Query psy6940
Match_columns 123
No_of_seqs 294 out of 1907
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:39:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.4E-29 4.8E-34 204.7 12.5 107 7-114 144-252 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 5.8E-30 2E-34 199.4 9.8 107 7-114 124-232 (275)
3 1b0u_A Histidine permease; ABC 100.0 2.5E-29 8.6E-34 193.9 12.2 106 7-113 133-240 (262)
4 2olj_A Amino acid ABC transpor 100.0 4E-29 1.4E-33 193.5 12.9 106 7-113 140-246 (263)
5 1g6h_A High-affinity branched- 100.0 2.9E-29 1E-33 192.8 10.8 105 7-112 134-239 (257)
6 2onk_A Molybdate/tungstate ABC 100.0 3.6E-29 1.2E-33 191.3 10.0 106 7-113 107-214 (240)
7 3tif_A Uncharacterized ABC tra 100.0 7.8E-29 2.7E-33 188.4 11.4 99 8-107 126-226 (235)
8 4g1u_C Hemin import ATP-bindin 100.0 5.5E-29 1.9E-33 192.7 10.7 107 7-114 122-236 (266)
9 3fvq_A Fe(3+) IONS import ATP- 100.0 7.6E-29 2.6E-33 199.9 11.5 107 7-114 119-227 (359)
10 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-28 4.4E-33 189.8 12.0 105 7-112 127-232 (256)
11 3rlf_A Maltose/maltodextrin im 100.0 1.1E-28 3.7E-33 200.4 11.6 107 7-114 114-222 (381)
12 2pcj_A ABC transporter, lipopr 100.0 1.7E-28 5.7E-33 185.2 11.7 97 7-104 121-217 (224)
13 1ji0_A ABC transporter; ATP bi 100.0 1.4E-28 4.8E-33 187.4 11.4 104 8-112 120-225 (240)
14 2nq2_C Hypothetical ABC transp 100.0 2.3E-28 7.9E-33 187.9 11.8 96 7-103 109-206 (253)
15 1z47_A CYSA, putative ABC-tran 100.0 2.4E-28 8.1E-33 196.7 11.7 106 7-113 126-233 (355)
16 2yz2_A Putative ABC transporte 100.0 1.6E-28 5.5E-33 189.7 10.3 104 7-111 117-223 (266)
17 2yyz_A Sugar ABC transporter, 100.0 3.3E-28 1.1E-32 196.0 11.9 106 7-113 114-221 (359)
18 1oxx_K GLCV, glucose, ABC tran 100.0 2.3E-28 8E-33 196.3 10.7 106 7-113 121-228 (353)
19 3d31_A Sulfate/molybdate ABC t 100.0 3.3E-28 1.1E-32 195.3 11.3 106 7-113 108-215 (348)
20 1g29_1 MALK, maltose transport 100.0 4.5E-28 1.5E-32 195.9 11.6 107 7-114 120-228 (372)
21 2it1_A 362AA long hypothetical 100.0 3E-28 1E-32 196.4 10.2 106 7-113 114-221 (362)
22 1v43_A Sugar-binding transport 99.9 5.4E-28 1.8E-32 195.6 10.9 106 7-113 122-229 (372)
23 2ihy_A ABC transporter, ATP-bi 99.9 2.7E-28 9.1E-33 190.1 8.7 101 7-108 142-245 (279)
24 2qi9_C Vitamin B12 import ATP- 99.9 7.8E-28 2.7E-32 184.8 10.9 99 7-106 107-213 (249)
25 2zu0_C Probable ATP-dependent 99.9 2.3E-27 7.7E-32 183.5 11.2 106 7-113 143-252 (267)
26 2d2e_A SUFC protein; ABC-ATPas 99.9 1.4E-27 4.8E-32 182.8 9.3 104 7-111 122-229 (250)
27 2ixe_A Antigen peptide transpo 99.9 5.3E-27 1.8E-31 181.9 11.1 104 9-113 137-243 (271)
28 1sgw_A Putative ABC transporte 99.9 9.9E-28 3.4E-32 180.8 5.3 89 7-96 115-204 (214)
29 2ff7_A Alpha-hemolysin translo 99.9 1.1E-26 3.8E-31 177.8 11.1 104 8-113 116-230 (247)
30 2pjz_A Hypothetical protein ST 99.9 1.3E-26 4.4E-31 179.4 10.4 104 7-114 108-214 (263)
31 1mv5_A LMRA, multidrug resista 99.9 1.8E-26 6E-31 175.8 9.5 105 8-114 110-225 (243)
32 1yqt_A RNAse L inhibitor; ATP- 99.9 6.8E-26 2.3E-30 190.0 12.1 91 6-96 138-229 (538)
33 2ghi_A Transport protein; mult 99.9 8E-26 2.7E-30 174.2 11.2 92 21-114 150-241 (260)
34 3j16_B RLI1P; ribosome recycli 99.9 7E-26 2.4E-30 192.6 11.4 107 7-114 448-558 (608)
35 3bk7_A ABC transporter ATP-bin 99.9 1.3E-25 4.4E-30 190.8 12.1 91 6-96 208-299 (607)
36 3ozx_A RNAse L inhibitor; ATP 99.9 5.7E-26 2E-30 190.7 9.7 90 7-96 366-457 (538)
37 3nh6_A ATP-binding cassette SU 99.9 1.8E-25 6.2E-30 176.6 11.2 93 20-114 184-276 (306)
38 3j16_B RLI1P; ribosome recycli 99.9 5.7E-25 1.9E-29 187.1 12.2 90 7-96 202-292 (608)
39 3ozx_A RNAse L inhibitor; ATP 99.9 5.5E-25 1.9E-29 184.7 12.0 90 6-96 118-208 (538)
40 3gd7_A Fusion complex of cysti 99.9 1.6E-25 5.5E-30 182.0 7.6 106 7-114 125-241 (390)
41 1yqt_A RNAse L inhibitor; ATP- 99.9 4E-25 1.4E-29 185.3 10.0 91 7-97 382-474 (538)
42 3ux8_A Excinuclease ABC, A sub 99.9 5.7E-25 2E-29 187.3 11.0 105 10-114 185-297 (670)
43 2cbz_A Multidrug resistance-as 99.9 4.9E-25 1.7E-29 167.6 9.1 92 20-113 121-215 (237)
44 2pze_A Cystic fibrosis transme 99.9 7.7E-25 2.6E-29 165.6 9.8 90 22-113 126-216 (229)
45 3bk7_A ABC transporter ATP-bin 99.9 1.1E-24 3.6E-29 185.2 11.3 90 7-96 452-543 (607)
46 3ux8_A Excinuclease ABC, A sub 99.9 2.5E-24 8.5E-29 183.4 12.5 107 8-114 524-639 (670)
47 3b5x_A Lipid A export ATP-bind 99.9 2.7E-24 9.3E-29 180.8 11.8 105 8-114 451-566 (582)
48 2yl4_A ATP-binding cassette SU 99.9 4.4E-24 1.5E-28 179.9 11.8 102 8-111 454-566 (595)
49 3b60_A Lipid A export ATP-bind 99.9 2.7E-24 9.3E-29 180.8 10.3 105 8-114 451-566 (582)
50 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 4.8E-24 1.6E-28 152.8 8.7 77 20-97 51-134 (148)
51 3qf4_A ABC transporter, ATP-bi 99.9 1E-23 3.5E-28 177.9 11.9 94 19-114 472-565 (587)
52 3pih_A Uvrabc system protein A 99.9 9.8E-24 3.4E-28 186.2 12.2 108 8-115 786-902 (916)
53 3qf4_B Uncharacterized ABC tra 99.9 8.5E-24 2.9E-28 178.5 11.1 104 9-114 463-577 (598)
54 2bbs_A Cystic fibrosis transme 99.9 6E-24 2E-28 166.5 9.4 89 23-113 156-245 (290)
55 4a82_A Cystic fibrosis transme 99.9 1.3E-23 4.6E-28 176.6 11.0 91 22-114 473-563 (578)
56 3pih_A Uvrabc system protein A 99.9 4.4E-23 1.5E-27 182.0 10.0 106 9-114 446-559 (916)
57 2vf7_A UVRA2, excinuclease ABC 99.9 6.6E-23 2.3E-27 179.6 10.7 107 8-114 711-826 (842)
58 2r6f_A Excinuclease ABC subuni 99.9 8.8E-23 3E-27 180.6 11.4 107 8-114 826-941 (972)
59 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 8.2E-23 2.8E-27 163.8 8.8 77 21-97 274-356 (365)
60 2ygr_A Uvrabc system protein A 99.9 2E-22 6.8E-27 178.8 11.5 107 8-114 844-959 (993)
61 2iw3_A Elongation factor 3A; a 99.9 1.9E-22 6.6E-27 178.9 10.4 87 7-96 528-616 (986)
62 2r6f_A Excinuclease ABC subuni 99.9 2.2E-22 7.5E-27 178.1 9.9 105 10-114 487-599 (972)
63 2ygr_A Uvrabc system protein A 99.9 4.3E-22 1.5E-26 176.6 11.6 106 10-115 504-617 (993)
64 3g5u_A MCG1178, multidrug resi 99.9 5.1E-22 1.7E-26 179.6 10.5 90 23-114 1168-1257(1284)
65 2vf7_A UVRA2, excinuclease ABC 99.9 1E-21 3.4E-26 172.2 10.1 105 10-114 362-474 (842)
66 2iw3_A Elongation factor 3A; a 99.9 7.5E-22 2.6E-26 175.1 8.9 95 7-105 880-977 (986)
67 4f4c_A Multidrug resistance pr 99.8 9.5E-22 3.2E-26 178.2 8.3 90 23-114 1214-1303(1321)
68 3g5u_A MCG1178, multidrug resi 99.8 6.1E-21 2.1E-25 172.6 11.7 92 21-114 521-612 (1284)
69 4aby_A DNA repair protein RECN 99.8 1.4E-20 4.9E-25 150.4 9.5 70 27-97 296-367 (415)
70 3qkt_A DNA double-strand break 99.8 1E-20 3.6E-25 149.5 7.9 79 19-97 241-325 (339)
71 3kta_B Chromosome segregation 99.8 4.4E-20 1.5E-24 135.2 10.5 78 20-98 58-139 (173)
72 4f4c_A Multidrug resistance pr 99.8 1.3E-20 4.4E-25 170.8 8.0 92 21-114 549-640 (1321)
73 4ad8_A DNA repair protein RECN 99.8 3.5E-20 1.2E-24 153.7 8.4 76 21-97 391-469 (517)
74 1e69_A Chromosome segregation 99.8 1.3E-19 4.6E-24 142.1 9.7 77 19-96 212-292 (322)
75 4gp7_A Metallophosphoesterase; 99.8 2.9E-20 9.8E-25 133.9 1.8 73 24-96 81-169 (171)
76 1w1w_A Structural maintenance 99.7 4.7E-18 1.6E-22 137.7 10.0 80 21-100 328-411 (430)
77 1ye8_A Protein THEP1, hypothet 99.7 3.8E-18 1.3E-22 124.5 4.9 73 19-94 69-152 (178)
78 3auy_A DNA double-strand break 99.7 3.3E-17 1.1E-21 130.8 8.4 74 22-97 276-357 (371)
79 2o5v_A DNA replication and rep 99.7 4.5E-17 1.5E-21 130.9 5.2 85 21-112 259-353 (359)
80 2npi_A Protein CLP1; CLP1-PCF1 99.6 7.2E-18 2.5E-22 139.3 -0.8 97 9-113 220-336 (460)
81 1tf7_A KAIC; homohexamer, hexa 99.6 4E-16 1.4E-20 129.6 5.4 91 4-96 332-438 (525)
82 3b85_A Phosphate starvation-in 99.6 4.4E-17 1.5E-21 121.8 -2.6 56 30-91 108-163 (208)
83 1tq4_A IIGP1, interferon-induc 99.4 1.3E-15 4.5E-20 124.5 -4.5 96 6-103 136-255 (413)
84 3thx_B DNA mismatch repair pro 99.4 1.5E-13 5E-18 121.6 4.6 84 10-94 719-804 (918)
85 3thx_A DNA mismatch repair pro 99.3 6.5E-12 2.2E-16 111.3 9.4 76 21-96 716-795 (934)
86 1znw_A Guanylate kinase, GMP k 99.3 2.3E-14 7.8E-19 105.2 -6.3 73 14-97 122-200 (207)
87 1nlf_A Regulatory protein REPA 99.3 5.2E-12 1.8E-16 96.4 6.5 78 9-89 101-184 (279)
88 2o8b_B DNA mismatch repair pro 99.3 8.5E-12 2.9E-16 111.3 7.7 84 12-96 837-923 (1022)
89 1cr0_A DNA primase/helicase; R 99.2 2.5E-11 8.4E-16 93.1 7.6 63 23-86 126-197 (296)
90 2w0m_A SSO2452; RECA, SSPF, un 99.1 7.6E-11 2.6E-15 85.6 6.6 71 26-96 103-187 (235)
91 2pt7_A CAG-ALFA; ATPase, prote 99.1 1.7E-11 5.6E-16 97.0 3.1 62 29-97 225-286 (330)
92 2ehv_A Hypothetical protein PH 99.1 5.4E-11 1.9E-15 87.7 4.3 69 28-96 119-203 (251)
93 1ewq_A DNA mismatch repair pro 99.0 4.2E-10 1.4E-14 98.0 6.3 68 22-92 631-704 (765)
94 3b9q_A Chloroplast SRP recepto 98.9 2.7E-11 9.1E-16 94.9 -2.8 62 13-84 191-255 (302)
95 1wb9_A DNA mismatch repair pro 98.9 8.8E-10 3E-14 96.3 5.8 73 22-95 665-739 (800)
96 1tf7_A KAIC; homohexamer, hexa 98.9 4.3E-11 1.5E-15 99.3 -2.3 64 33-96 126-205 (525)
97 2cvh_A DNA repair and recombin 98.9 2.3E-09 7.9E-14 77.5 6.8 73 24-96 82-180 (220)
98 3sop_A Neuronal-specific septi 98.9 2.5E-11 8.6E-16 93.6 -4.1 65 17-89 89-153 (270)
99 1z6g_A Guanylate kinase; struc 98.9 6.9E-12 2.4E-16 93.2 -8.6 73 25-97 121-206 (218)
100 2og2_A Putative signal recogni 98.8 1.1E-10 3.7E-15 93.8 -2.5 63 13-85 248-313 (359)
101 2eyu_A Twitching motility prot 98.8 7.9E-09 2.7E-13 79.2 5.7 56 34-96 88-143 (261)
102 4a74_A DNA repair and recombin 98.7 5.1E-09 1.8E-13 76.1 3.8 70 27-96 100-195 (231)
103 3aez_A Pantothenate kinase; tr 98.7 8E-11 2.7E-15 92.6 -7.3 80 8-96 159-240 (312)
104 2v9p_A Replication protein E1; 98.6 1.3E-10 4.3E-15 91.7 -8.1 67 24-113 198-264 (305)
105 3jvv_A Twitching mobility prot 98.6 3.1E-08 1.1E-12 79.2 5.3 54 36-96 188-241 (356)
106 1pzn_A RAD51, DNA repair and r 98.6 2.1E-08 7.3E-13 79.6 4.2 63 28-90 208-290 (349)
107 1pui_A ENGB, probable GTP-bind 98.5 3.5E-08 1.2E-12 70.8 2.9 58 21-78 144-202 (210)
108 2obl_A ESCN; ATPase, hydrolase 98.5 3.6E-09 1.2E-13 84.4 -3.6 63 22-96 167-237 (347)
109 2qnr_A Septin-2, protein NEDD5 98.4 2.1E-09 7E-14 83.7 -5.9 60 20-87 107-168 (301)
110 3asz_A Uridine kinase; cytidin 98.4 3.1E-11 1E-15 87.8 -15.5 78 9-86 72-161 (211)
111 3ec2_A DNA replication protein 98.4 8.3E-07 2.8E-11 62.9 7.4 47 41-87 97-144 (180)
112 2i3b_A HCR-ntpase, human cance 98.4 1.7E-08 5.7E-13 74.1 -1.7 66 22-91 79-156 (189)
113 2dpy_A FLII, flagellum-specifi 98.3 3.2E-08 1.1E-12 81.1 -2.3 62 24-96 256-326 (438)
114 2jeo_A Uridine-cytidine kinase 98.2 3.4E-08 1.2E-12 73.9 -3.4 63 16-89 106-168 (245)
115 2kjq_A DNAA-related protein; s 98.1 3.6E-06 1.2E-10 59.1 4.8 45 40-85 79-124 (149)
116 1n0w_A DNA repair protein RAD5 98.0 1.2E-05 4.2E-10 58.5 6.6 62 27-88 99-176 (243)
117 1rj9_A FTSY, signal recognitio 98.0 8.9E-07 3E-11 69.2 0.1 54 27-87 203-259 (304)
118 2bdt_A BH3686; alpha-beta prot 98.0 2.8E-08 9.6E-13 71.0 -8.0 81 28-115 96-184 (189)
119 1sxj_E Activator 1 40 kDa subu 98.0 8.4E-06 2.9E-10 62.9 5.4 46 41-88 131-176 (354)
120 2ewv_A Twitching motility prot 97.8 2.2E-05 7.4E-10 62.7 5.0 56 34-96 199-254 (372)
121 3szr_A Interferon-induced GTP- 97.8 9.3E-06 3.2E-10 68.7 2.7 48 42-89 144-199 (608)
122 2qag_C Septin-7; cell cycle, c 97.8 2.7E-06 9.1E-11 69.4 -0.8 56 27-87 119-178 (418)
123 2bbw_A Adenylate kinase 4, AK4 97.7 1.5E-07 5.1E-12 70.2 -7.8 51 18-75 144-199 (246)
124 1nij_A Hypothetical protein YJ 97.6 5.9E-06 2E-10 64.4 -0.6 50 26-87 141-190 (318)
125 1lw7_A Transcriptional regulat 97.6 9.1E-06 3.1E-10 64.1 0.3 62 24-85 256-328 (365)
126 2r6a_A DNAB helicase, replicat 97.6 0.00011 3.7E-09 59.7 6.7 59 24-84 293-362 (454)
127 2dr3_A UPF0273 protein PH0284; 97.5 0.00021 7.2E-09 51.9 6.4 54 43-96 127-192 (247)
128 1udx_A The GTP-binding protein 97.4 2.6E-05 9E-10 63.5 0.6 59 21-84 247-306 (416)
129 3lda_A DNA repair protein RAD5 97.3 0.00022 7.6E-09 57.7 5.1 43 43-85 272-327 (400)
130 1odf_A YGR205W, hypothetical 3 97.3 2.5E-06 8.5E-11 66.2 -6.4 39 22-60 130-168 (290)
131 2xau_A PRE-mRNA-splicing facto 97.3 0.00012 4.1E-09 63.5 3.4 72 22-93 186-260 (773)
132 1s96_A Guanylate kinase, GMP k 97.2 0.00055 1.9E-08 50.8 5.7 45 38-91 101-145 (219)
133 1zp6_A Hypothetical protein AT 97.0 6.1E-05 2.1E-09 53.1 -1.1 55 21-83 104-158 (191)
134 2ce7_A Cell division protein F 97.0 0.0013 4.6E-08 54.3 6.3 61 29-89 93-167 (476)
135 2zr9_A Protein RECA, recombina 96.9 0.0019 6.6E-08 51.0 6.4 55 33-87 126-199 (349)
136 2f1r_A Molybdopterin-guanine d 96.9 9.1E-06 3.1E-10 58.6 -6.6 51 26-76 103-163 (171)
137 2e87_A Hypothetical protein PH 96.8 0.0031 1E-07 49.4 6.7 67 19-87 224-293 (357)
138 4a1f_A DNAB helicase, replicat 96.5 0.0036 1.2E-07 49.6 5.4 75 2-84 81-164 (338)
139 1ls1_A Signal recognition part 96.3 0.012 4.2E-07 45.2 7.4 56 28-84 164-220 (295)
140 3euj_A Chromosome partition pr 96.2 0.0092 3.1E-07 49.5 6.3 70 21-96 374-461 (483)
141 2ius_A DNA translocase FTSK; n 96.0 0.00017 5.9E-09 60.3 -5.0 61 26-87 268-343 (512)
142 1lw7_A Transcriptional regulat 95.9 0.0039 1.3E-07 48.9 2.9 29 26-54 296-329 (365)
143 2px0_A Flagellar biosynthesis 95.9 0.0065 2.2E-07 46.9 4.1 60 33-96 173-237 (296)
144 2qag_B Septin-6, protein NEDD5 95.8 0.0048 1.7E-07 50.5 3.0 58 26-86 161-219 (427)
145 1vma_A Cell division protein F 95.7 0.0061 2.1E-07 47.4 3.1 31 25-55 164-197 (306)
146 2z4s_A Chromosomal replication 95.4 0.026 8.9E-07 45.6 5.8 44 43-86 193-237 (440)
147 1ni3_A YCHF GTPase, YCHF GTP-b 94.7 0.00022 7.7E-09 57.6 -8.1 57 44-102 139-199 (392)
148 1fnn_A CDC6P, cell division co 94.6 0.022 7.6E-07 43.6 3.3 47 43-90 124-173 (389)
149 1oix_A RAS-related protein RAB 94.3 0.024 8.2E-07 39.8 2.6 36 34-71 153-188 (191)
150 2oap_1 GSPE-2, type II secreti 94.2 1.3E-05 4.5E-10 66.7 -16.9 59 24-94 398-459 (511)
151 2gza_A Type IV secretion syste 94.1 0.029 9.8E-07 44.3 3.0 62 28-96 236-297 (361)
152 2rcn_A Probable GTPase ENGC; Y 94.1 0.033 1.1E-06 44.4 3.4 32 9-41 297-328 (358)
153 3b9p_A CG5977-PA, isoform A; A 93.9 0.17 5.8E-06 37.6 6.7 60 28-87 97-170 (297)
154 3bh0_A DNAB-like replicative h 93.2 0.13 4.3E-06 39.6 5.1 53 27-84 134-189 (315)
155 1in4_A RUVB, holliday junction 92.4 0.0051 1.8E-07 47.6 -3.8 56 14-91 151-207 (334)
156 3e70_C DPA, signal recognition 92.3 0.14 4.7E-06 40.1 4.3 49 31-86 230-279 (328)
157 1g5t_A COB(I)alamin adenosyltr 92.0 0.1 3.6E-06 38.3 3.0 64 32-96 106-175 (196)
158 2f9l_A RAB11B, member RAS onco 91.5 0.11 3.9E-06 36.3 2.7 36 35-72 130-165 (199)
159 2qm8_A GTPase/ATPase; G protei 91.3 0.096 3.3E-06 40.9 2.4 47 24-74 208-260 (337)
160 1l8q_A Chromosomal replication 91.3 0.5 1.7E-05 35.7 6.4 44 42-85 96-140 (324)
161 2z43_A DNA repair and recombin 90.9 0.19 6.4E-06 38.7 3.6 56 32-87 188-259 (324)
162 2eyu_A Twitching motility prot 90.8 8.8E-05 3E-09 56.5 -15.2 58 26-85 172-239 (261)
163 3c8u_A Fructokinase; YP_612366 90.3 0.00067 2.3E-08 49.0 -10.2 29 26-54 111-140 (208)
164 1v5w_A DMC1, meiotic recombina 90.2 0.36 1.2E-05 37.5 4.7 55 33-87 204-275 (343)
165 2ewv_A Twitching motility prot 89.2 0.00012 4.2E-09 58.3 -16.2 59 27-87 284-352 (372)
166 2x8a_A Nuclear valosin-contain 89.1 0.00085 2.9E-08 51.1 -10.9 48 20-69 131-190 (274)
167 2qby_A CDC6 homolog 1, cell di 88.7 0.19 6.4E-06 38.1 2.0 46 44-89 128-176 (386)
168 1u94_A RECA protein, recombina 88.1 1.5 5.2E-05 34.5 7.0 54 33-86 128-200 (356)
169 1lvg_A Guanylate kinase, GMP k 88.0 0.013 4.5E-07 42.0 -4.6 34 40-73 120-153 (198)
170 2w58_A DNAI, primosome compone 88.0 0.23 8E-06 34.7 2.0 49 42-90 113-164 (202)
171 3k1j_A LON protease, ATP-depen 87.8 0.11 3.8E-06 43.4 0.3 49 22-71 179-227 (604)
