensus 131 ~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvs 209 (257)
T PRK14246 131 EECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVS 209 (257)
T ss_pred HHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEE
Confidence 4567777774 456889999999999999999999999999999999999999999999999998864 68999999
Q ss_pred CCHHHHHh-hcceeeecccccccccCCchh
Q psy6940 84 HYIEEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
|+++++.. ||+++. +..|+........+
T Consensus 210 h~~~~~~~~~d~v~~-l~~g~i~~~g~~~~ 238 (257)
T PRK14246 210 HNPQQVARVADYVAF-LYNGELVEWGSSNE 238 (257)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEECCHHH
Confidence 99999977 998873 33455544444443
No 255
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=4.8e-23 Score=149.66 Aligned_cols=71 Identities=32% Similarity=0.495 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~~ 97 (123)
||+|||||++||||++.+|++++|||||+|||+..++.+.+.+++++++|.|||++||+++++.. ||+++.
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~ 154 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTV 154 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999997779999999999999887 998873
No 256
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.89 E-value=4.7e-23 Score=150.55 Aligned_cols=71 Identities=30% Similarity=0.426 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
||+|||||++||||++.+|+++||||||+|||+..+..+.+.+++++++|.|||++||+++++..||+++.
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~ 167 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILV 167 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999987779999999999998855998873
No 257
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.89 E-value=6.1e-23 Score=192.84 Aligned_cols=105 Identities=24% Similarity=0.396 Sum_probs=91.7
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+++++.+++.+++++++++|||||||||+||+||+.+|++++|||||+||||.+++.+++.|.+++++|+|||++||+++
T Consensus 2052 ~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2052 NWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred HHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45788899999999999999999999999999999999999999999999999999999999998877999999999999
Q ss_pred HHHh-hcceeeecccccccccCCchhh
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++. ||+++. +..|+.....+.+++
T Consensus 2132 e~e~lcDrV~I-L~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2132 ECEALCTRLAI-MVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 9998 999873 334444444444443
No 258
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=5.6e-23 Score=175.55 Aligned_cols=89 Identities=26% Similarity=0.301 Sum_probs=84.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++....++++.+|||||||||+||+||+.+|+++||||||++||+..+..+.+.|+++++ |.|||++||++
T Consensus 193 ~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~ 271 (590)
T PRK13409 193 LDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL 271 (590)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45788889998889999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 272 ~~l~~~~D~v~ 282 (590)
T PRK13409 272 AVLDYLADNVH 282 (590)
T ss_pred HHHHHhCCEEE
Confidence 99988 99986
No 259
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=9e-23 Score=153.27 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=70.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
+.++..||+|||||++||||++.+|+++||||||+|||+..++.+.+.++++.+ +.|||++||+++++..||+++.
T Consensus 134 ~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~ 209 (221)
T cd03244 134 EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRILV 209 (221)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEE
Confidence 468999999999999999999999999999999999999999999999998864 6899999999999877998873
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.89 E-value=6.2e-23 Score=150.96 Aligned_cols=71 Identities=25% Similarity=0.473 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~~ 97 (123)
||+|||||++||||++.+|+++||||||+|||+..++.+.+.+++++++|.|+|++||+++++.. ||+++.
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~ 176 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILV 176 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999987678999999999999988 999873
No 261
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=1.1e-22 Score=152.78 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=69.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR--YLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~--~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
+.++.+||+||||||+||||++.+|+++||||||+|||+..++.+.+ ++..+++.|.|||++||+++.+..||+++
T Consensus 135 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~ 212 (218)
T cd03290 135 GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWII 212 (218)
T ss_pred ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEE
Confidence 46789999999999999999999999999999999999999999998 66666666899999999999886699886
No 262
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=7.3e-23 Score=149.52 Aligned_cols=71 Identities=45% Similarity=0.782 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~~ 97 (123)
||+|||||++||||++.+|+++++||||++||+..+..+.+.|++++++|.|+|++||+++++.. ||+++.
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~ 167 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI 167 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999998778999999999999987 998873
No 263
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.89 E-value=5.2e-23 Score=169.14 Aligned_cols=107 Identities=26% Similarity=0.336 Sum_probs=94.0
Q ss_pred HHHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..++++.+|+.+ -++++|+++|||||||++||||++.+|++++||||||+||...+.++.++++++.++ |.+-+||||
T Consensus 406 v~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISH 485 (534)
T COG4172 406 VIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485 (534)
T ss_pred HHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 446778888764 679999999999999999999999999999999999999999999999999999865 999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+..+.. ||+|+. +-+|+.+..+..+..+
T Consensus 486 DL~VvrAl~~~viV-m~~GkiVE~G~~~~if 515 (534)
T COG4172 486 DLAVVRALCHRVIV-MRDGKIVEQGPTEAVF 515 (534)
T ss_pred cHHHHHHhhceEEE-EeCCEEeeeCCHHHHh
Confidence 9999998 999984 5566666666665554
No 264
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.8e-23 Score=163.49 Aligned_cols=91 Identities=27% Similarity=0.406 Sum_probs=87.3
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
..+++.+.+|+.++.+++|.+|||||||||+|+|||+..|++++||||.++||..-+++++-++.++.++ +..|++|||
T Consensus 108 ~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSH 187 (352)
T COG4148 108 QFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187 (352)
T ss_pred hHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEec
Confidence 3567889999999999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred CHHHHHh-hccee
Q psy6940 85 YIEEARQ-ANTVF 96 (123)
Q Consensus 85 ~~~~~~~-~d~v~ 96 (123)
.++++.+ ||+++
T Consensus 188 S~~Ev~RLAd~vV 200 (352)
T COG4148 188 SLDEVLRLADRVV 200 (352)
T ss_pred CHHHHHhhhheEE
Confidence 9999999 99998
No 265
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-22 Score=156.23 Aligned_cols=100 Identities=26% Similarity=0.300 Sum_probs=83.0
Q ss_pred HHHHHcCc----chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRD----FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l----~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++ .+..++++.+||+|||||++|||||+.+|+++||||||+|||+..+..+.+.|++++. +.|||++||
T Consensus 140 ~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth 218 (265)
T PRK14252 140 NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTH 218 (265)
T ss_pred HHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEec
Confidence 45555654 2456788999999999999999999999999999999999999999999999999865 689999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCc
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNE 110 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~ 110 (123)
+++++.. ||+++. +..|+.......
T Consensus 219 ~~~~~~~~~d~i~~-l~~G~i~~~g~~ 244 (265)
T PRK14252 219 NMQQAARVSDYTAY-MYMGELIEFGAT 244 (265)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCH
Confidence 9999987 999873 234444444333
No 266
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1e-22 Score=149.38 Aligned_cols=71 Identities=39% Similarity=0.619 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHHh-hcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQ-ANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~~-~d~v~~ 97 (123)
||+|||||++||||++.+|+++||||||+|||+.++..+.+.+++++++ |.|+|++||+++++.. ||+++.
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 173 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVV 173 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 9999999999999999999999999999999999999999999999877 8999999999999987 999873
No 267
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=2.4e-22 Score=149.97 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeec
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGF 99 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~ 99 (123)
.+.++.+||+||+||++||||++.+|+++||||||+|||+..+..+.+.|+++. +|.|+|++||+++++..||+++. +
T Consensus 119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~-l 196 (207)
T cd03369 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILV-M 196 (207)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEE-E
Confidence 467899999999999999999999999999999999999999999999999975 58999999999999866998873 3
Q ss_pred ccccc
Q psy6940 100 FAPKL 104 (123)
Q Consensus 100 ~~~~~ 104 (123)
..|+.
T Consensus 197 ~~g~i 201 (207)
T cd03369 197 DAGEV 201 (207)
T ss_pred ECCEE
Confidence 34443
No 268
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.7e-22 Score=169.52 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=86.1
Q ss_pred HHHHHHHcCc-chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRD-FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l-~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+++ ....++++.+|||||||||+||||++.+|+++||||||+|||+.+++.+.+.++++ +.|||++|||
T Consensus 418 ~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd 494 (530)
T PRK15064 418 VRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHD 494 (530)
T ss_pred HHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 3567888888 46789999999999999999999999999999999999999999999999999876 3499999999
Q ss_pred HHHHHh-hcceeeeccccccc-ccCCchh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLH-LSLNESE 112 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~-~~~~~~~ 112 (123)
++++.. ||+++. +..|+.. ...+..+
T Consensus 495 ~~~~~~~~d~i~~-l~~g~i~~~~g~~~~ 522 (530)
T PRK15064 495 REFVSSLATRIIE-ITPDGVVDFSGTYEE 522 (530)
T ss_pred HHHHHHhCCEEEE-EECCeEEEcCCCHHH
Confidence 999988 999873 3455543 3334333
No 269
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=2.2e-22 Score=155.20 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=78.5
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeee
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGG 98 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~ 98 (123)
..+.++.+||+|||||++||||++.+|+++||||||+|||+..+..+.+.++++. ++.|||++||+++.+..||+++.
T Consensus 149 ~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~- 226 (257)
T cd03288 149 VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLV- 226 (257)
T ss_pred EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEE-
Confidence 3455678999999999999999999999999999999999999999999998875 58999999999999877999873
Q ss_pred cccccccccCCchhh
Q psy6940 99 FFAPKLHLSLNESEL 113 (123)
Q Consensus 99 ~~~~~~~~~~~~~~~ 113 (123)
+..|+........++
T Consensus 227 l~~G~i~~~g~~~~~ 241 (257)
T cd03288 227 LSRGILVECDTPENL 241 (257)
T ss_pred EECCEEEEeCCHHHH
Confidence 345665555444443
No 270
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.88 E-value=1.6e-22 Score=170.87 Aligned_cols=91 Identities=27% Similarity=0.332 Sum_probs=77.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..||+++. +-.
T Consensus 481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iiv-l~~ 558 (588)
T PRK11174 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWV-MQD 558 (588)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEE-EeC
Confidence 3456799999999999999999999999999999999999999999998875 57999999999999888999983 234
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|+....++.+++.
T Consensus 559 G~i~e~G~~~eL~ 571 (588)
T PRK11174 559 GQIVQQGDYAELS 571 (588)
T ss_pred CeEeecCCHHHHH
Confidence 5555555555554
No 271
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.3e-22 Score=168.74 Aligned_cols=94 Identities=24% Similarity=0.218 Sum_probs=80.8
Q ss_pred HHHHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+++.+. .++++.+|||||||||+||+||+.+|+++||||||++||+.++..+.+.|.+ .|.|||+|||+
T Consensus 135 ~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd 211 (530)
T PRK15064 135 AGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHD 211 (530)
T ss_pred HHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence 3467888888654 4678999999999999999999999999999999999999999999998863 58899999999
Q ss_pred HHHHHh-hcceeeecccccc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKL 104 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~ 104 (123)
++++.. ||+++. +-.|+.
T Consensus 212 ~~~~~~~~d~i~~-l~~g~i 230 (530)
T PRK15064 212 RHFLNSVCTHMAD-LDYGEL 230 (530)
T ss_pred HHHHHhhcceEEE-EeCCEE
Confidence 999988 999883 224444
No 272
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.88 E-value=1.7e-22 Score=189.86 Aligned_cols=106 Identities=29% Similarity=0.389 Sum_probs=93.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++++++.+..++++++|||||||||+||+||+.+|+++||||||+|||+.+++.++++|++++ +|+|||++||++
T Consensus 1042 v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm 1120 (2272)
T TIGR01257 1042 MEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM 1120 (2272)
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 3567899999999999999999999999999999999999999999999999999999999999985 699999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+++.. ||+++. +..|+.....++.++.
T Consensus 1121 dea~~laDrI~i-L~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1121 DEADLLGDRIAI-ISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHhCCEEEE-EECCEEEEecCHHHHH
Confidence 99988 999873 4466666555555543
No 273
>PLN03211 ABC transporter G-25; Provisional
Probab=99.88 E-value=2.1e-22 Score=173.87 Aligned_cols=107 Identities=29% Similarity=0.349 Sum_probs=89.4
Q ss_pred HHHHHHHcCcchhcC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEE
Q psy6940 7 PAEILTRTRDFALRK-----LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~-----~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvii 81 (123)
.+++++.+++.+..+ ..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.+++++++|+|||+
T Consensus 182 v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~ 261 (659)
T PLN03211 182 AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261 (659)
T ss_pred HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 356788888877654 457789999999999999999999999999999999999999999999999878999999
Q ss_pred EeCCHH-HHHh-hcceeeecccccccccCCchhhh
Q psy6940 82 TTHYIE-EARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 82 vtH~~~-~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++|+++ .+.+ ||+++. +..|+........++.
T Consensus 262 ~sH~~~~~i~~~~D~iil-L~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 262 SMHQPSSRVYQMFDSVLV-LSEGRCLFFGKGSDAM 295 (659)
T ss_pred EecCCCHHHHHhhceEEE-ecCCcEEEECCHHHHH
Confidence 999997 4666 999983 3355665555555554
No 274
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.88 E-value=2.1e-22 Score=147.52 Aligned_cols=73 Identities=27% Similarity=0.475 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
+..||+|||||++||||++.+|+++||||||+|||+..++.+++.++++. ++.|||++||+++++..||+++.
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~ 168 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILF 168 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEE
Confidence 78999999999999999999999999999999999999999999999885 58999999999999866998873
No 275
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.88 E-value=4.3e-22 Score=167.44 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=79.9
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 18 ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 18 ~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
...+....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.++..+|+|+|++||+++.+..||+++.
T Consensus 446 t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~ 525 (544)
T TIGR01842 446 TVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILV 525 (544)
T ss_pred cccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 34455678899999999999999999999999999999999999999999999887568999999999998766999873
Q ss_pred ecccccccccCCchhh
Q psy6940 98 GFFAPKLHLSLNESEL 113 (123)
Q Consensus 98 ~~~~~~~~~~~~~~~~ 113 (123)
+-.|+.....+..++
T Consensus 526 -l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 526 -LQDGRIARFGERDEV 540 (544)
T ss_pred -EECCEEEeeCCHHHH
Confidence 345665555554444
No 276
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.88 E-value=3.2e-22 Score=149.29 Aligned_cols=87 Identities=30% Similarity=0.450 Sum_probs=75.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH--hhcceeee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR--QANTVFGG 98 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~--~~d~v~~~ 98 (123)
+..+.+||+||+||++||||++.+|+++||||||+|||+.++..+.+.+.+++++|.|||++||+++.+. .||+++.
T Consensus 99 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~- 177 (200)
T cd03217 99 RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHV- 177 (200)
T ss_pred hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEE-
Confidence 3445799999999999999999999999999999999999999999999998777899999999999987 4888873
Q ss_pred cccccccccC
Q psy6940 99 FFAPKLHLSL 108 (123)
Q Consensus 99 ~~~~~~~~~~ 108 (123)
+..|+.....
T Consensus 178 l~~G~i~~~~ 187 (200)
T cd03217 178 LYDGRIVKSG 187 (200)
T ss_pred EECCEEEEEc
Confidence 3455555444
No 277
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=3.3e-22 Score=148.93 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=69.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR-YLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
.+.++.+||+|||||++||||++.+|+++|+||||++||+..++.+.+ +++++.++|.|||++||+++.+..||+++
T Consensus 121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~ 198 (204)
T cd03250 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIV 198 (204)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEE
Confidence 456789999999999999999999999999999999999999999988 46666556899999999999887788876
No 278
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.2e-22 Score=148.43 Aligned_cols=72 Identities=35% Similarity=0.447 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH-HHh-hcceee
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE-ARQ-ANTVFG 97 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~-~~~-~d~v~~ 97 (123)
+|||||+||++||||++.+|+++++||||+|||+.++..+++.+++++++|.|||++||+++. +.. ||+++.
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~ 181 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLL 181 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEE
Confidence 899999999999999999999999999999999999999999999987678999999999984 555 999873
No 279
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.87 E-value=4.2e-22 Score=148.18 Aligned_cols=72 Identities=42% Similarity=0.540 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH-HHHh-hcceee
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE-EARQ-ANTVFG 97 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~-~~~~-~d~v~~ 97 (123)
.||+|||||++|||||+.+|+++||||||+|||+..++.+.+.|+++.++|+|||++||+++ ++.. ||+++.
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~ 184 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLL 184 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEE
Confidence 89999999999999999999999999999999999999999999998777999999999996 6766 998873
No 280
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=3e-22 Score=168.97 Aligned_cols=89 Identities=27% Similarity=0.362 Sum_probs=74.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccccc
Q psy6940 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAPK 103 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~~ 103 (123)
..+||||||||++||||++++|+++||||||++||+.+...+.+.+.++. +++|+|+|||++..+..||+|+. +-.|+
T Consensus 478 g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii~-l~~g~ 555 (582)
T PRK11176 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEILV-VEDGE 555 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEE-EECCE
Confidence 46699999999999999999999999999999999999999999998875 47999999999998888999983 22344
Q ss_pred ccccCCchhhh
Q psy6940 104 LHLSLNESELL 114 (123)
Q Consensus 104 ~~~~~~~~~~~ 114 (123)
....++.+++.
T Consensus 556 i~e~g~~~~l~ 566 (582)
T PRK11176 556 IVERGTHAELL 566 (582)
T ss_pred EEEeCCHHHHH
Confidence 44444444443
No 281
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.87 E-value=7.9e-22 Score=148.87 Aligned_cols=101 Identities=13% Similarity=-0.036 Sum_probs=83.4
Q ss_pred HHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 11 LTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 11 l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
.+.+++....++++..||+|||||++||||++.+|+++|+||||+++|+..++.+.+.+.+..+ +.|+|++||++.++.
T Consensus 89 ~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vsH~~~~~~ 167 (213)
T PRK15177 89 YQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLTHNPRLIK 167 (213)
T ss_pred HHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEECCHHHHH
Confidence 3445666777899999999999999999999999999999999999999999999998765433 468999999999998
Q ss_pred h-hcceeeecccccccccCCchhh
Q psy6940 91 Q-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 91 ~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
. ||+++. +..|+.....+-...
T Consensus 168 ~~~d~i~~-l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 168 EHCHAFGV-LLHGKITMCEDLAQA 190 (213)
T ss_pred HhcCeeEE-EECCeEEEeCCHHHH
Confidence 7 999873 446666655544444
No 282
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=5.6e-22 Score=167.64 Aligned_cols=86 Identities=24% Similarity=0.289 Sum_probs=77.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.. .++++.+|||||||||+||||++.+|+++||||||++||+.++..+.+.|+++. .|||+|||++
T Consensus 145 ~~~~l~~~gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~ 220 (556)
T PRK11819 145 LEIAMDALRCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR 220 (556)
T ss_pred HHHHHHhCCCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH
Confidence 345677888753 688999999999999999999999999999999999999999999999998763 4999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 221 ~~~~~~~d~i~ 231 (556)
T PRK11819 221 YFLDNVAGWIL 231 (556)
T ss_pred HHHHhhcCeEE
Confidence 99998 99988
No 283
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.9e-22 Score=144.93 Aligned_cols=70 Identities=37% Similarity=0.633 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
||+|||||++||||++.+|+++||||||+|||+..+..+.+.+.++. +++|||++||+++++..||+++.
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~ 166 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRDADRIIV 166 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999986 47999999999999877998873
No 284
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.1e-22 Score=171.26 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=79.5
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||
T Consensus 129 ~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd 205 (638)
T PRK10636 129 AASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHD 205 (638)
T ss_pred HHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 45678888886 5779999999999999999999999999999999999999999999999988775 4699999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
+.++.. ||+++
T Consensus 206 ~~~l~~~~d~i~ 217 (638)
T PRK10636 206 RDFLDPIVDKII 217 (638)
T ss_pred HHHHHHhcCEEE
Confidence 999988 99987
No 285
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.87 E-value=6.7e-22 Score=144.05 Aligned_cols=72 Identities=32% Similarity=0.459 Sum_probs=66.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
++.+||+|||||++||||++.+|+++||||||++||+..++.+.+.++++ +.|+|++||+++....||+++.
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~ 159 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLD 159 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEE
Confidence 57899999999999999999999999999999999999999999999875 5899999999987645999873
No 286
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.87 E-value=7.4e-22 Score=146.42 Aligned_cols=70 Identities=29% Similarity=0.443 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC-cEEEEEeCCHHHHHh-hccee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tviivtH~~~~~~~-~d~v~ 96 (123)
||+|||||++||||++.+|++++|||||++||+..++.+.+.+.++++++ .|||++||+++++.. ||+++
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~ 143 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH 143 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999987664 899999999999987 99987
No 287
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.3e-22 Score=151.93 Aligned_cols=90 Identities=29% Similarity=0.333 Sum_probs=83.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
+.+.+..+|+.++.++++.+|||||||||.|||||+.+|++++||||+++||.-.++.+.+++-++.++ |+.+++|||+
T Consensus 113 a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ 192 (259)
T COG4525 113 AHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD 192 (259)
T ss_pred HHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 456788899999999999999999999999999999999999999999999999999999999887654 9999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.- +++++
T Consensus 193 ieEAlflatrLv 204 (259)
T COG4525 193 IEEALFLATRLV 204 (259)
T ss_pred HHHHHhhhheeE
Confidence 999987 88887
No 288
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=6.7e-22 Score=169.92 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=79.8
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++++++. ...++++.+|||||||||+||++++.+|++|||||||+|||+.++..+.+.|.++ .| |||+||||
T Consensus 410 ~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd 486 (638)
T PRK10636 410 LRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHD 486 (638)
T ss_pred HHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCC
Confidence 35678888885 4688999999999999999999999999999999999999999999999999887 34 99999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 487 ~~~~~~~~d~i~ 498 (638)
T PRK10636 487 RHLLRSTTDDLY 498 (638)
T ss_pred HHHHHHhCCEEE
Confidence 999988 99988
No 289
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.87 E-value=8.6e-22 Score=166.28 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=79.6
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++++++.. ..++++.+|||||||||+||||++.+|+++||||||+|||+.+++.+.+.|.++. | |||++|||+
T Consensus 424 ~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~ 500 (552)
T TIGR03719 424 RAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR 500 (552)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH
Confidence 46788888864 5799999999999999999999999999999999999999999999999999873 4 899999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 501 ~~~~~~~d~i~~ 512 (552)
T TIGR03719 501 WFLDRIATHILA 512 (552)
T ss_pred HHHHHhCCEEEE
Confidence 99988 999884
No 290
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.87 E-value=9.7e-22 Score=164.84 Aligned_cols=102 Identities=25% Similarity=0.231 Sum_probs=89.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+.++++++++..-.+.++.+||.||||.|+||||+..+++++||||||++|+....+.+++.+++++++|.+||+|||.+
T Consensus 126 A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl 205 (500)
T COG1129 126 ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL 205 (500)
T ss_pred HHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 45677888764338899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcceeeecccccccccCC
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+++.+ |||+.. +-+|+.+.+..
T Consensus 206 ~Ei~~i~DritV-lRDG~~v~~~~ 228 (500)
T COG1129 206 DEVFEIADRITV-LRDGRVVGTRP 228 (500)
T ss_pred HHHHHhcCEEEE-EeCCEEeeecc
Confidence 99999 999983 44555554444
No 291
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.87 E-value=1.2e-21 Score=168.57 Aligned_cols=90 Identities=34% Similarity=0.425 Sum_probs=84.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++++++.++.++++.+||+||+||++|||||+.+|+++||||||+|||+.+++.+.+++++++++|.|+|++||++
T Consensus 125 ~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~ 204 (648)
T PRK10535 125 AQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDP 204 (648)
T ss_pred HHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 35678888998889999999999999999999999999999999999999999999999999999877799999999999
Q ss_pred HHHHhhccee
Q psy6940 87 EEARQANTVF 96 (123)
Q Consensus 87 ~~~~~~d~v~ 96 (123)
+.+..||+++
T Consensus 205 ~~~~~~d~i~ 214 (648)
T PRK10535 205 QVAAQAERVI 214 (648)
T ss_pred HHHHhCCEEE
Confidence 9886699987
No 292
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.87 E-value=1.4e-21 Score=146.47 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=78.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEE
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviiv 82 (123)
.+++++. .+..++++.+||+|||||++||++++ .+|++++|||||+|||+..+..+.+.++++++ +.|||++
T Consensus 97 ~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~tiIii 172 (197)
T cd03278 97 VSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK-ETQFIVI 172 (197)
T ss_pred HHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc-CCEEEEE
Confidence 4455555 55678899999999999999999997 46799999999999999999999999999864 6899999
Q ss_pred eCCHHHHHhhcceeeecccc
Q psy6940 83 THYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 83 tH~~~~~~~~d~v~~~~~~~ 102 (123)
||+++++..||+++.....+
T Consensus 173 tH~~~~~~~~d~v~~~~~~~ 192 (197)
T cd03278 173 THRKGTMEAADRLYGVTMQE 192 (197)
T ss_pred ECCHHHHhhcceEEEEEecc
Confidence 99999876699998654444
No 293
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.87 E-value=8.7e-22 Score=166.91 Aligned_cols=105 Identities=29% Similarity=0.346 Sum_probs=87.1
Q ss_pred HHHHHHcCcchhcCC----------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc
Q psy6940 8 AEILTRTRDFALRKL----------LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~----------~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~ 77 (123)
.++++.+++.++.+. ...+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++
T Consensus 447 ~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~ 525 (574)
T PRK11160 447 IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNK 525 (574)
T ss_pred HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCC
Confidence 345677777665443 566799999999999999999999999999999999999999999999875 589
Q ss_pred EEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 78 TIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 78 tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+|++||+++.+..||+++. +-.|+.....+.+++.
T Consensus 526 tviiitHr~~~~~~~d~i~~-l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 526 TVLMITHRLTGLEQFDRICV-MDNGQIIEQGTHQELL 561 (574)
T ss_pred EEEEEecChhHHHhCCEEEE-EeCCeEEEeCCHHHHH
Confidence 99999999999888999974 3456666666655554
No 294
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.87 E-value=8.6e-22 Score=168.56 Aligned_cols=107 Identities=26% Similarity=0.304 Sum_probs=91.3
Q ss_pred HHHHHHHcCcchhcCCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEE
Q psy6940 7 PAEILTRTRDFALRKLLPN------WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII 80 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~------~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 80 (123)
.+++++.+++.+.+|.+++ .|||||||||+||++|+.+|++++|||||+|||+..+..+++.+++++++|+|||
T Consensus 141 v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi 220 (617)
T TIGR00955 141 VDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTII 220 (617)
T ss_pred HHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEE
Confidence 5678888999888888876 4999999999999999999999999999999999999999999999987799999
Q ss_pred EEeCCHH-HHHh-hcceeeecccccccccCCchhhh
Q psy6940 81 ITTHYIE-EARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 81 ivtH~~~-~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+++|++. ++.. ||+++. +..|+....+.+.++.
T Consensus 221 ~~~hq~~~~i~~~~D~i~l-l~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 221 CTIHQPSSELFELFDKIIL-MAEGRVAYLGSPDQAV 255 (617)
T ss_pred EEeCCCCHHHHHHhceEEE-eeCCeEEEECCHHHHH
Confidence 9999995 5665 999973 3355555555555543
No 295
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.86 E-value=1.2e-21 Score=164.52 Aligned_cols=104 Identities=27% Similarity=0.327 Sum_probs=82.1
Q ss_pred HHHHHcCcchhcCC-----------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc
Q psy6940 9 EILTRTRDFALRKL-----------LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77 (123)
Q Consensus 9 e~l~~~~l~~~~~~-----------~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~ 77 (123)
++++.+++.++.++ ....||||||||++||||++.+|++++|||||++||+.+.+.+.+.|.++. +++
T Consensus 441 ~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~ 519 (571)
T TIGR02203 441 RALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGR 519 (571)
T ss_pred HHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCC
Confidence 45666666543322 235799999999999999999999999999999999999999999998874 579
Q ss_pred EEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 78 TIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 78 tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+|++||+...+..||+++. +-.|+.....+..++.
T Consensus 520 tiIiitH~~~~~~~~D~ii~-l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 520 TTLVIAHRLSTIEKADRIVV-MDDGRIVERGTHNELL 555 (571)
T ss_pred EEEEEehhhHHHHhCCEEEE-EeCCEEEeeCCHHHHH
Confidence 99999999988877999983 1235555555555543
No 296
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.8e-22 Score=166.49 Aligned_cols=112 Identities=26% Similarity=0.362 Sum_probs=89.8
Q ss_pred HHHHHcCcchhc-----------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc
Q psy6940 9 EILTRTRDFALR-----------KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77 (123)
Q Consensus 9 e~l~~~~l~~~~-----------~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~ 77 (123)
++++++++.++. +.-...||||||||++|||+|.+|.+++||||||.|||+.+.+++++.+.+.. +|+
T Consensus 446 ~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~k 524 (573)
T COG4987 446 AALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGK 524 (573)
T ss_pred HHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCC
Confidence 467777776433 44567899999999999999999999999999999999999999999998754 589
Q ss_pred EEEEEeCCHHHHHhhccee----eecccccccccCCchhhhhhhhhhc
Q psy6940 78 TIIITTHYIEEARQANTVF----GGFFAPKLHLSLNESELLVYKTVEL 121 (123)
Q Consensus 78 tviivtH~~~~~~~~d~v~----~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (123)
|+|+|||++..++.||+|+ |.+.....+..+...+..++++.|+
T Consensus 525 Tll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q~ 572 (573)
T COG4987 525 TLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572 (573)
T ss_pred eEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHhcc
Confidence 9999999999999999988 2233444444444455556777664
No 297
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.86 E-value=1.7e-21 Score=165.04 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=78.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++||||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||++..+..||+++. +-.|
T Consensus 473 ~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~-~~~tvIivtHr~~~l~~~D~ii~-l~~G 550 (592)
T PRK10790 473 QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR-EHTTLVVIAHRLSTIVEADTILV-LHRG 550 (592)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEE-EECC
Confidence 456799999999999999999999999999999999999999999998876 46899999999999888999983 3467
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+....++.+++.
T Consensus 551 ~i~~~G~~~~L~ 562 (592)
T PRK10790 551 QAVEQGTHQQLL 562 (592)
T ss_pred EEEEEcCHHHHH
Confidence 777777766664
No 298
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.86 E-value=2.7e-21 Score=163.52 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=79.3
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++.+++.. ..++++.+|||||||||+||||++.+|+++||||||+|||+.++..+.+.|.++. | |||++|||+
T Consensus 426 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~ 502 (556)
T PRK11819 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR 502 (556)
T ss_pred HHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH
Confidence 45788888864 5799999999999999999999999999999999999999999999999998863 4 899999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 503 ~~~~~~~d~i~~ 514 (556)
T PRK11819 503 WFLDRIATHILA 514 (556)
T ss_pred HHHHHhCCEEEE
Confidence 99988 999874
No 299
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.4e-21 Score=165.17 Aligned_cols=110 Identities=28% Similarity=0.395 Sum_probs=85.9
Q ss_pred HHHHHcCcchhcCC----------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcE
Q psy6940 9 EILTRTRDFALRKL----------LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT 78 (123)
Q Consensus 9 e~l~~~~l~~~~~~----------~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~t 78 (123)
+++++.++.++.+. ....|||||+|||++|||+..+++++++||||++||.++.+.+.+.|.++.+ ++|
T Consensus 429 ~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~kt 507 (559)
T COG4988 429 AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKT 507 (559)
T ss_pred HHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCe
Confidence 45666666554432 3445999999999999999999999999999999999999999999999875 599
Q ss_pred EEEEeCCHHHHHhhccee----eecccccccccCCchhhhhhhhh
Q psy6940 79 IIITTHYIEEARQANTVF----GGFFAPKLHLSLNESELLVYKTV 119 (123)
Q Consensus 79 viivtH~~~~~~~~d~v~----~~~~~~~~~~~~~~~~~~~~~~~ 119 (123)
||++||++..+..+|+|+ |.+.+-..+..+...+..+++++
T Consensus 508 vl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~ 552 (559)
T COG4988 508 VLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLL 552 (559)
T ss_pred EEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHH
Confidence 999999999999999998 33333334444444444455554
No 300
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.86 E-value=1.9e-21 Score=166.82 Aligned_cols=92 Identities=24% Similarity=0.311 Sum_probs=79.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++. .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|.++. .|||+||||.
T Consensus 139 ~~~~l~~lgl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~ 213 (635)
T PRK11147 139 INEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR 213 (635)
T ss_pred HHHHHHhCCCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH
Confidence 45667778775 388999999999999999999999999999999999999999999999998863 5999999999
Q ss_pred HHHHh-hcceeeecccccc
Q psy6940 87 EEARQ-ANTVFGGFFAPKL 104 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~ 104 (123)
.++.. ||+++. +-.|+.
T Consensus 214 ~~l~~~~d~i~~-L~~G~i 231 (635)
T PRK11147 214 SFIRNMATRIVD-LDRGKL 231 (635)
T ss_pred HHHHHhcCeEEE-EECCEE
Confidence 99988 999873 234444
No 301
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.86 E-value=1.4e-21 Score=169.91 Aligned_cols=93 Identities=32% Similarity=0.426 Sum_probs=84.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
.....+||||||||++||||++++|+++|||||||+||+.+.+.+.+.+.++. .|+|+|++||++..+..||+++. +-
T Consensus 604 ~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiV-l~ 681 (709)
T COG2274 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIV-LD 681 (709)
T ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEE-cc
Confidence 45667899999999999999999999999999999999999999999999876 57999999999999999999985 56
Q ss_pred cccccccCCchhhhh
Q psy6940 101 APKLHLSLNESELLV 115 (123)
Q Consensus 101 ~~~~~~~~~~~~~~~ 115 (123)
+|+...+.+.++++.
T Consensus 682 ~Gkiv~~gs~~ell~ 696 (709)
T COG2274 682 QGKIVEQGSHEELLA 696 (709)
T ss_pred CCceeccCCHHHHHH
Confidence 788888888888875
No 302
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.86 E-value=2.4e-21 Score=166.98 Aligned_cols=92 Identities=25% Similarity=0.336 Sum_probs=80.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..||+++. +-.
T Consensus 597 e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iiv-l~~ 674 (694)
T TIGR03375 597 ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIV-MDN 674 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEE-EeC
Confidence 3456899999999999999999999999999999999999999999998876 47999999999999877999984 346
Q ss_pred ccccccCCchhhhh
Q psy6940 102 PKLHLSLNESELLV 115 (123)
Q Consensus 102 ~~~~~~~~~~~~~~ 115 (123)
|+....++.++++.
T Consensus 675 G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 675 GRIVADGPKDQVLE 688 (694)
T ss_pred CEEEeeCCHHHHHH
Confidence 77777777776653
No 303
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.1e-22 Score=150.91 Aligned_cols=107 Identities=25% Similarity=0.289 Sum_probs=96.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++..+||||||||..||..++.+.+.++||||.++||......+++.+++++++ |+||++|-||
T Consensus 116 I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHD 195 (252)
T COG4604 116 INEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195 (252)
T ss_pred HHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 467899999999999999999999999999999999999999999999999999999999999999887 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. +|+++. +-.|+.+..+.+++..
T Consensus 196 INfAS~YsD~IVA-lK~G~vv~~G~~~eii 224 (252)
T COG4604 196 INFASCYSDHIVA-LKNGKVVKQGSPDEII 224 (252)
T ss_pred ccHHHhhhhheee-ecCCEEEecCCHHHhc
Confidence 999998 999883 5556666666555543
No 304
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=1.5e-21 Score=164.75 Aligned_cols=85 Identities=25% Similarity=0.256 Sum_probs=75.8
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+.|.++ +.|||+|||+++
T Consensus 144 ~~~l~~~~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~ 219 (552)
T TIGR03719 144 EIAMDALRCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRY 219 (552)
T ss_pred HHHHhhCCCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHH
Confidence 34566666643 58899999999999999999999999999999999999999999999998875 359999999999
Q ss_pred HHHh-hccee
Q psy6940 88 EARQ-ANTVF 96 (123)
Q Consensus 88 ~~~~-~d~v~ 96 (123)
++.. ||+++
T Consensus 220 ~~~~~~d~v~ 229 (552)
T TIGR03719 220 FLDNVAGWIL 229 (552)
T ss_pred HHHhhcCeEE
Confidence 9998 99987
No 305
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.86 E-value=1.5e-21 Score=164.70 Aligned_cols=91 Identities=30% Similarity=0.397 Sum_probs=80.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
.....||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +|+|+|+++|++..+..||+|+. +-+
T Consensus 461 e~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiV-l~~ 538 (567)
T COG1132 461 ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIV-LDN 538 (567)
T ss_pred CCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEE-EEC
Confidence 3456899999999999999999999999999999999999999999999877 67899999999999999999984 446
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|+....++..++.
T Consensus 539 G~i~e~G~h~eLl 551 (567)
T COG1132 539 GRIVERGTHEELL 551 (567)
T ss_pred CEEEEecCHHHHH
Confidence 6666777777765
No 306
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.86 E-value=2.7e-21 Score=166.44 Aligned_cols=88 Identities=30% Similarity=0.368 Sum_probs=75.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+.++++ ++|+|++||+++.+..||+|+. +-+|
T Consensus 585 ~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iiv-l~~G 660 (686)
T TIGR03797 585 GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYV-LDAG 660 (686)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEE-EECC
Confidence 34679999999999999999999999999999999999999999999875 5799999999999988999983 3356
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+....++.+++.
T Consensus 661 ~iv~~G~~~~Ll 672 (686)
T TIGR03797 661 RVVQQGTYDELM 672 (686)
T ss_pred EEEEECCHHHHH
Confidence 666666665554
No 307
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=2e-21 Score=172.92 Aligned_cols=104 Identities=23% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 10 ILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 10 ~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++.+|+..+ .++++.+|||||+|||.||++|+.+| +++||||||+|||+..+..+++.|++++++|.|||+|+|++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4666777666 69999999999999999999999997 99999999999999999999999999988899999999999
Q ss_pred HHHHhhcceee-----ecccccccccCCchhh
Q psy6940 87 EEARQANTVFG-----GFFAPKLHLSLNESEL 113 (123)
Q Consensus 87 ~~~~~~d~v~~-----~~~~~~~~~~~~~~~~ 113 (123)
+++..||+++. |...|+.....++.++
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~ 583 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASGTPEEI 583 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeeccCHHHH
Confidence 99877999982 3366776666665554
No 308
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.8e-21 Score=144.57 Aligned_cols=78 Identities=23% Similarity=0.276 Sum_probs=68.9
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEE-eCCHHHHHh-hccee
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT-THYIEEARQ-ANTVF 96 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviiv-tH~~~~~~~-~d~v~ 96 (123)
.+.++..||+|||||++|||||+.+|+++||||||+|||+..++.+.+.+++++++ +.|+|++ +|+.+++.. ||+++
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~ 191 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL 191 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE
Confidence 57889999999999999999999999999999999999999999999999998765 6665555 556678877 99887
Q ss_pred e
Q psy6940 97 G 97 (123)
Q Consensus 97 ~ 97 (123)
.
T Consensus 192 ~ 192 (202)
T cd03233 192 V 192 (202)
T ss_pred E
Confidence 3
No 309
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.85 E-value=2.8e-21 Score=163.69 Aligned_cols=89 Identities=31% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|+|||+++.+..||+++. +-.|
T Consensus 468 ~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~-l~~G 545 (588)
T PRK13657 468 RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILV-FDNG 545 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEE-EECC
Confidence 455799999999999999999999999999999999999999999998865 47999999999998877999983 2345
Q ss_pred cccccCCchhh
Q psy6940 103 KLHLSLNESEL 113 (123)
Q Consensus 103 ~~~~~~~~~~~ 113 (123)
+.....+.+++
T Consensus 546 ~i~~~g~~~~l 556 (588)
T PRK13657 546 RVVESGSFDEL 556 (588)
T ss_pred EEEEeCCHHHH
Confidence 55555555444
No 310
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.85 E-value=3.3e-21 Score=161.20 Aligned_cols=74 Identities=31% Similarity=0.469 Sum_probs=68.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..||+++.
T Consensus 455 ~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEe
Confidence 457899999999999999999999999999999999999999999998875 58999999999999877999873
No 311
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.85 E-value=4.2e-21 Score=165.64 Aligned_cols=89 Identities=34% Similarity=0.407 Sum_probs=77.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.+++ .++|+|++||+++.+..||+++. +-.
T Consensus 611 e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iiv-l~~ 686 (710)
T TIGR03796 611 EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIV-LER 686 (710)
T ss_pred cCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEE-EeC
Confidence 34567999999999999999999999999999999999999999999875 48999999999999988999984 345
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|+....++.+++.
T Consensus 687 G~i~~~G~~~~Ll 699 (710)
T TIGR03796 687 GKVVQRGTHEELW 699 (710)
T ss_pred CEEEEecCHHHHH
Confidence 6666666666665
No 312
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.85 E-value=2.2e-21 Score=164.90 Aligned_cols=93 Identities=26% Similarity=0.298 Sum_probs=77.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeec
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGF 99 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~ 99 (123)
.+.....||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+.++. +++|||++||+++.+..||+++. +
T Consensus 465 ~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~~-l 542 (585)
T TIGR01192 465 VGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVLF-L 542 (585)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEEE-E
Confidence 345678899999999999999999999999999999999999999999998874 58999999999999977999883 2
Q ss_pred ccccccccCCchhhh
Q psy6940 100 FAPKLHLSLNESELL 114 (123)
Q Consensus 100 ~~~~~~~~~~~~~~~ 114 (123)
-.|+.....+.+++.
T Consensus 543 ~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 543 DQGRLIEKGSFQELI 557 (585)
T ss_pred ECCEEEEECCHHHHH
Confidence 344444444444443
No 313
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=5.9e-21 Score=166.28 Aligned_cols=95 Identities=21% Similarity=0.208 Sum_probs=81.8
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+++. ...++++.+|||||||||+|||+++.+|++|||||||+|||+.++..+.+.+.++ .| |||++|||
T Consensus 607 i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd 683 (718)
T PLN03073 607 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHD 683 (718)
T ss_pred HHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECC
Confidence 34678888886 4678999999999999999999999999999999999999999999988887764 34 99999999
Q ss_pred HHHHHh-hcceeeeccccccc
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLH 105 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~ 105 (123)
++++.. ||+++. +..|+..
T Consensus 684 ~~~i~~~~drv~~-l~~G~i~ 703 (718)
T PLN03073 684 EHLISGSVDELWV-VSEGKVT 703 (718)
T ss_pred HHHHHHhCCEEEE-EECCEEE
Confidence 999998 999873 3355544
No 314
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=3.9e-21 Score=170.84 Aligned_cols=103 Identities=26% Similarity=0.295 Sum_probs=88.5
Q ss_pred HHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 11 LTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 11 l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+..+++..+ .++++.+|||||+|||.||++|+.+| +++||||||+|||+.....+.+.|++++++|.|||+|+|+++
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~ 550 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE 550 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 455666555 68999999999999999999999986 899999999999999999999999999888999999999999
Q ss_pred HHHhhcceee-----ecccccccccCCchhh
Q psy6940 88 EARQANTVFG-----GFFAPKLHLSLNESEL 113 (123)
Q Consensus 88 ~~~~~d~v~~-----~~~~~~~~~~~~~~~~ 113 (123)
++..||+++. |..+|+.....++.++
T Consensus 551 ~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el 581 (924)
T TIGR00630 551 TIRAADYVIDIGPGAGIHGGEVVASGTPEEI 581 (924)
T ss_pred HHhhCCEEEEecccccCCCCEEeeccCHHHH
Confidence 9877999982 3356776666665554
No 315
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.6e-21 Score=148.60 Aligned_cols=90 Identities=28% Similarity=0.337 Sum_probs=83.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CcEEEEEeC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ--GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tviivtH 84 (123)
+..+++.+++.++++++..+||-||||||-|||||+.+|+++||||||+|||..+++.+.+.+.++... +.++|+|||
T Consensus 152 a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtH 231 (257)
T COG1119 152 AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231 (257)
T ss_pred HHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 456789999999999999999999999999999999999999999999999999999999999998765 789999999
Q ss_pred CHHHHHh-hccee
Q psy6940 85 YIEEARQ-ANTVF 96 (123)
Q Consensus 85 ~~~~~~~-~d~v~ 96 (123)
+.+++.. .++++
T Consensus 232 h~eEi~~~~th~l 244 (257)
T COG1119 232 HAEEIPPCFTHRL 244 (257)
T ss_pred chhhcccccceEE
Confidence 9999987 66665
No 316
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.3e-21 Score=146.52 Aligned_cols=111 Identities=26% Similarity=0.272 Sum_probs=98.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEE
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLH------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII 80 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 80 (123)
++++++++++.+++.+....|||||||||.+||.|+. ++++++|||||++||+..+..++++.++++++|..|+
T Consensus 116 ~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~ 195 (259)
T COG4559 116 AAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195 (259)
T ss_pred HHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEE
Confidence 4568899999999999999999999999999999985 4469999999999999999999999999999999999
Q ss_pred EEeCCHHHHHh-hcceeeecccccccccCCchhhhhhhh
Q psy6940 81 ITTHYIEEARQ-ANTVFGGFFAPKLHLSLNESELLVYKT 118 (123)
Q Consensus 81 ivtH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~~~~ 118 (123)
.|-||++.+.. ||+++. +-+|+..+...+...+....
T Consensus 196 ~VLHDLNLAA~YaDrivl-l~~Grv~a~g~p~~vlt~Et 233 (259)
T COG4559 196 AVLHDLNLAAQYADRIVL-LHQGRVIASGSPQDVLTDET 233 (259)
T ss_pred EEEccchHHHHhhheeee-eeCCeEeecCCHHHhcCHHH
Confidence 99999999987 999985 56788888887777765433
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.85 E-value=4.9e-21 Score=136.86 Aligned_cols=70 Identities=30% Similarity=0.388 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hcceee
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVFG 97 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~~ 97 (123)
.+||+||+||++||||++.+|+++++||||+|||+..+..+.+.++++ +.|||++||+++++.. ||+++.
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~~ 139 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKIIE 139 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEEE
Confidence 349999999999999999999999999999999999999999999876 4699999999999987 999873
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.85 E-value=3.9e-21 Score=164.86 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=78.1
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++.+++. +..++++.+|||||||||+||++++.+|++|||||||++||+.++..+.+.++++ +.|||+||||.