172 3bos_A Putative DNA replicatio 87.4 0.41 1.4E-05 33.7 3.1 42 43-84 103-146 (242)
173 3szr_A Interferon-induced GTP- 86.9 0.37 1.3E-05 40.5 2.9 60 24-84 162-223 (608)
174 4ag6_A VIRB4 ATPase, type IV s 86.1 0.77 2.6E-05 35.8 4.2 48 43-90 261-311 (392)
175 1njg_A DNA polymerase III subu 85.6 0.83 2.8E-05 31.5 3.8 43 44-88 126-168 (250)
176 2r8r_A Sensor protein; KDPD, P 85.2 0.49 1.7E-05 35.5 2.6 47 38-84 78-125 (228)
177 3hr8_A Protein RECA; alpha and 84.9 4.4 0.00015 31.9 8.1 53 33-85 126-197 (356)
178 1p9r_A General secretion pathw 84.6 0.0082 2.8E-07 48.7 -8.0 36 11-50 280-315 (418)
179 1sxj_D Activator 1 41 kDa subu 82.9 1.5 5.2E-05 32.8 4.5 43 44-88 133-175 (353)
180 2qtf_A Protein HFLX, GTP-bindi 82.4 0.44 1.5E-05 37.6 1.4 48 22-73 300-352 (364)
181 2b8t_A Thymidine kinase; deoxy 82.0 2.7 9.1E-05 31.0 5.5 48 44-96 89-147 (223)
182 2q6t_A DNAB replication FORK h 81.2 2.7 9.3E-05 33.5 5.6 49 36-84 300-361 (444)
183 2qgz_A Helicase loader, putati 80.7 0.72 2.5E-05 35.3 2.0 49 42-90 212-263 (308)
184 1jcn_A Inosine monophosphate d 80.3 0.019 6.6E-07 47.3 -7.5 52 39-96 28-83 (514)
185 1xp8_A RECA protein, recombina 80.0 7.3 0.00025 30.6 7.7 54 33-86 139-211 (366)
186 3kl4_A SRP54, signal recogniti 78.1 2.1 7.3E-05 34.7 4.1 51 35-85 170-223 (433)
187 3h4m_A Proteasome-activating n 76.9 2.5 8.6E-05 30.9 3.9 56 34-89 100-169 (285)
188 2q6t_A DNAB replication FORK h 76.6 12 0.00041 29.7 8.1 55 25-84 263-318 (444)
189 3cf0_A Transitional endoplasmi 76.5 4.5 0.00015 30.3 5.3 56 34-89 98-167 (301)
190 4dgh_A Sulfate permease family 74.9 14 0.00049 23.9 7.6 47 42-88 46-93 (130)
191 2chg_A Replication factor C sm 74.7 5.4 0.00018 27.0 4.9 43 43-87 101-143 (226)
192 3d8b_A Fidgetin-like protein 1 74.5 8.3 0.00029 29.6 6.5 56 33-88 165-233 (357)
193 2orv_A Thymidine kinase; TP4A 74.4 5.7 0.00019 29.8 5.3 48 43-96 89-147 (234)
194 3t34_A Dynamin-related protein 74.1 2.1 7.2E-05 33.0 2.9 58 26-84 154-212 (360)
195 3co5_A Putative two-component 74.0 9 0.00031 25.2 5.8 40 44-84 75-114 (143)
196 2yv5_A YJEQ protein; hydrolase 73.3 0.14 4.8E-06 39.2 -3.9 34 6-39 266-300 (302)
197 1xx6_A Thymidine kinase; NESG, 73.0 6 0.00021 28.2 5.0 48 44-96 81-139 (191)
198 1jjv_A Dephospho-COA kinase; P 71.6 0.2 6.9E-06 35.3 -3.2 65 28-96 61-128 (206)
199 2i1q_A DNA repair and recombin 70.6 3.2 0.00011 31.3 3.2 51 34-84 191-257 (322)
200 1b9m_A Protein (mode); DNA-bin 69.7 1.1 3.6E-05 33.0 0.3 38 8-46 56-93 (265)
201 1ega_A Protein (GTP-binding pr 69.3 3.5 0.00012 31.2 3.1 63 27-96 101-170 (301)
202 4dgf_A Sulfate transporter sul 68.9 19 0.00066 23.5 6.6 46 43-88 50-96 (135)
203 2dy1_A Elongation factor G; tr 68.4 11 0.00037 31.9 6.2 44 41-89 96-139 (665)
204 3oiz_A Antisigma-factor antago 68.2 7.6 0.00026 24.4 4.2 42 43-84 42-84 (99)
205 3bt7_A TRNA (uracil-5-)-methyl 67.1 8.3 0.00028 29.9 5.0 40 44-91 295-334 (369)
206 2qz4_A Paraplegin; AAA+, SPG7, 67.0 19 0.00064 25.5 6.6 55 35-89 89-158 (262)
207 2j9r_A Thymidine kinase; TK1, 66.0 10 0.00035 27.9 5.0 48 44-96 101-159 (214)
208 2yhs_A FTSY, cell division pro 66.0 3.1 0.00011 34.6 2.4 48 31-84 397-447 (503)
209 1jr3_A DNA polymerase III subu 64.9 6.1 0.00021 29.7 3.7 43 43-87 118-160 (373)
210 3ny7_A YCHM protein, sulfate t 64.7 17 0.00058 23.3 5.5 46 43-89 44-90 (118)
211 2kln_A Probable sulphate-trans 64.5 6.7 0.00023 25.6 3.5 44 44-87 47-91 (130)
212 3llo_A Prestin; STAS domain, c 64.3 27 0.00092 22.8 7.5 46 43-88 62-108 (143)
213 3llm_A ATP-dependent RNA helic 63.2 15 0.0005 26.2 5.4 59 28-88 162-222 (235)
214 2orw_A Thymidine kinase; TMTK, 62.7 5.5 0.00019 27.9 2.9 38 44-86 76-113 (184)
215 3f6c_A Positive transcription 61.8 25 0.00087 21.6 6.3 40 42-85 44-83 (134)
216 3bgw_A DNAB-like replicative h 61.3 11 0.00039 30.2 4.9 53 27-84 263-318 (444)
217 1q57_A DNA primase/helicase; d 61.2 22 0.00075 28.5 6.6 53 33-86 341-404 (503)
218 4fcw_A Chaperone protein CLPB; 59.9 13 0.00045 27.1 4.7 36 36-72 110-146 (311)
219 1jr3_D DNA polymerase III, del 59.6 9.8 0.00033 28.7 4.0 47 38-85 70-116 (343)
220 1ypw_A Transitional endoplasmi 59.0 9.7 0.00033 33.0 4.3 58 33-90 286-354 (806)
221 1x52_A Pelota homolog, CGI-17; 58.9 13 0.00046 24.8 4.2 55 37-91 46-102 (124)
222 2ka5_A Putative anti-sigma fac 58.7 32 0.0011 22.1 6.1 48 40-87 47-95 (125)
223 3u61_B DNA polymerase accessor 58.0 15 0.0005 27.3 4.7 43 44-88 105-148 (324)
224 2v1u_A Cell division control p 57.3 7.7 0.00026 29.0 3.1 43 44-86 130-177 (387)
225 1d2n_A N-ethylmaleimide-sensit 57.0 18 0.00062 26.1 5.0 55 36-90 116-181 (272)
226 1iqp_A RFCS; clamp loader, ext 56.9 17 0.00059 26.5 4.9 43 43-87 109-151 (327)
227 3q6v_A Beta-lactamase; metallo 56.4 19 0.00064 25.1 4.9 42 45-89 35-77 (233)
228 3io5_A Recombination and repai 55.7 33 0.0011 27.0 6.6 59 29-87 92-173 (333)
229 3hu3_A Transitional endoplasmi 55.7 16 0.00055 29.7 4.9 54 35-88 288-352 (489)
230 1th8_B Anti-sigma F factor ant 55.0 31 0.0011 21.3 5.3 51 37-87 34-86 (116)
231 2vhj_A Ntpase P4, P4; non- hyd 54.6 27 0.00091 27.4 5.9 53 31-84 169-234 (331)
232 4b4t_L 26S protease subunit RP 53.8 52 0.0018 26.6 7.6 57 33-89 263-333 (437)
233 1sxj_B Activator 1 37 kDa subu 53.7 14 0.00048 26.9 4.0 42 44-87 107-148 (323)
234 1tmy_A CHEY protein, TMY; chem 53.3 34 0.0012 20.5 5.9 38 43-84 46-83 (120)
235 2wji_A Ferrous iron transport 52.2 27 0.00092 22.9 4.9 41 43-90 80-122 (165)
236 4b4t_J 26S protease regulatory 51.8 28 0.00097 27.9 5.7 55 34-88 231-299 (405)
237 1sbo_A Putative anti-sigma fac 51.5 38 0.0013 20.5 7.7 51 37-87 35-87 (110)
238 3bh0_A DNAB-like replicative h 51.2 29 0.001 26.1 5.5 51 35-85 168-230 (315)
239 3cu5_A Two component transcrip 50.6 44 0.0015 21.0 6.2 39 42-84 47-85 (141)
240 1zxx_A 6-phosphofructokinase; 50.1 42 0.0014 26.0 6.3 47 34-85 175-223 (319)
241 2vo9_A EAD500, L-alanyl-D-glut 50.0 22 0.00075 25.2 4.3 33 54-86 30-62 (179)
242 4b4t_I 26S protease regulatory 49.1 36 0.0012 27.7 6.0 56 34-89 265-334 (437)
243 3eod_A Protein HNR; response r 49.0 35 0.0012 20.9 4.9 41 42-85 49-89 (130)
244 4eyb_A Beta-lactamase NDM-1; m 48.9 31 0.0011 25.1 5.2 43 44-89 83-126 (270)
245 3n70_A Transport activator; si 48.9 23 0.0008 23.1 4.2 44 44-89 76-120 (145)
246 1jql_B DNA polymerase III, del 48.1 17 0.00058 24.1 3.4 45 40-85 72-116 (140)
247 4e7p_A Response regulator; DNA 48.1 50 0.0017 20.9 6.5 39 42-84 64-102 (150)
248 2jk1_A HUPR, hydrogenase trans 48.1 47 0.0016 20.6 5.9 41 42-85 42-82 (139)
249 3lxx_A GTPase IMAP family memb 48.0 46 0.0016 23.4 5.9 43 42-84 110-154 (239)
250 1iy2_A ATP-dependent metallopr 47.4 0.093 3.2E-06 39.1 -9.1 29 23-53 166-194 (278)
251 1pfk_A Phosphofructokinase; tr 47.4 48 0.0017 25.7 6.3 47 34-85 176-224 (320)
252 1mvo_A PHOP response regulator 47.1 47 0.0016 20.3 6.5 39 42-84 45-83 (136)
253 2ftc_D Mitochondrial ribosomal 47.0 54 0.0018 23.2 6.0 39 33-73 74-115 (175)
254 4b4t_K 26S protease regulatory 46.7 49 0.0017 26.6 6.4 55 34-88 255-323 (428)
255 1srr_A SPO0F, sporulation resp 46.3 47 0.0016 20.1 6.9 39 42-84 45-83 (124)
256 3lnc_A Guanylate kinase, GMP k 46.1 1.1 3.8E-05 32.1 -3.2 55 42-96 146-206 (231)
257 4b4t_M 26S protease regulatory 45.8 48 0.0016 26.7 6.2 57 33-89 263-333 (434)
258 4a1f_A DNAB helicase, replicat 45.7 28 0.00096 27.1 4.7 57 33-89 142-209 (338)
259 3f6p_A Transcriptional regulat 45.7 49 0.0017 20.1 5.6 39 42-85 44-83 (120)
260 2jjq_A Uncharacterized RNA met 45.4 59 0.002 25.8 6.7 42 44-91 353-394 (425)
261 3b2n_A Uncharacterized protein 45.2 52 0.0018 20.3 6.2 39 42-84 47-85 (133)
262 3i42_A Response regulator rece 45.1 50 0.0017 20.0 5.8 40 42-84 45-85 (127)
263 2dpm_A M.dpnii 1, protein (ade 45.0 62 0.0021 24.3 6.4 48 44-91 187-248 (284)
264 3eie_A Vacuolar protein sortin 44.9 55 0.0019 24.4 6.1 53 36-88 102-166 (322)
265 3a10_A Response regulator; pho 44.8 47 0.0016 19.7 6.7 39 42-84 43-81 (116)
266 1dbw_A Transcriptional regulat 44.4 51 0.0018 20.0 5.8 39 42-84 45-83 (126)
267 1xp2_A EAD500, PLY500, L-alany 44.2 31 0.001 24.9 4.3 31 55-85 31-61 (179)
268 2qp9_X Vacuolar protein sortin 44.2 48 0.0017 25.3 5.8 54 34-87 133-198 (355)
269 3nhm_A Response regulator; pro 44.0 53 0.0018 20.0 6.3 40 42-84 45-85 (133)
270 1a5t_A Delta prime, HOLB; zinc 43.8 15 0.00052 27.8 2.9 43 43-87 107-149 (334)
271 4b4t_H 26S protease regulatory 43.8 68 0.0023 26.3 6.9 56 33-88 291-360 (467)
272 1xwi_A SKD1 protein; VPS4B, AA 43.7 84 0.0029 23.5 7.1 54 34-87 95-160 (322)
273 3iog_A Beta-lactamase; hydrola 43.6 27 0.00092 24.1 4.0 41 45-88 32-73 (227)
274 3cmw_A Protein RECA, recombina 43.5 67 0.0023 30.6 7.5 53 33-85 448-519 (1706)
275 3eul_A Possible nitrate/nitrit 43.4 60 0.0021 20.5 6.8 39 42-84 59-97 (152)
276 3hzh_A Chemotaxis response reg 43.4 63 0.0021 20.7 6.7 38 44-84 83-120 (157)
277 1ojl_A Transcriptional regulat 43.3 43 0.0015 25.0 5.3 41 44-85 96-146 (304)
278 3mca_B Protein DOM34, elongati 43.2 52 0.0018 26.1 6.0 46 46-91 310-355 (390)
279 2qxy_A Response regulator; reg 43.0 58 0.002 20.2 6.1 38 42-84 46-83 (142)
280 3o63_A Probable thiamine-phosp 43.0 97 0.0033 22.7 7.1 59 37-96 49-117 (243)
281 3hdg_A Uncharacterized protein 42.7 57 0.002 20.0 5.7 40 42-85 49-88 (137)
282 2gno_A DNA polymerase III, gam 42.7 15 0.00052 27.8 2.7 44 44-89 82-125 (305)
283 1ixz_A ATP-dependent metallopr 42.3 0.088 3E-06 38.5 -9.8 30 23-54 142-171 (254)
284 3cmw_A Protein RECA, recombina 42.0 77 0.0026 30.2 7.6 52 33-84 797-867 (1706)
285 3lte_A Response regulator; str 41.1 59 0.002 19.7 5.7 40 42-84 48-88 (132)
286 3f2i_A ALR0221 protein; alpha- 40.2 46 0.0016 22.9 4.7 41 45-88 72-114 (172)
287 1gml_A T-complex protein 1 sub 40.2 51 0.0017 23.0 5.0 48 42-89 25-91 (178)
288 3crn_A Response regulator rece 40.0 64 0.0022 19.8 6.1 39 42-84 45-83 (132)
289 2hqs_H Peptidoglycan-associate 39.7 53 0.0018 21.1 4.7 43 42-84 2-45 (118)
290 3vfd_A Spastin; ATPase, microt 39.5 52 0.0018 25.2 5.4 54 36-89 199-265 (389)
291 4a8j_C Elongator complex prote 39.4 74 0.0025 24.4 6.1 42 43-86 148-196 (280)
292 3grc_A Sensor protein, kinase; 39.2 67 0.0023 19.8 6.3 43 42-87 48-91 (140)
293 3htu_A Vacuolar protein-sortin 39.1 46 0.0016 20.7 4.1 31 50-83 40-70 (79)
294 3t15_A Ribulose bisphosphate c 39.0 20 0.00067 26.7 2.8 13 42-54 97-109 (293)
295 3lua_A Response regulator rece 39.0 68 0.0023 19.8 6.4 38 43-84 49-89 (140)
296 1lv7_A FTSH; alpha/beta domain 38.8 76 0.0026 22.4 5.9 53 36-89 96-163 (257)
297 1zgz_A Torcad operon transcrip 38.8 62 0.0021 19.3 6.7 38 42-84 44-81 (122)
298 2g1p_A DNA adenine methylase; 38.7 79 0.0027 23.6 6.1 48 44-91 174-235 (278)
299 3syl_A Protein CBBX; photosynt 38.6 1.1E+02 0.0037 22.0 7.3 41 44-85 130-178 (309)
300 1k68_A Phytochrome response re 38.6 66 0.0022 19.5 5.2 40 43-85 54-95 (140)
301 2p65_A Hypothetical protein PF 38.5 5 0.00017 26.6 -0.6 45 43-87 114-163 (187)
302 1a6d_A Thermosome (alpha subun 38.5 31 0.0011 28.6 4.1 48 42-89 231-297 (545)
303 1e9r_A Conjugal transfer prote 38.5 17 0.00058 28.4 2.4 44 44-90 279-322 (437)
304 2a6p_A Possible phosphoglycera 38.5 36 0.0012 23.8 4.0 25 63-87 129-155 (208)
305 2rjn_A Response regulator rece 38.3 74 0.0025 20.1 6.9 40 42-85 49-88 (154)
306 2rdm_A Response regulator rece 37.9 67 0.0023 19.4 7.0 37 44-84 50-87 (132)
307 3v2d_F 50S ribosomal protein L 37.8 63 0.0022 23.6 5.3 52 33-86 106-161 (210)
308 3cz5_A Two-component response 37.4 76 0.0026 20.0 7.3 39 42-84 49-87 (153)
309 3hv2_A Response regulator/HD d 37.2 78 0.0027 20.0 6.9 39 42-84 56-94 (153)
310 3ilx_A First ORF in transposon 37.1 76 0.0026 21.2 5.3 52 30-84 20-71 (143)
311 3heb_A Response regulator rece 36.8 64 0.0022 20.3 4.8 40 42-84 57-97 (152)
312 3hdv_A Response regulator; PSI 36.7 73 0.0025 19.5 5.2 39 43-84 50-89 (136)
313 1ixk_A Methyltransferase; open 36.2 43 0.0015 25.2 4.3 42 45-86 188-249 (315)
314 4hbz_A Putative phosphohistidi 36.2 42 0.0015 23.5 4.0 26 63-88 99-124 (186)
315 1dz3_A Stage 0 sporulation pro 36.0 74 0.0025 19.3 6.6 41 42-85 46-87 (130)
316 3eqz_A Response regulator; str 35.9 56 0.0019 19.8 4.3 41 43-87 45-85 (135)
317 2zay_A Response regulator rece 35.8 79 0.0027 19.6 6.1 39 43-84 51-90 (147)
318 1w4r_A Thymidine kinase; type 35.8 28 0.00096 25.1 3.1 40 42-87 89-128 (195)
319 3nwy_A Uridylate kinase; allos 35.4 52 0.0018 24.9 4.6 30 54-83 66-95 (281)
320 1k66_A Phytochrome response re 35.3 78 0.0027 19.4 5.2 40 43-85 61-102 (149)
321 3jte_A Response regulator rece 35.1 80 0.0027 19.5 7.3 39 42-84 47-85 (143)
322 2zts_A Putative uncharacterize 35.1 25 0.00085 24.4 2.7 45 42-86 133-182 (251)
323 1dmg_A Ribosomal protein L4; a 35.1 78 0.0027 23.3 5.5 51 32-84 104-158 (225)
324 1we3_A CPN60(groel); chaperoni 35.1 24 0.00083 29.2 2.9 43 42-89 213-255 (543)
325 3n53_A Response regulator rece 34.9 59 0.002 20.1 4.3 40 42-84 44-84 (140)
326 1p2f_A Response regulator; DRR 34.9 82 0.0028 21.3 5.4 38 43-84 42-79 (220)
327 3gt7_A Sensor protein; structu 34.8 87 0.003 19.9 6.2 39 42-83 49-88 (154)
328 3r7a_A Phosphoglycerate mutase 34.7 37 0.0013 24.0 3.6 24 63-86 156-184 (237)
329 2b4a_A BH3024; flavodoxin-like 34.6 78 0.0027 19.4 4.9 37 43-83 59-95 (138)
330 1a6d_B Thermosome (beta subuni 34.5 46 0.0016 27.4 4.5 48 42-89 232-298 (543)
331 2qvg_A Two component response 34.5 81 0.0028 19.4 5.1 39 43-84 58-97 (143)
332 3gl9_A Response regulator; bet 34.4 78 0.0027 19.2 5.3 41 41-84 43-84 (122)
333 1ys7_A Transcriptional regulat 34.0 1.1E+02 0.0037 20.8 6.7 39 42-84 49-87 (233)
334 1h2e_A Phosphatase, YHFR; hydr 34.0 41 0.0014 23.4 3.7 25 63-87 127-153 (207)
335 1qkk_A DCTD, C4-dicarboxylate 33.9 89 0.003 19.7 6.2 38 43-84 46-83 (155)
336 3ilh_A Two component response 33.9 83 0.0028 19.3 6.9 39 43-84 59-100 (146)
337 3cfy_A Putative LUXO repressor 33.8 86 0.0029 19.4 5.8 39 42-84 46-84 (137)
338 1a04_A Nitrate/nitrite respons 33.4 1.1E+02 0.0037 20.6 6.5 39 42-84 49-88 (215)
339 3zxn_A RSBS, anti-sigma-factor 33.3 97 0.0033 19.9 6.5 54 37-90 34-89 (123)
340 1ujc_A Phosphohistidine phosph 33.3 45 0.0016 22.3 3.7 25 63-87 86-111 (161)
341 3cg4_A Response regulator rece 33.2 85 0.0029 19.3 5.5 41 42-85 49-90 (142)
342 2pl1_A Transcriptional regulat 33.2 78 0.0027 18.8 6.5 39 42-84 42-80 (121)
343 1kgs_A DRRD, DNA binding respo 33.1 1.1E+02 0.0038 20.6 7.6 39 42-84 44-82 (225)
344 2lpm_A Two-component response 32.9 33 0.0011 22.4 2.8 50 26-84 38-87 (123)
345 2bjv_A PSP operon transcriptio 32.9 63 0.0022 23.0 4.6 41 44-85 100-150 (265)
346 3bgw_A DNAB-like replicative h 32.7 44 0.0015 26.7 4.0 56 27-84 291-358 (444)
347 1qo0_D AMIR; binding protein, 32.6 53 0.0018 21.9 4.0 38 42-84 50-87 (196)
348 2chq_A Replication factor C sm 32.5 11 0.00039 27.4 0.4 43 43-87 101-143 (319)
349 3kht_A Response regulator; PSI 32.3 91 0.0031 19.3 5.0 40 42-84 49-89 (144)
350 1yio_A Response regulatory pro 32.2 91 0.0031 20.8 5.2 39 42-84 46-84 (208)
351 3t8y_A CHEB, chemotaxis respon 32.0 1E+02 0.0035 19.8 6.3 37 42-83 69-105 (164)
352 3cf2_A TER ATPase, transitiona 31.8 71 0.0024 27.9 5.4 56 34-89 287-353 (806)
353 2qr3_A Two-component system re 31.8 89 0.0031 19.0 6.5 39 42-84 45-89 (140)
354 1mb3_A Cell division response 31.7 84 0.0029 18.7 5.4 40 42-84 43-83 (124)
355 3sxu_B DNA polymerase III subu 31.6 38 0.0013 23.2 3.0 73 6-87 5-78 (138)
356 3ajd_A Putative methyltransfer 31.4 25 0.00084 25.8 2.2 43 44-86 156-214 (274)
357 2qzj_A Two-component response 30.8 64 0.0022 20.1 4.0 38 42-84 46-83 (136)