T Consensus 421 ~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~ 497 (635)
T PRK11147 421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR 497 (635)
T ss_pred HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH
Confidence 4567777774 5678999999999999999999999999999999999999999999999998875 34999999999
Q ss_pred HHHHh-hcceee
Q psy6940 87 EEARQ-ANTVFG 97 (123)
Q Consensus 87 ~~~~~-~d~v~~ 97 (123)
+++.. ||+++.
T Consensus 498 ~~~~~~~d~i~~ 509 (635)
T PRK11147 498 QFVDNTVTECWI 509 (635)
T ss_pred HHHHHhcCEEEE
Confidence 99988 999873
No 319
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.85 E-value=8e-21 Score=146.09 Aligned_cols=82 Identities=23% Similarity=0.246 Sum_probs=72.7
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhc
Q psy6940 18 ALRKLLPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQAN 93 (123)
Q Consensus 18 ~~~~~~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d 93 (123)
+..+.++.+||+|||||++||+|++ .+|+++++||||++||+..+..+.+.++++. +|.|||++||+.+....||
T Consensus 158 ~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d 236 (251)
T cd03273 158 GVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNAN 236 (251)
T ss_pred HhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCC
Confidence 4567899999999999999999998 5789999999999999999999999999885 5889999999966666699
Q ss_pred ceeeecc
Q psy6940 94 TVFGGFF 100 (123)
Q Consensus 94 ~v~~~~~ 100 (123)
++++.-+
T Consensus 237 ~v~~~~~ 243 (251)
T cd03273 237 VLFRTRF 243 (251)
T ss_pred EEEEEEe
Confidence 9986544
No 320
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.85 E-value=6.6e-21 Score=143.57 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=74.8
Q ss_pred CcchhcCCCCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 15 RDFALRKLLPNWTVGGQVRRVSIAVTLLH----------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 15 ~l~~~~~~~~~~LSgGqrqrv~iaraL~~----------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++..+.++++.+||+||+||+++|+|++. +|+++|+||||++||+..+..+.+.+.+++++|.|||++||
T Consensus 112 ~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH 191 (213)
T cd03279 112 EFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISH 191 (213)
T ss_pred chHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 45677899999999999999999999985 57899999999999999999999999998877899999999
Q ss_pred CHHHHHh-hccee
Q psy6940 85 YIEEARQ-ANTVF 96 (123)
Q Consensus 85 ~~~~~~~-~d~v~ 96 (123)
+++++.. ||+++
T Consensus 192 ~~~~~~~~~~~i~ 204 (213)
T cd03279 192 VEELKERIPQRLE 204 (213)
T ss_pred chHHHHhhCcEEE
Confidence 9999988 77776
No 321
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.85 E-value=1.1e-20 Score=148.70 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYL-NRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l-~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
.++.+||+|||||++||||++.+|+++||||||+|||+..+..+.+.+ ..+. ++.|||++||+++++..||+++. +.
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~-l~ 232 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILI-LH 232 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEE-EE
Confidence 346799999999999999999999999999999999999999998865 4554 57899999999999866998872 34
Q ss_pred cccccccCC
Q psy6940 101 APKLHLSLN 109 (123)
Q Consensus 101 ~~~~~~~~~ 109 (123)
.|+......
T Consensus 233 ~G~i~~~g~ 241 (282)
T cd03291 233 EGSSYFYGT 241 (282)
T ss_pred CCEEEEECC
Confidence 454443333
No 322
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=6e-21 Score=161.54 Aligned_cols=92 Identities=25% Similarity=0.338 Sum_probs=78.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
+....+||||||||++||||++++|+++||||||++||+...+.+.+.++++. +|+|+|++||+++.+..||+++. +-
T Consensus 446 ~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~-l~ 523 (569)
T PRK10789 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILV-MQ 523 (569)
T ss_pred cCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEE-Ee
Confidence 34567899999999999999999999999999999999999999999998875 68999999999998877999873 34
Q ss_pred cccccccCCchhhh
Q psy6940 101 APKLHLSLNESELL 114 (123)
Q Consensus 101 ~~~~~~~~~~~~~~ 114 (123)
.|+.....+.+++.
T Consensus 524 ~G~i~~~g~~~~l~ 537 (569)
T PRK10789 524 HGHIAQRGNHDQLA 537 (569)
T ss_pred CCEEEEecCHHHHH
Confidence 55555555555543
No 323
>PLN03073 ABC transporter F family; Provisional
Probab=99.85 E-value=4.9e-21 Score=166.75 Aligned_cols=86 Identities=27% Similarity=0.320 Sum_probs=77.0
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.++++.+++. ...++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||.
T Consensus 325 ~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~ 401 (718)
T PLN03073 325 ASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAR 401 (718)
T ss_pred HHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCH
Confidence 3455666664 4568899999999999999999999999999999999999999999999999875 67999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 402 ~~l~~~~d~i~ 412 (718)
T PLN03073 402 EFLNTVVTDIL 412 (718)
T ss_pred HHHHHhCCEEE
Confidence 99988 99988
No 324
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.85 E-value=5.9e-21 Score=164.65 Aligned_cols=92 Identities=28% Similarity=0.406 Sum_probs=78.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
.....+||||||||++||||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+++. +-
T Consensus 588 ~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~-l~ 665 (694)
T TIGR01846 588 GEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRIIV-LE 665 (694)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEEE-Ee
Confidence 34567899999999999999999999999999999999999999999999875 57999999999999878999873 33
Q ss_pred cccccccCCchhhh
Q psy6940 101 APKLHLSLNESELL 114 (123)
Q Consensus 101 ~~~~~~~~~~~~~~ 114 (123)
.|+....++.+++.
T Consensus 666 ~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 666 KGQIAESGRHEELL 679 (694)
T ss_pred CCEEEEeCCHHHHH
Confidence 55555555555543
No 325
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=9.5e-21 Score=135.94 Aligned_cols=71 Identities=45% Similarity=0.643 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~~ 97 (123)
||+||+||++||++++.+|+++++||||+|||+.++..+.+.+.++...+.|++++||+++++.. ||+++.
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~ 152 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIV 152 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999987668999999999999998 798873
No 326
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.84 E-value=1e-20 Score=159.79 Aligned_cols=90 Identities=24% Similarity=0.327 Sum_probs=75.5
Q ss_pred HHHHHHcCcchhcCCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHhhCCcEEE
Q psy6940 8 AEILTRTRDFALRKLL------PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLN-RLSVQGQTII 80 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~------~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~-~l~~~g~tvi 80 (123)
.++++.+++.+..+.. ..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+. .+..+|+|+|
T Consensus 446 ~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tii 525 (555)
T TIGR01194 446 QQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTII 525 (555)
T ss_pred HHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3567777776544332 36799999999999999999999999999999999999999988654 4555689999
Q ss_pred EEeCCHHHHHhhcceee
Q psy6940 81 ITTHYIEEARQANTVFG 97 (123)
Q Consensus 81 ivtH~~~~~~~~d~v~~ 97 (123)
++||+++.+..||+++.
T Consensus 526 iisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 526 IISHDDQYFELADQIIK 542 (555)
T ss_pred EEeccHHHHHhCCEEEE
Confidence 99999988777999983
No 327
>KOG0055|consensus
Probab=99.84 E-value=7.8e-21 Score=170.84 Aligned_cols=91 Identities=29% Similarity=0.396 Sum_probs=81.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
....+||||||||++|||||+++|++|+|||||++||+.+.+.+.+.|.+.. +|+|.|+|+|++..+.++|+++. +-+
T Consensus 485 e~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrnaD~I~v-~~~ 562 (1228)
T KOG0055|consen 485 ERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNADKIAV-MEE 562 (1228)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhccCEEEE-EEC
Confidence 4455699999999999999999999999999999999999999999998754 68999999999999999888874 678
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|+.+..++.+|+.
T Consensus 563 G~IvE~G~h~ELi 575 (1228)
T KOG0055|consen 563 GKIVEQGTHDELI 575 (1228)
T ss_pred CEEEEecCHHHHH
Confidence 8888888888876
No 328
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.84 E-value=8.3e-21 Score=163.69 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=76.3
Q ss_pred HHHHHHcCcchhcCCC---------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcE
Q psy6940 8 AEILTRTRDFALRKLL---------PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT 78 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~---------~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~t 78 (123)
.++++.+++.++.+++ +.+||||||||++||||++++|+++||||||++||+...+.+.+.+++ .|.|
T Consensus 555 ~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~t 631 (659)
T TIGR00954 555 EQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGIT 631 (659)
T ss_pred HHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCE
Confidence 4567788887666554 379999999999999999999999999999999999999999988865 3899
Q ss_pred EEEEeCCHHHHHhhcceee
Q psy6940 79 IIITTHYIEEARQANTVFG 97 (123)
Q Consensus 79 viivtH~~~~~~~~d~v~~ 97 (123)
+|++||+++.+..||+++.
T Consensus 632 vI~isH~~~~~~~~d~il~ 650 (659)
T TIGR00954 632 LFSVSHRKSLWKYHEYLLY 650 (659)
T ss_pred EEEEeCchHHHHhCCEEEE
Confidence 9999999999877999983
No 329
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.84 E-value=1.3e-20 Score=158.67 Aligned_cols=90 Identities=26% Similarity=0.345 Sum_probs=76.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
.....||||||||++||||++.+|+++||||||++||+.+.+.+++.++++. +++|+|++||+++.+..||+++. +-.
T Consensus 472 ~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~-l~~ 549 (576)
T TIGR02204 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVV-MDQ 549 (576)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEE-EEC
Confidence 3456799999999999999999999999999999999999999999999875 58999999999988877999973 335
Q ss_pred ccccccCCchhh
Q psy6940 102 PKLHLSLNESEL 113 (123)
Q Consensus 102 ~~~~~~~~~~~~ 113 (123)
|+.....+.+++
T Consensus 550 g~~~~~g~~~~l 561 (576)
T TIGR02204 550 GRIVAQGTHAEL 561 (576)
T ss_pred CEEEeeecHHHH
Confidence 555555555544
No 330
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.84 E-value=4.9e-21 Score=165.93 Aligned_cols=88 Identities=24% Similarity=0.358 Sum_probs=73.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++||||++++|+++||||||++||+...+.+.+ .. ..+++|+|+|||+++.+..||+|+. +-.|
T Consensus 614 ~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~Iiv-L~~G 689 (711)
T TIGR00958 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILV-LKKG 689 (711)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEE-EECC
Confidence 346799999999999999999999999999999999999988888 22 2358999999999999888999984 3356
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+....++.+++.
T Consensus 690 ~ive~Gt~~eL~ 701 (711)
T TIGR00958 690 SVVEMGTHKQLM 701 (711)
T ss_pred EEEEeeCHHHHH
Confidence 666666666654
No 331
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.84 E-value=1.3e-20 Score=162.65 Aligned_cols=90 Identities=31% Similarity=0.380 Sum_probs=77.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++ +|+|+|++||+++.+..||+++. +-.
T Consensus 607 e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~-l~~ 683 (708)
T TIGR01193 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIV-LDH 683 (708)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEE-EEC
Confidence 345779999999999999999999999999999999999999999999875 47899999999998877999984 335
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|+....++..++.
T Consensus 684 G~i~~~G~~~~L~ 696 (708)
T TIGR01193 684 GKIIEQGSHDELL 696 (708)
T ss_pred CEEEEECCHHHHH
Confidence 6666566665554
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.84 E-value=1.4e-20 Score=158.60 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=74.8
Q ss_pred HHHHHHcCcchhcCCC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEE
Q psy6940 8 AEILTRTRDFALRKLL-----PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIII 81 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~-----~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvii 81 (123)
.++++.+++....+.. ..+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+..+ .|+|+|+
T Consensus 426 ~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~ 505 (547)
T PRK10522 426 EKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFA 505 (547)
T ss_pred HHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3456666665433221 358999999999999999999999999999999999999999998876543 5899999
Q ss_pred EeCCHHHHHhhcceee
Q psy6940 82 TTHYIEEARQANTVFG 97 (123)
Q Consensus 82 vtH~~~~~~~~d~v~~ 97 (123)
+||+++.+..||+++.
T Consensus 506 itH~~~~~~~~d~i~~ 521 (547)
T PRK10522 506 ISHDDHYFIHADRLLE 521 (547)
T ss_pred EEechHHHHhCCEEEE
Confidence 9999988777999983
No 333
>PLN03140 ABC transporter G family member; Provisional
Probab=99.84 E-value=1.8e-20 Score=172.74 Aligned_cols=90 Identities=28% Similarity=0.367 Sum_probs=82.6
Q ss_pred HHHHHHHcCcchhcCCCC-----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEE
Q psy6940 7 PAEILTRTRDFALRKLLP-----NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~-----~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvii 81 (123)
.+++++.+++.+..+.++ ..|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++++|+|||+
T Consensus 995 v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~ 1074 (1470)
T PLN03140 995 VDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1074 (1470)
T ss_pred HHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 457889999988888876 589999999999999999999999999999999999999999999999888999999
Q ss_pred EeCCHHH-HHh-hccee
Q psy6940 82 TTHYIEE-ARQ-ANTVF 96 (123)
Q Consensus 82 vtH~~~~-~~~-~d~v~ 96 (123)
++|+++. +.. ||+++
T Consensus 1075 t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140 1075 TIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred EeCCCCHHHHHhCCEEE
Confidence 9999984 555 99988
No 334
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=155.60 Aligned_cols=102 Identities=29% Similarity=0.304 Sum_probs=90.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++.+++|+.--.+.++.+||-|+||||.|.+||.++|++|||||||+-|-|...+++++.++.++++|+|||+|||.+
T Consensus 121 i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL 200 (501)
T COG3845 121 IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL 200 (501)
T ss_pred HHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH
Confidence 45677888887778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcceeeecccccccccCC
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+++.. |||+.. +-.||.+.+.+
T Consensus 201 ~Ev~~iaDrvTV-LR~Gkvvgt~~ 223 (501)
T COG3845 201 KEVMAIADRVTV-LRRGKVVGTVD 223 (501)
T ss_pred HHHHHhhCeeEE-EeCCeEEeeec
Confidence 99999 999873 33444444443
No 335
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1.6e-20 Score=157.49 Aligned_cols=111 Identities=21% Similarity=0.290 Sum_probs=92.1
Q ss_pred HHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 9 EILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 9 e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+..+++++. .-.+.++.+||||.||||.|||.|+.+|++|||||||.|+|..++.+|+++|++++++|++||++|.++.
T Consensus 383 ~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp 462 (500)
T COG1129 383 RYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP 462 (500)
T ss_pred HHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH
Confidence 344555543 3446889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-hcceeeecccccccccCCchhhhhhhhhh
Q psy6940 88 EARQ-ANTVFGGFFAPKLHLSLNESELLVYKTVE 120 (123)
Q Consensus 88 ~~~~-~d~v~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (123)
++.. ||||+. +..|+....+...+....++++
T Consensus 463 Ell~~~DRIlV-m~~Gri~~e~~~~~~tee~im~ 495 (500)
T COG1129 463 ELLGLSDRILV-MREGRIVGELDREEATEEAIMA 495 (500)
T ss_pred HHHhhCCEEEE-EECCEEEEEeccccCCHHHHHH
Confidence 9998 999984 4566666655555554444444
No 336
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=3.7e-20 Score=142.36 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHS----PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~----p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
.++.+||+|||||++||++++.+ |+++|+||||+|||+..+..+.+.|.+++++|.+||++||+.+.+..||++++
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~ 230 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVG 230 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEE
Confidence 44599999999999999999875 89999999999999999999999999988679999999999887766999986
Q ss_pred eccccccccc
Q psy6940 98 GFFAPKLHLS 107 (123)
Q Consensus 98 ~~~~~~~~~~ 107 (123)
-.-.+.+..+
T Consensus 231 ~~~~~~~~~~ 240 (247)
T cd03275 231 VYRDQECNSS 240 (247)
T ss_pred EEecCCCCcc
Confidence 5545554443
No 337
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.83 E-value=2.4e-20 Score=172.03 Aligned_cols=76 Identities=34% Similarity=0.487 Sum_probs=71.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCCHHHHHhhccee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~~~~~~~~d~v~ 96 (123)
+..+.+||||||||++||||++++|++|||||||++||+.....+.+.|+++.+ +|+|+|+|||+++.+..||+++
T Consensus 574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Ii 650 (1466)
T PTZ00265 574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIF 650 (1466)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEE
Confidence 456789999999999999999999999999999999999999999999999875 5899999999999986799988
No 338
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.83 E-value=3.2e-20 Score=170.53 Aligned_cols=90 Identities=27% Similarity=0.343 Sum_probs=82.4
Q ss_pred HHHHHHHcCcchhcCCCCC----CCCHHHHHHHHHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEE
Q psy6940 7 PAEILTRTRDFALRKLLPN----WTVGGQVRRVSIAVTLLHSPS-LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~----~LSgGqrqrv~iaraL~~~p~-lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvii 81 (123)
.+++++.+++.+..++.++ .|||||||||+||++|+.+|+ +++|||||+|||+.++..+.+.|++++++|+|||+
T Consensus 878 v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~ 957 (1394)
T TIGR00956 878 VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957 (1394)
T ss_pred HHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3578889999888888887 799999999999999999997 99999999999999999999999999878999999
Q ss_pred EeCCHHHH-Hh-hccee
Q psy6940 82 TTHYIEEA-RQ-ANTVF 96 (123)
Q Consensus 82 vtH~~~~~-~~-~d~v~ 96 (123)
++|+++.. .. +|+++
T Consensus 958 t~H~~~~~~~~~~D~vl 974 (1394)
T TIGR00956 958 TIHQPSAILFEEFDRLL 974 (1394)
T ss_pred EecCCCHHHHHhcCEEE
Confidence 99999864 34 99987
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.83 E-value=2.2e-20 Score=171.64 Aligned_cols=105 Identities=20% Similarity=0.139 Sum_probs=86.7
Q ss_pred HHHHHHcCcchhcCCC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEE
Q psy6940 8 AEILTRTRDFALRKLL-----PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIII 81 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~-----~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvii 81 (123)
+++++.+++.+.++++ +..|||||||||+||++|+.+|++++|||||+|||+..+..+.+.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3467888988777654 5679999999999999999999999999999999999999999999999865 999999
Q ss_pred EeCCH-HHHHh-hcceeeecccccccccCCchhh
Q psy6940 82 TTHYI-EEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 82 vtH~~-~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++|++ +.+.. +|+++. +..|+........+.
T Consensus 266 ~~Hq~~~~i~~l~D~v~~-L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIV-LYEGYQIYFGPADKA 298 (1394)
T ss_pred EecCCCHHHHHhhceEEE-EeCCeEEEECCHHHH
Confidence 99997 56766 999983 334555444444444
No 340
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.83 E-value=4.5e-20 Score=164.37 Aligned_cols=107 Identities=23% Similarity=0.259 Sum_probs=91.9
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p---~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.+.++.+++.. ..++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..+.+.|+++.++|.|||++|
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit 890 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE 890 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45566677765 468899999999999999999999999 99999999999999999999999999987899999999
Q ss_pred CCHHHHHhhcceee-----ecccccccccCCchhhh
Q psy6940 84 HYIEEARQANTVFG-----GFFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~~d~v~~-----~~~~~~~~~~~~~~~~~ 114 (123)
|+++.+..||+++. |-..|+.....++.++.
T Consensus 891 H~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 891 HNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred cCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999877999882 23577777776666654
No 341
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.82 E-value=4.5e-20 Score=140.35 Aligned_cols=83 Identities=23% Similarity=0.226 Sum_probs=70.8
Q ss_pred chhcCCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhh
Q psy6940 17 FALRKLLPNWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQA 92 (123)
Q Consensus 17 ~~~~~~~~~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~ 92 (123)
.+..+.++.+||||||||++||+|++. +|+++++||||+|||+..++.+++.++++.+ +.+||++||+.+....|
T Consensus 149 ~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~ 227 (243)
T cd03272 149 KQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVA 227 (243)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhC
Confidence 334568899999999999999999973 5899999999999999999999999999865 78899999987654449
Q ss_pred cceeeecc
Q psy6940 93 NTVFGGFF 100 (123)
Q Consensus 93 d~v~~~~~ 100 (123)
|+++.-.+
T Consensus 228 d~i~~l~~ 235 (243)
T cd03272 228 DKFYGVKF 235 (243)
T ss_pred CEEEEEEE
Confidence 99985444
No 342
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=4.6e-20 Score=170.10 Aligned_cols=91 Identities=27% Similarity=0.395 Sum_probs=77.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
....||||||||++|||||+++|++||||||||+||+.+.+.+.+.|.++. .+++|+|+|+|++..+..||+|+. +-.
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivv-l~~ 1433 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV-FNN 1433 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEE-EeC
Confidence 456799999999999999999999999999999999999999999999875 358999999999999988999984 223
Q ss_pred ----cccc-ccCCchhhh
Q psy6940 102 ----PKLH-LSLNESELL 114 (123)
Q Consensus 102 ----~~~~-~~~~~~~~~ 114 (123)
|+.. ..++.++++
T Consensus 1434 ~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1434 PDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred CCCCCCEEEEecCHHHHH
Confidence 5532 455555554
No 343
>KOG0058|consensus
Probab=99.82 E-value=1.8e-20 Score=161.47 Aligned_cols=98 Identities=31% Similarity=0.383 Sum_probs=79.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
..+..+||||||||++|||||++||++|||||.||+||.++...+.+.+.+.. +++|||+|.|.+..++.||+|+. +-
T Consensus 599 GEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~-~~rTVlvIAHRLSTV~~Ad~Ivv-i~ 676 (716)
T KOG0058|consen 599 GEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM-QGRTVLVIAHRLSTVRHADQIVV-ID 676 (716)
T ss_pred CCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh-cCCeEEEEehhhhHhhhccEEEE-Ec
Confidence 44667999999999999999999999999999999999999999999998866 46999999999999999998872 22
Q ss_pred cccccccCCchh------hhhhhhhh
Q psy6940 101 APKLHLSLNESE------LLVYKTVE 120 (123)
Q Consensus 101 ~~~~~~~~~~~~------~~~~~~~~ 120 (123)
.|+....++-++ .+++++++
T Consensus 677 ~G~V~E~G~h~eLl~~~~gly~~Lv~ 702 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLSKPNGLYAKLVQ 702 (716)
T ss_pred CCeEEecccHHHHhhCcccHHHHHHH
Confidence 334433333333 45666664
No 344
>PLN03232 ABC transporter C family member; Provisional
Probab=99.82 E-value=6.4e-20 Score=169.38 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=80.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|+. +-.|
T Consensus 1368 ~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlV-L~~G 1445 (1495)
T PLN03232 1368 GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILV-LSSG 1445 (1495)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEE-EECC
Confidence 446899999999999999999999999999999999999999999998864 57999999999999999999995 4467
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+.....++.+++
T Consensus 1446 ~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1446 QVLEYDSPQELL 1457 (1495)
T ss_pred EEEEECCHHHHH
Confidence 777777777765
No 345
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=3.2e-20 Score=157.14 Aligned_cols=87 Identities=32% Similarity=0.368 Sum_probs=77.4
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
++..++..+++... ++++++||||||.||+||+||..+|++|+|||||+.||..+...+-+.|.++ +| |||+||||
T Consensus 134 ~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD 209 (530)
T COG0488 134 RAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD 209 (530)
T ss_pred HHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC
Confidence 34556666776666 8999999999999999999999999999999999999999999998888764 36 99999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
..++.. |++|+
T Consensus 210 R~FLd~V~t~I~ 221 (530)
T COG0488 210 RYFLDNVATHIL 221 (530)
T ss_pred HHHHHHHhhheE
Confidence 999999 88888
No 346
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=5.2e-20 Score=145.16 Aligned_cols=101 Identities=24% Similarity=0.272 Sum_probs=87.5
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
++.-+.+++.+..+.+++.||-|||.|+.+|.+|+++|++++|||||-|||..++..+.+.+++.+++ +.||+++||++
T Consensus 138 ~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~ 217 (325)
T COG4586 138 DFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF 217 (325)
T ss_pred HHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch
Confidence 34556677888899999999999999999999999999999999999999999999999999999865 99999999999
Q ss_pred HHHHh-hcceeeecccccccccCC
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLN 109 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~ 109 (123)
+.+.. ||||+. +-.|+...+.+
T Consensus 218 ~di~~lc~rv~~-I~~Gqlv~dg~ 240 (325)
T COG4586 218 DDIATLCDRVLL-IDQGQLVFDGT 240 (325)
T ss_pred hhHHHhhhheEE-eeCCcEeeccc
Confidence 99999 999993 22444444433
No 347
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=3.9e-20 Score=138.73 Aligned_cols=80 Identities=20% Similarity=0.091 Sum_probs=72.2
Q ss_pred chhcCCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC---CcEEEEEeCCHHHH
Q psy6940 17 FALRKLLPNWTVGGQVRRVSIAVTL----LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ---GQTIIITTHYIEEA 89 (123)
Q Consensus 17 ~~~~~~~~~~LSgGqrqrv~iaraL----~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~---g~tviivtH~~~~~ 89 (123)
.+..++++.+||+|||||++||+|+ +.+|+++||||||+|||+..+..+.+.|.++..+ +.|||++||+++++
T Consensus 100 ~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i 179 (198)
T cd03276 100 NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGL 179 (198)
T ss_pred ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccc
Confidence 5667889999999999999999999 5899999999999999999999999999887543 46899999999999
Q ss_pred Hhhccee
Q psy6940 90 RQANTVF 96 (123)
Q Consensus 90 ~~~d~v~ 96 (123)
..+|+|.
T Consensus 180 ~~~d~v~ 186 (198)
T cd03276 180 ASSDDVK 186 (198)
T ss_pred cccccee
Confidence 8888775
No 348
>KOG0059|consensus
Probab=99.82 E-value=4.1e-20 Score=163.91 Aligned_cols=107 Identities=30% Similarity=0.441 Sum_probs=97.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+..++.+++.+.++++++.+|||+|+|+++|.|++.+|++++|||||+|+||.+++.+++++.+++++|+.||++||.+
T Consensus 679 v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM 758 (885)
T KOG0059|consen 679 IEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM 758 (885)
T ss_pred HHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 46778889999999999999999999999999999999999999999999999999999999999998877999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++. |||+. .+..|+.-..++++++.
T Consensus 759 eE~EaLCtR~a-Imv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 759 EEAEALCTRTA-IMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHhhhhh-eeecCeeEEecChHHHH
Confidence 99999 99976 36677777777776665
No 349
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=9.4e-20 Score=162.10 Aligned_cols=105 Identities=25% Similarity=0.262 Sum_probs=89.6
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLH---SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~---~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.. ..++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+.+.|.++.++|.|||++|
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~ 888 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE 888 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45667777764 4688999999999999999999997 5999999999999999999999999999987899999999
Q ss_pred CCHHHHHhhcceee-----ecccccccccCCchh
Q psy6940 84 HYIEEARQANTVFG-----GFFAPKLHLSLNESE 112 (123)
Q Consensus 84 H~~~~~~~~d~v~~-----~~~~~~~~~~~~~~~ 112 (123)
|+++.+..||+++. |...|+.....++++
T Consensus 889 H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 889 HNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred CCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHH
Confidence 99999877999982 335777766655544
No 350
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=8.3e-20 Score=169.66 Aligned_cols=106 Identities=29% Similarity=0.373 Sum_probs=91.4
Q ss_pred HHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 9 EILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLL---HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 9 e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~---~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++++.+++..+ .++++.+|||||+||++||++|+ .+|+++||||||+|||+..++.+++.|.+++++|.|||++||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35677888776 79999999999999999999997 699999999999999999999999999999888999999999
Q ss_pred CHHHHHhhcceee-----ecccccccccCCchhhh
Q psy6940 85 YIEEARQANTVFG-----GFFAPKLHLSLNESELL 114 (123)
Q Consensus 85 ~~~~~~~~d~v~~-----~~~~~~~~~~~~~~~~~ 114 (123)
+++++..||+++. +...|+.....+++++.
T Consensus 871 dl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 871 NMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999944999972 23467777676666554
No 351
>KOG0055|consensus
Probab=99.82 E-value=2.2e-20 Score=167.99 Aligned_cols=100 Identities=25% Similarity=0.351 Sum_probs=83.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
..+..+||||||||+|||||+++||++|+|||.||+||.++.+.+.+.|.+.. +|+|.|+|.|.+..+.+||.|+. +-
T Consensus 1121 GerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~V-i~ 1198 (1228)
T KOG0055|consen 1121 GERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAV-LK 1198 (1228)
T ss_pred CcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEE-EE
Confidence 34667999999999999999999999999999999999999999999998855 68999999999999999998873 33
Q ss_pred cccccccCCc-----hhhhhhhhhhcC
Q psy6940 101 APKLHLSLNE-----SELLVYKTVELS 122 (123)
Q Consensus 101 ~~~~~~~~~~-----~~~~~~~~~~~~ 122 (123)
+|+....++- ....+|++++.-
T Consensus 1199 ~G~VvE~GtH~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1199 NGKVVEQGTHDELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred CCEEEecccHHHHHhCCCchHHHhhhc
Confidence 4444444444 444578888753
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=99.82 E-value=1e-19 Score=169.02 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|+. +-+|
T Consensus 1371 ~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlV-Ld~G 1448 (1622)
T PLN03130 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILV-LDAG 1448 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEE-EECC
Confidence 345899999999999999999999999999999999999999999999865 58999999999999999999984 4577
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+.....++.+++
T Consensus 1449 ~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1449 RVVEFDTPENLL 1460 (1622)
T ss_pred EEEEeCCHHHHH
Confidence 777777777775
No 353
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.81 E-value=5.7e-20 Score=153.73 Aligned_cols=63 Identities=29% Similarity=0.423 Sum_probs=57.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.++. +++|+|++||++
T Consensus 467 ~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 467 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 346799999999999999999999999999999999999999999998754 579999999974
No 354
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=1.2e-19 Score=168.52 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=87.2
Q ss_pred HHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 10 ILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 10 ~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+..+++..+ .++++.+|||||+|||.||++|+.+| +++||||||+|||+..++.+.+.|++++++|.|||+|||++
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 3455666666 58999999999999999999999999 89999999999999999999999999988899999999999
Q ss_pred HHHHhhcceee-----ecccccccccCCchhh
Q psy6940 87 EEARQANTVFG-----GFFAPKLHLSLNESEL 113 (123)
Q Consensus 87 ~~~~~~d~v~~-----~~~~~~~~~~~~~~~~ 113 (123)
+.+..||+++. |...|+.....+..++
T Consensus 539 ~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 539 QMISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred HHHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 95544999983 2346666655555444
No 355
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.81 E-value=1.4e-19 Score=136.23 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=72.3
Q ss_pred hcCCCCCCCCHHHHHH------HHHHHHHhcCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHhhC-CcEEEEEeCCHHHHH
Q psy6940 19 LRKLLPNWTVGGQVRR------VSIAVTLLHSPSLVILDEPTSGLDPVLAN-IFWRYLNRLSVQ-GQTIIITTHYIEEAR 90 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqr------v~iaraL~~~p~lliLDEPt~gLD~~~~~-~i~~~l~~l~~~-g~tviivtH~~~~~~ 90 (123)
..++++.+||+||+|| +++|++++.+|+++++||||++||+..+. .+.+++.+++++ |.|||++||+++.+.
T Consensus 108 ~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 108 PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 3377899999999996 78999999999999999999999999999 999999998766 889999999998876
Q ss_pred hhcceeee
Q psy6940 91 QANTVFGG 98 (123)
Q Consensus 91 ~~d~v~~~ 98 (123)
.||+++.-
T Consensus 188 ~~d~i~~l 195 (204)
T cd03240 188 AADHIYRV 195 (204)
T ss_pred hCCEEEEE
Confidence 69998843
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.80 E-value=2.8e-19 Score=165.34 Aligned_cols=90 Identities=20% Similarity=0.171 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++||||++++|+++||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|+. +-.|
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlV-ld~G 1495 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIV-LDKG 1495 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEE-EECC
Confidence 446799999999999999999999999999999999999999999998764 57999999999999999999995 4477
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+.....++.+++
T Consensus 1496 ~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1496 EVAEFGAPSNLL 1507 (1522)
T ss_pred EEEEECCHHHHH
Confidence 777778888776
No 357
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.80 E-value=1.7e-19 Score=136.59 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=77.8
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++.+.+++.+..++++..||+|||||++||+|++. +|+++++||||+|||+..+..+.+.+++++ ++.|+|++|
T Consensus 109 ~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs 187 (212)
T cd03274 109 GEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVIS 187 (212)
T ss_pred CcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEE
Confidence 345566677777888999999999999999999974 479999999999999999999999999975 467899999
Q ss_pred CCHHHHHhhcceeeeccc
Q psy6940 84 HYIEEARQANTVFGGFFA 101 (123)
Q Consensus 84 H~~~~~~~~d~v~~~~~~ 101 (123)
|+.+....||+++.--..
T Consensus 188 ~~~~~~~~~d~v~~~~~~ 205 (212)
T cd03274 188 LRNNMFELADRLVGIYKT 205 (212)
T ss_pred CcHHHHHhCCEEEEEEec
Confidence 997555459999864443
No 358
>KOG0057|consensus
Probab=99.80 E-value=2.2e-19 Score=151.24 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=80.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
..+...|||||||||++|||++.+|+++++|||||+||..+.+.+++.+.+ ...|+|+|+|-|+++.+..||+|+. +.
T Consensus 482 GerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~-l~ 559 (591)
T KOG0057|consen 482 GERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIV-LD 559 (591)
T ss_pred hhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEE-EE
Confidence 345667999999999999999999999999999999999999999999988 4468999999999999999999984 55
Q ss_pred cccccccCCchhhhh
Q psy6940 101 APKLHLSLNESELLV 115 (123)
Q Consensus 101 ~~~~~~~~~~~~~~~ 115 (123)
.|+...-.+-++++.
T Consensus 560 nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 560 NGTVKEYGTHSELLA 574 (591)
T ss_pred CCeeEEeccHHHHhh
Confidence 666666666666664
No 359
>KOG0061|consensus
Probab=99.80 E-value=1.8e-19 Score=154.76 Aligned_cols=107 Identities=34% Similarity=0.396 Sum_probs=89.7
Q ss_pred CHHHHHHHcCcchhcCCCCCC-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEE
Q psy6940 6 RPAEILTRTRDFALRKLLPNW-----TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII 80 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~-----LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 80 (123)
+.+++++.+++...+|..+++ +||||||||+||.-+++||+++++||||+|||.....++.+.+++++++|+|||
T Consensus 145 ~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi 224 (613)
T KOG0061|consen 145 RVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVI 224 (613)
T ss_pred HHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEE
Confidence 457889999999888888874 999999999999999999999999999999999999999999999998899999
Q ss_pred EEeCCHH-HHHh-hcceeeecccccccccCCchhh
Q psy6940 81 ITTHYIE-EARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 81 ivtH~~~-~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++-|.+. .+.+ .|+++- +..|+..-.+.+.++
T Consensus 225 ~tIHQPss~lf~lFD~l~l-Ls~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 225 CTIHQPSSELFELFDKLLL-LSEGEVVYSGSPREL 258 (613)
T ss_pred EEEeCCcHHHHHHHhHhhh-hcCCcEEEecCHHHH
Confidence 9999986 3445 888872 234444444444433
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.80 E-value=4.2e-19 Score=164.01 Aligned_cols=104 Identities=18% Similarity=0.266 Sum_probs=86.5
Q ss_pred HHHHHcCcchhcCCC-----------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc
Q psy6940 9 EILTRTRDFALRKLL-----------PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77 (123)
Q Consensus 9 e~l~~~~l~~~~~~~-----------~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~ 77 (123)
++++++++.+.-... ..+||||||||++|||||+++|++|||||||++||+.....+.+.|++.. +++
T Consensus 1325 ~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~ 1403 (1490)
T TIGR01271 1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNC 1403 (1490)
T ss_pred HHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCC
Confidence 456777765433222 34799999999999999999999999999999999999999999998864 479
Q ss_pred EEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 78 TIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 78 tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|||+|+|+++.+..||+|+. +-.|+.....++.+++
T Consensus 1404 TvI~IaHRl~ti~~~DrIlv-L~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLV-IEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEE-EECCEEEEeCCHHHHH
Confidence 99999999999988999984 4567777777777765
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.4e-19 Score=132.23 Aligned_cols=91 Identities=31% Similarity=0.410 Sum_probs=82.2
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+.++++++.+. ...|..|.++|||||||+.|||-|+..|+++++||||.|||...+.++.++++.+..+ |.+++++||
T Consensus 131 a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTH 210 (258)
T COG4107 131 AQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred HHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEec
Confidence 34677777754 4568899999999999999999999999999999999999999999999999999877 999999999
Q ss_pred CHHHHHh-hcceee
Q psy6940 85 YIEEARQ-ANTVFG 97 (123)
Q Consensus 85 ~~~~~~~-~d~v~~ 97 (123)
|+..+.- ++|.+.
T Consensus 211 Dl~VarLla~rlmv 224 (258)
T COG4107 211 DLAVARLLADRLMV 224 (258)
T ss_pred hhHHHHHhhhccee
Confidence 9999987 888874
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=3.7e-19 Score=132.78 Aligned_cols=89 Identities=24% Similarity=0.275 Sum_probs=81.1
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeCC
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH~ 85 (123)
.+.++++++.+ ..++++.+||||||||++++|-|..-|++++|||||++||+.+++.+-++|.++. .+.++++++|||
T Consensus 114 ~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd 193 (223)
T COG4619 114 LDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD 193 (223)
T ss_pred HHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecC
Confidence 35678888754 5789999999999999999999999999999999999999999999999998886 569999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
.+...+ +|+++
T Consensus 194 ~dqa~rha~k~i 205 (223)
T COG4619 194 KDQAIRHADKVI 205 (223)
T ss_pred hHHHhhhhheEE
Confidence 999766 99988
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.79 E-value=1.9e-19 Score=165.99 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=87.7
Q ss_pred HHHHHHcCcchhc-----CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEE
Q psy6940 8 AEILTRTRDFALR-----KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIII 81 (123)
Q Consensus 8 ~e~l~~~~l~~~~-----~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvii 81 (123)
+++++.+|+.+.+ +..++.+||||||||+||++++.+|+++++||||+|||+..+..+.+.|+++++ .|+|||+
T Consensus 313 ~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tvii 392 (1470)
T PLN03140 313 DYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLM 392 (1470)
T ss_pred HHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 5688889987644 567789999999999999999999999999999999999999999999999976 4899999
Q ss_pred EeCCH-HHHHh-hcceeeecccccccccCCchhhh
Q psy6940 82 TTHYI-EEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 82 vtH~~-~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++|++ .++.. +|+++. +..|+....+...+..
T Consensus 393 s~Hqp~~~i~~lfD~vil-L~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 393 SLLQPAPETFDLFDDIIL-LSEGQIVYQGPRDHIL 426 (1470)
T ss_pred EecCCCHHHHHHhheEEE-eeCceEEEeCCHHHHH
Confidence 99986 46666 999983 3455554444444443
No 364
>PTZ00243 ABC transporter; Provisional
Probab=99.79 E-value=7.3e-19 Score=162.94 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=77.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHS-PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~-p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
...+||||||||++|||||+++ |++|||||||++||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|+. +-.
T Consensus 1442 ~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlV-Ld~ 1519 (1560)
T PTZ00243 1442 GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIV-MDH 1519 (1560)
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEE-EEC
Confidence 3468999999999999999996 89999999999999999999999998854 47999999999999999999983 345
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|+.....++.+++
T Consensus 1520 G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1520 GAVAEMGSPRELV 1532 (1560)
T ss_pred CEEEEECCHHHHH
Confidence 6666666666665
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=1.3e-18 Score=161.25 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=75.8
Q ss_pred CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 15 RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 15 ~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
|+....+.++.+|||||||||+||||++.+|+++||||||++||+...+.+++.+.....+|+|+|++||+++.+..||+
T Consensus 771 g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ 850 (1560)
T PTZ00243 771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADY 850 (1560)
T ss_pred cchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence 34445577899999999999999999999999999999999999999888876442222258999999999999877999
Q ss_pred eeeecccccccccCCchh
Q psy6940 95 VFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 95 v~~~~~~~~~~~~~~~~~ 112 (123)
++. +-.|+.....+..+
T Consensus 851 ii~-l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 851 VVA-LGDGRVEFSGSSAD 867 (1560)
T ss_pred EEE-EECCEEEEecCHHH
Confidence 983 22444444444333
No 366
>PLN03232 ABC transporter C family member; Provisional
Probab=99.78 E-value=8.8e-19 Score=161.91 Aligned_cols=89 Identities=21% Similarity=0.265 Sum_probs=71.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY-LNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
...+||||||||++||||+..+|+++||||||++||+...+.+++. +... .+|+|+|++||++..+..||+|+. +-+
T Consensus 737 ~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~aD~Ii~-L~~ 814 (1495)
T PLN03232 737 RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLMDRIIL-VSE 814 (1495)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhCCEEEE-EeC
Confidence 4557999999999999999999999999999999999999888765 4443 368999999999998888999883 224
Q ss_pred ccccccCCchhh
Q psy6940 102 PKLHLSLNESEL 113 (123)
Q Consensus 102 ~~~~~~~~~~~~ 113 (123)
|+....++.+++
T Consensus 815 G~i~~~Gt~~eL 826 (1495)
T PLN03232 815 GMIKEEGTFAEL 826 (1495)
T ss_pred CEEEEecCHHHH
Confidence 444444444444
No 367
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=9e-19 Score=133.08 Aligned_cols=90 Identities=26% Similarity=0.330 Sum_probs=85.2
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+.+++++..++.+.++.....||.||||++.|++-++.+|++|++|||++|+-.....+..++++.++. +.+|++|.||
T Consensus 127 ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD 205 (249)
T COG4674 127 RIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD 205 (249)
T ss_pred HHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc
Confidence 567899999999999999999999999999999999999999999999999999999999999999874 5799999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
|.++.. +++|.
T Consensus 206 M~Fvr~~A~~VT 217 (249)
T COG4674 206 MGFVREIADKVT 217 (249)
T ss_pred HHHHHHhhheeE
Confidence 999998 99987
No 368
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.76 E-value=2.2e-18 Score=159.50 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--hCCcEEEEEeCCHHHHHhhcceeee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS--VQGQTIIITTHYIEEARQANTVFGG 98 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~--~~g~tviivtH~~~~~~~~d~v~~~ 98 (123)
+.++.+||||||||++||||+..+|++++|||||++||+...+.+++.+.+.. .+|+|+|++||+++.+..||+++.
T Consensus 755 g~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~- 833 (1522)
T TIGR00957 755 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV- 833 (1522)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEE-
Confidence 46788999999999999999999999999999999999999999999886532 357999999999999888999873
Q ss_pred cccccccccCCchh
Q psy6940 99 FFAPKLHLSLNESE 112 (123)
Q Consensus 99 ~~~~~~~~~~~~~~ 112 (123)
+-.|+.....+..+
T Consensus 834 l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 834 MSGGKISEMGSYQE 847 (1522)
T ss_pred ecCCeEEeeCCHHH
Confidence 22444444444333
No 369
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.76 E-value=5.9e-18 Score=141.96 Aligned_cols=92 Identities=23% Similarity=0.289 Sum_probs=83.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
--..||||||||+++||||..+|.+++||||-++||......+.+.|...+++|.|+|+|||.+..+..+|++.. +-+|
T Consensus 469 ~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilv-l~~G 547 (580)
T COG4618 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILV-LQDG 547 (580)
T ss_pred CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeee-ecCC
Confidence 446899999999999999999999999999999999999999999999999999999999999999999999984 5577
Q ss_pred cccccCCchhhhh
Q psy6940 103 KLHLSLNESELLV 115 (123)
Q Consensus 103 ~~~~~~~~~~~~~ 115 (123)
....+...++.+.
T Consensus 548 ~~~~FG~r~eVLa 560 (580)
T COG4618 548 RIAAFGPREEVLA 560 (580)
T ss_pred hHHhcCCHHHHHH
Confidence 7777777777764
No 370
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.75 E-value=4.8e-18 Score=157.03 Aligned_cols=90 Identities=24% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhhCCcEEEEEeCCHHHHHhhcceeeec
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY-LNRLSVQGQTIIITTHYIEEARQANTVFGGF 99 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~-l~~l~~~g~tviivtH~~~~~~~~d~v~~~~ 99 (123)
..++.+||||||||++||||++.+|+++||||||++||+...+.+++. +.++. +|+|+|++||+++.+..||+++. +
T Consensus 543 g~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii~-l 620 (1490)
T TIGR01271 543 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKILL-L 620 (1490)
T ss_pred cCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEEE-E
Confidence 345789999999999999999999999999999999999999999985 56654 58999999999999877999983 2
Q ss_pred ccccccccCCchh
Q psy6940 100 FAPKLHLSLNESE 112 (123)
Q Consensus 100 ~~~~~~~~~~~~~ 112 (123)
-.|+........+
T Consensus 621 ~~g~i~~~g~~~~ 633 (1490)
T TIGR01271 621 HEGVCYFYGTFSE 633 (1490)
T ss_pred ECCEEEEEcCHHH
Confidence 2444444434333
No 371
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.5e-18 Score=128.66 Aligned_cols=89 Identities=27% Similarity=0.377 Sum_probs=80.9
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++.++++- .++...|.++||||||||.|||+++.+-++++|||||++||..+++.+.++|.+-+..|.++|=+-||-
T Consensus 133 ~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe 212 (235)
T COG4778 133 ADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE 212 (235)
T ss_pred HHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH
Confidence 3556777764 567889999999999999999999999999999999999999999999999999888899999999998
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+.-+. |||++
T Consensus 213 evre~vadR~~ 223 (235)
T COG4778 213 EVREAVADRLL 223 (235)
T ss_pred HHHHHHhhhee
Confidence 77777 99988
No 372
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.75 E-value=1.2e-17 Score=123.56 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeec
Q psy6940 27 TVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGF 99 (123)
Q Consensus 27 LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~ 99 (123)
||+|||||+++|++++ .+|+++++|||+++||+..+..+.+.+.++.++|.|+|++||+++.+..+|+++..-
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999998766899999999998876699998543
No 373
>PLN03130 ABC transporter C family member; Provisional
Probab=99.75 E-value=6.4e-18 Score=157.18 Aligned_cols=90 Identities=21% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR-YLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
....+||||||||++||||+..+|+++||||||++||+...+.+++ .+.... +|+|+|++||++..+..||+|+. +-
T Consensus 736 e~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~-L~ 813 (1622)
T PLN03130 736 ERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIIL-VH 813 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEE-Ee
Confidence 3456799999999999999999999999999999999999888765 455443 58999999999998888999983 22
Q ss_pred cccccccCCchhh
Q psy6940 101 APKLHLSLNESEL 113 (123)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (123)
.|+....++.+++
T Consensus 814 ~G~i~e~Gt~~eL 826 (1622)
T PLN03130 814 EGMIKEEGTYEEL 826 (1622)
T ss_pred CCEEEEeCCHHHH
Confidence 4555444444444
No 374
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.8e-18 Score=126.38 Aligned_cols=85 Identities=28% Similarity=0.281 Sum_probs=78.6
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
...++++.+|+.++.|.++.+||.|||+||+|||-++..++++||||||++||..+...+-.++..-..+|..||.+||.