358 3c7t_A Ecdysteroid-phosphate p 30.8 55 0.0019 23.6 4.0 24 64-87 168-195 (263)
359 2qsj_A DNA-binding response re 30.6 69 0.0024 20.2 4.1 38 43-84 49-86 (154)
360 3cg0_A Response regulator rece 30.6 94 0.0032 18.9 6.8 37 43-84 53-90 (140)
361 1mqo_A Beta-lactamase II; alph 30.5 87 0.003 21.6 4.9 42 45-89 50-92 (227)
362 1qvr_A CLPB protein; coiled co 30.4 36 0.0012 29.3 3.3 32 39-71 654-686 (854)
363 3k7i_B IHH, HHG-2, indian hedg 30.4 18 0.00062 26.3 1.2 31 42-72 69-99 (187)
364 2r25_B Osmosensing histidine p 30.1 99 0.0034 19.0 6.6 40 43-85 51-91 (133)
365 1yf3_A DNA adenine methylase; 30.1 1.5E+02 0.005 21.8 6.3 44 43-86 163-214 (259)
366 3r0j_A Possible two component 30.1 1.4E+02 0.0048 20.8 7.2 40 42-85 65-105 (250)
367 3d4i_A STS-2 protein; PGM, 2H- 30.1 66 0.0022 23.2 4.3 24 64-87 178-205 (273)
368 1tue_A Replication protein E1; 30.0 57 0.002 23.9 3.9 12 43-54 102-113 (212)
369 1jbk_A CLPB protein; beta barr 30.0 21 0.00071 23.3 1.4 45 43-87 114-162 (195)
370 3mbk_A Ubiquitin-associated an 29.9 51 0.0017 23.8 3.7 25 64-88 169-197 (264)
371 1h1n_A Endo type cellulase ENG 29.6 1E+02 0.0034 22.7 5.4 35 52-86 61-95 (305)
372 3kto_A Response regulator rece 29.5 57 0.002 20.2 3.5 38 43-84 49-88 (136)
373 4dcu_A GTP-binding protein ENG 29.2 44 0.0015 26.4 3.5 55 31-89 89-144 (456)
374 3gp3_A 2,3-bisphosphoglycerate 29.1 54 0.0018 23.5 3.7 25 63-87 165-193 (257)
375 3cmu_A Protein RECA, recombina 28.9 1.3E+02 0.0044 29.3 6.9 54 30-84 1490-1562(2050)
376 1jbe_A Chemotaxis protein CHEY 28.8 98 0.0033 18.6 5.6 40 42-84 47-87 (128)
377 3pxi_A Negative regulator of g 28.6 1.1E+02 0.0036 25.9 5.9 41 43-84 578-628 (758)
378 3rqi_A Response regulator prot 28.6 76 0.0026 21.0 4.2 40 41-84 48-87 (184)
379 3ek6_A Uridylate kinase; UMPK 28.5 90 0.0031 22.7 4.9 30 54-83 26-55 (243)
380 3p9d_A T-complex protein 1 sub 28.4 58 0.002 27.0 4.1 45 44-88 241-304 (559)
381 3c3m_A Response regulator rece 28.4 1.1E+02 0.0037 18.9 6.5 40 42-84 45-85 (138)
382 1m3s_A Hypothetical protein YC 28.4 80 0.0027 21.2 4.3 34 63-96 93-128 (186)
383 3p9d_G T-complex protein 1 sub 28.3 90 0.0031 25.8 5.3 48 42-89 236-302 (550)
384 1sxj_C Activator 1 40 kDa subu 28.1 77 0.0026 23.6 4.5 43 43-87 109-151 (340)
385 4a7w_A Uridylate kinase; trans 28.0 93 0.0032 22.6 4.9 29 55-83 25-53 (240)
386 3lxw_A GTPase IMAP family memb 28.0 80 0.0027 22.6 4.5 57 31-88 89-151 (247)
387 1hqc_A RUVB; extended AAA-ATPa 27.9 93 0.0032 22.5 4.9 44 43-87 89-149 (324)
388 3t6k_A Response regulator rece 27.8 1.1E+02 0.0038 18.9 6.4 40 42-84 46-86 (136)
389 3cnb_A DNA-binding response re 27.8 1.1E+02 0.0037 18.7 6.2 40 42-84 52-92 (143)
390 1z9d_A Uridylate kinase, UK, U 27.8 1E+02 0.0034 22.4 5.0 33 51-83 21-53 (252)
391 1e58_A Phosphoglycerate mutase 27.7 68 0.0023 22.8 4.0 25 62-86 157-185 (249)
392 4emb_A 2,3-bisphosphoglycerate 27.7 58 0.002 23.7 3.7 24 63-86 183-210 (274)
393 2j5v_A Glutamate 5-kinase; pro 27.6 73 0.0025 24.9 4.4 33 53-85 19-51 (367)
394 2hig_A 6-phospho-1-fructokinas 27.6 1.4E+02 0.0048 24.6 6.2 48 34-86 278-327 (487)
395 2qv0_A Protein MRKE; structura 27.5 1.1E+02 0.0038 18.8 5.2 39 43-85 54-92 (143)
396 4a3s_A 6-phosphofructokinase; 27.5 1.8E+02 0.0061 22.3 6.6 46 34-84 175-222 (319)
397 2a9o_A Response regulator; ess 27.5 99 0.0034 18.2 6.6 38 42-84 43-80 (120)
398 3mxo_A Serine/threonine-protei 27.4 76 0.0026 21.8 4.1 26 61-86 113-145 (202)
399 2a1f_A Uridylate kinase; PYRH, 27.3 1E+02 0.0036 22.1 5.0 33 51-83 22-54 (247)
400 2r6a_A DNAB helicase, replicat 27.2 2.2E+02 0.0074 22.3 7.2 55 25-84 266-321 (454)
401 3tsm_A IGPS, indole-3-glycerol 27.1 2E+02 0.0068 21.6 7.9 50 37-91 135-184 (272)
402 1qhf_A Protein (phosphoglycera 27.0 71 0.0024 22.5 4.0 26 62-87 155-184 (240)
403 2gwr_A DNA-binding response re 27.0 1.5E+02 0.0053 20.3 6.1 36 43-83 48-83 (238)
404 3kcn_A Adenylate cyclase homol 27.0 1.2E+02 0.0041 19.0 7.1 38 43-84 46-84 (151)
405 3p9d_D T-complex protein 1 sub 26.8 84 0.0029 25.8 4.8 45 42-86 229-292 (528)
406 1fzt_A Phosphoglycerate mutase 26.8 66 0.0023 22.3 3.7 25 63-87 138-166 (211)
407 3qja_A IGPS, indole-3-glycerol 26.8 1.7E+02 0.0059 21.7 6.3 49 38-91 129-177 (272)
408 2j48_A Two-component sensor ki 26.6 98 0.0033 17.8 6.1 39 43-84 44-83 (119)
409 3to5_A CHEY homolog; alpha(5)b 26.4 1.4E+02 0.0047 19.5 6.1 54 27-86 43-98 (134)
410 3q58_A N-acetylmannosamine-6-p 26.3 1.5E+02 0.0051 21.4 5.7 48 39-90 96-143 (229)
411 3m6y_A 4-hydroxy-2-oxoglutarat 26.0 17 0.00059 27.8 0.5 57 10-71 176-233 (275)
412 4dad_A Putative pilus assembly 26.0 1.2E+02 0.0041 18.7 6.4 38 43-84 66-103 (146)
413 4hl2_A Beta-lactamase NDM-1; s 25.7 1.3E+02 0.0044 20.9 5.2 41 46-89 58-99 (243)
414 3pdw_A Uncharacterized hydrola 25.7 1.5E+02 0.0052 20.6 5.6 40 44-84 5-46 (266)
415 3l6n_A Metallo-beta-lactamase; 25.7 68 0.0023 21.9 3.6 37 45-84 40-76 (219)
416 3e9c_A ZGC:56074; histidine ph 25.5 67 0.0023 23.3 3.7 11 76-86 175-185 (265)
417 1svm_A Large T antigen; AAA+ f 25.4 0.66 2.3E-05 36.9 -7.9 35 21-55 277-312 (377)
418 3kkk_A Phosphoglycerate mutase 25.2 70 0.0024 22.8 3.7 25 62-86 166-194 (258)
419 2jjx_A Uridylate kinase, UMP k 25.1 1.2E+02 0.0042 22.0 5.1 34 51-84 26-59 (255)
420 1jeo_A MJ1247, hypothetical pr 25.1 59 0.002 21.8 3.1 33 64-96 97-130 (180)
421 1xhf_A DYE resistance, aerobic 25.0 1.1E+02 0.0039 18.1 7.2 38 42-84 45-82 (123)
422 1h4x_A SPOIIAA, anti-sigma F f 24.9 1.2E+02 0.0043 18.5 5.1 51 37-87 33-85 (117)
423 1uwv_A 23S rRNA (uracil-5-)-me 24.7 1.5E+02 0.0052 23.2 5.9 41 44-91 356-396 (433)
424 4b3f_X DNA-binding protein smu 24.6 2.4E+02 0.0081 23.2 7.3 62 30-95 191-253 (646)
425 2hhj_A Bisphosphoglycerate mut 24.6 72 0.0025 23.1 3.7 25 62-86 162-190 (267)
426 1ne7_A Glucosamine-6-phosphate 24.5 49 0.0017 24.7 2.8 37 26-62 201-252 (289)
427 3cmu_A Protein RECA, recombina 24.3 79 0.0027 30.7 4.6 50 35-85 1148-1217(2050)
428 3igs_A N-acetylmannosamine-6-p 24.2 1.7E+02 0.0058 21.1 5.7 48 39-90 96-143 (232)
429 1i3c_A Response regulator RCP1 24.2 1.4E+02 0.0047 18.7 5.3 40 43-85 60-101 (149)
430 1p6q_A CHEY2; chemotaxis, sign 24.0 1.2E+02 0.0042 18.1 6.1 40 42-84 49-89 (129)
431 2zan_A Vacuolar protein sortin 23.9 82 0.0028 24.8 4.1 52 37-88 220-283 (444)
432 3aq1_B Thermosome subunit; gro 23.7 39 0.0013 27.6 2.2 48 42-89 185-251 (500)
433 1iok_A Chaperonin 60; chaperon 23.7 15 0.00053 30.5 -0.2 43 42-89 215-257 (545)
434 2xhz_A KDSD, YRBH, arabinose 5 23.6 94 0.0032 20.7 4.0 33 64-96 111-145 (183)
435 3mm4_A Histidine kinase homolo 23.5 1.8E+02 0.006 19.7 6.8 38 44-84 119-159 (206)
436 4fak_A Ribosomal RNA large sub 23.5 1.8E+02 0.0061 20.3 5.4 72 22-96 46-129 (163)
437 1wxx_A TT1595, hypothetical pr 23.3 61 0.0021 24.9 3.2 42 43-84 278-326 (382)
438 2jba_A Phosphate regulon trans 23.3 1.2E+02 0.0041 18.0 4.1 41 43-86 45-87 (127)
439 3hrx_A Probable enoyl-COA hydr 23.1 1.4E+02 0.0048 21.5 5.0 37 47-83 12-52 (254)
440 3iyg_B T-complex protein 1 sub 23.1 1.2E+02 0.004 24.8 5.0 48 42-89 219-286 (513)
441 3iyg_A T-complex protein 1 sub 23.1 68 0.0023 26.3 3.6 48 42-89 223-289 (529)
442 3hjg_A Putative alpha-ribazole 23.1 72 0.0025 22.3 3.3 25 62-86 126-151 (213)
443 1q3q_A Thermosome alpha subuni 22.9 45 0.0015 27.6 2.4 48 42-89 234-300 (548)
444 2qni_A AGR_C_517P, uncharacter 22.8 96 0.0033 21.9 4.0 26 62-87 138-166 (219)
445 1fs5_A Glucosamine-6-phosphate 22.8 61 0.0021 23.6 3.0 36 25-60 200-250 (266)
446 1a7t_A Metallo-beta-lactamase; 22.7 1.1E+02 0.0038 21.2 4.3 40 46-88 47-87 (232)
447 3n1g_B Desert hedgehog protein 22.6 79 0.0027 22.5 3.4 40 44-83 63-108 (170)
448 3d8h_A Glycolytic phosphoglyce 22.5 95 0.0032 22.5 4.0 25 62-86 175-203 (267)
449 1tk9_A Phosphoheptose isomeras 22.5 90 0.0031 20.9 3.7 51 41-96 107-159 (188)
450 1kp8_A Groel protein; chaperon 22.5 25 0.00086 29.3 0.8 42 42-88 214-255 (547)
451 1zh2_A KDP operon transcriptio 22.4 1.3E+02 0.0043 17.7 4.6 38 42-84 43-80 (121)
452 3t6o_A Sulfate transporter/ant 22.2 1.5E+02 0.0051 18.5 6.4 45 43-87 46-92 (121)
453 2fhx_A SPM-1; metallo-beta-lac 22.1 1.4E+02 0.0049 20.6 4.8 40 46-88 41-81 (246)
454 2a7k_A CARB; crotonase, antibi 22.1 1.8E+02 0.0063 20.8 5.5 37 47-83 12-52 (250)
455 1s8n_A Putative antiterminator 21.9 1.8E+02 0.0062 19.3 6.8 41 42-86 56-96 (205)
456 2aiz_P Outer membrane protein 21.9 1.7E+02 0.006 19.1 5.8 44 41-84 25-69 (134)
457 1ybd_A Uridylate kinase; alpha 21.6 1.5E+02 0.005 21.0 4.9 30 54-83 24-53 (239)
458 1rii_A 2,3-bisphosphoglycerate 21.2 1E+02 0.0036 22.4 4.0 26 62-87 157-186 (265)
459 3rrv_A Enoyl-COA hydratase/iso 21.1 1.5E+02 0.0051 21.9 4.9 37 47-83 40-80 (276)
460 3rsi_A Putative enoyl-COA hydr 21.0 1.7E+02 0.0058 21.3 5.2 37 47-83 21-61 (265)
461 2vgn_A DOM34; translation term 21.0 1.7E+02 0.0057 23.0 5.4 46 46-91 316-361 (386)
462 1sxj_A Activator 1 95 kDa subu 21.0 1.1E+02 0.0037 24.6 4.3 42 43-87 147-190 (516)
463 2f6q_A Peroxisomal 3,2-trans-e 21.0 1.6E+02 0.0054 21.7 5.0 36 48-84 39-77 (280)
464 1sfl_A 3-dehydroquinate dehydr 21.0 1.9E+02 0.0063 21.0 5.3 58 25-86 76-135 (238)
465 3snk_A Response regulator CHEY 20.9 55 0.0019 20.2 2.1 40 43-85 58-97 (135)
466 2pbp_A Enoyl-COA hydratase sub 20.9 2E+02 0.0068 20.8 5.5 37 47-83 17-57 (258)
467 3m0z_A Putative aldolase; MCSG 20.9 1.3E+02 0.0043 22.8 4.3 58 10-71 153-210 (249)
468 4eo9_A 2,3-bisphosphoglycerate 20.7 30 0.001 25.3 0.9 12 75-86 197-208 (268)
469 3r9t_A ECHA1_1; ssgcid, seattl 20.6 1.8E+02 0.0061 21.3 5.2 37 47-83 21-61 (267)
470 3m4x_A NOL1/NOP2/SUN family pr 20.6 68 0.0023 25.9 3.0 16 43-58 174-189 (456)
471 3l3s_A Enoyl-COA hydratase/iso 20.5 2.3E+02 0.0078 20.6 5.8 37 47-83 19-58 (263)
472 3iyg_H T-complex protein 1 sub 20.3 1.2E+02 0.0041 24.8 4.5 49 41-89 222-289 (515)
473 3sho_A Transcriptional regulat 20.1 1.2E+02 0.0042 20.2 4.0 33 64-96 102-136 (187)
474 2fbm_A Y chromosome chromodoma 20.1 1.9E+02 0.0065 21.5 5.3 37 47-83 35-75 (291)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.96 E-value=1.4e-29 Score=204.68 Aligned_cols=107 Identities=26% Similarity=0.340 Sum_probs=95.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
..++++.+++.++.+++|.+|||||||||+|||||+.+|++|||||||+|||+..+..++++|++++++ |.|||+||||
T Consensus 144 v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp HHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++. +..|+......+.+++
T Consensus 224 l~~~~~~aDrv~v-l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 224 MDVVKRICDCVAV-ISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHHHHCSEEEE-EETTEEEECCBHHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHH
Confidence 999988 999873 4566666666655554
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=5.8e-30 Score=199.41 Aligned_cols=107 Identities=34% Similarity=0.410 Sum_probs=95.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH~ 85 (123)
.+++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++ ++|+|||+||||
T Consensus 124 ~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 203 (275)
T 3gfo_A 124 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203 (275)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecC
Confidence 4578899999999999999999999999999999999999999999999999999999999999997 559999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++. +..|+.....++.+++
T Consensus 204 l~~~~~~~drv~~-l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 204 IDIVPLYCDNVFV-MKEGRVILQGNPKEVF 232 (275)
T ss_dssp CSSGGGGCSEEEE-EETTEEEEEECHHHHT
T ss_pred HHHHHHhCCEEEE-EECCEEEEECCHHHHh
Confidence 999988 999873 4566666666665554
No 3
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.96 E-value=2.5e-29 Score=193.95 Aligned_cols=106 Identities=29% Similarity=0.419 Sum_probs=92.6
Q ss_pred HHHHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++++++.++ .++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.++|++++++|.|||++|||
T Consensus 133 ~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 133 ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp HHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred HHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3568899999998 999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +..|+.....++.++
T Consensus 213 ~~~~~~~~d~v~~-l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 213 MGFARHVSSHVIF-LHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHH
Confidence 999987 999873 344555444444433
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.96 E-value=4e-29 Score=193.46 Aligned_cols=106 Identities=27% Similarity=0.397 Sum_probs=93.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|++++++|+|||++|||+
T Consensus 140 ~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 219 (263)
T 2olj_A 140 AMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM 219 (263)
T ss_dssp HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 35688999999999999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchhh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+++.. ||+++. +..|+.....++.++
T Consensus 220 ~~~~~~~d~v~~-l~~G~i~~~g~~~~~ 246 (263)
T 2olj_A 220 GFAREVGDRVLF-MDGGYIIEEGKPEDL 246 (263)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 99987 999873 345555544444444
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.96 E-value=2.9e-29 Score=192.77 Aligned_cols=105 Identities=23% Similarity=0.361 Sum_probs=92.7
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+++.|++++++|+|||++|||+
T Consensus 134 ~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 213 (257)
T 1g6h_A 134 AFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213 (257)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +..|+......+.+
T Consensus 214 ~~~~~~~d~v~~-l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 214 DIVLNYIDHLYV-MFNGQIIAEGRGEE 239 (257)
T ss_dssp STTGGGCSEEEE-EETTEEEEEEESHH
T ss_pred HHHHHhCCEEEE-EECCEEEEEeCHHH
Confidence 99987 999883 34555554444444
No 6
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.96 E-value=3.6e-29 Score=191.26 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=91.6
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+.+++.+++.+++++++ |+|||++|||
T Consensus 107 ~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 107 VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp HHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 457889999999999999999999999999999999999999999999999999999999999998754 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 187 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 187 LIEAAMLADEVAV-MLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 999987 999873 334554444444443
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.96 E-value=7.8e-29 Score=188.41 Aligned_cols=99 Identities=27% Similarity=0.382 Sum_probs=85.5
Q ss_pred HHHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 8 AEILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 8 ~e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.++++.+++.+. .+++|.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.+++++++ |+|||+||||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 126 LECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp HHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 467788888775 59999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHhhcceeeeccccccccc
Q psy6940 86 IEEARQANTVFGGFFAPKLHLS 107 (123)
Q Consensus 86 ~~~~~~~d~v~~~~~~~~~~~~ 107 (123)
++.+..||+++. +-.|+....