T Consensus 110 ~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq 189 (209)
T COG4133 110 TIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQ 189 (209)
T ss_pred hHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 45688999999999999999999999999999999999999999999999999999999999998877788899999998
Q ss_pred HHHHH
Q psy6940 86 IEEAR 90 (123)
Q Consensus 86 ~~~~~ 90 (123)
.--+.
T Consensus 190 ~l~~~ 194 (209)
T COG4133 190 PLPIA 194 (209)
T ss_pred ccCCC
Confidence 75543
No 375
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=7.1e-18 Score=127.93 Aligned_cols=91 Identities=21% Similarity=0.325 Sum_probs=74.2
Q ss_pred CHHHHHHHcC-cchhcCCCCCCCCHHHHHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-C-cE
Q psy6940 6 RPAEILTRTR-DFALRKLLPNWTVGGQVRRVSIAVTL----LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-G-QT 78 (123)
Q Consensus 6 ~~~e~l~~~~-l~~~~~~~~~~LSgGqrqrv~iaraL----~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g-~t 78 (123)
...+++..+. ...+.+..+.+||+||||++.+++++ +.+|+++++||||+|||+..+..+++.+.++.++ | .|
T Consensus 105 ~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~ 184 (213)
T cd03277 105 SPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQ 184 (213)
T ss_pred ChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCce
Confidence 4455555543 23456778999999999998877554 5799999999999999999999999999998766 5 57
Q ss_pred EEEEeCCHHHHHh-hccee
Q psy6940 79 IIITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 79 viivtH~~~~~~~-~d~v~ 96 (123)
+|++||++..... ||++.
T Consensus 185 viiith~~~~~~~~~~~~~ 203 (213)
T cd03277 185 YFLITPKLLPGLNYHEKMT 203 (213)
T ss_pred EEEEchhhccCCcccCceE
Confidence 9999999988776 88764
No 376
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.72 E-value=2.3e-17 Score=139.83 Aligned_cols=86 Identities=24% Similarity=0.262 Sum_probs=76.2
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
...+.+|+.. +...+++..||||||.|+.+|+.++.+|.+|||||||+.||..+.+.+-+.|..+. .|||+||||.
T Consensus 420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHDr 496 (530)
T COG0488 420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---GTVLLVSHDR 496 (530)
T ss_pred HHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---CeEEEEeCCH
Confidence 3456667654 34578999999999999999999999999999999999999999999999988764 4999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
.++.. |++++
T Consensus 497 ~Fl~~va~~i~ 507 (530)
T COG0488 497 YFLDRVATRIW 507 (530)
T ss_pred HHHHhhcceEE
Confidence 99998 98887
No 377
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=9.1e-17 Score=123.96 Aligned_cols=106 Identities=27% Similarity=0.269 Sum_probs=92.8
Q ss_pred HHHHHHcCcch-hcCCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 8 AEILTRTRDFA-LRKLLPN-WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~-~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.+.++.+++.+ +.+++++ -+|||||+|..|+.+++.+|++.|||||-||||..+-+.+.+-+.+++++|.++++|||.
T Consensus 124 ~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred HHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 45677777665 7888876 699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh--hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ--ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~--~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
.+.+.. .|++. .+++|+.+.+..++-..
T Consensus 204 ~rll~~i~pD~vh-vl~~GrIv~sG~~el~~ 233 (251)
T COG0396 204 QRLLDYIKPDKVH-VLYDGRIVKSGDPELAE 233 (251)
T ss_pred HHHHhhcCCCEEE-EEECCEEEecCCHHHHH
Confidence 999887 46554 58899999999884444
No 378
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.71 E-value=3.1e-17 Score=136.67 Aligned_cols=91 Identities=24% Similarity=0.274 Sum_probs=85.7
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..+++.+++++....++.+++|||||-||++||.+++++.+++++|||++-||...+-...+.++++.+.+++||+|.||
T Consensus 193 ~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHD 272 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272 (591)
T ss_pred cHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEech
Confidence 46889999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
+..+.. +|.|.
T Consensus 273 LavLD~lsD~vh 284 (591)
T COG1245 273 LAVLDYLSDFVH 284 (591)
T ss_pred HHHHHHhhheeE
Confidence 999888 77554
No 379
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.70 E-value=1.1e-16 Score=124.07 Aligned_cols=107 Identities=17% Similarity=0.199 Sum_probs=92.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++.+..++.++.+.|++++|.||+-|++++.|...+|++||+||..+.-|+..+++-.+.+.++.+++.|||++|||+
T Consensus 128 ~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 45667777788999999999999999999999999999999999999999999999999999999977889999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+.+.+ ||+++- +-.|+.....++++..
T Consensus 208 ~~I~~~Cd~~i~-l~~G~i~~~G~~~~vi 235 (249)
T COG1134 208 GAIKQYCDRAIW-LEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHHHhcCeeEE-EeCCEEEEcCCHHHHH
Confidence 99999 999982 2244444455555444
No 380
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=2.4e-17 Score=121.47 Aligned_cols=90 Identities=27% Similarity=0.361 Sum_probs=80.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNR-LSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~-l~~~g~tviivtH~ 85 (123)
+..++++.++..+.++.|.++|||||-||++.|+|+..|+.++||||++.||..-+.++.+++-. ..+.|...+++|||
T Consensus 115 a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 115 ANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred HHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 45688999999999999999999999999999999999999999999999999999999998754 45569999999999
Q ss_pred HHHHHhhccee
Q psy6940 86 IEEARQANTVF 96 (123)
Q Consensus 86 ~~~~~~~d~v~ 96 (123)
...+....||+
T Consensus 195 ~~DvpagsrVi 205 (213)
T COG4136 195 LQDVPAGSRVI 205 (213)
T ss_pred cccCCCCCeee
Confidence 99887655665
No 381
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.2e-16 Score=124.97 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 25 NWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
..||+||+||+++|++++. +|+++++||||++||+..+..+.+.+.++. ++.|+|++||++.....||+++.-..
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~-~~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS-RSHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEechHHHHHhcCcEEEEEE
Confidence 3499999999999997654 999999999999999999999999999876 47899999999986655999884333
No 382
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=8.3e-17 Score=140.59 Aligned_cols=96 Identities=28% Similarity=0.347 Sum_probs=90.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p---~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
..++..+|||||.|||-+|.-|..+. -++||||||+||-..-.+++++.|.++.+.|.|||+|+|+++.+..||+|+
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~II 895 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWII 895 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEE
Confidence 36899999999999999999998877 999999999999999999999999999999999999999999999999999
Q ss_pred -----eecccccccccCCchhhhh
Q psy6940 97 -----GGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 97 -----~~~~~~~~~~~~~~~~~~~ 115 (123)
+|--+|+..++.+|+++-.
T Consensus 896 DLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 896 DLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EcCCCCCCCCceEEEecCHHHHHh
Confidence 7788999999999998765
No 383
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=1.7e-16 Score=115.09 Aligned_cols=73 Identities=29% Similarity=0.331 Sum_probs=66.6
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 25 NWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
..+|+||+||+.++++++. +|+++++|||++|+|+..+..+.+.+.++..+|.++|++||+.+....+|+++.
T Consensus 76 ~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~ 152 (162)
T cd03227 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIH 152 (162)
T ss_pred eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEE
Confidence 3599999999999999987 789999999999999999999999998876558899999999999877998873
No 384
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=1.2e-16 Score=122.81 Aligned_cols=87 Identities=26% Similarity=0.350 Sum_probs=78.5
Q ss_pred HHHHc--CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 10 ILTRT--RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 10 ~l~~~--~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
-++.+ |++++.+.+++-|||||||-++++.|.++.|++++|||.|++|||.....+++.=.++.++ +.|.++|||++
T Consensus 130 ~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm 209 (263)
T COG1101 130 RLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM 209 (263)
T ss_pred HHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH
Confidence 34444 4678889999999999999999999999999999999999999999999999988888765 88999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+.+.. .+|.+
T Consensus 210 ~~Al~yG~RlI 220 (263)
T COG1101 210 EDALDYGNRLI 220 (263)
T ss_pred HHHHhhCCeEE
Confidence 99877 88887
No 385
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=2.2e-16 Score=141.90 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=74.7
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 18 ALRKLLPNWTVGGQVRRVSIAVTLLH----------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 18 ~~~~~~~~~LSgGqrqrv~iaraL~~----------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
...++++.+|||||++||+||+||+. +|+++|+||||+|||+.....+++.|.++...|++|+||||+++
T Consensus 942 ~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE 1021 (1042)
T ss_pred CCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 45567899999999999999999986 79999999999999999999999999999878999999999999
Q ss_pred HHHh-hcceeeec
Q psy6940 88 EARQ-ANTVFGGF 99 (123)
Q Consensus 88 ~~~~-~d~v~~~~ 99 (123)
+... ||+|....
T Consensus 1022 ~~~~~~~~i~v~~ 1034 (1042)
T TIGR00618 1022 FRERIPHRILVKK 1034 (1042)
T ss_pred HHHhhCCEEEEEE
Confidence 9988 88887543
No 386
>KOG0062|consensus
Probab=99.67 E-value=1e-16 Score=134.66 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=73.1
Q ss_pred HHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 10 ILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 10 ~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
++.-+|.. +...++.++||||-|-|+++||||..+||+|+|||||+.||..+...+-+.|..+ +.|+|+||||-.+
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~F 257 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNF 257 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccHHH
Confidence 34455644 4567889999999999999999999999999999999999999998888877664 4799999999999
Q ss_pred HHh-hccee
Q psy6940 89 ARQ-ANTVF 96 (123)
Q Consensus 89 ~~~-~d~v~ 96 (123)
+.. |..|+
T Consensus 258 Ln~V~tdII 266 (582)
T KOG0062|consen 258 LNTVCTDII 266 (582)
T ss_pred HHHHHHHHH
Confidence 988 88887
No 387
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=1.1e-16 Score=123.63 Aligned_cols=111 Identities=27% Similarity=0.412 Sum_probs=95.3
Q ss_pred CCCHH---HHHHHcCcch---hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-C
Q psy6940 4 LLRPA---EILTRTRDFA---LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-G 76 (123)
Q Consensus 4 ~~~~~---e~l~~~~l~~---~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g 76 (123)
|++.. +++.++|+.+ ....+|.+|.-||-|+|.||.|++++|+++|.||||+.++|..+.+++.++.++++. |
T Consensus 130 ~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~ 209 (330)
T COG4170 130 GWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN 209 (330)
T ss_pred chhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence 44444 4455667654 445799999999999999999999999999999999999999999999999999764 9
Q ss_pred cEEEEEeCCHHHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 77 QTIIITTHYIEEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 77 ~tviivtH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
.||++++||+..+.+ ||++-. +|+|+.+.+....++..
T Consensus 210 TtILL~s~Dl~~is~W~d~i~V-lYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 210 TTILLISHDLQMISQWADKINV-LYCGQTVESAPSEELVT 248 (330)
T ss_pred ceEEEEcccHHHHHHHhhheEE-EEecccccccchhHHhc
Confidence 999999999999999 999864 89999888887777663
No 388
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.66 E-value=2.1e-16 Score=132.68 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=67.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHh----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLL----------HSPSLVILDEPT-SGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~----------~~p~lliLDEPt-~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
.+.++.+|||||+||++||++++ .+|+++|||||| ++||+.....+.+.|.++ .|.|||++||+...
T Consensus 462 ~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~ 539 (562)
T PHA02562 462 EDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHD 539 (562)
T ss_pred CccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhc
Confidence 45578999999999999999987 599999999998 789999999999999987 58899999999776
Q ss_pred HHhhcceee
Q psy6940 89 ARQANTVFG 97 (123)
Q Consensus 89 ~~~~d~v~~ 97 (123)
...||+++.
T Consensus 540 ~~~~d~~~~ 548 (562)
T PHA02562 540 PQKFDRHLK 548 (562)
T ss_pred hhhhhcEEE
Confidence 666998873
No 389
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.66 E-value=2.1e-16 Score=131.78 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=84.0
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.|+.+.+++..+.++++.+|||||.|||+||.+|.++.++++||||++.||.+.+-.+.+.|+++..+ ++|.++|.||+
T Consensus 437 ~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi 516 (591)
T COG1245 437 TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516 (591)
T ss_pred HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce
Confidence 57788888999999999999999999999999999999999999999999999999999999998765 89999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
-.+.. +|+++
T Consensus 517 ~~~dyvsDr~i 527 (591)
T COG1245 517 YMIDYVSDRLI 527 (591)
T ss_pred ehhhhhhceEE
Confidence 99988 99998
No 390
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=8.8e-16 Score=116.36 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=93.8
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
-+.+.++|+. +.++.+|+.||.||||||++||||+.+|+++|.||..++||...+.++.+++.++.++ |.+-|+|+.+
T Consensus 130 ~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 130 FETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEech
Confidence 3556777854 6789999999999999999999999999999999999999999999999999999876 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
+..+.. +|.|+. +-.|+....+++.+++.
T Consensus 210 lG~iKHi~D~viV-M~EG~vvE~G~t~~v~a 239 (267)
T COG4167 210 IGMIKHISDQVLV-MHEGEVVERGSTADVLA 239 (267)
T ss_pred hhHhhhhcccEEE-EecCceeecCChhhhhc
Confidence 999999 999884 55666666677766664
No 391
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.64 E-value=6.5e-16 Score=131.40 Aligned_cols=72 Identities=26% Similarity=0.390 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHHhcC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 25 NWTVGGQVRRVSIAVTLLHS----PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~----p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
..+||||+||++||++++.. |+++|||||++|+|+..+..+.+.|+++. ++.+||+|||++..+..||+++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~~~~vi~iTH~~~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-ERHQVLCVTHLPQVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEEChHHHHHhcCeEEE
Confidence 57899999999999999985 69999999999999999999999999987 48999999999988866999883
No 392
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-16 Score=129.70 Aligned_cols=90 Identities=29% Similarity=0.374 Sum_probs=76.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
+.-.|||||||||+|||+++.+|++++|||.||+||....+.+...+++.. .|+|-+++.|.+..+..||.+++ +-.|
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiiv-l~~g 473 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIV-LDNG 473 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEE-eeCC
Confidence 344689999999999999999999999999999999999999999999876 68899999999999999999984 3455
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+...-++-.+++
T Consensus 474 ~i~erg~h~~ll 485 (497)
T COG5265 474 RIVERGTHEELL 485 (497)
T ss_pred EEEecCcHHHHH
Confidence 555555555554
No 393
>PRK03918 chromosome segregation protein; Provisional
Probab=99.63 E-value=1.3e-15 Score=133.70 Aligned_cols=77 Identities=26% Similarity=0.287 Sum_probs=67.4
Q ss_pred CCCCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 21 KLLPNWTVGGQVR------RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 21 ~~~~~~LSgGqrq------rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
+.++..|||||++ |+++|++++.+|+++|+||||++||+..+..+.++|..+...+.+||++||++++...||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4688999999999 5556668889999999999999999999999999999887668899999999986555999
Q ss_pred eee
Q psy6940 95 VFG 97 (123)
Q Consensus 95 v~~ 97 (123)
++.
T Consensus 863 ~~~ 865 (880)
T PRK03918 863 VIR 865 (880)
T ss_pred EEE
Confidence 873
No 394
>KOG0054|consensus
Probab=99.62 E-value=1.9e-15 Score=138.33 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=87.3
Q ss_pred HHHHHHHcCcch-----------hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q psy6940 7 PAEILTRTRDFA-----------LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ 75 (123)
Q Consensus 7 ~~e~l~~~~l~~-----------~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~ 75 (123)
.+++++.+.+.. .-..+.-+||||||||+++|||+-.+.|+++||.|++++|....+.+++..-.-.-+
T Consensus 613 Y~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~ 692 (1381)
T KOG0054|consen 613 YDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLR 692 (1381)
T ss_pred HHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc
Confidence 455666666542 123577799999999999999999999999999999999999999988876644446
Q ss_pred CcEEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 76 GQTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 76 g~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++|+|++||.+.++.+||.|+. +-+|+....++-++++
T Consensus 693 ~KT~ILVTHql~~L~~ad~Iiv-l~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 693 GKTVILVTHQLQFLPHADQIIV-LKDGKIVESGTYEELL 730 (1381)
T ss_pred CCEEEEEeCchhhhhhCCEEEE-ecCCeEecccCHHHHH
Confidence 8999999999999999999984 4567777777777766
No 395
>KOG0927|consensus
Probab=99.62 E-value=9.4e-16 Score=129.46 Aligned_cols=85 Identities=24% Similarity=0.286 Sum_probs=73.1
Q ss_pred HHHHcC-cchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 10 ILTRTR-DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 10 ~l~~~~-l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
++.-++ .....++...+||||+|.|+++||+|..+|++|+|||||++||+.+...+-+.|.++.. + ++++++|..++
T Consensus 204 il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~QDf 281 (614)
T KOG0927|consen 204 ILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQDF 281 (614)
T ss_pred HHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecchhh
Confidence 333343 34567889999999999999999999999999999999999999999888888876432 2 89999999999
Q ss_pred HHh-hccee
Q psy6940 89 ARQ-ANTVF 96 (123)
Q Consensus 89 ~~~-~d~v~ 96 (123)
+.. |.+|+
T Consensus 282 ln~vCT~Ii 290 (614)
T KOG0927|consen 282 LNGVCTNII 290 (614)
T ss_pred hhhHhhhhh
Confidence 998 99988
No 396
>KOG0927|consensus
Probab=99.62 E-value=7.7e-16 Score=130.01 Aligned_cols=85 Identities=26% Similarity=0.325 Sum_probs=76.1
Q ss_pred HHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 9 EILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 9 e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++.++|+. +-.+.+..+||.|||.||.+|+.++.+|.+|+|||||+|||......+.+.|.++. .+||++|||+.
T Consensus 491 ~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~vSHDfr 567 (614)
T KOG0927|consen 491 SILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLVSHDFR 567 (614)
T ss_pred HHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Cceeeeechhh
Confidence 467888887 45678889999999999999999999999999999999999999999999887754 47999999999
Q ss_pred HHHh-hccee
Q psy6940 88 EARQ-ANTVF 96 (123)
Q Consensus 88 ~~~~-~d~v~ 96 (123)
.+.+ ++++.
T Consensus 568 lI~qVaeEi~ 577 (614)
T KOG0927|consen 568 LISQVAEEIW 577 (614)
T ss_pred HHHHHHHHhH
Confidence 9988 88776
No 397
>KOG0062|consensus
Probab=99.61 E-value=2.3e-15 Score=126.52 Aligned_cols=90 Identities=24% Similarity=0.258 Sum_probs=76.8
Q ss_pred CCCHHHH---HHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEE
Q psy6940 4 LLRPAEI---LTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI 79 (123)
Q Consensus 4 ~~~~~e~---l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv 79 (123)
|...+|+ +..+|+. +++..++..||||||-||+||.+...+|-+|+|||||+.||..+...+.+.|+.+. ..|
T Consensus 456 G~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---GGV 532 (582)
T KOG0062|consen 456 GKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---GGV 532 (582)
T ss_pred CCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---CcE
Confidence 3444554 4556654 56677789999999999999999999999999999999999999999998888764 369
Q ss_pred EEEeCCHHHHHh-hccee
Q psy6940 80 IITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 80 iivtH~~~~~~~-~d~v~ 96 (123)
|+||||.+++.. |+.++
T Consensus 533 v~VSHd~~fi~~~c~E~W 550 (582)
T KOG0062|consen 533 VLVSHDEEFISSLCKELW 550 (582)
T ss_pred EEEECcHHHHhhcCceeE
Confidence 999999999998 99887
No 398
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.60 E-value=4.5e-15 Score=133.84 Aligned_cols=78 Identities=22% Similarity=0.160 Sum_probs=69.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhc--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLH--------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~--------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.++++.+|||||+++++||+||+. +|+++|+||||++||+.....+++.|..+...|+||+||||..+...+
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 357899999999999999999996 899999999999999999999999999998889999999997766555
Q ss_pred -hcceee
Q psy6940 92 -ANTVFG 97 (123)
Q Consensus 92 -~d~v~~ 97 (123)
..++.+
T Consensus 1023 i~~qi~V 1029 (1047)
T PRK10246 1023 IPVQIKV 1029 (1047)
T ss_pred ccceEEE
Confidence 444443
No 399
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.60 E-value=1.9e-15 Score=133.99 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=71.7
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
..+.++..|||||+++++||++++ .+|+++||||||++||+..+..+.++|..++. +.+||+|||++..+..||+
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~ 1160 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQ 1160 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhh
Confidence 456789999999999999999985 57799999999999999999999999998864 5789999999998766999
Q ss_pred eeeeccc
Q psy6940 95 VFGGFFA 101 (123)
Q Consensus 95 v~~~~~~ 101 (123)
+++.-..
T Consensus 1161 ~~~~~~~ 1167 (1179)
T TIGR02168 1161 LYGVTMQ 1167 (1179)
T ss_pred Heeeeec
Confidence 9865443
No 400
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.60 E-value=3.2e-15 Score=124.94 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=92.4
Q ss_pred HHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++++.. .-...++..||||.+||+-+||-+..+|++||+.+||.|||..+.+.+.+.|.+.++.|++|+++|-|+
T Consensus 384 ~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL 463 (501)
T COG3845 384 RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL 463 (501)
T ss_pred HHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH
Confidence 4566677654 334667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhhhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~~~ 115 (123)
+++.. ||++.. ++.|+......+.+...
T Consensus 464 DEil~lsDrIaV-i~~Gri~~~~~~~~~t~ 492 (501)
T COG3845 464 DEILELSDRIAV-IYEGRIVGIVPPEEATR 492 (501)
T ss_pred HHHHHhhheeee-eeCCceecccccccCCH
Confidence 99998 999875 77777777776665433
No 401
>PRK10869 recombination and repair protein; Provisional
Probab=99.60 E-value=4.6e-15 Score=126.29 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 25 NWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
..+||||+||++||++++. +|+++|||||++|+|+.....+.+.++++. ++.+||+|||++..+..||+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~~~qvi~iTH~~~~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-ESTQVMCVTHLPQVAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEE
Confidence 3589999999999999997 589999999999999999999999999986 46899999999998766998873
No 402
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.59 E-value=1.3e-15 Score=113.68 Aligned_cols=86 Identities=28% Similarity=0.189 Sum_probs=70.1
Q ss_pred HHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhhCCcEEEEEeCCHHH
Q psy6940 10 ILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW-RYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 10 ~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~-~~l~~l~~~g~tviivtH~~~~ 88 (123)
++..++..+..+....++|+||+|++.+++++ .+|+++++|||++|+|+..+..+. ..++++.+.|.++|++||+.+.