T Consensus 206 ~~~~~~~d~i~~-l~~G~i~~~ 226 (235)
T 3tif_A 206 INVARFGERIIY-LKDGEVERE 226 (235)
T ss_dssp HHHHTTSSEEEE-EETTEEEEE
T ss_pred HHHHHhCCEEEE-EECCEEEEE
Confidence 996534999973 334554433
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=5.5e-29 Score=192.70 Aligned_cols=107 Identities=27% Similarity=0.303 Sum_probs=94.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEE
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLH------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTI 79 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tv 79 (123)
.+++++.+++.++.++++.+|||||||||+|||||+. +|++|||||||+|||+..+..+++.|++++++ |+||
T Consensus 122 ~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tv 201 (266)
T 4g1u_C 122 LQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAV 201 (266)
T ss_dssp HHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEE
T ss_pred HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 4578899999999999999999999999999999999 99999999999999999999999999999765 6899
Q ss_pred EEEeCCHHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 80 IITTHYIEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 80 iivtH~~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|++|||++++.. ||+++. +..|+......+.++.
T Consensus 202 i~vtHdl~~~~~~~d~v~v-l~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 202 CCVLHDLNLAALYADRIML-LAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHC
T ss_pred EEEEcCHHHHHHhCCEEEE-EECCEEEEEcCHHHHh
Confidence 999999999987 999883 4466666655555543
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=7.6e-29 Score=199.90 Aligned_cols=107 Identities=27% Similarity=0.316 Sum_probs=94.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.+.++. +.|.|||+||||
T Consensus 119 v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp HHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 4678999999999999999999999999999999999999999999999999999999998887765 459999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++. +..|+.....++.++.
T Consensus 199 ~~ea~~~aDri~v-l~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 199 REEALQYADRIAV-MKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHHH
T ss_pred HHHHHHHCCEEEE-EECCEEEEEeCHHHHH
Confidence 999988 999874 4567776666666554
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.3e-28 Score=189.84 Aligned_cols=105 Identities=27% Similarity=0.247 Sum_probs=91.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.|++++++|+|||++||++
T Consensus 127 ~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp HHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred HHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +-.|+.....++.+
T Consensus 207 ~~~~~~~d~v~~-l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 207 LEVEFLCDRIAL-IHNGTIVETGTVEE 232 (256)
T ss_dssp HHHTTTCSEEEE-EETTEEEEEEEHHH
T ss_pred HHHHHHCCEEEE-EECCEEEEecCHHH
Confidence 99988 999873 33455444333333
No 11
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=1.1e-28 Score=200.38 Aligned_cols=107 Identities=31% Similarity=0.334 Sum_probs=96.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|++|||||||++||+..+..+++.|++++++ |.|+|+||||
T Consensus 114 v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 193 (381)
T 3rlf_A 114 VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193 (381)
T ss_dssp HHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 467899999999999999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++. +-.|+.....++.++.
T Consensus 194 ~~ea~~~aDri~v-l~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 194 QVEAMTLADKIVV-LDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEEeCHHHHH
Confidence 999988 999874 5567766666666553
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.96 E-value=1.7e-28 Score=185.24 Aligned_cols=97 Identities=25% Similarity=0.279 Sum_probs=86.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.+++++++|.|||++|||+
T Consensus 121 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~ 200 (224)
T 2pcj_A 121 GEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200 (224)
T ss_dssp HHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35688999999999999999999999999999999999999999999999999999999999999987799999999999
Q ss_pred HHHHhhcceeeecccccc
Q psy6940 87 EEARQANTVFGGFFAPKL 104 (123)
Q Consensus 87 ~~~~~~d~v~~~~~~~~~ 104 (123)
+++..||+++. +..|+.
T Consensus 201 ~~~~~~d~v~~-l~~G~i 217 (224)
T 2pcj_A 201 ELAELTHRTLE-MKDGKV 217 (224)
T ss_dssp HHHTTSSEEEE-EETTEE
T ss_pred HHHHhCCEEEE-EECCEE
Confidence 98833999873 334443
No 13
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.4e-28 Score=187.36 Aligned_cols=104 Identities=24% Similarity=0.348 Sum_probs=89.6
Q ss_pred HHHHHHc-CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 8 AEILTRT-RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 8 ~e~l~~~-~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+++++++ ++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+++.|++++++|+|||++|||+
T Consensus 120 ~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~ 199 (240)
T 1ji0_A 120 EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp HHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred HHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 4567778 488888999999999999999999999999999999999999999999999999999977799999999999
Q ss_pred HHHHh-hcceeeecccccccccCCchh
Q psy6940 87 EEARQ-ANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 87 ~~~~~-~d~v~~~~~~~~~~~~~~~~~ 112 (123)
+++.. ||+++. +-.|+.....++.+
T Consensus 200 ~~~~~~~d~v~~-l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 200 LGALKVAHYGYV-LETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEEEHHH
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHH
Confidence 99887 999873 33455544444333
No 14
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=2.3e-28 Score=187.89 Aligned_cols=96 Identities=27% Similarity=0.255 Sum_probs=87.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+.+.|++++++ |+|||++|||
T Consensus 109 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 109 AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356788999999999999999999999999999999999999999999999999999999999999877 9999999999
Q ss_pred HHHHHh-hcceeeeccccc
Q psy6940 86 IEEARQ-ANTVFGGFFAPK 103 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~ 103 (123)
++++.. ||+++. +-.|+
T Consensus 189 ~~~~~~~~d~v~~-l~~G~ 206 (253)
T 2nq2_C 189 PNQVVAIANKTLL-LNKQN 206 (253)
T ss_dssp HHHHHHHCSEEEE-EETTE
T ss_pred HHHHHHhCCEEEE-EeCCe
Confidence 999987 999873 33444
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.95 E-value=2.4e-28 Score=196.67 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=94.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|||++|||
T Consensus 126 v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 457889999999999999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 206 ~~~a~~~adri~v-l~~G~i~~~g~~~~l 233 (355)
T 1z47_A 206 QEEALEVADRVLV-LHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999988 999873 445666655555554
No 16
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.95 E-value=1.6e-28 Score=189.66 Aligned_cols=104 Identities=26% Similarity=0.373 Sum_probs=91.2
Q ss_pred HHHHHHHcCcc--hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 7 PAEILTRTRDF--ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~--~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.+++++.+++. ++.++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.|++++++|.|||++||
T Consensus 117 ~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtH 196 (266)
T 2yz2_A 117 VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196 (266)
T ss_dssp HHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 46789999998 9999999999999999999999999999999999999999999999999999999767999999999
Q ss_pred CHHHHHh-hcceeeecccccccccCCch
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~~~~ 111 (123)
|++++.. ||+++. +-.|+.....++.
T Consensus 197 d~~~~~~~~d~v~~-l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 197 DIETVINHVDRVVV-LEKGKKVFDGTRM 223 (266)
T ss_dssp CCTTTGGGCSEEEE-EETTEEEEEEEHH
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCHH
Confidence 9999987 999873 3344444333333
No 17
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=3.3e-28 Score=195.99 Aligned_cols=106 Identities=30% Similarity=0.329 Sum_probs=94.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 114 v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 114 VVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 467899999999999999999999999999999999999999999999999999999999999998765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 194 ~~~~~~~adri~v-l~~G~i~~~g~~~~l 221 (359)
T 2yyz_A 194 QAEAMTMASRIAV-FNQGKLVQYGTPDEV 221 (359)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHH
Confidence 999987 999873 445666555555554
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=2.3e-28 Score=196.25 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=94.1
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 121 v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 457889999999999999999999999999999999999999999999999999999999999998765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 201 ~~~~~~~adri~v-l~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 201 PADIFAIADRVGV-LVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999988 999873 445666655555554
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.95 E-value=3.3e-28 Score=195.27 Aligned_cols=106 Identities=27% Similarity=0.293 Sum_probs=93.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 108 v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp HHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899999999999999999999999999999999999999999999999999999999999998754 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 188 ~~~~~~~adri~v-l~~G~i~~~g~~~~~ 215 (348)
T 3d31_A 188 QTEARIMADRIAV-VMDGKLIQVGKPEEI 215 (348)
T ss_dssp HHHHHHHCSEEEE-ESSSCEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 999988 999873 445665555555544
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=4.5e-28 Score=195.86 Aligned_cols=107 Identities=26% Similarity=0.273 Sum_probs=94.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 120 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 120 VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp HHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 457889999999999999999999999999999999999999999999999999999999999998765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. ||+++. +-.|+.....++.++.
T Consensus 200 ~~~a~~~adri~v-l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 200 QVEAMTMGDRIAV-MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHHH
T ss_pred HHHHHHhCCEEEE-EeCCEEEEeCCHHHHH
Confidence 999988 999873 4456666555555543
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=3e-28 Score=196.40 Aligned_cols=106 Identities=29% Similarity=0.305 Sum_probs=93.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 114 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp HHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 457899999999999999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 194 ~~~a~~~adri~v-l~~G~i~~~g~~~~~ 221 (362)
T 2it1_A 194 QAEALAMADRIAV-IREGEILQVGTPDEV 221 (362)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHH
Confidence 999987 999873 445666555555554
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=5.4e-28 Score=195.55 Aligned_cols=106 Identities=24% Similarity=0.232 Sum_probs=94.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+++++.+++.++.+++|.+|||||||||+|||||+.+|+++||||||++||+..+..+.+.|+++.++ |.|+|++|||
T Consensus 122 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 122 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 457889999999999999999999999999999999999999999999999999999999999999765 9999999999
Q ss_pred HHHHHh-hcceeeecccccccccCCchhh
Q psy6940 86 IEEARQ-ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++.. ||+++. +-.|+.....++.++
T Consensus 202 ~~~a~~~adri~v-l~~G~i~~~g~~~~l 229 (372)
T 1v43_A 202 QVEAMTMGDRIAV-MNRGQLLQIGSPTEV 229 (372)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHH
Confidence 999987 999873 445666555555554
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.95 E-value=2.7e-28 Score=190.12 Aligned_cols=101 Identities=27% Similarity=0.322 Sum_probs=89.0
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEE--EEEeC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI--IITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv--iivtH 84 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.++++|++++++|+|| |++||
T Consensus 142 ~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtH 221 (279)
T 2ihy_A 142 AHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221 (279)
T ss_dssp HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEec
Confidence 3567889999999999999999999999999999999999999999999999999999999999987669999 99999
Q ss_pred CHHHHHh-hcceeeecccccccccC
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLHLSL 108 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~~~~ 108 (123)
|++++.. ||+++. +-.|+.....
T Consensus 222 d~~~~~~~~d~v~~-l~~G~i~~~g 245 (279)
T 2ihy_A 222 FIEEITANFSKILL-LKDGQSIQQG 245 (279)
T ss_dssp CGGGCCTTCCEEEE-EETTEEEEEE
T ss_pred CHHHHHHhCCEEEE-EECCEEEEEC
Confidence 9999887 999873 3344444333
No 24
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=7.8e-28 Score=184.82 Aligned_cols=99 Identities=23% Similarity=0.288 Sum_probs=88.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEE
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPS-------LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI 79 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~-------lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tv 79 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|+ ++||||||+|||+..+..+.+.|++++++|+||
T Consensus 107 ~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tv 186 (249)
T 2qi9_C 107 LNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAI 186 (249)
T ss_dssp HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 4578899999999999999999999999999999999999 999999999999999999999999997779999
Q ss_pred EEEeCCHHHHHh-hcceeeecccccccc
Q psy6940 80 IITTHYIEEARQ-ANTVFGGFFAPKLHL 106 (123)
Q Consensus 80 iivtH~~~~~~~-~d~v~~~~~~~~~~~ 106 (123)
|++|||++++.. ||+++. +-.|+...
T Consensus 187 iivtHd~~~~~~~~d~v~~-l~~G~i~~ 213 (249)
T 2qi9_C 187 VMSSHDLNHTLRHAHRAWL-LKGGKMLA 213 (249)
T ss_dssp EEECSCHHHHHHHCSEEEE-EETTEEEE
T ss_pred EEEeCCHHHHHHhCCEEEE-EECCEEEE
Confidence 999999999977 999873 23444443
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.95 E-value=2.3e-27 Score=183.45 Aligned_cols=106 Identities=25% Similarity=0.218 Sum_probs=90.1
Q ss_pred HHHHHHHcCcc-hhcCCCCC-CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 7 PAEILTRTRDF-ALRKLLPN-WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~-~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.+++++++++. .+.++++. +|||||||||+|||||+.+|+++||||||+|||+..++.+++.|++++++|+|||++||
T Consensus 143 ~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 143 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp HHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 35678888986 57888887 59999999999999999999999999999999999999999999998767999999999
Q ss_pred CHHHHHh--hcceeeecccccccccCCchhh
Q psy6940 85 YIEEARQ--ANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 85 ~~~~~~~--~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
|++++.. ||+++. +-.|+.....++.++
T Consensus 223 d~~~~~~~~~d~v~~-l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 223 YQRILDYIKPDYVHV-LYQGRIVKSGDFTLV 252 (267)
T ss_dssp SGGGGGTSCCSEEEE-EETTEEEEEECTTHH
T ss_pred CHHHHHhhcCCEEEE-EECCEEEEEcCHHHH
Confidence 9999875 788873 345666555555544
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.94 E-value=1.4e-27 Score=182.76 Aligned_cols=104 Identities=20% Similarity=0.178 Sum_probs=85.3
Q ss_pred HHHHHHHcCc-chhcCCCCCC-CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 7 PAEILTRTRD-FALRKLLPNW-TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l-~~~~~~~~~~-LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..++++++++ .++.++++++ |||||||||+|||||+.+|+++||||||+|||+..+..+++.|++++++|+|||++||
T Consensus 122 ~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp HHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred HHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3567888898 5888999999 9999999999999999999999999999999999999999999998767999999999
Q ss_pred CHHHHHh-h-cceeeecccccccccCCch
Q psy6940 85 YIEEARQ-A-NTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 85 ~~~~~~~-~-d~v~~~~~~~~~~~~~~~~ 111 (123)
|++++.. | |+++. +-.|+.....++.
T Consensus 202 d~~~~~~~~~d~v~~-l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 202 YQRILNYIQPDKVHV-MMDGRVVATGGPE 229 (250)
T ss_dssp SSGGGGTSCCSEEEE-EETTEEEEEESHH
T ss_pred CHHHHHHhcCCEEEE-EECCEEEEEeCHH
Confidence 9999886 4 88873 3455555444433
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=5.3e-27 Score=181.86 Aligned_cols=104 Identities=22% Similarity=0.204 Sum_probs=87.2
Q ss_pred HHHHHc--CcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 9 EILTRT--RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 9 e~l~~~--~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
++++.+ ++....++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++.+ +|+|||++||+
T Consensus 137 ~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 345555 566667889999999999999999999999999999999999999999999999999864 48999999999
Q ss_pred HHHHHhhcceeeecccccccccCCchhh
Q psy6940 86 IEEARQANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 86 ~~~~~~~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
++++..||+++. +-.|+.....++.++
T Consensus 217 ~~~~~~~d~v~~-l~~G~i~~~g~~~~l 243 (271)
T 2ixe_A 217 LSLAERAHHILF-LKEGSVCEQGTHLQL 243 (271)
T ss_dssp HHHHTTCSEEEE-EETTEEEEEECHHHH
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 998866999873 345555555555544
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.94 E-value=9.9e-28 Score=180.79 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=83.5
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..++++.+++... ++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.|++++++|+|||++||++
T Consensus 115 ~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 193 (214)
T 1sgw_A 115 IMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193 (214)
T ss_dssp HHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC
T ss_pred HHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 4578899999888 999999999999999999999999999999999999999999999999999876689999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 194 ~~~~~~~d~v~ 204 (214)
T 1sgw_A 194 LSYCDVNENLH 204 (214)
T ss_dssp CTTSSEEEEGG
T ss_pred HHHHHhCCEEE
Confidence 99988 88887
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.94 E-value=1.1e-26 Score=177.83 Aligned_cols=104 Identities=24% Similarity=0.345 Sum_probs=84.6
Q ss_pred HHHHHHcCcchhcC-----------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy6940 8 AEILTRTRDFALRK-----------LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 8 ~e~l~~~~l~~~~~-----------~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g 76 (123)
.++++.+++.++.+ +++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.|+++. +|
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g 194 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KG 194 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CC
Confidence 35566666655443 4568999999999999999999999999999999999999999999999985 69
Q ss_pred cEEEEEeCCHHHHHhhcceeeecccccccccCCchhh
Q psy6940 77 QTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESEL 113 (123)
Q Consensus 77 ~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~ 113 (123)
+|||++||+++.+..||+++. +-.|+......+.++
T Consensus 195 ~tviivtH~~~~~~~~d~v~~-l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 195 RTVIIIAHRLSTVKNADRIIV-MEKGKIVEQGKHKEL 230 (247)
T ss_dssp SEEEEECSSGGGGTTSSEEEE-EETTEEEEEECHHHH
T ss_pred CEEEEEeCCHHHHHhCCEEEE-EECCEEEEECCHHHH
Confidence 999999999998866999873 345555544444443
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=1.3e-26 Score=179.38 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=89.6
Q ss_pred HHHHHHHcCcc-hhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRDF-ALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~-~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++++++. ++.++++.+|||||||||+|||||+.+|+++||||||+|||+..++.+.+.|+++++ |||++|||
T Consensus 108 ~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd 184 (263)
T 2pjz_A 108 FLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHE 184 (263)
T ss_dssp HHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESC
T ss_pred HHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcC
Confidence 45788999998 899999999999999999999999999999999999999999999999999998753 99999999
Q ss_pred HHHHHh-hc-ceeeecccccccccCCchhhh
Q psy6940 86 IEEARQ-AN-TVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d-~v~~~~~~~~~~~~~~~~~~~ 114 (123)
++++.. || +++. +-.|+.....++.++.
T Consensus 185 ~~~~~~~~d~~i~~-l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 185 LDMLNLYKEYKAYF-LVGNRLQGPISVSELL 214 (263)
T ss_dssp GGGGGGCTTSEEEE-EETTEEEEEEEHHHHH
T ss_pred HHHHHHhcCceEEE-EECCEEEEecCHHHHH
Confidence 999887 99 8773 3455555554444443
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.93 E-value=1.8e-26 Score=175.84 Aligned_cols=105 Identities=23% Similarity=0.324 Sum_probs=87.4
Q ss_pred HHHHHHcCcchhcC-----------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy6940 8 AEILTRTRDFALRK-----------LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 8 ~e~l~~~~l~~~~~-----------~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g 76 (123)
.++++.+++.++.+ +++.+|||||||||+|||||+.+|+++||||||+|||+..++.+++.|++++ +|
T Consensus 110 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~ 188 (243)
T 1mv5_A 110 WQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KG 188 (243)
T ss_dssp HHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TT
T ss_pred HHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CC
Confidence 45667777765544 4567999999999999999999999999999999999999999999999987 69
Q ss_pred cEEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 77 QTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 77 ~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+|||++||+++.+..||+++. +-.|+.....++.++.
T Consensus 189 ~tvi~vtH~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 189 RTTLVIAHRLSTIVDADKIYF-IEKGQITGSGKHNELV 225 (243)
T ss_dssp SEEEEECCSHHHHHHCSEEEE-EETTEECCCSCHHHHH
T ss_pred CEEEEEeCChHHHHhCCEEEE-EECCEEEEeCCHHHHH
Confidence 999999999998866999874 3456666555655553
No 32
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=6.8e-26 Score=189.96 Aligned_cols=91 Identities=23% Similarity=0.320 Sum_probs=87.1
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+.+++++.+++....++++.+|||||||||+||+||+.+|++|||||||++||+..+..++++|++++++|.|||+||||
T Consensus 138 ~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd 217 (538)
T 1yqt_A 138 KLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217 (538)
T ss_dssp CHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999998789999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 218 ~~~~~~~~dri~ 229 (538)
T 1yqt_A 218 LAVLDYLSDIIH 229 (538)
T ss_dssp HHHHHHHCSEEE
T ss_pred HHHHHHhCCEEE
Confidence 999988 99998
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.93 E-value=8e-26 Score=174.17 Aligned_cols=92 Identities=28% Similarity=0.372 Sum_probs=78.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.|+++.+ |+|||++||+++.+..||+++. +-
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~-l~ 227 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIIL-LN 227 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEE-EE
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEE-EE
Confidence 467889999999999999999999999999999999999999999999999864 8999999999998766999873 44
Q ss_pred cccccccCCchhhh
Q psy6940 101 APKLHLSLNESELL 114 (123)
Q Consensus 101 ~~~~~~~~~~~~~~ 114 (123)
.|+.....++.++.
T Consensus 228 ~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 228 KGKIVEKGTHKDLL 241 (260)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 56665555555543
No 34
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=7e-26 Score=192.62 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=93.4
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
.+++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.. .|.|||+||||
T Consensus 448 ~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHd 527 (608)
T 3j16_B 448 QTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527 (608)
T ss_dssp HHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999864 59999999999
Q ss_pred HHHHHh-hcceeeecc--cccccccCCchhhh
Q psy6940 86 IEEARQ-ANTVFGGFF--APKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~-~d~v~~~~~--~~~~~~~~~~~~~~ 114 (123)
++++.. |||++. +- .|+.....++.+++
T Consensus 528 l~~~~~~aDrviv-l~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 528 FIMATYLADKVIV-FEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHHHHHHCSEEEE-CEEETTTEEECCCCEEHH
T ss_pred HHHHHHhCCEEEE-EeCCCCeEEecCChHHHh
Confidence 999998 999984 22 24555556665554
No 35
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=1.3e-25 Score=190.84 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=87.0
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+.+++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||+..+..++++|+++.++|.|||+||||
T Consensus 208 ~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHd 287 (607)
T 3bk7_A 208 KFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287 (607)
T ss_dssp CHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46789999999999999999999999999999999999999999999999999999999999999998779999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 288 l~~~~~~adri~ 299 (607)
T 3bk7_A 288 LAVLDYLSDVIH 299 (607)
T ss_dssp HHHHHHHCSEEE
T ss_pred hHHHHhhCCEEE
Confidence 999988 99987
No 36
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=5.7e-26 Score=190.66 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=84.9
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
.+++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+++.|+++++ .|.|||+||||
T Consensus 366 ~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 445 (538)
T 3ozx_A 366 FEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHD 445 (538)
T ss_dssp HHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35678888999999999999999999999999999999999999999999999999999999999975 59999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 446 l~~~~~~aDri~ 457 (538)
T 3ozx_A 446 LSIHDYIADRII 457 (538)
T ss_dssp HHHHHHHCSEEE
T ss_pred HHHHHHhCCEEE
Confidence 999998 99998
No 37
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=1.8e-25 Score=176.58 Aligned_cols=93 Identities=25% Similarity=0.298 Sum_probs=82.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeec
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGF 99 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~ 99 (123)
.+.++.+|||||||||+|||||+.+|++|||||||++||+.....+++.|.++. +++|+|+|||+++.+..||+|+. +
T Consensus 184 ~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~aD~i~v-l 261 (306)
T 3nh6_A 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLSTVVNADQILV-I 261 (306)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHHHHTCSEEEE-E
T ss_pred hcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHHHHcCCEEEE-E
Confidence 355668999999999999999999999999999999999999999999999986 47899999999999988999983 4
Q ss_pred ccccccccCCchhhh
Q psy6940 100 FAPKLHLSLNESELL 114 (123)
Q Consensus 100 ~~~~~~~~~~~~~~~ 114 (123)
-.|+.....+..+++
T Consensus 262 ~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 262 KDGCIVERGRHEALL 276 (306)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 567777777776665
No 38
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.7e-25 Score=187.06 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=86.3
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+++++.+++....++++.+|||||||||+|||||+.+|++|||||||++||+..+..++++|++++++|.|||+|||++
T Consensus 202 ~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 202 VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp HHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred HHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 56789999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHh-hccee
Q psy6940 87 EEARQ-ANTVF 96 (123)
Q Consensus 87 ~~~~~-~d~v~ 96 (123)
+++.. ||+++
T Consensus 282 ~~~~~~~drv~ 292 (608)
T 3j16_B 282 SVLDYLSDFVC 292 (608)
T ss_dssp HHHHHHCSEEE
T ss_pred HHHHHhCCEEE
Confidence 99998 99987
No 39
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.92 E-value=5.5e-25 Score=184.69 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=85.7
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..+++++.+++....++++.+|||||||||+|||||+.+|++|||||||++||+..+..++++|+++++ |+|||+||||
T Consensus 118 ~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHd 196 (538)
T 3ozx_A 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHD 196 (538)
T ss_dssp CHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSC
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999999999975 9999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 197 l~~~~~~~d~i~ 208 (538)
T 3ozx_A 197 LIVLDYLTDLIH 208 (538)
T ss_dssp HHHHHHHCSEEE
T ss_pred hHHHHhhCCEEE
Confidence 999988 99887
No 40
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=181.97 Aligned_cols=106 Identities=21% Similarity=0.242 Sum_probs=92.6
Q ss_pred HHHHHHHcCcchhcCCCCCC-----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q psy6940 7 PAEILTRTRDFALRKLLPNW-----------TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ 75 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~-----------LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~ 75 (123)
..++++.+++.++.+++|.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++. .
T Consensus 125 v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~ 203 (390)
T 3gd7_A 125 IWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-A 203 (390)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-C
Confidence 45688899999999999998 99999999999999999999999999999999999999999998764 5
Q ss_pred CcEEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 76 GQTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 76 g~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+.|+|++||+++.+..||+++. +-.|+.....++.++.
T Consensus 204 ~~tvi~vtHd~e~~~~aDri~v-l~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 204 DCTVILCEARIEAMLECDQFLV-IEENKVRQYDSILELY 241 (390)
T ss_dssp TSCEEEECSSSGGGTTCSEEEE-EETTEEEEESSHHHHH
T ss_pred CCEEEEEEcCHHHHHhCCEEEE-EECCEEEEECCHHHHH
Confidence 8999999999876655999873 5577777777776654
No 41
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=4e-25 Score=185.27 Aligned_cols=91 Identities=25% Similarity=0.295 Sum_probs=84.2
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++++++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|||+||||
T Consensus 382 ~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 382 KTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461 (538)
T ss_dssp HHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35667788888889999999999999999999999999999999999999999999999999999864 59999999999
Q ss_pred HHHHHh-hcceee
Q psy6940 86 IEEARQ-ANTVFG 97 (123)
Q Consensus 86 ~~~~~~-~d~v~~ 97 (123)
++++.. ||+++.
T Consensus 462 ~~~~~~~~drv~v 474 (538)
T 1yqt_A 462 VLMIDYVSDRLMV 474 (538)
T ss_dssp HHHHHHHCSEEEE
T ss_pred HHHHHHhCCEEEE
Confidence 999988 999883
No 42
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=5.7e-25 Score=187.33 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=90.6
Q ss_pred HHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 10 ILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSPS--LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 10 ~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p~--lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+++.+++.+. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+..++++|++++++|.|||+||||+
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3667777654 689999999999999999999999998 9999999999999999999999999988899999999999
Q ss_pred HHHHhhcceeee-----cccccccccCCchhhh
Q psy6940 87 EEARQANTVFGG-----FFAPKLHLSLNESELL 114 (123)
Q Consensus 87 ~~~~~~d~v~~~-----~~~~~~~~~~~~~~~~ 114 (123)
+++..||+++.- +..|+.....++.++.
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 987669999832 3577777666666554
No 43
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.92 E-value=4.9e-25 Score=167.61 Aligned_cols=92 Identities=21% Similarity=0.246 Sum_probs=77.2
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLN---RLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~---~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
.++++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.+. ++. +|+|||++||+++.+..||+++
T Consensus 121 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~ 199 (237)
T 2cbz_A 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVII 199 (237)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEE
Confidence 467899999999999999999999999999999999999999999999885 333 5899999999999875699987
Q ss_pred eecccccccccCCchhh
Q psy6940 97 GGFFAPKLHLSLNESEL 113 (123)
Q Consensus 97 ~~~~~~~~~~~~~~~~~ 113 (123)
. +-.|+.....++.++
T Consensus 200 ~-l~~G~i~~~g~~~~~ 215 (237)
T 2cbz_A 200 V-MSGGKISEMGSYQEL 215 (237)
T ss_dssp E-EETTEEEEEECHHHH
T ss_pred E-EeCCEEEEeCCHHHH
Confidence 3 345555555555544
No 44
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.92 E-value=7.7e-25 Score=165.63 Aligned_cols=90 Identities=23% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYL-NRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l-~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
+++.+|||||||||+|||||+.+|+++||||||+|||+..++.+++.+ .++. +|+|||++||+++++..||+++. +-
T Consensus 126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~-l~ 203 (229)
T 2pze_A 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILI-LH 203 (229)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEE-EE
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEE-EE
Confidence 346899999999999999999999999999999999999999999864 5554 48999999999998866999873 34
Q ss_pred cccccccCCchhh
Q psy6940 101 APKLHLSLNESEL 113 (123)
Q Consensus 101 ~~~~~~~~~~~~~ 113 (123)
.|+.....++.++
T Consensus 204 ~G~i~~~g~~~~~ 216 (229)
T 2pze_A 204 EGSSYFYGTFSEL 216 (229)
T ss_dssp TTEEEEEECHHHH
T ss_pred CCEEEEECCHHHH
Confidence 5555544444444
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=1.1e-24 Score=185.25 Aligned_cols=90 Identities=24% Similarity=0.293 Sum_probs=84.8
Q ss_pred HHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
..++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|||+||||
T Consensus 452 ~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 452 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 35678899998999999999999999999999999999999999999999999999999999999864 59999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 532 ~~~~~~~adrv~ 543 (607)
T 3bk7_A 532 VLMIDYVSDRLI 543 (607)
T ss_dssp HHHHHHHCSEEE
T ss_pred HHHHHHhCCEEE
Confidence 999988 99988
No 46
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.91 E-value=2.5e-24 Score=183.40 Aligned_cols=107 Identities=24% Similarity=0.265 Sum_probs=91.6
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p---~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.+.++.+++.. ..++++.+|||||||||+|||||+.+| ++|||||||+|||+..+..++++|++++++|.|||+||
T Consensus 524 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vt 603 (670)
T 3ux8_A 524 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603 (670)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34566667653 468899999999999999999999887 59999999999999999999999999988899999999
Q ss_pred CCHHHHHhhcceee-----ecccccccccCCchhhh
Q psy6940 84 HYIEEARQANTVFG-----GFFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~~d~v~~-----~~~~~~~~~~~~~~~~~ 114 (123)
||++.+..||+++. +...|+.....++.++.
T Consensus 604 Hd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 604 HNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99998866999984 23678888877777764
No 47
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.91 E-value=2.7e-24 Score=180.80 Aligned_cols=105 Identities=24% Similarity=0.314 Sum_probs=87.0
Q ss_pred HHHHHHcCcchhcCC-----------CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy6940 8 AEILTRTRDFALRKL-----------LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~-----------~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g 76 (123)
.++++.+++.++.++ ++.+||||||||++||||++.+|++++|||||++||+..++.+.+.++++. +|
T Consensus 451 ~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~ 529 (582)
T 3b5x_A 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KN 529 (582)
T ss_pred HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CC
Confidence 356667776655444 458999999999999999999999999999999999999999999999986 48
Q ss_pred cEEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 77 QTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 77 ~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+|+|++||+++.+..||+++. +-.|+.....+.+++.
T Consensus 530 ~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 530 KTVLVIAHRLSTIEQADEILV-VDEGEIIERGRHADLL 566 (582)
T ss_pred CEEEEEecCHHHHHhCCEEEE-EECCEEEEECCHHHHH
Confidence 999999999999877999883 3456666556665554
No 48
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.91 E-value=4.4e-24 Score=179.89 Aligned_cols=102 Identities=26% Similarity=0.328 Sum_probs=82.3
Q ss_pred HHHHHHcCcchhc-----------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy6940 8 AEILTRTRDFALR-----------KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 8 ~e~l~~~~l~~~~-----------~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g 76 (123)
.++++.+++.++. +.++.+||||||||++||||++.+|+++||||||++||+.+++.+.+.++++.+ |
T Consensus 454 ~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~ 532 (595)
T 2yl4_A 454 QRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-G 532 (595)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-C
Confidence 3566777765433 234589999999999999999999999999999999999999999999999875 8
Q ss_pred cEEEEEeCCHHHHHhhcceeeecccccccccCCch
Q psy6940 77 QTIIITTHYIEEARQANTVFGGFFAPKLHLSLNES 111 (123)
Q Consensus 77 ~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~ 111 (123)
+|+|++||+++.+..||+++. +-.|+.....+.+
T Consensus 533 ~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 533 RTVLVIAHRLSTIKNANMVAV-LDQGKITEYGKHE 566 (595)
T ss_dssp SEEEEECCCHHHHHHSSEEEE-EETTEEEEEECSC
T ss_pred CEEEEEecCHHHHHcCCEEEE-EECCEEEEECCHH
Confidence 999999999999877999883 2344444333333
No 49
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.91 E-value=2.7e-24 Score=180.79 Aligned_cols=105 Identities=26% Similarity=0.264 Sum_probs=86.8
Q ss_pred HHHHHHcCcchhc-----------CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC
Q psy6940 8 AEILTRTRDFALR-----------KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 8 ~e~l~~~~l~~~~-----------~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g 76 (123)
.++++.+++.++. +.++.+||||||||++||||++++|+++||||||++||+.+++.+.+.++++.+ |
T Consensus 451 ~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~ 529 (582)
T 3b60_A 451 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-N 529 (582)
T ss_dssp HHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-C
Confidence 3456666665433 345689999999999999999999999999999999999999999999999864 8
Q ss_pred cEEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 77 QTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 77 ~tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
+|+|++||+++.+..||+++. +-.|+.....+.+++.
T Consensus 530 ~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~ 566 (582)
T 3b60_A 530 RTSLVIAHRLSTIEQADEIVV-VEDGIIVERGTHSELL 566 (582)
T ss_dssp SEEEEECSCGGGTTTCSEEEE-EETTEEEEEECHHHHH
T ss_pred CEEEEEeccHHHHHhCCEEEE-EECCEEEEecCHHHHH
Confidence 999999999998877999884 4466666666666654
No 50
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.90 E-value=4.8e-24 Score=152.77 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=70.0
Q ss_pred cCCCCCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-h
Q psy6940 20 RKLLPNWTVGGQVRRVSIA------VTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-A 92 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~ia------raL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~ 92 (123)
.++++.+||||||||++|| ||++.+|+++||||||+|||+..+..+.+.+.++.++|.|||++||+++ +.. |
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 5678999999999999876 8999999999999999999999999999999998767899999999994 555 9
Q ss_pred cceee
Q psy6940 93 NTVFG 97 (123)
Q Consensus 93 d~v~~ 97 (123)
|+++.
T Consensus 130 d~ii~ 134 (148)
T 1f2t_B 130 DHVIR 134 (148)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99883
No 51
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=1e-23 Score=177.85 Aligned_cols=94 Identities=31% Similarity=0.341 Sum_probs=83.5
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeee
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGG 98 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~ 98 (123)
..+.++.+||||||||++||||++++|+++||||||++||+...+.+.+.++++. +|+|+|++||+++.+..||+++.
T Consensus 472 ~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~v- 549 (587)
T 3qf4_A 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILV- 549 (587)
T ss_dssp EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEE-
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEE-
Confidence 4467889999999999999999999999999999999999999999999999875 58999999999999877999984
Q ss_pred cccccccccCCchhhh
Q psy6940 99 FFAPKLHLSLNESELL 114 (123)
Q Consensus 99 ~~~~~~~~~~~~~~~~ 114 (123)
+-.|+.....+.+++.
T Consensus 550 l~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 550 LHEGKVAGFGTHKELL 565 (587)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 4567777777777765
No 52
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=9.8e-24 Score=186.16 Aligned_cols=108 Identities=24% Similarity=0.296 Sum_probs=94.2
Q ss_pred HHHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p---~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++... .++++.+|||||||||+|||+|+.+| ++|||||||+|||+..++.+++.|++++++|.|||+||
T Consensus 786 ~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~ 865 (916)
T 3pih_A 786 LQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIE 865 (916)
T ss_dssp HHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 355667777543 47899999999999999999999875 79999999999999999999999999988899999999
Q ss_pred CCHHHHHhhccee-----eecccccccccCCchhhhh
Q psy6940 84 HYIEEARQANTVF-----GGFFAPKLHLSLNESELLV 115 (123)
Q Consensus 84 H~~~~~~~~d~v~-----~~~~~~~~~~~~~~~~~~~ 115 (123)
||++++..||+|+ +|...|+.....++.++..
T Consensus 866 HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 866 HNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 9999987799998 3347888888888888764
No 53
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.90 E-value=8.5e-24 Score=178.54 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=87.3
Q ss_pred HHHHHcCcchhcCCCC-----------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc
Q psy6940 9 EILTRTRDFALRKLLP-----------NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77 (123)
Q Consensus 9 e~l~~~~l~~~~~~~~-----------~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~ 77 (123)
++++.+++.++.+..| .+||||||||++||||++.+|+++||||||++||+.+...+.+.++++. +|+
T Consensus 463 ~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~ 541 (598)
T 3qf4_B 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGK 541 (598)
T ss_dssp HHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCC
Confidence 3444455555555544 6899999999999999999999999999999999999999999999885 589
Q ss_pred EEEEEeCCHHHHHhhcceeeecccccccccCCchhhh
Q psy6940 78 TIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELL 114 (123)
Q Consensus 78 tviivtH~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 114 (123)
|+|++||+++.+..||+++. +-.|+.....+.+++.