T Consensus 75 ~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l 153 (200)
T cd03280 75 IFADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGEL 153 (200)
T ss_pred EEEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHH
Confidence 33444545556778899999999999999874 899999999999999999999886 4677777678999999998654
Q ss_pred HHhhccee
Q psy6940 89 ARQANTVF 96 (123)
Q Consensus 89 ~~~~d~v~ 96 (123)
...||+++
T Consensus 154 ~~~~d~~~ 161 (200)
T cd03280 154 KAYAYKRE 161 (200)
T ss_pred HHHHhcCC
Confidence 44488876
No 403
>KOG0054|consensus
Probab=99.58 E-value=7.8e-15 Score=134.32 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=82.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
-..++|-||||.+|+||||++++++++|||.|+++|+.+-..|.+.|++-- .++|||.|.|.+..+..||+|+. +=.|
T Consensus 1272 gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlV-ld~G 1349 (1381)
T KOG0054|consen 1272 GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLV-LDAG 1349 (1381)
T ss_pred CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEE-eeCC
Confidence 346889999999999999999999999999999999999999999998844 47899999999999999999985 5688
Q ss_pred cccccCCchhhhh
Q psy6940 103 KLHLSLNESELLV 115 (123)
Q Consensus 103 ~~~~~~~~~~~~~ 115 (123)
+.....+|.+++.
T Consensus 1350 ~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1350 RVVEFDSPAELLS 1362 (1381)
T ss_pred eEeecCChHHHHh
Confidence 8888888888884
No 404
>KOG0056|consensus
Probab=99.58 E-value=2.2e-15 Score=126.98 Aligned_cols=91 Identities=30% Similarity=0.365 Sum_probs=78.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
.+.-.|||||||||+|||+++.+|.+++|||.|++||....+.+...+.+++ .++|-|++.|.+..+.+||.+.+ +-+
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlc-a~RTtIVvAHRLSTivnAD~ILv-i~~ 747 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLC-ANRTTIVVAHRLSTIVNADLILV-ISN 747 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHh-cCCceEEEeeeehheecccEEEE-EeC
Confidence 3555799999999999999999999999999999999999999999999987 47889999999999999999884 445
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|..+..+.-++++
T Consensus 748 G~IvErG~HeeLl 760 (790)
T KOG0056|consen 748 GRIVERGRHEELL 760 (790)
T ss_pred CeEeecCcHHHHH
Confidence 5555556656655
No 405
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.57 E-value=1.2e-15 Score=114.86 Aligned_cols=107 Identities=24% Similarity=0.341 Sum_probs=89.4
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhc-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEE
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLH-----SP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII 80 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~-----~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi 80 (123)
+++...+++.+...+..++|||||.|||-+|...+. || +++++|||.++||...+..+...+.+++..|.+||
T Consensus 107 ~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vi 186 (248)
T COG4138 107 NDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIV 186 (248)
T ss_pred HHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEE
Confidence 456667788888888999999999999999987754 33 79999999999999999999999999999999999
Q ss_pred EEeCCHHHHHh-hccee----eec-ccccccccCCchhhh
Q psy6940 81 ITTHYIEEARQ-ANTVF----GGF-FAPKLHLSLNESELL 114 (123)
Q Consensus 81 ivtH~~~~~~~-~d~v~----~~~-~~~~~~~~~~~~~~~ 114 (123)
+++||++...+ +|++. +-+ .+|+...-+.++.+-
T Consensus 187 ms~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~ 226 (248)
T COG4138 187 MSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLA 226 (248)
T ss_pred EeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHH
Confidence 99999998776 99998 222 366666666666554
No 406
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=8.8e-15 Score=134.21 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-----hCCcEEEEEeCCHHHHH
Q psy6940 22 LLPNWTVGGQVR------RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-----VQGQTIIITTHYIEEAR 90 (123)
Q Consensus 22 ~~~~~LSgGqrq------rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-----~~g~tviivtH~~~~~~ 90 (123)
..++.||+|||| |++||++++.+|++++|||||+|||+.....+.+.|..+. ..|.+||+|||++.++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 355789999999 9999999999999999999999999999999998888763 23789999999999987
Q ss_pred h-hc
Q psy6940 91 Q-AN 93 (123)
Q Consensus 91 ~-~d 93 (123)
. |.
T Consensus 1275 ~~~~ 1278 (1311)
T TIGR00606 1275 LLGR 1278 (1311)
T ss_pred HHhh
Confidence 6 53
No 407
>PRK01156 chromosome segregation protein; Provisional
Probab=99.55 E-value=2.1e-14 Score=127.07 Aligned_cols=76 Identities=24% Similarity=0.204 Sum_probs=66.0
Q ss_pred CCCCCCCHHHHHHHHH------HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hC-C-cEEEEEeCCHHHHHhh
Q psy6940 22 LLPNWTVGGQVRRVSI------AVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQ-G-QTIIITTHYIEEARQA 92 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~i------araL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~-g-~tviivtH~~~~~~~~ 92 (123)
.++..|||||+++++| |++++.+|++++|||||++||+..+..+.+++.... .. | .+||++||+..++..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 589999999999999999999999999999987643 33 3 4899999999987669
Q ss_pred cceee
Q psy6940 93 NTVFG 97 (123)
Q Consensus 93 d~v~~ 97 (123)
|+++.
T Consensus 877 d~ii~ 881 (895)
T PRK01156 877 DVAYE 881 (895)
T ss_pred CeEEE
Confidence 99984
No 408
>KOG0065|consensus
Probab=99.54 E-value=2.8e-15 Score=135.95 Aligned_cols=90 Identities=32% Similarity=0.438 Sum_probs=83.3
Q ss_pred HHHHHHHcCcchhcCCCCCC----CCHHHHHHHHHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEE
Q psy6940 7 PAEILTRTRDFALRKLLPNW----TVGGQVRRVSIAVTLLHSP-SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~----LSgGqrqrv~iaraL~~~p-~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvii 81 (123)
.+++++.+++.++++..++. ||.+||||+.||.-|+.+| .+|+|||||+|||..+.-.+++.++++++.|.||+.
T Consensus 906 Ve~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 906 VEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 46889999999999888888 9999999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCHHHH--Hhhccee
Q psy6940 82 TTHYIEEA--RQANTVF 96 (123)
Q Consensus 82 vtH~~~~~--~~~d~v~ 96 (123)
+-|.+... ++.|+++
T Consensus 986 TIHQPS~~ife~FD~LL 1002 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELL 1002 (1391)
T ss_pred EecCCcHHHHHHHhHHH
Confidence 99999753 4499988
No 409
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.51 E-value=3.6e-14 Score=126.47 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=71.2
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
....++..||||||++++||++++. +|+++|||||+++||+..+..+.++|.++.. +..+|++||+...+..||+
T Consensus 1067 ~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~ 1145 (1164)
T TIGR02169 1067 KPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADR 1145 (1164)
T ss_pred CCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcce
Confidence 3456788999999999999999985 7899999999999999999999999998764 5789999999987766999
Q ss_pred eeeeccc
Q psy6940 95 VFGGFFA 101 (123)
Q Consensus 95 v~~~~~~ 101 (123)
+++....
T Consensus 1146 ~~~~~~~ 1152 (1164)
T TIGR02169 1146 AIGVTMR 1152 (1164)
T ss_pred eEeEEEe
Confidence 9965544
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.49 E-value=3.8e-14 Score=98.63 Aligned_cols=49 Identities=33% Similarity=0.452 Sum_probs=43.7
Q ss_pred HHHHHHHcCcchhcCCCC----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy6940 7 PAEILTRTRDFALRKLLP----NWTVGGQVRRVSIAVTLLHSPSLVILDEPTS 55 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~----~~LSgGqrqrv~iaraL~~~p~lliLDEPt~ 55 (123)
..++++.+++..+.+..+ ..||+|||||++||+|++.+|+++||||||+
T Consensus 85 ~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 85 IEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 567888888777666666 9999999999999999999999999999996
No 411
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.4e-13 Score=120.66 Aligned_cols=96 Identities=25% Similarity=0.333 Sum_probs=88.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee-
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHS--PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF- 96 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~--p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~- 96 (123)
.++...+|||||.||+-+|..+-.+ -=+++||||+.||-+....++.+.|+++++.|.|+|+|+||.+.+..||+++
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iID 554 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIID 554 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEe
Confidence 4788999999999999999999765 4689999999999999999999999999989999999999999999999999
Q ss_pred ----eecccccccccCCchhhhh
Q psy6940 97 ----GGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 97 ----~~~~~~~~~~~~~~~~~~~ 115 (123)
.|..+|+..+.++++++..
T Consensus 555 iGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 555 IGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eCCCCCcCCCEEEEccCHHHHHh
Confidence 6778999999999988874
No 412
>PRK02224 chromosome segregation protein; Provisional
Probab=99.45 E-value=2.5e-13 Score=119.79 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHH------HHHHHHHHhcC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc-EEEEEeCCHHH
Q psy6940 22 LLPNWTVGGQVR------RVSIAVTLLHS-----P-SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIITTHYIEE 88 (123)
Q Consensus 22 ~~~~~LSgGqrq------rv~iaraL~~~-----p-~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~-tviivtH~~~~ 88 (123)
.+|..||||||+ |++++++++.+ | +++|+||||+++|+..+..+.++|..+...|. +||++||+..+
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~ 856 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL 856 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH
Confidence 357899999999 89999998864 3 67999999999999999999999999876564 79999999999
Q ss_pred HHhhcceeee
Q psy6940 89 ARQANTVFGG 98 (123)
Q Consensus 89 ~~~~d~v~~~ 98 (123)
+..||+++..
T Consensus 857 ~~~ad~~~~~ 866 (880)
T PRK02224 857 VGAADDLVRV 866 (880)
T ss_pred HHhcCeeEEe
Confidence 8779998853
No 413
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.42 E-value=5.6e-13 Score=114.30 Aligned_cols=87 Identities=25% Similarity=0.284 Sum_probs=70.3
Q ss_pred HHHHHcCcchhcC------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEE
Q psy6940 9 EILTRTRDFALRK------LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82 (123)
Q Consensus 9 e~l~~~~l~~~~~------~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviiv 82 (123)
+++..+++.++.+ +=-..||+|||||+++||.+.++|++++|||-|++||+.....+++.+++-. .+.|||-|
T Consensus 492 ~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV 570 (604)
T COG4178 492 AVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISV 570 (604)
T ss_pred HHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEe
Confidence 5667777765432 2235699999999999999999999999999999999999999999998733 47999999
Q ss_pred eCCHHHHHhhccee
Q psy6940 83 THYIEEARQANTVF 96 (123)
Q Consensus 83 tH~~~~~~~~d~v~ 96 (123)
+|........++.+
T Consensus 571 ~Hr~tl~~~h~~~l 584 (604)
T COG4178 571 GHRPTLWNFHSRQL 584 (604)
T ss_pred ccchhhHHHHhhhe
Confidence 99887655444443
No 414
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.40 E-value=3.8e-13 Score=99.49 Aligned_cols=85 Identities=22% Similarity=0.129 Sum_probs=61.7
Q ss_pred HHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhhC-CcEEEEEeCCH
Q psy6940 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF-WRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 9 e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tviivtH~~ 86 (123)
+++..++..+..+...+++|+|++|...+.. .+.+|+++|+|||++|+|+.....+ ..+++.+.++ +.++|++||+.
T Consensus 44 ~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 44 RIFTRIGASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred eEEEEeCCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 3444555556667778888988876433332 2459999999999999999977776 4566667664 88999999999
Q ss_pred HHHHhhcc
Q psy6940 87 EEARQANT 94 (123)
Q Consensus 87 ~~~~~~d~ 94 (123)
+....|++
T Consensus 123 ~l~~~~~~ 130 (185)
T smart00534 123 ELTKLADE 130 (185)
T ss_pred HHHHHhhc
Confidence 65444653
No 415
>KOG0066|consensus
Probab=99.39 E-value=6.8e-13 Score=111.26 Aligned_cols=78 Identities=26% Similarity=0.269 Sum_probs=66.4
Q ss_pred HHHcCcchhc-CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 11 LTRTRDFALR-KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 11 l~~~~l~~~~-~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+-.+|+...+ .-.+..|||||+-||++|-.-+..|++|||||||++||..+...+.+.|.++. ..||+||||-..+
T Consensus 688 LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 688 LGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERLI 764 (807)
T ss_pred hhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEeccccee
Confidence 3444555444 34688999999999999999999999999999999999999999999998864 3799999999988
Q ss_pred Hh
Q psy6940 90 RQ 91 (123)
Q Consensus 90 ~~ 91 (123)
.+
T Consensus 765 ~e 766 (807)
T KOG0066|consen 765 VE 766 (807)
T ss_pred ee
Confidence 76
No 416
>KOG0066|consensus
Probab=99.38 E-value=2.4e-13 Score=113.98 Aligned_cols=87 Identities=26% Similarity=0.306 Sum_probs=75.1
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+..++.-+|.. ..-+++...+|||-|-||++||||...|-+|+|||||+.||..+...+-+++..++ +|+++||||
T Consensus 392 ARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHD 468 (807)
T KOG0066|consen 392 ARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHD 468 (807)
T ss_pred HHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecc
Confidence 44556666654 35578889999999999999999999999999999999999999888888887765 699999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
..++.. |..|+
T Consensus 469 QgFLD~VCtdII 480 (807)
T KOG0066|consen 469 QGFLDSVCTDII 480 (807)
T ss_pred cchHHHHHHHHh
Confidence 999988 88887
No 417
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=8.1e-13 Score=100.86 Aligned_cols=83 Identities=22% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHhh-CCcEEEE
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTL--LHSPSLVILDEP---TSGLDPVLANIFWRYLNRLSV-QGQTIII 81 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL--~~~p~lliLDEP---t~gLD~~~~~~i~~~l~~l~~-~g~tvii 81 (123)
++++.++++. +.....+|.|+++++.+++++ +.+|+++|+||| |+++|+..... ..++.+.+ .|.++|+
T Consensus 74 ~~il~~~~l~---d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vli 148 (222)
T cd03285 74 DCILARVGAS---DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLF 148 (222)
T ss_pred ceeEeeeccc---cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEE
Confidence 3445555543 334678999999999999999 899999999999 88999988753 33344443 4889999
Q ss_pred EeCCHHHHHh-hccee
Q psy6940 82 TTHYIEEARQ-ANTVF 96 (123)
Q Consensus 82 vtH~~~~~~~-~d~v~ 96 (123)
+||+ .++.. ||++.
T Consensus 149 sTH~-~el~~~~~~~~ 163 (222)
T cd03285 149 ATHF-HELTALADEVP 163 (222)
T ss_pred Eech-HHHHHHhhcCC
Confidence 9996 55555 88765
No 418
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=1.4e-12 Score=101.67 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-h
Q psy6940 23 LPNWTVGGQVRRVSIAVTLL---------HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-A 92 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~---------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~ 92 (123)
....+|+||||++++|++++ .+|+++++||||++||+..+..+.+.+.++. .+++++|+...+.. |
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchh
Confidence 35568999999999999985 7999999999999999999999999887643 46677777666655 5
No 419
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.36 E-value=5.7e-13 Score=99.46 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=59.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR-YLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
....+.++.+++| +..+.+++.+|+++|+||||+|+|+.....+.. +++.+.+.+.++|++||+.+.+..++++.
T Consensus 86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~ 161 (202)
T cd03243 86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVP 161 (202)
T ss_pred cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCC
Confidence 4445566777755 666678889999999999999999998887754 56666666899999999998877777543
No 420
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.26 E-value=2.6e-11 Score=108.13 Aligned_cols=78 Identities=27% Similarity=0.247 Sum_probs=69.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh------cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhh
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLL------HS--PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQA 92 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~------~~--p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~ 92 (123)
.+++.+|||||+-.++||.+|+ .+ -+++|+||||..||+.....+.+++..+...|.+|++|||+.++...+
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~ 889 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERA 889 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhC
Confidence 3688999999999888877765 45 799999999999999999999999999988899999999999888888
Q ss_pred cceeee
Q psy6940 93 NTVFGG 98 (123)
Q Consensus 93 d~v~~~ 98 (123)
|.++..
T Consensus 890 ~~~i~V 895 (908)
T COG0419 890 DVRIRV 895 (908)
T ss_pred CeEEEE
Confidence 988843
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.25 E-value=1.4e-11 Score=93.10 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=64.4
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF-WRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i-~~~l~~l~~~g~tviivtH~~ 86 (123)
++++.+++..+...+..+.+|+|++|+ ..+.+++.+|+++++|||++|+|+.....+ ...+..+.+.|.++|++||+.
T Consensus 73 d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 73 NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 344444554444566778899999865 556678899999999999999999776654 556777777799999999999
Q ss_pred HHHHh
Q psy6940 87 EEARQ 91 (123)
Q Consensus 87 ~~~~~ 91 (123)
+.+..
T Consensus 152 ~l~~~ 156 (204)
T cd03282 152 DIAAI 156 (204)
T ss_pred HHHHH
Confidence 98876
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.24 E-value=8.3e-11 Score=88.18 Aligned_cols=80 Identities=29% Similarity=0.372 Sum_probs=61.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeee
Q psy6940 23 LPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGG 98 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~ 98 (123)
.+..+|||||..++||.-|+ ..+++++||||.++||+..+..+.++|.++.+ +.=+|++||+...+..+|+.++.
T Consensus 133 ~~~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 133 SPEFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp TTTGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 34489999999999997664 56799999999999999999999999998764 46799999999888889998865
Q ss_pred ccccc
Q psy6940 99 FFAPK 103 (123)
Q Consensus 99 ~~~~~ 103 (123)
...++
T Consensus 212 ~~~~~ 216 (220)
T PF02463_consen 212 TMVEN 216 (220)
T ss_dssp EECCT
T ss_pred ccccc
Confidence 54333
No 423
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=2.3e-11 Score=99.05 Aligned_cols=63 Identities=22% Similarity=0.436 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHHhc---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 25 NWTVGGQVRRVSIAVTLLH---------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~---------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
..+|.||+|++.+|.+|+. +|++++||||+++||+..++.+++.+.+. |..|+++||+.+.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 4789999999999999999 99999999999999999999999988753 679999999987654
No 424
>PRK00064 recF recombination protein F; Reviewed
Probab=99.20 E-value=3.7e-11 Score=97.54 Aligned_cols=67 Identities=24% Similarity=0.344 Sum_probs=57.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLL---------HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~---------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.....+|.||+|++.+|+.++ .+|+++++|||+++||+..+..+.+.+.++ +..++++||+.+.+..
T Consensus 269 ~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~ 344 (361)
T PRK00064 269 PAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLAD 344 (361)
T ss_pred CHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhh
Confidence 345789999999999999986 799999999999999999999999888653 3579999999877654
No 425
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.17 E-value=6.6e-11 Score=98.03 Aligned_cols=90 Identities=24% Similarity=0.277 Sum_probs=75.3
Q ss_pred HHHHHHHcCcch---hcCC--CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHhhCCcEEE
Q psy6940 7 PAEILTRTRDFA---LRKL--LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLN-RLSVQGQTII 80 (123)
Q Consensus 7 ~~e~l~~~~l~~---~~~~--~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~-~l~~~g~tvi 80 (123)
++..++++.+.+ +.|. .+-.||.|||||+++.-|++-+-+++++||-.+..||..++.+++.+- .++++|+||+
T Consensus 424 i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~ 503 (546)
T COG4615 424 IEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIF 503 (546)
T ss_pred HHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEE
Confidence 345666665543 3333 456789999999999999999999999999999999999999987665 4567799999
Q ss_pred EEeCCHHHHHhhccee
Q psy6940 81 ITTHYIEEARQANTVF 96 (123)
Q Consensus 81 ivtH~~~~~~~~d~v~ 96 (123)
.||||-.....+||++
T Consensus 504 aIsHDd~YF~~ADrll 519 (546)
T COG4615 504 AISHDDHYFIHADRLL 519 (546)
T ss_pred EEecCchhhhhHHHHH
Confidence 9999998888899988
No 426
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.16 E-value=9.4e-11 Score=85.09 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=66.9
Q ss_pred cCcchhcCCCCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 14 TRDFALRKLLPNWTVGGQVR------RVSIAVTLLHSPSLVILDEPTSGLD---PVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 14 ~~l~~~~~~~~~~LSgGqrq------rv~iaraL~~~p~lliLDEPt~gLD---~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.+.....+.++..+|+|++| ......+...+|+++++|||++.+| +..+..+.+.+..+++.|.|+|+++|
T Consensus 59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~ 138 (187)
T cd01124 59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSE 138 (187)
T ss_pred cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 34445567888999999988 4555555678999999999999999 77788888888888878999999999
Q ss_pred CHHH---------HHh-hccee
Q psy6940 85 YIEE---------ARQ-ANTVF 96 (123)
Q Consensus 85 ~~~~---------~~~-~d~v~ 96 (123)
+... +.. ||.++
T Consensus 139 ~~~~~~~~~~~~~~~~~aD~ii 160 (187)
T cd01124 139 QSGLEGTGFGGGDVEYLVDGVI 160 (187)
T ss_pred cccCCCcccCcCceeEeeeEEE
Confidence 8764 455 88776
No 427
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.15 E-value=1.9e-10 Score=83.15 Aligned_cols=69 Identities=28% Similarity=0.349 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p---~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
..+...+|.|++|.+.++..+...+ .++++|||-++|.|..++.+.+.+.+....+.-||++||.+..+
T Consensus 231 ~~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 231 EIPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp EGGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred EEeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 3466778999999999998887766 89999999999999999999999988765578899999998654
No 428
>KOG0063|consensus
Probab=99.15 E-value=7.6e-11 Score=98.38 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=82.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+.+....++-+.+||||+-||.+||.+.+++.+++++|||.+.||...+-+-...|+.+.....=||+|.||+
T Consensus 194 ~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL 273 (592)
T KOG0063|consen 194 KEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL 273 (592)
T ss_pred HHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeec
Confidence 45677778888889999999999999999999999999999999999999999999999999999987788999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
..+.. .|-+.