T Consensus 542 t~i~itH~l~~~~~~d~i~~-l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 542 TSIIIAHRLNTIKNADLIIV-LRDGEIVEMGKHDELI 577 (598)
T ss_dssp EEEEESCCTTHHHHCSEEEE-ECSSSEEECSCHHHHH
T ss_pred EEEEEecCHHHHHcCCEEEE-EECCEEEEECCHHHHH
Confidence 99999999999877999984 4567777777777765
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=6e-24 Score=166.52 Aligned_cols=89 Identities=24% Similarity=0.245 Sum_probs=72.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYL-NRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l-~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
++.+|||||||||+|||||+.+|+++||||||+|||+..+..+++.+ .++. +|+|||++||+++.+..||+++. +-.
T Consensus 156 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~-l~~ 233 (290)
T 2bbs_A 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILI-LHE 233 (290)
T ss_dssp --CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEE-EET
T ss_pred ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEE-EEC
Confidence 45899999999999999999999999999999999999999999864 4554 58999999999998866999884 345
Q ss_pred ccccccCCchhh
Q psy6940 102 PKLHLSLNESEL 113 (123)
Q Consensus 102 ~~~~~~~~~~~~ 113 (123)
|+.....++.++
T Consensus 234 G~i~~~g~~~~l 245 (290)
T 2bbs_A 234 GSSYFYGTFSEL 245 (290)
T ss_dssp TEEEEEECHHHH
T ss_pred CeEEEeCCHHHH
Confidence 555544444444
No 55
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.90 E-value=1.3e-23 Score=176.57 Aligned_cols=91 Identities=30% Similarity=0.355 Sum_probs=79.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFA 101 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~ 101 (123)
.++.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.++++. +|+|+|++||+++.+..||+++. +-.
T Consensus 473 ~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~-l~~ 550 (578)
T 4a82_A 473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVV-IEN 550 (578)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEE-EET
T ss_pred cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEE-EEC
Confidence 3446999999999999999999999999999999999999999999998875 57899999999999877999984 456
Q ss_pred ccccccCCchhhh
Q psy6940 102 PKLHLSLNESELL 114 (123)
Q Consensus 102 ~~~~~~~~~~~~~ 114 (123)
|+.....+.+++.
T Consensus 551 G~i~~~g~~~el~ 563 (578)
T 4a82_A 551 GHIVETGTHRELI 563 (578)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 7777777777765
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=4.4e-23 Score=182.04 Aligned_cols=106 Identities=26% Similarity=0.338 Sum_probs=91.6
Q ss_pred HHHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 9 EILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSPS--LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 9 e~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p~--lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+.+..+|+..+ .++++.+|||||||||+|||||+.+|+ +|||||||+||||.....+++.|++++++|.|||+||||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45666787655 689999999999999999999999887 999999999999999999999999998889999999999
Q ss_pred HHHHHhhcceee-----ecccccccccCCchhhh
Q psy6940 86 IEEARQANTVFG-----GFFAPKLHLSLNESELL 114 (123)
Q Consensus 86 ~~~~~~~d~v~~-----~~~~~~~~~~~~~~~~~ 114 (123)
++++..||+++. |...|+.....++.++.
T Consensus 526 ~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 526 EEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp HHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred HHHHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 998877999983 23567777777666654
No 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=6.6e-23 Score=179.65 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=92.4
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHS---PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~---p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.. ..++++.+|||||||||+||++|+.+ |+++||||||+|||+..++.+.+.|++++++|.|||+||
T Consensus 711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvis 790 (842)
T 2vf7_A 711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790 (842)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 46777888876 35899999999999999999999996 799999999999999999999999999988899999999
Q ss_pred CCHHHHHhhcceee-----ecccccccccCCchhhh
Q psy6940 84 HYIEEARQANTVFG-----GFFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~~d~v~~-----~~~~~~~~~~~~~~~~~ 114 (123)
||++++..||+++. |...|+.....++.++.
T Consensus 791 Hdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 99999944999883 22567777666666654
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.88 E-value=8.8e-23 Score=180.63 Aligned_cols=107 Identities=23% Similarity=0.231 Sum_probs=92.5
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p---~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.. ..++++.+|||||||||+||++|+.+| +++||||||+|||+..+..+++.|++++++|.|||+||
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 905 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 46778888876 678999999999999999999999875 99999999999999999999999999988899999999
Q ss_pred CCHHHHHhhcceeee-----cccccccccCCchhhh
Q psy6940 84 HYIEEARQANTVFGG-----FFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~~d~v~~~-----~~~~~~~~~~~~~~~~ 114 (123)
||++++..||+++.- ...|+.....++.++.
T Consensus 906 Hdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 906 HNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 999998559998842 2567777666666554
No 59
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=8.2e-23 Score=163.77 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=71.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLL------HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
++++.+|||||||||+||+||+ .+|+++||||||+|||+..+..+++.+++++++|.|||+|||+++.+..||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 5789999999999999999999 7999999999999999999999999999998789999999999998555999
Q ss_pred eee
Q psy6940 95 VFG 97 (123)
Q Consensus 95 v~~ 97 (123)
++.
T Consensus 354 ~~~ 356 (365)
T 3qf7_A 354 KLR 356 (365)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 60
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=2e-22 Score=178.76 Aligned_cols=107 Identities=20% Similarity=0.189 Sum_probs=92.2
Q ss_pred HHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHHHHhcCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 8 AEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAVTLLHSP---SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 8 ~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iaraL~~~p---~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++++.+++.. ..++++.+|||||||||+||++|+.+| +++||||||+|||+..+..+++.|++++++|.|||+||
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 35677888876 678999999999999999999999875 99999999999999999999999999988899999999
Q ss_pred CCHHHHHhhcceeee-----cccccccccCCchhhh
Q psy6940 84 HYIEEARQANTVFGG-----FFAPKLHLSLNESELL 114 (123)
Q Consensus 84 H~~~~~~~~d~v~~~-----~~~~~~~~~~~~~~~~ 114 (123)
||++++..||+++.- ...|+.....++.++.
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 999998559998832 2567777666666654
No 61
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.87 E-value=1.9e-22 Score=178.91 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=81.5
Q ss_pred HHHHHHHcCc-chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 7 PAEILTRTRD-FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 7 ~~e~l~~~~l-~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..++++.+++ ..+.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|++ .|.|||++|||
T Consensus 528 v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHd 604 (986)
T 2iw3_A 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHD 604 (986)
T ss_dssp HHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSC
T ss_pred HHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECC
Confidence 4578899998 4788999999999999999999999999999999999999999999999999987 58999999999
Q ss_pred HHHHHh-hccee
Q psy6940 86 IEEARQ-ANTVF 96 (123)
Q Consensus 86 ~~~~~~-~d~v~ 96 (123)
++++.. ||+++
T Consensus 605 l~~l~~~adrii 616 (986)
T 2iw3_A 605 SVFLDNVCEYII 616 (986)
T ss_dssp HHHHHHHCSEEE
T ss_pred HHHHHHhCCEEE
Confidence 999988 99988
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.87 E-value=2.2e-22 Score=178.10 Aligned_cols=105 Identities=20% Similarity=0.246 Sum_probs=90.7
Q ss_pred HHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 10 ILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 10 ~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+..+|+..+ .++++.+|||||+|||+||++|..+| ++|||||||+||||...+.+++.|+++++.|.|||+|||++
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 3667787765 69999999999999999999999985 99999999999999999999999999988899999999999
Q ss_pred HHHHhhcceee-----ecccccccccCCchhhh
Q psy6940 87 EEARQANTVFG-----GFFAPKLHLSLNESELL 114 (123)
Q Consensus 87 ~~~~~~d~v~~-----~~~~~~~~~~~~~~~~~ 114 (123)
+++..||+|+. |..+|+.....++.++.
T Consensus 567 ~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 567 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp HHHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred HHHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 98877999983 23567766666666554
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.87 E-value=4.3e-22 Score=176.63 Aligned_cols=106 Identities=25% Similarity=0.256 Sum_probs=92.1
Q ss_pred HHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 10 ILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHS--PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 10 ~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~--p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+..+|+..+ .++++.+|||||+|||+||++|+.+ |++|||||||+||||...+.+++.|+++++.|.|||+||||+
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 3566777665 6899999999999999999999999 599999999999999999999999999998899999999999
Q ss_pred HHHHhhcceee-----ecccccccccCCchhhhh
Q psy6940 87 EEARQANTVFG-----GFFAPKLHLSLNESELLV 115 (123)
Q Consensus 87 ~~~~~~d~v~~-----~~~~~~~~~~~~~~~~~~ 115 (123)
+++..||+|+. |.-+|+.....++.++..
T Consensus 584 ~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 584 DTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 98877999983 235777777777776653
No 64
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.86 E-value=5.1e-22 Score=179.63 Aligned_cols=90 Identities=27% Similarity=0.401 Sum_probs=79.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+|||||||||+|||||+.+|+++||||||++||+.+.+.+.+.+++.. +|+|||+|||+++++..||+++. +-.|
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~i~~~dri~v-l~~G 1245 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTIQNADLIVV-IQNG 1245 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTGGGSCSEEEE-EETB
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHHHHcCCEEEE-EECC
Confidence 346899999999999999999999999999999999999999999998754 58999999999999877999884 5567
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+.....++.+++
T Consensus 1246 ~i~~~g~~~~l~ 1257 (1284)
T 3g5u_A 1246 KVKEHGTHQQLL 1257 (1284)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 777777777765
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=1e-21 Score=172.20 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=90.4
Q ss_pred HHHHcCcchh-cCCCCCCCCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 10 ILTRTRDFAL-RKLLPNWTVGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 10 ~l~~~~l~~~-~~~~~~~LSgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+..+|+..+ .++++.+|||||||||+||++|+.+| +++||||||++||+...+.+++.++++++.|.|||+|||++
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4667787765 69999999999999999999999999 59999999999999999999999999988899999999999
Q ss_pred HHHHhhcceeee-----cccccccccCCchhhh
Q psy6940 87 EEARQANTVFGG-----FFAPKLHLSLNESELL 114 (123)
Q Consensus 87 ~~~~~~d~v~~~-----~~~~~~~~~~~~~~~~ 114 (123)
+++..||+|+.- ..+|+.....++.++.
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 977669999832 2466666666666554
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.85 E-value=7.5e-22 Score=175.13 Aligned_cols=95 Identities=22% Similarity=0.235 Sum_probs=81.7
Q ss_pred HHHHHHHcCcch-h-cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 7 PAEILTRTRDFA-L-RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 7 ~~e~l~~~~l~~-~-~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.+++++.+|+.. + .++++.+|||||||||+|||||+.+|++|||||||+|||+.....+.+.|+++ |.|||++||
T Consensus 880 i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISH 956 (986)
T 2iw3_A 880 IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITH 956 (986)
T ss_dssp HHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECS
T ss_pred HHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEEC
Confidence 356788899864 4 68899999999999999999999999999999999999999999988888654 569999999
Q ss_pred CHHHHHh-hcceeeeccccccc
Q psy6940 85 YIEEARQ-ANTVFGGFFAPKLH 105 (123)
Q Consensus 85 ~~~~~~~-~d~v~~~~~~~~~~ 105 (123)
|++++.. ||+++. +..|+..
T Consensus 957 D~e~v~~l~DrViv-L~~G~Iv 977 (986)
T 2iw3_A 957 SAEFTKNLTEEVWA-VKDGRMT 977 (986)
T ss_dssp CHHHHTTTCCEEEC-CBTTBCC
T ss_pred CHHHHHHhCCEEEE-EECCEEE
Confidence 9999988 999883 3345443
No 67
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.85 E-value=9.5e-22 Score=178.25 Aligned_cols=90 Identities=26% Similarity=0.379 Sum_probs=81.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecccc
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAP 102 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~ 102 (123)
...+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +|+|+|+|+|.++.+..||+|+. +=+|
T Consensus 1214 ~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~V-ld~G 1291 (1321)
T 4f4c_A 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAV-VSNG 1291 (1321)
T ss_dssp TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEE-ESSS
T ss_pred CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEE-EECC
Confidence 446799999999999999999999999999999999999999999998754 58999999999999999999985 5588
Q ss_pred cccccCCchhhh
Q psy6940 103 KLHLSLNESELL 114 (123)
Q Consensus 103 ~~~~~~~~~~~~ 114 (123)
+....+++.+|+
T Consensus 1292 ~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1292 TIIEKGTHTQLM 1303 (1321)
T ss_dssp SEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 888888888887
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.84 E-value=6.1e-21 Score=172.62 Aligned_cols=92 Identities=29% Similarity=0.430 Sum_probs=80.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
...+.+||||||||++||||++.+|+++||||||++||+.+.+.+.+.++++. +|+|+|+|||+++.+..||+|+. +-
T Consensus 521 ~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~v-l~ 598 (1284)
T 3g5u_A 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAG-FD 598 (1284)
T ss_dssp SSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEE-CS
T ss_pred cCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEE-EE
Confidence 45677999999999999999999999999999999999999999999998765 58999999999999988999884 44
Q ss_pred cccccccCCchhhh
Q psy6940 101 APKLHLSLNESELL 114 (123)
Q Consensus 101 ~~~~~~~~~~~~~~ 114 (123)
.|+.....+..++.
T Consensus 599 ~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 599 GGVIVEQGNHDELM 612 (1284)
T ss_dssp SSCCCCEECHHHHH
T ss_pred CCEEEEECCHHHHH
Confidence 66666666666665
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.83 E-value=1.4e-20 Score=150.41 Aligned_cols=70 Identities=26% Similarity=0.419 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 27 TVGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
||||||||++||++|+.+| ++|||||||+|||+..+..+.+.|+++. +|.|||+|||+++++..||+++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEE
Confidence 6999999999999999999 9999999999999999999999999987 68999999999987755999884
No 70
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=1e-20 Score=149.51 Aligned_cols=79 Identities=25% Similarity=0.288 Sum_probs=69.7
Q ss_pred hcCCCCCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhh
Q psy6940 19 LRKLLPNWTVGGQVR------RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQA 92 (123)
Q Consensus 19 ~~~~~~~~LSgGqrq------rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~ 92 (123)
..++++.+||||||| |+++|++++.+|+++||||||+|||+..+..+.++|.++..+|.|||++||+.+....|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 456789999999999 67788888899999999999999999999999999999877788999999997644349
Q ss_pred cceee
Q psy6940 93 NTVFG 97 (123)
Q Consensus 93 d~v~~ 97 (123)
|+++.
T Consensus 321 d~~~~ 325 (339)
T 3qkt_A 321 DHVIR 325 (339)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99883
No 71
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.82 E-value=4.4e-20 Score=135.20 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=68.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcce
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLH----SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTV 95 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~----~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v 95 (123)
..+++..||||||||++||++++. +|+++||||||+|||+.+...+.++|+++.. +.++|++||+......||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEE
Confidence 456788999999999999999974 4699999999999999999999999998864 46899999998776569999
Q ss_pred eee
Q psy6940 96 FGG 98 (123)
Q Consensus 96 ~~~ 98 (123)
++-
T Consensus 137 ~~v 139 (173)
T 3kta_B 137 IGV 139 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
No 72
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.82 E-value=1.3e-20 Score=170.85 Aligned_cols=92 Identities=27% Similarity=0.387 Sum_probs=81.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeecc
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~ 100 (123)
.....+||||||||++||||+..+|+++|||||||+||+.+...+.+.|.++. +|+|+|+|||++..+..||+|+. +-
T Consensus 549 Ge~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iiv-l~ 626 (1321)
T 4f4c_A 549 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIIS-CK 626 (1321)
T ss_dssp SSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEE-EE
T ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEE-ee
Confidence 34567899999999999999999999999999999999999999999998876 58999999999999988999984 45
Q ss_pred cccccccCCchhhh
Q psy6940 101 APKLHLSLNESELL 114 (123)
Q Consensus 101 ~~~~~~~~~~~~~~ 114 (123)
+|+....++.+++.
T Consensus 627 ~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 627 NGQVVEVGDHRALM 640 (1321)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCeeeccCCHHHHH
Confidence 67777777777765
No 73
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=3.5e-20 Score=153.73 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 21 KLLPNWT-VGGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 21 ~~~~~~L-SgGqrqrv~iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
.+++..| ||||||||+||++++.+| ++|||||||+|||+..+..+.+.|+++++ |.|||+|||+++.+..||+++.
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~ 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYK 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEE
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEE
Confidence 3567888 999999999999999999 99999999999999999999999999986 8999999999998777999983
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.80 E-value=1.3e-19 Score=142.09 Aligned_cols=77 Identities=26% Similarity=0.272 Sum_probs=67.8
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcc
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~ 94 (123)
..+.++.+||+|||||++||++|+ .+|+++||||||++||+..++.+.+.++++. +|.+||++||+.+....||+
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCce
Confidence 356678999999999999999997 6899999999999999999999999999984 58899999999754444998
Q ss_pred ee
Q psy6940 95 VF 96 (123)
Q Consensus 95 v~ 96 (123)
+.
T Consensus 291 ~~ 292 (322)
T 1e69_A 291 LH 292 (322)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.78 E-value=2.9e-20 Score=133.89 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=65.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----------------LANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~----------------~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
....|+|||||++||+|++.+|++++|||||++||+. .+..+.+.+++++++|.|+|++|||++
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 3456999999999999999999999999999999999 558889988888777999999999999
Q ss_pred HHHhhccee
Q psy6940 88 EARQANTVF 96 (123)
Q Consensus 88 ~~~~~d~v~ 96 (123)
++..++++.
T Consensus 161 ~~~~~~~~~ 169 (171)
T 4gp7_A 161 EVEEVVFER 169 (171)
T ss_dssp HHHHEEEEE
T ss_pred Hhhhhhhcc
Confidence 998766654
No 76
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=4.7e-18 Score=137.75 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=70.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLL----HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~----~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
.+++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.+.++..+|.++|++||+...+..||+++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~ 407 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALV 407 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEE
Confidence 4566789999999999999999 589999999999999999999999999988766889999999977665599998
Q ss_pred eecc
Q psy6940 97 GGFF 100 (123)
Q Consensus 97 ~~~~ 100 (123)
+--.
T Consensus 408 ~~~~ 411 (430)
T 1w1w_A 408 GVYR 411 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6443
No 77
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.72 E-value=3.8e-18 Score=124.54 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=63.9
Q ss_pred hcCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe---CCHHH
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVT-----LLHSPSLVILDE--PTSGLDPVLANIFWRYLNRLSVQGQTIIITT---HYIEE 88 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iara-----L~~~p~lliLDE--Pt~gLD~~~~~~i~~~l~~l~~~g~tviivt---H~~~~ 88 (123)
..++++.+||||||||++||+| ++.+|+++|||| ||+++|+..++.+.+.+.+ .+.|+|+++ |+..+
T Consensus 69 ~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 69 LVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp EETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHH
T ss_pred cccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchH
Confidence 4567788999999999999996 999999999999 9999999999888887765 467788888 58888
Q ss_pred HHh-hcc
Q psy6940 89 ARQ-ANT 94 (123)
Q Consensus 89 ~~~-~d~ 94 (123)
+.. |++
T Consensus 146 ~~~i~~r 152 (178)
T 1ye8_A 146 VKEIRRL 152 (178)
T ss_dssp HHHHHTC
T ss_pred HHHHHhc
Confidence 887 887
No 78
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.70 E-value=3.3e-17 Score=130.79 Aligned_cols=74 Identities=28% Similarity=0.317 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hc
Q psy6940 22 LLPNWTVGGQVRRV------SIAVTLLHS-PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-AN 93 (123)
Q Consensus 22 ~~~~~LSgGqrqrv------~iaraL~~~-p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d 93 (123)
.++..|||||+||+ ++|++++.+ |+++||||||+|||+..+..+.+.+.++. ++.+||++||+++. .. ||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~~-~~~~d 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHREL-EDVAD 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGGG-GGGCS
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHHH-HhhCC
Confidence 56789999999988 567899999 99999999999999999999999998864 34689999999874 45 99
Q ss_pred ceee
Q psy6940 94 TVFG 97 (123)
Q Consensus 94 ~v~~ 97 (123)
+++.