T Consensus 274 sVLDylSDFiC 284 (592)
T KOG0063|consen 274 SVLDYLSDFIC 284 (592)
T ss_pred hHHHhhhccee
Confidence 99887 66655
No 429
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.14 E-value=1.1e-10 Score=107.97 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=57.0
Q ss_pred hcCCCCCCCCHHHHHHHH----HHHH--------HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 19 LRKLLPNWTVGGQVRRVS----IAVT--------LLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~----iara--------L~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+.+..++.|||||||++. +|++ +..+|++++|||||+|+|+..+..+++++.++ |.++|++||.+
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 445568999999999996 5655 55899999999999999999999999999886 68899999977
Q ss_pred H
Q psy6940 87 E 87 (123)
Q Consensus 87 ~ 87 (123)
-
T Consensus 1317 W 1317 (1353)
T TIGR02680 1317 W 1317 (1353)
T ss_pred h
Confidence 4
No 430
>KOG2355|consensus
Probab=99.12 E-value=1e-10 Score=90.22 Aligned_cols=84 Identities=27% Similarity=0.303 Sum_probs=71.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHHh-hcceeeec
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQ-ANTVFGGF 99 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~~-~d~v~~~~ 99 (123)
.+.+..|-|||+||.|++.|++.=++++|||.|-.||..++..+.+.+++-.++ |.||++.||-.+-++. ..+++. +
T Consensus 143 WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~y-i 221 (291)
T KOG2355|consen 143 WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVY-I 221 (291)
T ss_pred EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEE-e
Confidence 356778999999999999999999999999999999999999999999987765 9999999999988877 777762 3
Q ss_pred ccccccc
Q psy6940 100 FAPKLHL 106 (123)
Q Consensus 100 ~~~~~~~ 106 (123)
..|++..
T Consensus 222 ~~Gkl~~ 228 (291)
T KOG2355|consen 222 KSGKLVD 228 (291)
T ss_pred cCCeeee
Confidence 3444443
No 431
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=95.44 Aligned_cols=90 Identities=28% Similarity=0.320 Sum_probs=81.6
Q ss_pred HHHHHHHcCcch--hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 7 PAEILTRTRDFA--LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 7 ~~e~l~~~~l~~--~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
+.+++++.|+.+ +..+++++||-|||.|+.||++++.+|.+++.||-.+.||+.+..++..-|.+++++ |.|++++|
T Consensus 486 AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvT 565 (593)
T COG2401 486 AVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565 (593)
T ss_pred HHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 567888888754 567789999999999999999999999999999999999999999999999999876 99999999
Q ss_pred CCHHHHHh--hccee
Q psy6940 84 HYIEEARQ--ANTVF 96 (123)
Q Consensus 84 H~~~~~~~--~d~v~ 96 (123)
|+.+.... -|.++
T Consensus 566 hrpEv~~AL~PD~li 580 (593)
T COG2401 566 HRPEVGNALRPDTLI 580 (593)
T ss_pred cCHHHHhccCCceeE
Confidence 99999875 67776
No 432
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.10 E-value=9.1e-11 Score=103.62 Aligned_cols=75 Identities=29% Similarity=0.239 Sum_probs=63.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhhCCcEEEEEeCCHHHHHh-hcce
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR-YLNRLSVQGQTIIITTHYIEEARQ-ANTV 95 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tviivtH~~~~~~~-~d~v 95 (123)
....++++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+.|.++|++||+.+.... +++.
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~ 460 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNRE 460 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCC
Confidence 3456788999999999999988 8999999999999999999888854 566777678999999999888766 5433
No 433
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.07 E-value=8.7e-10 Score=82.85 Aligned_cols=62 Identities=27% Similarity=0.262 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 30 GQVRRVSIAVTLLH--SPSLVILDEPTSGLDPVLANIFW-RYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 30 Gqrqrv~iaraL~~--~p~lliLDEPt~gLD~~~~~~i~-~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.+.+|+.-+...+. +|+++|+|||++|+|+.....+. .++.++.+.|.|+|++||+++.+..
T Consensus 89 ~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 89 AELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 34456555555556 99999999999999999988764 4678877678999999999998765
No 434
>KOG0060|consensus
Probab=99.03 E-value=8.1e-10 Score=94.50 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
..||+|||||+++||.+.++|++-||||-|+++|......+.+.+++ .|.|.|-|+|.......=|.++
T Consensus 569 dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L 637 (659)
T KOG0060|consen 569 DVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFHDYVL 637 (659)
T ss_pred hhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhhhEEE
Confidence 46999999999999999999999999999999999999888887765 5899999999988776555554
No 435
>KOG0063|consensus
Probab=99.03 E-value=2.3e-10 Score=95.56 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=78.0
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeCCH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH~~ 86 (123)
.++++-+.++...++.+.+||||++|||++|.+|-...++++.|||.+-||.+.+......++++- ..++|-.+|+||.
T Consensus 438 ~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdf 517 (592)
T KOG0063|consen 438 NDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDF 517 (592)
T ss_pred HhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHH
Confidence 355666667778899999999999999999999999999999999999999999888777777764 3478999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
-.+.. +|+++
T Consensus 518 ImaTYladrvi 528 (592)
T KOG0063|consen 518 IMATYLADRVI 528 (592)
T ss_pred HHHHhhcceeE
Confidence 88888 99998
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.00 E-value=1.8e-09 Score=81.95 Aligned_cols=63 Identities=25% Similarity=0.248 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhhC---CcEEEEEeCCHHHHHh
Q psy6940 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF-WRYLNRLSVQ---GQTIIITTHYIEEARQ 91 (123)
Q Consensus 29 gGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i-~~~l~~l~~~---g~tviivtH~~~~~~~ 91 (123)
.-+.||++++++++.+|+++++|||++|+|+.....+ ...++++.+. +.++|++||+.+.+..
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 5677999999999999999999999999999765444 5678887654 3589999999998865
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.96 E-value=1.1e-09 Score=96.64 Aligned_cols=71 Identities=27% Similarity=0.231 Sum_probs=60.9
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF-WRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i-~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
-.....+++|+|+++++.|++++ .+|+++|+|||++|+||.....+ ..++..+.+.|.++|++||+.+...
T Consensus 378 si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 378 SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 33456788999999999998876 78999999999999999999988 5677777777999999999987643
No 438
>KOG0065|consensus
Probab=98.86 E-value=2.7e-09 Score=97.72 Aligned_cols=105 Identities=21% Similarity=0.143 Sum_probs=81.9
Q ss_pred HHHHHHHcCcchhc-----CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEE
Q psy6940 7 PAEILTRTRDFALR-----KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTII 80 (123)
Q Consensus 7 ~~e~l~~~~l~~~~-----~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tvi 80 (123)
.+.+++.+|+..-+ |...+-.|||||+||.+|-+++.+|+++.+||+|.|||..+.-++.+.++++... +.|++
T Consensus 236 ~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~ 315 (1391)
T KOG0065|consen 236 TDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATAL 315 (1391)
T ss_pred HHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEE
Confidence 35678888987644 4455668999999999999999999999999999999999999999999998764 88998
Q ss_pred EEeCCHHH-HHh-hcceeeecccccccccCCchh
Q psy6940 81 ITTHYIEE-ARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 81 ivtH~~~~-~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
++-+.... +-. .|.|+. ++.|+..-.+..++
T Consensus 316 vsi~Q~s~~~~~lFD~v~l-L~eG~~iy~Gp~d~ 348 (1391)
T KOG0065|consen 316 VSILQPSPEIYDLFDDVIL-LSEGYQIYQGPRDE 348 (1391)
T ss_pred EEeccCChHHHHhhhheee-eeccceEEeccHHH
Confidence 88887643 444 888772 34444443333333
No 439
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.82 E-value=7.6e-09 Score=78.63 Aligned_cols=70 Identities=30% Similarity=0.384 Sum_probs=47.5
Q ss_pred CCCCCHHHHHH----HHHHHHH--hcCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHHhhc
Q psy6940 24 PNWTVGGQVRR----VSIAVTL--LHSPSLVILDEP---TSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQAN 93 (123)
Q Consensus 24 ~~~LSgGqrqr----v~iaraL--~~~p~lliLDEP---t~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~~~d 93 (123)
..++|.|+.+. ..++.++ +.+|+++++||| |+++|+... ...++..+.+. +.++|++||+.+....+|
T Consensus 83 ~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 83 SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHELTELEG 160 (216)
T ss_pred hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHHHHHHhh
Confidence 34566666553 3466655 469999999999 888887542 34445555555 889999999975544355
Q ss_pred ce
Q psy6940 94 TV 95 (123)
Q Consensus 94 ~v 95 (123)
++
T Consensus 161 ~~ 162 (216)
T cd03284 161 KL 162 (216)
T ss_pred cC
Confidence 43
No 440
>PRK14079 recF recombination protein F; Provisional
Probab=98.76 E-value=1.3e-08 Score=82.49 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6940 25 NWTVGGQVRRVSIAVTLL---------HSPSLVILDEPTSGLDPVLANIFWRYLNR 71 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~---------~~p~lliLDEPt~gLD~~~~~~i~~~l~~ 71 (123)
..+|+|||+++++|..|+ .+|++++||||+++||+..+..+.+.+..
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~ 317 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAAS 317 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhc
Confidence 467999999999999999 89999999999999999999999888865
No 441
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.73 E-value=2.4e-08 Score=66.46 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=38.8
Q ss_pred CCCCCCCCHHHHH-HHHHHHHH------hc------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6940 21 KLLPNWTVGGQVR-RVSIAVTL------LH------SPSLVILDEPTSGLDPVLANIFWRYLNR 71 (123)
Q Consensus 21 ~~~~~~LSgGqrq-rv~iaraL------~~------~p~lliLDEPt~gLD~~~~~~i~~~l~~ 71 (123)
.+..+.+||||+| .+.++.++ .. .|++++|||||+++|+...+.+++++++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4678899999994 44333332 22 3799999999999999999999998864
No 442
>KOG0064|consensus
Probab=98.73 E-value=1.1e-08 Score=87.34 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
..||||+|||+++||.+-++|+..+|||-|++..+.....+++..+. -|.+.+-+||.+.....
T Consensus 611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY 674 (728)
T ss_pred hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence 35899999999999999999999999999999999998888887654 58999999999987754
No 443
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.67 E-value=3.4e-08 Score=73.73 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHh
Q psy6940 30 GQVRRVSIAVTLLHSPSLVILDEPT-----SGLDPVLANIFWRYLNRLS 73 (123)
Q Consensus 30 Gqrqrv~iaraL~~~p~lliLDEPt-----~gLD~~~~~~i~~~l~~l~ 73 (123)
-+++++.||++++.+|+++++|||| ++|||..++.+.+.+++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999999876
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.56 E-value=3.2e-07 Score=70.14 Aligned_cols=67 Identities=19% Similarity=0.131 Sum_probs=52.8
Q ss_pred CCCCH--HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHhhC-CcEEEEEeCCHHHHHh
Q psy6940 25 NWTVG--GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY-LNRLSVQ-GQTIIITTHYIEEARQ 91 (123)
Q Consensus 25 ~~LSg--Gqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~-l~~l~~~-g~tviivtH~~~~~~~ 91 (123)
..+|. .+-+++.-....+.+|+++++|||++|.++.....+... ++.+.+. +.++|++||+++.+..
T Consensus 88 ~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 88 KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 34453 455555555555689999999999999999998888777 6677665 8999999999998765
No 445
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.48 E-value=3.2e-07 Score=84.08 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=72.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
......||||||-.++||..++ +..|+++|||.-++||..+..++.++|++.. .+.=.|+|||.......||+++
T Consensus 1061 ~~~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~~m~~ad~l~ 1139 (1163)
T COG1196 1061 LQSLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKGTMEAADRLV 1139 (1163)
T ss_pred ccchhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChHHHHHHHHHe
Confidence 3457789999999999998875 4569999999999999999999999999987 5667999999999999999999
Q ss_pred eeccccccc
Q psy6940 97 GGFFAPKLH 105 (123)
Q Consensus 97 ~~~~~~~~~ 105 (123)
|.-...+.+
T Consensus 1140 GVtm~~~Gv 1148 (1163)
T COG1196 1140 GVTMQEKGV 1148 (1163)
T ss_pred eeEeecCCc
Confidence 766655433
No 446
>PRK13695 putative NTPase; Provisional
Probab=98.40 E-value=8.2e-07 Score=64.58 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDE--PTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDE--Pt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
+...+|++++-+..+++..+.+|+++++|| |+.++|+. +.+.+.++.+.|.++|+++|+-.....+|++.
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~ 146 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRRSVHPFVQEIK 146 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECchhhHHHHHHHh
Confidence 355789999999999999999999999999 44455544 45555555556899999999853333377765
No 447
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.38 E-value=2.1e-06 Score=65.80 Aligned_cols=69 Identities=22% Similarity=0.162 Sum_probs=51.0
Q ss_pred CCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhhC-CcEEEEEeCCHHHHHh
Q psy6940 23 LPNWTV--GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF-WRYLNRLSVQ-GQTIIITTHYIEEARQ 91 (123)
Q Consensus 23 ~~~~LS--gGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tviivtH~~~~~~~ 91 (123)
....+| ..+-+++.-...-+.+|+++|+|||.+|.|+.....+ ...+..+.+. +.++|++||+.+....
T Consensus 87 ~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 87 IQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred cccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 334455 3455555555556779999999999999997776664 5677777765 8899999999987643
No 448
>KOG0964|consensus
Probab=98.34 E-value=3.4e-07 Score=81.96 Aligned_cols=82 Identities=24% Similarity=0.263 Sum_probs=69.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc---C-CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLH---S-PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~---~-p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
....+||||||--||||..++. + +++++|||--++||+..+..+..+|++++.. .-.|.+|-.++.+..||.+++
T Consensus 1093 ~~m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRpEll~vAdKfyg 1171 (1200)
T KOG0964|consen 1093 LEMEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRPELLSVADKFYG 1171 (1200)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccHHHHHHHHhhhc
Confidence 3456899999999999998863 4 4999999999999999999999999999865 557777778877777999998
Q ss_pred ecccccc
Q psy6940 98 GFFAPKL 104 (123)
Q Consensus 98 ~~~~~~~ 104 (123)
..|..+.
T Consensus 1172 V~f~nKv 1178 (1200)
T KOG0964|consen 1172 VKFENKV 1178 (1200)
T ss_pred eeecccc
Confidence 8775543
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.34 E-value=3.2e-06 Score=64.15 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEeCCCC---CCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 26 WTVGGQVRRVSIAVTLLH--SPSLVILDEPTS---GLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~--~p~lliLDEPt~---gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
..+.++++.+..+...+. +|+++++||||+ ..|+.....+.+.++.+++.|.|+++++|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~ 167 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAF 167 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcC
Confidence 456788899999999987 999999999995 455555555656666667778999999997643
No 450
>PF13175 AAA_15: AAA ATPase domain
Probab=98.33 E-value=1.9e-06 Score=69.14 Aligned_cols=68 Identities=26% Similarity=0.346 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh------cC-CC---EEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCCHHH
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLL------HS-PS---LVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYIEE 88 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~------~~-p~---lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~~~~ 88 (123)
..+...+|.|.++.+.|+..+. .+ +. ++++|||-+.|.|..++.+.+.|.++.. .+.-||++||.+..
T Consensus 336 ~~~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~i 414 (415)
T PF13175_consen 336 SIPLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPFI 414 (415)
T ss_pred cCChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChhh
Confidence 3477889999998888776653 12 22 9999999999999999999999999886 47899999998754
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.28 E-value=2.5e-06 Score=75.97 Aligned_cols=49 Identities=31% Similarity=0.464 Sum_probs=45.2
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 42 LHSPSLVILDEPTSGL-DPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 42 ~~~p~lliLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
..+|+++++|||+.+| |+...+.+.+.++..++.|.+++++||+++.+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~ 699 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE 699 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 5799999999999999 799999999999998888999999999998875
No 452
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.24 E-value=4.9e-06 Score=63.78 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 27 TVGGQVRRVSIAVTLL----HSPSLVILDEPTSGL----DPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 27 LSgGqrqrv~iaraL~----~~p~lliLDEPt~gL----D~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+|+++.++-.+.+.+- .+|+++++||||+++ |+...+.+.+.++++++.|.|++++ |+..
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t-~~~~ 163 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILT-ANPK 163 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEE-eccc
Confidence 5666555544444443 369999999999999 8888888999999887778876665 5443
No 453
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.22 E-value=3.8e-06 Score=75.16 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=49.9
Q ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 37 IAVTLLHSPSLVILDEPTSGL-DPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 37 iaraL~~~p~lliLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
|++++..+|+++++|||+.+| |+..++.+.+.++.+++.|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 567888999999999999999 7999999999999988789999999999998864
No 454
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.22 E-value=3.2e-06 Score=73.37 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhhCCcEEEEEeCCHHHH
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLH------SPSLVILDEPTSGLDPVLANIFWR-YLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~------~p~lliLDEPt~gLD~~~~~~i~~-~l~~l~~~g~tviivtH~~~~~ 89 (123)
.++..|||||+|-+++|-.++. +.++ |+||||+.||+..+..+.+ ++... +.=||+.|||-+.-
T Consensus 547 ~~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d~e~~ 617 (650)
T TIGR03185 547 IDKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTDEEVD 617 (650)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEechHhhC
Confidence 3678899999999866655442 4566 4699999999999999875 55543 34678888877654
No 455
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.09 E-value=2.6e-06 Score=64.99 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=39.5
Q ss_pred HHhcCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHH
Q psy6940 40 TLLHSPSLVILDEPTS------GLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87 (123)
Q Consensus 40 aL~~~p~lliLDEPt~------gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~ 87 (123)
+...+|+++|+| |++ ..|+.....+++.+.+++++ |.||++++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 345799999999 765 47999998999999888765 999999999764
No 456
>PF13166 AAA_13: AAA domain
Probab=98.07 E-value=2.7e-05 Score=67.60 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=59.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHh--c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--hCCcEEEEEeCCHHHHH
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLL--H-------SPSLVILDEPTSGLDPVLANIFWRYLNRLS--VQGQTIIITTHYIEEAR 90 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~--~-------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~--~~g~tviivtH~~~~~~ 90 (123)
.+...||-|||.-++||--|+ . +..++++|.|.|+||...+..+.+.|.++. ...+=||+-|||+.++.
T Consensus 496 ~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~~F~~ 575 (712)
T PF13166_consen 496 KPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRLKEEIKNSKFRQVIILTHNLYFFK 575 (712)
T ss_pred cccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHHHHHhhcCCcceEEEEeCcHHHHH
Confidence 457899999999999986552 3 578999999999999999999999999985 45667999999998875
Q ss_pred h
Q psy6940 91 Q 91 (123)
Q Consensus 91 ~ 91 (123)
.
T Consensus 576 ~ 576 (712)
T PF13166_consen 576 E 576 (712)
T ss_pred H
Confidence 4
No 457
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.05 E-value=2.8e-06 Score=66.23 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=56.1
Q ss_pred CCCCCCHHH--------HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHhhCCcEEEEEeCCHHHHHhhc
Q psy6940 23 LPNWTVGGQ--------VRRVSIAVTLLHSPSLVILDEPTSGLDPVLANI-FWRYLNRLSVQGQTIIITTHYIEEARQAN 93 (123)
Q Consensus 23 ~~~~LSgGq--------rqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~-i~~~l~~l~~~g~tviivtH~~~~~~~~d 93 (123)
....+|||+ +||+++||++..++++.+| ||+.+|+..... ++ +.++...+.|.|+++|++......|
T Consensus 126 ~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~p 201 (249)
T cd01128 126 SGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFP 201 (249)
T ss_pred CCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCC
Confidence 344569999 9999999999899999999 999999544332 43 4555556789999999999888777
Q ss_pred cee
Q psy6940 94 TVF 96 (123)
Q Consensus 94 ~v~ 96 (123)
.|.
T Consensus 202 aI~ 204 (249)
T cd01128 202 AID 204 (249)
T ss_pred eEE
Confidence 776
No 458
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.99 E-value=6.3e-05 Score=57.50 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=62.4
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hccee
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~ 96 (123)
+..+.....|.||-=.--+.+.+ ++.-++|||||-++|.|.-+-.+...++++.+.|.-+|++||.+-.+.. -.+|+
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~ 199 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIY 199 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEE
Confidence 44555677899995444444444 6788999999999999999999999999999889999999999987776 55555
No 459
>COG4637 Predicted ATPase [General function prediction only]
Probab=97.95 E-value=3.9e-05 Score=62.33 Aligned_cols=66 Identities=26% Similarity=0.411 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 25 NWTVGGQVRRVSIAVTLLH--SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~--~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
..||-|+.+-++++.+|.. .|.++++|||-.+|-|..-..+..+++..++.+ -||++||-.+.+..
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~ 336 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNA 336 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhh
Confidence 4899999999999999974 689999999999999999999999998876554 79999999988764
No 460
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.87 E-value=7.6e-05 Score=51.70 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTS----------GLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p~lliLDEPt~----------gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
...+.+..++...+++...+|+++++|||++ +.+....+.+.++.....+.+.|+|+++|.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 3445666677888899999999999999994 4455555666666655555699999999977543
No 461
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.82 E-value=9.4e-05 Score=58.37 Aligned_cols=46 Identities=24% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 36 SIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
....+.+++|+++++|||++ .+.+..++..+. .|.++|++||+...
T Consensus 186 ~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEEEEechhHH
Confidence 34444457999999999974 233444555443 69999999997655
No 462
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.75 E-value=7.4e-05 Score=66.52 Aligned_cols=50 Identities=30% Similarity=0.450 Sum_probs=44.3
Q ss_pred HhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 41 LLHSPSLVILDEPTSGLD-PVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 41 L~~~p~lliLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
+-.+|+++++|||+.+|| +..+..+.+.++..++.|.+++++||+++.+.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADID 682 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHh
Confidence 456899999999999999 77788899999988878999999999998765
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.68 E-value=2.4e-06 Score=71.97 Aligned_cols=73 Identities=26% Similarity=0.266 Sum_probs=53.5
Q ss_pred cCcchhcCCCCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH---
Q psy6940 14 TRDFALRKLLPNWTVGGQVRRVSIA--VTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE--- 88 (123)
Q Consensus 14 ~~l~~~~~~~~~~LSgGqrqrv~ia--raL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~--- 88 (123)
+++.++.++.+..+|+|++|||.|+ .++...|+.. +..++.++++++.+++.|.|+|+++|+.+.
T Consensus 103 ~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~ 172 (484)
T TIGR02655 103 FDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGP 172 (484)
T ss_pred CCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccc
Confidence 4445556667778888898888888 5555555433 466778899998888889999999998764
Q ss_pred -----H-Hh-hccee
Q psy6940 89 -----A-RQ-ANTVF 96 (123)
Q Consensus 89 -----~-~~-~d~v~ 96 (123)
+ +. ||.|+
T Consensus 173 ~~~~~~~e~laDgVI 187 (484)
T TIGR02655 173 IARYGVEEFVSDNVV 187 (484)
T ss_pred cccCCceeEeeeeEE
Confidence 2 34 77776
No 464
>KOG0933|consensus
Probab=97.59 E-value=3.4e-05 Score=69.66 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=64.7
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhc
Q psy6940 18 ALRKLLPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQAN 93 (123)
Q Consensus 18 ~~~~~~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d 93 (123)
+.+....++||||||-.||++..|+ ..++++||||.-++||-...+.|-.+|+..- .|.-.|+||=.-..+.+|+
T Consensus 1074 ~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF-~~sQFIVVSLKeGMF~NAN 1152 (1174)
T KOG0933|consen 1074 GIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHF-THSQFIVVSLKEGMFNNAN 1152 (1174)
T ss_pred ccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhC-CCCeEEEEEchhhccccch
Confidence 4566778899999999999887765 4679999999999999999999999998743 4667888887666666688
Q ss_pred ceee
Q psy6940 94 TVFG 97 (123)
Q Consensus 94 ~v~~ 97 (123)
+++.