T Consensus 354 ~~~~ 357 (371)
T 3auy_A 354 VIIN 357 (371)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 79
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.66 E-value=4.5e-17 Score=130.94 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=69.5
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 21 KLLPN-WTVGGQVRRVSIAVTLL---------HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 21 ~~~~~-~LSgGqrqrv~iaraL~---------~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
++++. .+|+|||||++||++|+ .+|++++|||||++||+..+..+++.+.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 56777 89999999999999999 8999999999999999999999999998764 699999994 43
Q ss_pred hhcceeeecccccccccCCchh
Q psy6940 91 QANTVFGGFFAPKLHLSLNESE 112 (123)
Q Consensus 91 ~~d~v~~~~~~~~~~~~~~~~~ 112 (123)
.||+++. +-.|+......+.+
T Consensus 333 ~~~~i~~-l~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 333 GAALTLR-AQAGRFTPVADEEM 353 (359)
T ss_dssp TCSEEEE-EETTEEEECCCTTT
T ss_pred cCCEEEE-EECCEEEecCCHHH
Confidence 6777763 33555555444443
No 80
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.2e-18 Score=139.27 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=74.9
Q ss_pred HHHHHcCcchhcCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHhhCCcEEEE
Q psy6940 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVT--LLHSPSL----VILDE-PTSGLDPVLANIFWRYLNRLSVQGQTIII 81 (123)
Q Consensus 9 e~l~~~~l~~~~~~~~~~LSgGqrqrv~iara--L~~~p~l----liLDE-Pt~gLD~~~~~~i~~~l~~l~~~g~tvii 81 (123)
++++.+|+....+ +.+|||||||||++||| |+.+|++ +|||| ||++||+. .+.+.+++++ .|.|+|+
T Consensus 220 ~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tvii 293 (460)
T 2npi_A 220 PMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIML 293 (460)
T ss_dssp CEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEE
T ss_pred HHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEE
Confidence 3455566666555 88999999999999999 9999999 99999 99999998 5555555544 3789999
Q ss_pred EeCCHH------HHHh-hcc-----eeeecc-cccccccCCchhh
Q psy6940 82 TTHYIE------EARQ-ANT-----VFGGFF-APKLHLSLNESEL 113 (123)
Q Consensus 82 vtH~~~------~~~~-~d~-----v~~~~~-~~~~~~~~~~~~~ 113 (123)
++|+.+ ++.. ||+ ++. +- .|+.. ..++.++
T Consensus 294 Vth~~~~~l~~~~~~~~~dr~~~~~vi~-l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 294 VLCSETDPLWEKVKKTFGPELGNNNIFF-IPKLDGVS-AVDDVYK 336 (460)
T ss_dssp EECCSSCTHHHHHHHHHHHHHCGGGEEE-ECCCTTCC-CCCHHHH
T ss_pred EEccCchhhhHHHHHHhcccccCCEEEE-EeCCCcEE-ECCHHHH
Confidence 999887 6666 998 663 33 56666 5555544
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.61 E-value=4e-16 Score=129.57 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=79.7
Q ss_pred CCCHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHhhCCcE
Q psy6940 4 LLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV-----LANIFWRYLNRLSVQGQT 78 (123)
Q Consensus 4 ~~~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~-----~~~~i~~~l~~l~~~g~t 78 (123)
|+..+++ ...++..+.+.+|.+||+||+||+++|+++..+|+++|+| ||++||+. .++.+.++++.+++.|.|
T Consensus 332 g~~~~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~t 409 (525)
T 1tf7_A 332 GMDFEEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEIT 409 (525)
T ss_dssp SCCHHHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCHHHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCE
Confidence 4444443 3456667788899999999999999999999999999999 99999999 999999999998888999
Q ss_pred EEEEeCCH----------HHHHh-hccee
Q psy6940 79 IIITTHYI----------EEARQ-ANTVF 96 (123)
Q Consensus 79 viivtH~~----------~~~~~-~d~v~ 96 (123)
||+++|+. ..+.. ||+++
T Consensus 410 vilvsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 410 GLFTNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp EEEEEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred EEEEECcccccCcccccCcccceeeeEEE
Confidence 99999998 67777 99988
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.58 E-value=4.4e-17 Score=121.81 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 30 Gqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
||||||+|||||+.+|+++||||||+| .+..+.+.|+++ ++|.||| +|||++++..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 999999999999999999999999999 778899999888 5689999 9999988765
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.44 E-value=1.3e-15 Score=124.52 Aligned_cols=96 Identities=7% Similarity=0.047 Sum_probs=78.9
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHH--HHHHHHHHHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGG--QVRRVSIAVTLLH----------SPSLVILDEPTSGLDPVLANIFWRYLNRLS 73 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgG--qrqrv~iaraL~~----------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~ 73 (123)
+.+++++++++.+.. ..+. +|+| |+||+.||++++. +|+++++||||+|||+..+.++.+.++++.
T Consensus 136 ~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp CHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 467889999877653 3333 9999 9999999999999 999999999999999999999999998874
Q ss_pred -----hC----CcEEEEEeCCHHH--HHh-hcceeeeccccc
Q psy6940 74 -----VQ----GQTIIITTHYIEE--ARQ-ANTVFGGFFAPK 103 (123)
Q Consensus 74 -----~~----g~tviivtH~~~~--~~~-~d~v~~~~~~~~ 103 (123)
+. ..+|++++|+++. +.. ||++...+-.|+
T Consensus 214 ~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 214 VNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 22 3678899999987 777 888875444443
No 84
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.39 E-value=1.5e-13 Score=121.60 Aligned_cols=84 Identities=20% Similarity=0.065 Sum_probs=63.1
Q ss_pred HHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHhh-CCcEEEEEeCCHH
Q psy6940 10 ILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW-RYLNRLSV-QGQTIIITTHYIE 87 (123)
Q Consensus 10 ~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~-~~l~~l~~-~g~tviivtH~~~ 87 (123)
++.+++..+......+++|+||+|++.++++ +.+|+++||||||+|+|+.....+. .++..+.+ .|.|||++||+++
T Consensus 719 i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 719 IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 3445555555667788999999999999998 8999999999999999999988886 77777765 5999999999987
Q ss_pred HHHhhcc
Q psy6940 88 EARQANT 94 (123)
Q Consensus 88 ~~~~~d~ 94 (123)
.+..||+
T Consensus 798 l~~l~~~ 804 (918)
T 3thx_B 798 VCELEKN 804 (918)
T ss_dssp GGGHHHH
T ss_pred HHHHHhh
Confidence 7654554
No 85
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.30 E-value=6.5e-12 Score=111.30 Aligned_cols=76 Identities=20% Similarity=0.182 Sum_probs=60.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhhC-CcEEEEEeCCHHHHHhhccee
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTL--LHSPSLVILDEPTSGLDPVLANIF-WRYLNRLSVQ-GQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL--~~~p~lliLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tviivtH~~~~~~~~d~v~ 96 (123)
+.....+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ +.++..+.++ |.++|++||+.+....||++.
T Consensus 716 d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~ 795 (934)
T 3thx_A 716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP 795 (934)
T ss_dssp -------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCT
T ss_pred hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccc
Confidence 455677899999999999988 999999999999999999988887 6777777764 999999999977665588765
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.28 E-value=2.3e-14 Score=105.24 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=62.8
Q ss_pred cCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHhh-CCcEEEEEeCCHHH
Q psy6940 14 TRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGL----DPVLANIFWRYLNRLSV-QGQTIIITTHYIEE 88 (123)
Q Consensus 14 ~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gL----D~~~~~~i~~~l~~l~~-~g~tviivtH~~~~ 88 (123)
+++..++++++..|| +++.+|++++|||||+++ |+..++++.+.+++++. .|.|+|++|||+++
T Consensus 122 ~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~ 190 (207)
T 1znw_A 122 AGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLES 190 (207)
T ss_dssp HHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHH
T ss_pred HHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHH
Confidence 344456677777777 899999999999999998 78899999999999875 48999999999999
Q ss_pred HHh-hcceee
Q psy6940 89 ARQ-ANTVFG 97 (123)
Q Consensus 89 ~~~-~d~v~~ 97 (123)
+.. ||+++.
T Consensus 191 ~~~~~d~i~~ 200 (207)
T 1znw_A 191 ACAELVSLLV 200 (207)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 988 999874
No 87
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.27 E-value=5.2e-12 Score=96.40 Aligned_cols=78 Identities=14% Similarity=0.073 Sum_probs=61.1
Q ss_pred HHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HHHHHHHHHHHhh-CCcEEEEE
Q psy6940 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTS--GLDPVL---ANIFWRYLNRLSV-QGQTIIIT 82 (123)
Q Consensus 9 e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~--gLD~~~---~~~i~~~l~~l~~-~g~tviiv 82 (123)
++++.+.+.+..++++..||+|++|++ ++++.+|+++|+||||+ ++|+.. ...+++.|.++.+ .|+|||++
T Consensus 101 ~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i 177 (279)
T 1nlf_A 101 AVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFL 177 (279)
T ss_dssp HHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_pred hccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 445666666777889999999997765 68888999999999999 999744 3778888888864 49999999
Q ss_pred eCCHHHH
Q psy6940 83 THYIEEA 89 (123)
Q Consensus 83 tH~~~~~ 89 (123)
+|+....
T Consensus 178 ~H~~~~~ 184 (279)
T 1nlf_A 178 HHASKGA 184 (279)
T ss_dssp EEC----
T ss_pred ecCCCcc
Confidence 9998765
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.25 E-value=8.5e-12 Score=111.33 Aligned_cols=84 Identities=17% Similarity=0.058 Sum_probs=64.4
Q ss_pred HHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHhhC-CcEEEEEeCCHHHH
Q psy6940 12 TRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLA-NIFWRYLNRLSVQ-GQTIIITTHYIEEA 89 (123)
Q Consensus 12 ~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~-~~i~~~l~~l~~~-g~tviivtH~~~~~ 89 (123)
.+++..+......+++|++++ ++++|++++.+|+++|||||++|+|+... ..+++++..+.++ |.++|++||+++.+
T Consensus 837 ~rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 837 TRLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp EECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHH
T ss_pred HHcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 344444444455667788775 59999999999999999999999999875 5578899998876 99999999999999
Q ss_pred Hh-hccee
Q psy6940 90 RQ-ANTVF 96 (123)
Q Consensus 90 ~~-~d~v~ 96 (123)
.. ||++.
T Consensus 916 ~~~~d~~~ 923 (1022)
T 2o8b_B 916 EDYSQNVA 923 (1022)
T ss_dssp HHTSSCSS
T ss_pred HHhCCcce
Confidence 87 88765
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.22 E-value=2.5e-11 Score=93.08 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=49.8
Q ss_pred CCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 23 LPNWTVGGQ-VRRVSIAVTLLHSPSLVILDEPTS---G---LDP-VLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 23 ~~~~LSgGq-rqrv~iaraL~~~p~lliLDEPt~---g---LD~-~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.+..+|.++ +|++. ++++..+|+++|+||||+ + +|+ .....+.+.|++++++ |+|||++||+.
T Consensus 126 ~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 126 SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 446789888 66666 999999999999999999 5 455 6667888999998765 99999999995
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.14 E-value=7.6e-11 Score=85.57 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHhh-CCcEEEEEeCCH--------HHHHh-
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPS--LVILDEPTSGL--DPVLANIFWRYLNRLSV-QGQTIIITTHYI--------EEARQ- 91 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~--lliLDEPt~gL--D~~~~~~i~~~l~~l~~-~g~tviivtH~~--------~~~~~- 91 (123)
..|.++.++...+.+...+|+ ++++||||+++ |+.....+++.++++++ .|.|||+++|+. ..+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 348899888888877788999 99999999777 99888899999998864 599999999999 44777
Q ss_pred hccee
Q psy6940 92 ANTVF 96 (123)
Q Consensus 92 ~d~v~ 96 (123)
||+++
T Consensus 183 ~d~vi 187 (235)
T 2w0m_A 183 ADGII 187 (235)
T ss_dssp CSEEE
T ss_pred eeEEE
Confidence 99987
No 91
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.13 E-value=1.7e-11 Score=97.02 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceee
Q psy6940 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97 (123)
Q Consensus 29 gGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~ 97 (123)
|||+||++||+||..+|+++++||||+. ++.+.++.+...+.|+|+++|+.+....||+++.
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~ 286 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLAN 286 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHH
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhhee
Confidence 8999999999999999999999999982 3566777766445589999999984444999873
No 92
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.09 E-value=5.4e-11 Score=87.67 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH---------Hh-h
Q psy6940 28 VGGQVRRVSIAVTLLHSPSLVILDEPTSGLD-----PVLANIFWRYLNRLSVQGQTIIITTHYIEEA---------RQ-A 92 (123)
Q Consensus 28 SgGqrqrv~iaraL~~~p~lliLDEPt~gLD-----~~~~~~i~~~l~~l~~~g~tviivtH~~~~~---------~~-~ 92 (123)
+.++.........-..+|+++++||||+++| +..++.+.++++.+++.|+|||++||+++++ .. |
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEe
Confidence 3444444444444468999999999999997 6666678999988887799999999999998 55 7
Q ss_pred -ccee
Q psy6940 93 -NTVF 96 (123)
Q Consensus 93 -d~v~ 96 (123)
|+++
T Consensus 199 aD~vi 203 (251)
T 2ehv_A 199 ARGVI 203 (251)
T ss_dssp CSEEE
T ss_pred eeEEE
Confidence 9988
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.99 E-value=4.2e-10 Score=97.96 Aligned_cols=68 Identities=29% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHhhCCcEEEEEeCCHHHHHhh
Q psy6940 22 LLPNWTVGGQVRRVSIAVTL--LHSPSLVILDEP---TSGLDPVLA-NIFWRYLNRLSVQGQTIIITTHYIEEARQA 92 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL--~~~p~lliLDEP---t~gLD~~~~-~~i~~~l~~l~~~g~tviivtH~~~~~~~~ 92 (123)
.....+|+|+++++.+++++ +.+|+++||||| |+++|+... ..+.+.+.+ .|.|+|++||+.+....+
T Consensus 631 ~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 631 DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp ----CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 34456899999999999999 999999999999 999999875 457777655 588999999999876544
No 94
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.95 E-value=2.7e-11 Score=94.94 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=49.9
Q ss_pred HcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 13 RTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPS--LVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 13 ~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~--lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
.+|+.+..++++.+|| |||++||||++.+|+ ++++| ||+|+|+..+ ++++.+ .|.|+|++||
T Consensus 191 t~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiTh 255 (302)
T 3b9q_A 191 TSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTK 255 (302)
T ss_dssp CCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEEC
T ss_pred cCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeC
Confidence 3444455566777888 899999999999999 99999 9999999754 234443 4899999999
No 95
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.93 E-value=8.8e-10 Score=96.31 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=54.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHhhC-CcEEEEEeCCHHHHHhhcce
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF-WRYLNRLSVQ-GQTIIITTHYIEEARQANTV 95 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tviivtH~~~~~~~~d~v 95 (123)
....++|+++++ ++.+...+.+|+++|||||++|+|+.....+ +.++..+.++ |.++|++||+.+....||++
T Consensus 665 ~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~ 739 (800)
T 1wb9_A 665 SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKM 739 (800)
T ss_dssp -----CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHS
T ss_pred hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhh
Confidence 344567777754 4555566899999999999999999877765 7788888774 99999999999765447654
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.93 E-value=4.3e-11 Score=99.31 Aligned_cols=64 Identities=27% Similarity=0.294 Sum_probs=54.3
Q ss_pred HHHHHHHHHh-cCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH---------Hh-hccee
Q psy6940 33 RRVSIAVTLL-HSPSLVILDEPTS-----GLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA---------RQ-ANTVF 96 (123)
Q Consensus 33 qrv~iaraL~-~~p~lliLDEPt~-----gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~---------~~-~d~v~ 96 (123)
+.-.+..+|. .+|+++++||||+ ++|+..++.++++++++++.|+|||++||+++++ .. ||+++
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 4555566663 7899999999997 4699999999999999987899999999999884 56 99998
No 97
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.92 E-value=2.3e-09 Score=77.54 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=55.2
Q ss_pred CCCCCHHH--HHHHHHHHHHhcC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHhhC-CcEEEEEeCCHH----
Q psy6940 24 PNWTVGGQ--VRRVSIAVTLLHS-PSLVILDEPTSGLDPVL--------ANIFWRYLNRLSVQ-GQTIIITTHYIE---- 87 (123)
Q Consensus 24 ~~~LSgGq--rqrv~iaraL~~~-p~lliLDEPt~gLD~~~--------~~~i~~~l~~l~~~-g~tviivtH~~~---- 87 (123)
+.+.++++ +++++.+++++.+ |+++|+|||++.+|+.. ...+.+.++++.++ |.|||+++|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~ 161 (220)
T 2cvh_A 82 LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRT 161 (220)
T ss_dssp EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTT
T ss_pred EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC
Confidence 34455553 5688888899886 99999999999999732 24455667777654 899999999765
Q ss_pred ---------HHHh-hccee
Q psy6940 88 ---------EARQ-ANTVF 96 (123)
Q Consensus 88 ---------~~~~-~d~v~ 96 (123)
.+.. ||.++
T Consensus 162 ~~~~p~~~~~~~~~~d~vi 180 (220)
T 2cvh_A 162 EMTKPVAEQTLGYRCKDIL 180 (220)
T ss_dssp SSCCSCCCHHHHHTSSEEE
T ss_pred CccccCCCcceeecCcEEE
Confidence 4566 88887
No 98
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.91 E-value=2.5e-11 Score=93.59 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=53.3
Q ss_pred chhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 17 FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 17 ~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
..+.+..+.+||||||||+++|||++. ++++|||+.|||+.. .+.++.+.+. .+||++.|..+.+
T Consensus 89 ~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 89 EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGS
T ss_pred HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccC
Confidence 456677888999999999999999886 999999999999987 3455555555 7889888877543
No 99
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.86 E-value=6.9e-12 Score=93.22 Aligned_cols=73 Identities=11% Similarity=0.026 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHH-----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-------CCcEEEEEeCCHHHHHh-
Q psy6940 25 NWTVGGQVRRVSI-----AVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-------QGQTIIITTHYIEEARQ- 91 (123)
Q Consensus 25 ~~LSgGqrqrv~i-----araL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-------~g~tviivtH~~~~~~~- 91 (123)
.++||||+||+++ +++++.+|++++|||||+++|......+.+.+.+... .+.+.|+++|+++++..
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~ 200 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQ 200 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHH
Confidence 5789999999999 8999999999999999999999888888887766532 45788999999998877
Q ss_pred hcceee
Q psy6940 92 ANTVFG 97 (123)
Q Consensus 92 ~d~v~~ 97 (123)
+++++.
T Consensus 201 ~~~ii~ 206 (218)
T 1z6g_A 201 LKNYLL 206 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887773
No 100
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.85 E-value=1.1e-10 Score=93.84 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=50.3
Q ss_pred HcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 13 RTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPS--LVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 13 ~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~--lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
.+|+.+..++++.+|| |||++|||+++.+|+ +++|| ||+|+|+..+. +++.+ .|.|+|++||.
T Consensus 248 t~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 248 TSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKL 313 (359)
T ss_dssp CCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESC
T ss_pred hcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecC
Confidence 3444455566777888 899999999999999 99999 99999997642 34443 48999999993
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.77 E-value=7.9e-09 Score=79.18 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
|++|+++|..+|+++++|||| |+.....+ ++. ...|.+|++++|+.+....||+++
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~-~~~g~~vl~t~H~~~~~~~~dri~ 143 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-AETGHLVFGTLHTNTAIDTIHRIV 143 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHH-HHTTCEEEEEECCSSHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHH-HccCCEEEEEeCcchHHHHHHHHh
Confidence 899999999999999999999 98876544 333 346999999999987443388764
No 102
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.75 E-value=5.1e-09 Score=76.08 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=47.9
Q ss_pred CCHHH-HHHHHHHHHHhc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 27 TVGGQ-VRRVSIAVTLLH-------SPSLVILDEPTSGLDPV-------L-----ANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 27 LSgGq-rqrv~iaraL~~-------~p~lliLDEPt~gLD~~-------~-----~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+.++ ++.+..+.+++. +|+++++|||++++|+. . ...+++.+.++.++ |.|||++||.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 34444 344666666665 99999999999999984 1 23577777777654 9999999995
Q ss_pred HHH----HHh-hccee
Q psy6940 86 IEE----ARQ-ANTVF 96 (123)
Q Consensus 86 ~~~----~~~-~d~v~ 96 (123)
.+. +.. ||+++
T Consensus 180 ~~~~g~~~~~~~d~~l 195 (231)
T 4a74_A 180 QANGGHILAHSATLRV 195 (231)
T ss_dssp C---------CCSEEE
T ss_pred ccCcchhhHhhceEEE
Confidence 554 777 88887
No 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.71 E-value=8e-11 Score=92.59 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=56.6
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+.++.++ .+..+.++..||+||+||+++|++++.+|+++|+|||+..+|+.. ..+.+.--.+|+++|+.+
T Consensus 159 ~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~ 229 (312)
T 3aez_A 159 MRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIE 229 (312)
T ss_dssp HHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHH
T ss_pred HHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHH
Confidence 34555555 444556788999999999999999999999999999999998521 112222124577788887
Q ss_pred HHHh--hccee
Q psy6940 88 EARQ--ANTVF 96 (123)
Q Consensus 88 ~~~~--~d~v~ 96 (123)
.... .+|.+
T Consensus 230 ~~~~R~i~R~~ 240 (312)
T 3aez_A 230 DIEQWYVSRFL 240 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 6532 55543
No 104
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.64 E-value=1.3e-10 Score=91.69 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhcceeeeccccc
Q psy6940 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAPK 103 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~~~~~~~~ 103 (123)
+..|||||||| |||++.+|++|| |++||+.....+.. +||++..+..||++ .+-.|+
T Consensus 198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~~~~aD~i--vl~~G~ 254 (305)
T 2v9p_A 198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQTFRFEQPC--TDESGE 254 (305)
T ss_dssp TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEEEECCCCC--CCC---
T ss_pred ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHHHHhCCEE--EEeCCE
Confidence 78999999999 999999999999 99999998887752 28988876569998 567888
Q ss_pred ccccCCchhh
Q psy6940 104 LHLSLNESEL 113 (123)
Q Consensus 104 ~~~~~~~~~~ 113 (123)
.....+..++
T Consensus 255 iv~~g~~~el 264 (305)
T 2v9p_A 255 QPFNITDADW 264 (305)
T ss_dssp CCCCCCHHHH
T ss_pred EEEeCCHHHH
Confidence 8877777776
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.62 E-value=3.1e-08 Score=79.21 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 36 SIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
+|++||..+|+++++|||+ |+.. ++.+.+.+..|.+|++++|+.+.+..+||++
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 9999999999999999999 6554 3444445567999999999999885588887
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.62 E-value=2.1e-08 Score=79.57 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHh-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHhh-CCcEEEEEeCCHH
Q psy6940 28 VGGQVRRVSIAVTLL-------HSPSLVILDEPTSGLDPVL------------ANIFWRYLNRLSV-QGQTIIITTHYIE 87 (123)
Q Consensus 28 SgGqrqrv~iaraL~-------~~p~lliLDEPt~gLD~~~------------~~~i~~~l~~l~~-~g~tviivtH~~~ 87 (123)
|.+++|++.++++++ .+|+++|+||||+++|+.. ..+++..|.++.+ .|.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 678999999999999 6899999999999999852 3456666666654 4899999999876
Q ss_pred HHH
Q psy6940 88 EAR 90 (123)
Q Consensus 88 ~~~ 90 (123)
...