T Consensus 1153 vLFr 1156 (1174)
T KOG0933|consen 1153 VLFR 1156 (1174)
T ss_pred hhhe
Confidence 8773
No 465
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.57 E-value=0.00025 Score=63.11 Aligned_cols=52 Identities=31% Similarity=0.466 Sum_probs=45.7
Q ss_pred HHhcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 40 TLLHSPSLVILDEPTSGLD-PVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 40 aL~~~p~lliLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.+..+|.++++|||...|| |...+.+.+.++..++.|.+++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 4567899999999999999 888889999999988788999999999987643
No 466
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.48 E-value=0.00055 Score=61.60 Aligned_cols=72 Identities=29% Similarity=0.282 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHHhhcc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLH--SPSLVILDEP---TSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQANT 94 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~--~p~lliLDEP---t~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~~~d~ 94 (123)
|......|--+..+..++.++-. ++.++|+||| |+.+|..+ ..+.++..+.+. |.+++++||+.+....+++
T Consensus 661 d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 661 DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence 45556678778888888888765 9999999999 88888433 456667777665 5899999999655433543
No 467
>KOG0962|consensus
Probab=97.46 E-value=0.00025 Score=65.71 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=53.2
Q ss_pred CCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh----hC-CcEEEEEeCCHHHHHh
Q psy6940 27 TVGGQVR------RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS----VQ-GQTIIITTHYIEEARQ 91 (123)
Q Consensus 27 LSgGqrq------rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~----~~-g~tviivtH~~~~~~~ 91 (123)
-|.||+= |+++|=.+..++.+|-|||||++||..+..-+...+.++. .+ +.-.|++|||-.++..
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~ 1259 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQL 1259 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHH
Confidence 4788874 7788889999999999999999999999988776655442 22 6789999999998753
No 468
>KOG0996|consensus
Probab=97.38 E-value=0.00017 Score=66.00 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=63.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
.+.+.+||||+|-.-++|..++. ..+++++||--++||..+.-.+..+|++.- ++.-.|+||=.-+.++-++|.+
T Consensus 1190 WK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErT-kNAQFIIISLRnnMFELa~rLv 1268 (1293)
T KOG0996|consen 1190 WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERT-KNAQFIIISLRNNMFELANRLV 1268 (1293)
T ss_pred hhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhc-cCCeEEEEEehhhHHHHHhhhe
Confidence 45789999999999999988874 569999999999999999999999998743 4667888887666666678877
Q ss_pred ee
Q psy6940 97 GG 98 (123)
Q Consensus 97 ~~ 98 (123)
|.
T Consensus 1269 GI 1270 (1293)
T KOG0996|consen 1269 GI 1270 (1293)
T ss_pred ee
Confidence 53
No 469
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.0013 Score=56.65 Aligned_cols=71 Identities=27% Similarity=0.432 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHh--cC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 25 NWTVGGQVRRVSIAVTLL--HS--PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~--~~--p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
..-||||--|+.+|.-.+ .. .+.+||||.-+|+--.....|-+.|+++.+ +.=|+.|||-+..+..+|.=+
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~-~~QVl~VTHlPQVAa~ad~H~ 504 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSE-HHQVLCVTHLPQVAAMADTHF 504 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhc-CceEEEEecHHHHHhhhcceE
Confidence 456999999999987554 22 569999999999999999999999999874 567999999999888866544
No 470
>KOG0018|consensus
Probab=97.30 E-value=0.00034 Score=63.61 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=66.6
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
.+-++..+||||+|-..++|.-++. ..+.++|||.-++||..+..++..+|+ ..+.-.|+||=..++...+|-
T Consensus 1044 KRFr~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvasyIr---~~~~Q~IvISLK~~~y~kada 1120 (1141)
T KOG0018|consen 1044 KRFRPMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVASYIR---SSNFQFIVISLKEEFYQKADA 1120 (1141)
T ss_pred cccCchhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHHHHh---cCCceEEEEeccHHHhhhhhc
Confidence 3456788999999999999988874 369999999999999999999999998 456778888888878777887
Q ss_pred eeeecccc
Q psy6940 95 VFGGFFAP 102 (123)
Q Consensus 95 v~~~~~~~ 102 (123)
.+| +|-.
T Consensus 1121 LVG-vyr~ 1127 (1141)
T KOG0018|consen 1121 LVG-VYRD 1127 (1141)
T ss_pred eee-eccC
Confidence 775 5533
No 471
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.00093 Score=53.93 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=36.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 48 VILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 48 liLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
+++|||+.+||+..+..+.+.+.+.. ++.++|++||+.+.+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVL 157 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhCh
Confidence 55789999999999999999998875 5788999999987654
No 472
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.96 E-value=0.002 Score=48.04 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 36 SIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
++.++|..+|+++++|||. |+.... ..+ +....|..++.++|..+.....+|++
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~---~~l-~~a~~G~~v~~t~Ha~~~~~~~~Rl~ 119 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR---LAL-TAAETGHLVMSTLHTNSAAKTIDRII 119 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH---HHH-HHHHcCCEEEEEecCCcHHHHHhHHH
Confidence 5778899999999999996 554432 223 34456899999999887654466665
No 473
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.86 E-value=0.00035 Score=51.38 Aligned_cols=66 Identities=14% Similarity=0.285 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH--HHh-hccee
Q psy6940 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE--ARQ-ANTVF 96 (123)
Q Consensus 29 gGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~--~~~-~d~v~ 96 (123)
.|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+...+|.+|++.+|.+.+ +.. ||.++
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv 128 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVI 128 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEE
Confidence 478899999999999999988777 7899999999999998876567899999998865 455 88887
No 474
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.61 E-value=0.0053 Score=51.38 Aligned_cols=57 Identities=12% Similarity=0.289 Sum_probs=43.7
Q ss_pred cCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHhhCCcEEEEEe-CCHHHHHh-hcceeeec
Q psy6940 43 HSPSLVILDEPTSGLDPV-LANIFWRYLNRLSVQGQTIIITT-HYIEEARQ-ANTVFGGF 99 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~-~~~~i~~~l~~l~~~g~tviivt-H~~~~~~~-~d~v~~~~ 99 (123)
.+|++|++|||...++.. ....++..+..+.+.|+.+|+++ |++..+.. .+++..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~ 252 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF 252 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHH
Confidence 479999999999888765 34678899988887777777776 78887766 66666443
No 475
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.56 E-value=0.026 Score=43.48 Aligned_cols=70 Identities=24% Similarity=0.214 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhh-CCcEEEEEeCCHHHHH
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTL--LHSPSLVILDEPTSGLDPVLANIFW-RYLNRLSV-QGQTIIITTHYIEEAR 90 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL--~~~p~lliLDEPt~gLD~~~~~~i~-~~l~~l~~-~g~tviivtH~~~~~~ 90 (123)
+.....+|.=+.-...++..+ +.+..++|+||+..|-++.....+. ..+..+.+ .+..++++||+.+...
T Consensus 97 d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 97 DSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 344556775444444444444 5678899999999999999988764 45566676 4888999999987654
No 476
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.56 E-value=0.008 Score=52.23 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=58.7
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHhc---CC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 21 KLLPNW-TVGGQVRRVSIAVTLLH---SP-----SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 21 ~~~~~~-LSgGqrqrv~iaraL~~---~p-----~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
+...++ ||-|++.-++++--|+. +| +++++|.|.+++|.......+..++..+.+++-||+-|||-.++.
T Consensus 523 g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHntYF~r 601 (758)
T COG4694 523 GQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHNTYFYR 601 (758)
T ss_pred CccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEeccceehH
Confidence 345555 99999999988766543 44 789999999999999999999999999888999999999976654
No 477
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.28 E-value=0.0072 Score=50.82 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLL-------HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~-------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
...+.|.|+|+|++.+.+.+ .++-++++|+||...|+. +++...+.+....|.+..+.||....++++..
T Consensus 218 ~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~ 294 (432)
T PRK06793 218 ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK 294 (432)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence 45788999999999998887 799999999999999995 55665666665458888888886555555443
No 478
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.11 E-value=0.012 Score=46.82 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
.-.+..+|-.+|+++++|||.+ .+.+++++.+...+.+++.++|..+.....+|+.
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~ 263 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLA 263 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHH
Confidence 3466778899999999999996 3456667666533346799999888544477765
No 479
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.06 E-value=0.1 Score=34.03 Aligned_cols=63 Identities=29% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHhhCCcEEEEEeCC
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR------YLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~------~l~~l~~~g~tviivtH~ 85 (123)
......+++..+..+.++--.+|+++++||+..-.+......... ........+..+|.++|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 57 KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 344567888888888888888899999999999999888776553 122223347788888884
No 480
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.05 E-value=0.023 Score=42.61 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=38.9
Q ss_pred cCCCEEEEeCC-----CCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH---------HHHHh-hccee
Q psy6940 43 HSPSLVILDEP-----TSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI---------EEARQ-ANTVF 96 (123)
Q Consensus 43 ~~p~lliLDEP-----t~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~---------~~~~~-~d~v~ 96 (123)
.+++.+++|=. +.+.|+..+..+.++++.+++.|.|+++++|.. ..+.. ||.++
T Consensus 106 ~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI 174 (224)
T TIGR03880 106 LGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVI 174 (224)
T ss_pred hCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEE
Confidence 47899999942 224445566778888888887899999999952 22445 77777
No 481
>PF13514 AAA_27: AAA domain
Probab=96.02 E-value=0.017 Score=53.24 Aligned_cols=69 Identities=22% Similarity=0.141 Sum_probs=53.1
Q ss_pred CCCCCCCHHHHH------HHHHHHHH-hcCCCE-EEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 22 LLPNWTVGGQVR------RVSIAVTL-LHSPSL-VILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 22 ~~~~~LSgGqrq------rv~iaraL-~~~p~l-liLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.++..||.|-+= |++++..+ -.++++ +|+|+||-+.|..-...++++|.++.+.+ =||+=||+...+..
T Consensus 1021 ~~~~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~-QVI~FTch~~l~~~ 1097 (1111)
T PF13514_consen 1021 VPVEELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRR-QVIYFTCHEHLVEL 1097 (1111)
T ss_pred eeHHHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCC-eEEEEeccHHHHHH
Confidence 467789999875 55666666 446666 99999999999999999999999988654 46666666666553
No 482
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=95.68 E-value=0.069 Score=48.32 Aligned_cols=70 Identities=21% Similarity=0.113 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHhh-CCcEEEEEeCCHHHHH
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTL--LHSPSLVILDEPTSGLDPVLANIFWR-YLNRLSV-QGQTIIITTHYIEEAR 90 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL--~~~p~lliLDEPt~gLD~~~~~~i~~-~l~~l~~-~g~tviivtH~~~~~~ 90 (123)
|.....+|-=+-.+..++..| +.++.++|+||+-.|-|+.....+.. ++..+.+ .|..++++||+.+...
T Consensus 646 d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 646 DDLASGRSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred cchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 344455665555555555555 57899999999987777777666544 4455555 5788999999887654
No 483
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.63 E-value=0.028 Score=47.28 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHH-----HHHh--cCCCEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHhh--CC
Q psy6940 25 NWTVGGQVRRVSIA-----VTLL--HSPSLVILD-----------------EP--TSGLDPVLANIFWRYLNRLSV--QG 76 (123)
Q Consensus 25 ~~LSgGqrqrv~ia-----raL~--~~p~lliLD-----------------EP--t~gLD~~~~~~i~~~l~~l~~--~g 76 (123)
.+-|.++|-+...+ --+. .+-=++++| || |.|+||.....+.+++.++.. +|
T Consensus 222 ~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~G 301 (438)
T PRK07721 222 SDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASG 301 (438)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCC
Confidence 45567887766533 2221 233466778 76 789999999999999998863 57
Q ss_pred c-----EEEEEeCCHHHHHhhccee
Q psy6940 77 Q-----TIIITTHYIEEARQANTVF 96 (123)
Q Consensus 77 ~-----tviivtH~~~~~~~~d~v~ 96 (123)
. ||++.+||+++ .-||++.
T Consensus 302 sIT~~~TVlv~~hdm~e-~i~d~v~ 325 (438)
T PRK07721 302 SITAFYTVLVDGDDMNE-PIADTVR 325 (438)
T ss_pred CeeeEEEEEEECCCCCc-hhhhhEE
Confidence 5 99999999985 2288877
No 484
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.47 E-value=0.03 Score=45.29 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 36 SIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
++.++|-.+|+++++||+. |+......++ .+..|.+|+.+.|..+.....+|+.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCHHHHHHHHH
Confidence 4778899999999999997 7776654333 3446999999999865543344443
No 485
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=95.33 E-value=0.03 Score=46.22 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 24 PNWTVGGQVRRVSIAVTLL---------HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~---------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
....|-||++-+++|.-|+ ..++|++|||-++-||+.-+..+++. .+ .+.=+++++=+.+.+.
T Consensus 273 ~~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~---~~~Q~fvT~t~~~~~~ 344 (363)
T COG1195 273 ADFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE---LGVQVFVTTTDLEDID 344 (363)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc---cCCeEEEEccCHHHhh
Confidence 3567999999998887666 47899999999999999999888876 33 3444666666666555
No 486
>PRK06893 DNA replication initiation factor; Validated
Probab=95.24 E-value=0.045 Score=41.65 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=34.6
Q ss_pred hcCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 42 LHSPSLVILDEPTSGL-DPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 42 ~~~p~lliLDEPt~gL-D~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..+++++++||+.... ++.....+++++.+..+.|++++++|++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4578999999998754 66667789999988877777777666643
No 487
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.075 Score=43.16 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=42.8
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 37 IAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 37 iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
++......--++|..+|-+.|-|..+..+.+++.++++.|+-|++.||.-..
T Consensus 253 L~lli~K~~~lIIIEnPEAHLHP~gQs~lg~llA~~a~~gvqvVveTHSdhi 304 (374)
T COG4938 253 LMLLIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHI 304 (374)
T ss_pred HHeeeecCCcEEEEcCchhhcCchhHHHHHHHHHHHHhcCcEEEEEechHHH
Confidence 3333344556888999999999999999999999999899999999995433
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.12 E-value=0.19 Score=33.21 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-----CCcEEEEEeCCHH
Q psy6940 33 RRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-----QGQTIIITTHYIE 87 (123)
Q Consensus 33 qrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-----~g~tviivtH~~~ 87 (123)
+..........++.++++||.-.. ++.....+.+.+..... .+.++|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 345556677788999999998765 55566677787777643 4788999998654
No 489
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.12 E-value=0.19 Score=41.69 Aligned_cols=54 Identities=20% Similarity=0.400 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHhh----CCcEEEEEeCCHHHH
Q psy6940 36 SIAVTLLHSPSLVILDE----------PTSGLDPVLANIFWRYLNRLSV----QGQTIIITTHYIEEA 89 (123)
Q Consensus 36 ~iaraL~~~p~lliLDE----------Pt~gLD~~~~~~i~~~l~~l~~----~g~tviivtH~~~~~ 89 (123)
.+..|....|.++++|| +.++.|....+.+.+++..+.. .+..||++||+++.+
T Consensus 230 lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 230 VFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 45556678999999999 4567787777777777776532 367899999987655
No 490
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.48 E-value=0.17 Score=37.08 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=43.9
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH-HHh-hccee
Q psy6940 33 RRVSIAVTLL--HSPSLVILDEPTSG--LDPVLANIFWRYLNRLSVQGQTIIITTHYIEE-ARQ-ANTVF 96 (123)
Q Consensus 33 qrv~iaraL~--~~p~lliLDEPt~g--LD~~~~~~i~~~l~~l~~~g~tviivtH~~~~-~~~-~d~v~ 96 (123)
+-...|+..+ .+.+++||||-... ++....+.+.++|++ +.++..||++.++... +.. ||.|.
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~-rp~~~evIlTGr~~p~~l~e~AD~VT 150 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELIEAADLVT 150 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc-CCCCCEEEEECCCCCHHHHHhCceee
Confidence 3445555555 46799999999765 444455678888865 4457899999998754 444 88775
No 491
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=93.46 E-value=0.11 Score=45.44 Aligned_cols=63 Identities=25% Similarity=0.476 Sum_probs=48.5
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh--hccee
Q psy6940 33 RRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ--ANTVF 96 (123)
Q Consensus 33 qrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~--~d~v~ 96 (123)
+.|.....+- ..|.+++.+||-+.|-|..+..+++++..+. -+.=+|++||-...+.. -+.++
T Consensus 286 ~~l~~~~~~~~~~~~r~~ILLiEEPEahLHPq~q~~l~~ll~~l~-~~~Q~IvTThS~~~~s~~dl~si~ 354 (581)
T COG3593 286 QLLQAIGSLELERVARPNILLIEEPEAHLHPQLQAVLWDLLNNLP-LGLQRIVTTHSPHLLSLADLDSIC 354 (581)
T ss_pred HHHHHHhHhhhhhhcccceEEEeCchhhcCHHHHHHHHHHHhcCC-cceEEEEEcCCcccccccCcccEE
Confidence 4444444442 2455999999999999999999999988876 67889999999988875 44554
No 492
>PRK04296 thymidine kinase; Provisional
Probab=93.35 E-value=0.26 Score=36.39 Aligned_cols=50 Identities=20% Similarity=0.076 Sum_probs=36.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC---------H-HHHHh-hccee
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY---------I-EEARQ-ANTVF 96 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~---------~-~~~~~-~d~v~ 96 (123)
.+++++++||- --++. +++.++++.++..|.+||++.++ . ..+.. ||.|.
T Consensus 77 ~~~dvviIDEa-q~l~~---~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 77 EKIDCVLIDEA-QFLDK---EQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCCEEEEEcc-ccCCH---HHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 47899999998 22443 33666777667789999999999 2 23334 88887
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.12 E-value=0.088 Score=44.51 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=35.7
Q ss_pred cCCCEEEEeCC---CCCCCHHH--HHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEP---TSGLDPVL--ANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEP---t~gLD~~~--~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+|+.+++|=- ++++|... +..+.++++.+++.|.|+|+++|...
T Consensus 129 ~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 129 IGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred hCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCcc
Confidence 58999999954 45677655 56788888888778999999999764
No 494
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=92.90 E-value=0.32 Score=42.89 Aligned_cols=49 Identities=29% Similarity=0.404 Sum_probs=40.9
Q ss_pred hcCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 42 LHSPSLVILDEPTSGLD-PVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
-..|.++++||.-.-++ +...+.+.++++..++.|..++++||++..+.
T Consensus 627 ~~~~~~i~iDEa~~ll~~~~~~~~i~~~~r~~RK~~~~~~~~TQ~~~d~~ 676 (785)
T TIGR00929 627 DGRPFLIIIDEAWQYLGNPVFAAKIRDWLKTLRKANGIVVLATQSINDAL 676 (785)
T ss_pred CCCCeEEEEechhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence 35789999999887774 77777788888888888999999999998764
No 495
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=92.50 E-value=0.41 Score=40.58 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH-----HHH----------HHHHHHHHhh-CCcEEEEEeCCHHH
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-----ANI----------FWRYLNRLSV-QGQTIIITTHYIEE 88 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~-----~~~----------i~~~l~~l~~-~g~tviivtH~~~~ 88 (123)
.+=||-.-|=..|.-|+=...++|++||=|++-..-. +.. +.+.++.+.+ .|.+.|+|.=-...
T Consensus 321 ~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgd 400 (448)
T PF09818_consen 321 ENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGD 400 (448)
T ss_pred cCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchh
Confidence 4458999999999999999999999999998765443 222 3445666644 48877777766666
Q ss_pred HHh-hccee
Q psy6940 89 ARQ-ANTVF 96 (123)
Q Consensus 89 ~~~-~d~v~ 96 (123)
... ||+|+
T Consensus 401 y~~vAD~Vi 409 (448)
T PF09818_consen 401 YFDVADRVI 409 (448)
T ss_pred hHhhCCEEE
Confidence 655 99998
No 496
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=92.50 E-value=0.21 Score=35.88 Aligned_cols=51 Identities=8% Similarity=0.017 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHH--HHHHHhc-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q psy6940 21 KLLPNWTVGGQVRRVS--IAVTLLH-SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ 75 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~--iaraL~~-~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~ 75 (123)
..++..+++|+++++. +.+.+-. +++++ |++++|+.+.+.+++.+.++.++
T Consensus 142 ~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 142 LTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3456678999998877 5555543 34443 99999999999999999887654
No 497
>COG1106 Predicted ATPases [General function prediction only]
Probab=92.26 E-value=0.53 Score=39.02 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=57.5
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHH
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLL-HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEAR 90 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~-~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~ 90 (123)
.+.+....|-|-++..-+.-++. .+-+++++||+-++|-|.....+.+.+.+-... ...++++||+.+.+.
T Consensus 245 ~~~~~~~~~~G~kk~~~i~~~l~~~~~k~l~iDEie~~lHp~lm~~~l~~~~~~~~~~niq~~~TTH~~e~id 317 (371)
T COG1106 245 IKIPLNEEGEGFKKALIIVPLLSDLNDKVLLIDEIENGLHPSLMILILETLEDKVKNNNIQVFLTTHSTEFID 317 (371)
T ss_pred cceeeeeecchHHHHHHHHhhhhhcCCceEEeehhhhccCHHHHHHHHHHHHhhcccceEEEEeecccHHHHH
Confidence 34556678899999888888774 456899999999999999999988888765544 578899999987664
No 498
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.03 E-value=0.7 Score=38.90 Aligned_cols=50 Identities=10% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 38 AVTLLHSPSLVILDEP-TSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 38 araL~~~p~lliLDEP-t~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+.-..++++|++||. +-..+....+.++.++..+...|+.||++++...
T Consensus 200 ~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 200 FKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 4455688999999999 4556678888999999998877888899888543
No 499
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.00 E-value=0.27 Score=37.62 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=35.6
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCCCH-------H-HHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 32 VRRVSIAVTLL--HSPSLVILDEPTSGLDP-------V-LANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 32 rqrv~iaraL~--~~p~lliLDEPt~gLD~-------~-~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
...+..++.++ .+|+++++|.++.-.+. . ....+...|++++++ |+||++++|--
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 34455555554 47999999997653322 1 233455667777554 99999999843
No 500
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.37 E-value=0.82 Score=34.15 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCC--CHHHHHHHH-HHHHHHhhCCcEEEEEeCCHH--------HHHh-hccee
Q psy6940 44 SPSLVILDEPTSGL--DPVLANIFW-RYLNRLSVQGQTIIITTHYIE--------EARQ-ANTVF 96 (123)
Q Consensus 44 ~p~lliLDEPt~gL--D~~~~~~i~-~~l~~l~~~g~tviivtH~~~--------~~~~-~d~v~ 96 (123)
+|+.+++|-|+.-+ +|...+.+. .+.+.+++.|.|+|+++|... .++. ||.++
T Consensus 121 ~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI 185 (229)
T TIGR03881 121 GHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGII 185 (229)
T ss_pred CceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEE
Confidence 57888999887532 443333433 333334556999999999543 2344 67666
Done!