T Consensus 288 ~~~ 290 (349)
T 1pzn_A 288 RPD 290 (349)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.53 E-value=3.5e-08 Score=70.76 Aligned_cols=58 Identities=10% Similarity=-0.025 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHH-HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcE
Q psy6940 21 KLLPNWTVGGQVRR-VSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT 78 (123)
Q Consensus 21 ~~~~~~LSgGqrqr-v~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~t 78 (123)
..++..+|+||+|+ +..+++++.+|+.+++||||+++|+.+...+++.|.++..+|.|
T Consensus 144 ~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 144 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 55677899999999 89999999999999999999999999999999999887765544
No 108
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.49 E-value=3.6e-09 Score=84.38 Aligned_cols=63 Identities=17% Similarity=0.291 Sum_probs=54.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh--CCc-----EEEEEeCCHHHHHh-hc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV--QGQ-----TIIITTHYIEEARQ-AN 93 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~--~g~-----tviivtH~~~~~~~-~d 93 (123)
..+..||+|| ||+++| +.+|++ |+|+||.....+.+++.++.+ .|. ||+++|||++ .. ||
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d 234 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD 234 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence 5688899999 899999 688887 999999999999999998864 487 9999999998 44 88
Q ss_pred cee
Q psy6940 94 TVF 96 (123)
Q Consensus 94 ~v~ 96 (123)
+++
T Consensus 235 ~v~ 237 (347)
T 2obl_A 235 EVR 237 (347)
T ss_dssp HHH
T ss_pred heE
Confidence 876
No 109
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.45 E-value=2.1e-09 Score=83.74 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=49.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHH
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTS-GLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~-gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~ 87 (123)
.+.++.++|||+|||+.+||+++ ++++||||+ |||+... +.++++..+ +.++|+++||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 34678899999999999988885 999999998 5999873 556666544 889999999973
No 110
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.44 E-value=3.1e-11 Score=87.83 Aligned_cols=78 Identities=14% Similarity=-0.035 Sum_probs=64.9
Q ss_pred HHHHHcCcchhcCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHH-hhCC
Q psy6940 9 EILTRTRDFALRKLLPNWTVGGQ----VRRVSIAVTLLHSPSLVILDEPTSG-------LDPVLANIFWRYLNRL-SVQG 76 (123)
Q Consensus 9 e~l~~~~l~~~~~~~~~~LSgGq----rqrv~iaraL~~~p~lliLDEPt~g-------LD~~~~~~i~~~l~~l-~~~g 76 (123)
++++.+++.+..+.++.++|+|+ +||++++++++.+|+++++||||++ ||+.....+.+.+.+. .+.|
T Consensus 72 ~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g 151 (211)
T 3asz_A 72 EHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERG 151 (211)
T ss_dssp HHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhC
Confidence 45556655556667888999996 4688999999999999999999999 9999988899888775 4568
Q ss_pred cEEEEEeCCH
Q psy6940 77 QTIIITTHYI 86 (123)
Q Consensus 77 ~tviivtH~~ 86 (123)
.|++.++|+.
T Consensus 152 ~t~~~~~~~~ 161 (211)
T 3asz_A 152 RSLEGVVAQY 161 (211)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999999975
No 111
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.40 E-value=8.3e-07 Score=62.85 Aligned_cols=47 Identities=19% Similarity=0.182 Sum_probs=41.3
Q ss_pred HhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 41 LLHSPSLVILDEPTS-GLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 41 L~~~p~lliLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+.+|+++++|||++ ++|+..+..+.+++.+..++|+++|++||...
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 356999999999985 99999999999999888778999999999663
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.40 E-value=1.7e-08 Score=74.07 Aligned_cols=66 Identities=9% Similarity=-0.004 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHhhCCcEEEE----EeCCH--HHH
Q psy6940 22 LLPNWTVGGQVRRV-SIAV---TLLHSPSLVILDE--PTSGLDPVLANIFWRYLNRLSVQGQTIII----TTHYI--EEA 89 (123)
Q Consensus 22 ~~~~~LSgGqrqrv-~iar---aL~~~p~lliLDE--Pt~gLD~~~~~~i~~~l~~l~~~g~tvii----vtH~~--~~~ 89 (123)
++...+|+|||+++ ++.+ |++.+|+++|+|| |+..+|+...+.+.+++. ...++|+ ++|+. .++
T Consensus 79 ~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~~~ilgti~vsh~~~~~~v 154 (189)
T 2i3b_A 79 QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPGTIILGTIPVPKGKPLALV 154 (189)
T ss_dssp SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSSCCEEEECCCCCSSCCTTH
T ss_pred eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCCcEEEEEeecCCCCchHHH
Confidence 34456899999888 4444 5789999999999 899999876665555554 3444453 34976 444
Q ss_pred Hh
Q psy6940 90 RQ 91 (123)
Q Consensus 90 ~~ 91 (123)
.+
T Consensus 155 d~ 156 (189)
T 2i3b_A 155 EE 156 (189)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 113
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.30 E-value=3.2e-08 Score=81.11 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh---C-Cc-----EEEEEeCCHHHHHhhcc
Q psy6940 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV---Q-GQ-----TIIITTHYIEEARQANT 94 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~---~-g~-----tviivtH~~~~~~~~d~ 94 (123)
+..||+|| |||++| +.+|++ |+|+|+.....+.+++.++.+ + |. ||+++|||++ ...||+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~ 324 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADS 324 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhce
Confidence 56789999 999999 889988 999999999999999998865 3 74 9999999997 222777
Q ss_pred ee
Q psy6940 95 VF 96 (123)
Q Consensus 95 v~ 96 (123)
++
T Consensus 325 v~ 326 (438)
T 2dpy_A 325 AR 326 (438)
T ss_dssp HH
T ss_pred EE
Confidence 66
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.23 E-value=3.4e-08 Score=73.89 Aligned_cols=63 Identities=6% Similarity=-0.089 Sum_probs=49.1
Q ss_pred cchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 16 DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 16 l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+..+.++..||+||+||+++ ++++.+|+++|+|||....++. +.++ .+.+|+++||+...+
T Consensus 106 l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 106 IVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSDVRL 168 (245)
T ss_dssp HHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHHHHH
T ss_pred HHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHHHHH
Confidence 3445567888999999999988 5888999999999998888763 2222 378999999974444
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.09 E-value=3.6e-06 Score=59.06 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=37.4
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcE-EEEEeCC
Q psy6940 40 TLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT-IIITTHY 85 (123)
Q Consensus 40 aL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~t-viivtH~ 85 (123)
+++.+|+++++|||++ +++..++.+++++.++.++|++ +|++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4567899999999998 6665588899999988777888 8888884
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.01 E-value=1.2e-05 Score=58.52 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=36.9
Q ss_pred CCHHHHHH-HHHHHHHh--cCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHhhC-CcEEEEEeCCHHH
Q psy6940 27 TVGGQVRR-VSIAVTLL--HSPSLVILDEPTSGLDPV-------L-----ANIFWRYLNRLSVQ-GQTIIITTHYIEE 88 (123)
Q Consensus 27 LSgGqrqr-v~iaraL~--~~p~lliLDEPt~gLD~~-------~-----~~~i~~~l~~l~~~-g~tviivtH~~~~ 88 (123)
.+..+... +.-+..++ .+|+++++|||++.+|+. . ...++..+.++.++ |.|||+++|....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~ 176 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 176 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence 45554332 23233333 589999999999999985 2 23455556666554 9999999996654
No 117
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.99 E-value=8.9e-07 Score=69.24 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHH
Q psy6940 27 TVGGQVRRVSIAVTLLHSPS--LVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~--lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~ 87 (123)
++..++||++||||++.+|+ ++.|| |+++ ..+.+.++++.+. |.|+|++||+..
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 45667899999999999999 55555 4444 4455666666554 899999999854
No 118
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.98 E-value=2.8e-08 Score=70.97 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC-HHHHHh-hcceeeec
Q psy6940 28 VGGQVRRVSIAV------TLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY-IEEARQ-ANTVFGGF 99 (123)
Q Consensus 28 SgGqrqrv~iar------aL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~-~~~~~~-~d~v~~~~ 99 (123)
|+|++|++.++. ++..+|+...+|+ ++|+..... ++.+..+...+.++|.+||. ++++.. ||+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH---
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh---
Confidence 667766776777 7888888777783 899988888 88888776568899999998 999988 99998
Q ss_pred ccccccccCCchhhhh
Q psy6940 100 FAPKLHLSLNESELLV 115 (123)
Q Consensus 100 ~~~~~~~~~~~~~~~~ 115 (123)
-.|+.....+++++.-
T Consensus 169 ~~g~~~~~~~~~~~~~ 184 (189)
T 2bdt_A 169 TNPRFIFCMAGDPLEH 184 (189)
T ss_dssp HCGGGSCC--------
T ss_pred hCCcEEEeecCCchhh
Confidence 7777777777776654
No 119
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=8.4e-06 Score=62.90 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=38.2
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 41 LLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 41 L~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
+..+|+++|+|||++ ||+.....+.+.+.+.. .+.++|++||++..
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH
Confidence 466899999999999 99999999999998754 47899999998754
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.79 E-value=2.2e-05 Score=62.74 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
+.+|+++|..+|+++++|||+ |+.... ..++. ...|.+|+.++|+.+....+|+++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~-~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRA-AETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH-HTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH-HhcCCEEEEEECcchHHHHHHHHH
Confidence 569999999999999999999 775533 33443 345899999999866333377764
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.77 E-value=9.3e-06 Score=68.72 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=40.3
Q ss_pred hcCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHhh--CCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEP------TSGLDPVLANIFWRYLNRLSV--QGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEP------t~gLD~~~~~~i~~~l~~l~~--~g~tviivtH~~~~~ 89 (123)
...|+++++||| |+|||+..+..+.++++++.. .+.++++++|+++.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 457999999999 999999999999999999643 378899999998643
No 122
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.76 E-value=2.7e-06 Score=69.43 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHhcCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 27 TVGGQVRRVSIAVTLLHSPS---LVILDEPT-SGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~---lliLDEPt-~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
++.+++||++|||+++.+|+ ++++|||| .++|+... ++++.+. .+.+||+|.|..+
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 35667788899999999999 99999999 69999773 3444554 3677888777554
No 123
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.74 E-value=1.5e-07 Score=70.17 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=42.4
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHhhC
Q psy6940 18 ALRKLLPNWTVGGQVRRVSIAVTL-LHSPSLVILD----EPTSGLDPVLANIFWRYLNRLSVQ 75 (123)
Q Consensus 18 ~~~~~~~~~LSgGqrqrv~iaraL-~~~p~lliLD----EPt~gLD~~~~~~i~~~l~~l~~~ 75 (123)
.+.++++..+|| |+ +++ +.+|+++++| |||+++|+...+.+.+.+.++.++
T Consensus 144 r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 144 RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 345777888998 55 677 9999999999 999999999988888888776543
No 124
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.63 E-value=5.9e-06 Score=64.40 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
++|+||+||+..+++++.+|+++ ||| ..+.+.+++++ .+.+|+++||+..
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 78999999999888899999987 998 67788888775 5899999999643
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.61 E-value=9.1e-06 Score=64.13 Aligned_cols=62 Identities=11% Similarity=-0.133 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHh-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 24 PNWTVGGQVRRVSIAVTLL-HSPSLVILDE---PT------SGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~-~~p~lliLDE---Pt------~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
+..+|+|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.+.++.+ .|.+|++++|.
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 256 AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 3345677778888888774 6999999999 65 58999999999999988754 38899999975
No 126
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.61 E-value=0.00011 Score=59.72 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 24 PNWTVGGQVRRVSIAVTLL--HSPSLVILDEPTSGLD--------PVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~--~~p~lliLDEPt~gLD--------~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+..+|.++.+ +.++.++ .+|+++++|+|+...+ ......+.+.|+.++++ |++||+++|
T Consensus 293 ~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 293 TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 4578998865 5666665 6899999999987663 23345667777777655 999999999
No 127
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.51 E-value=0.00021 Score=51.88 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=38.5
Q ss_pred cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHH-hhCCcEEEEEeCCHHH--------HHh-hccee
Q psy6940 43 HSPSLVILDEPTSGL--DPVLANIFWRYLNRL-SVQGQTIIITTHYIEE--------ARQ-ANTVF 96 (123)
Q Consensus 43 ~~p~lliLDEPt~gL--D~~~~~~i~~~l~~l-~~~g~tviivtH~~~~--------~~~-~d~v~ 96 (123)
.+|+++++|+|+..+ |+....+++..+.++ ++.|.|||+++|.... +.+ ||.++
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi 192 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGII 192 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEE
Confidence 689999999999877 554444554445554 4569999999998765 345 88777
No 128
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.42 E-value=2.6e-05 Score=63.48 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=46.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HhhCCcEEEEEeC
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNR-LSVQGQTIIITTH 84 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~-l~~~g~tviivtH 84 (123)
+.++.++|+|++|++.++++|+.+|.++++ +.+|+... ...+.+.+ +.+.|.+++++|.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 456788999999999999999999999999 99999766 34444444 3445777776664
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.34 E-value=0.00022 Score=57.69 Aligned_cols=43 Identities=26% Similarity=0.371 Sum_probs=33.9
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 43 HSPSLVILDEPTSGLDPVLA------------NIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~------------~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+|+++++|||++.+|+... ..+++.|++++++ |.|||+++|.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 57999999999999986532 4577778888765 9999999998
No 130
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.31 E-value=2.5e-06 Score=66.22 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~ 60 (123)
.+...+||||+||+.+|++...+|+++|+|||++++|+.
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 455789999999999874333399999999999999984
No 131
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.30 E-value=0.00012 Score=63.53 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=56.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHhhCCcEEEEE-eCCHHHHHh-hc
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTS-GLDPVLANIFWRYLNRLSVQGQTIIIT-THYIEEARQ-AN 93 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tviiv-tH~~~~~~~-~d 93 (123)
..+.-+|.|+.+|..+++.++.+++++|+|||.. ++|......+++.+.....+..+|+++ ||+.+.+.. ++
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 3455678999999999999999999999999996 999877666666665554456677774 999877765 44
No 132
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.21 E-value=0.00055 Score=50.77 Aligned_cols=45 Identities=20% Similarity=0.129 Sum_probs=38.3
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 38 AVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 38 araL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
+..++..++++||| ||+.++..+.+.+. ++.||+++||+++++..
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHHHHHH
Confidence 34556779999999 99999999988765 58999999999998765
No 133
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.02 E-value=6.1e-05 Score=53.14 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=41.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
+.++..+|+|++|++.++|++..+|+++ +|+...+.+++.+..+...+..+|.++
T Consensus 104 ~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 104 ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECC
Confidence 4456789999999999999999999876 688887778777766543333444444
No 134
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.96 E-value=0.0013 Score=54.28 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHh----hCCcEEEEEeCCHHHH
Q psy6940 29 GGQVRRVSIAVTLLHSPSLVILDEP----------TSGLDPVLANIFWRYLNRLS----VQGQTIIITTHYIEEA 89 (123)
Q Consensus 29 gGqrqrv~iaraL~~~p~lliLDEP----------t~gLD~~~~~~i~~~l~~l~----~~g~tviivtH~~~~~ 89 (123)
++++.|..+++|....|.+|++||+ +.|.|+...+.+.+++..+. ..+..||.+||.++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 6788899999999999999999999 34666666666666666553 2478899999998654
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.88 E-value=0.0019 Score=51.03 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----hhCCcEEEEEeCCHH
Q psy6940 33 RRVSIAVTLLHS--PSLVILDEPTSGL----------DP---VLANIFWRYLNRL----SVQGQTIIITTHYIE 87 (123)
Q Consensus 33 qrv~iaraL~~~--p~lliLDEPt~gL----------D~---~~~~~i~~~l~~l----~~~g~tviivtH~~~ 87 (123)
+-+.++++++.+ |+++|+|||++.+ |+ ...+.+.+.++++ ++.|.|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 556788888754 9999999999988 32 1222344555554 344999999999643
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.87 E-value=9.1e-06 Score=58.57 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEE-------EEeCCCCC---CCHHHHHHHHHHHHHHhhCC
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSLV-------ILDEPTSG---LDPVLANIFWRYLNRLSVQG 76 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~ll-------iLDEPt~g---LD~~~~~~i~~~l~~l~~~g 76 (123)
.|||||+||++||||++.+|++. +=|.|..+ +|....+.+.+++.+...+|
T Consensus 103 glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 103 GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHHHHHHhcc
Confidence 49999999999999999999873 22444311 23344567788876665564
No 137
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.0031 Score=49.44 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=51.6
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe--CCHH
Q psy6940 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITT--HYIE 87 (123)
Q Consensus 19 ~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivt--H~~~ 87 (123)
..+.++..+|+|++|++. +.+...++-++++| +|..++|......+++.+..... +.++|++. ||+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 224 LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 445567788999988776 55555777889999 99999999988887777766543 67888888 7763
No 138
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.50 E-value=0.0036 Score=49.62 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHc-----C--cchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q psy6940 2 SLLLRPAEILTRT-----R--DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV 74 (123)
Q Consensus 2 ~~~~~~~e~l~~~-----~--l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~ 74 (123)
|+=++.+++..++ + +..+++ +.||.++++|+..|...+.+++++|.|+|...++ .+...++++.+
T Consensus 81 SlEms~~ql~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~l~~ 152 (338)
T 4a1f_A 81 SLEMSAEQLALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRKLKS 152 (338)
T ss_dssp ESSSCHHHHHHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHHHHH
Confidence 3445566666664 1 222322 5799999999999999999999999999965433 45566666654
Q ss_pred -C-CcEEEEEeC
Q psy6940 75 -Q-GQTIIITTH 84 (123)
Q Consensus 75 -~-g~tviivtH 84 (123)
. |..+|+|-|
T Consensus 153 ~~gg~~lIVIDy 164 (338)
T 4a1f_A 153 QHKELGIAFIDY 164 (338)
T ss_dssp HCTTEEEEEEEE
T ss_pred hcCCCCEEEEec
Confidence 3 688888875
No 139
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.33 E-value=0.012 Score=45.18 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 28 VGGQVRRVSIAVTLLHSPSLVILDEP-TSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 28 SgGqrqrv~iaraL~~~p~lliLDEP-t~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
...+.+|.+++.+...+++++|+||| +.++|......+.+..+.+. ...+++++..
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~-~~~~~lv~~~ 220 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG-PDEVLLVLDA 220 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC-CSEEEEEEEG
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC-CCEEEEEEeC
Confidence 34456788999888899999999999 99999988888888776654 3445555543
No 140
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.16 E-value=0.0092 Score=49.50 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=51.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHh--c---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLL--H---------------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~--~---------------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
++..+..||||+|-.-+|.+.+ . .-.+++|||. +-+|....+..+++++++ |.=+|+++
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiat 449 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAA 449 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEE
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEEC
Confidence 4457889999999654444332 2 2268999999 999999999999998864 56678888
Q ss_pred CCHHHHHh-hccee
Q psy6940 84 HYIEEARQ-ANTVF 96 (123)
Q Consensus 84 H~~~~~~~-~d~v~ 96 (123)
-+ .+.. +|.++
T Consensus 450 P~--~i~p~v~~~~ 461 (483)
T 3euj_A 450 PE--NISPERGTTY 461 (483)
T ss_dssp SS--SCCCSSSEEE
T ss_pred cc--hhhhccCceE
Confidence 77 4433 67666
No 141
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.99 E-value=0.00017 Score=60.29 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=40.0
Q ss_pred CCCHHHHHHH----------HHHHHHhcCCC-EEEEeCCCCCCCHHHHHHHHHHHHHH---hhC-CcEEEEEeCCHH
Q psy6940 26 WTVGGQVRRV----------SIAVTLLHSPS-LVILDEPTSGLDPVLANIFWRYLNRL---SVQ-GQTIIITTHYIE 87 (123)
Q Consensus 26 ~LSgGqrqrv----------~iaraL~~~p~-lliLDEPt~gLD~~~~~~i~~~l~~l---~~~-g~tviivtH~~~ 87 (123)
.+|+||+|+. ++++++...|. ++++||++.-++... ..+.+.+.++ .+. |.++|++||++.
T Consensus 268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 4566665542 24555677887 899999998887432 3344444444 233 889999999986
No 142
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.94 E-value=0.0039 Score=48.93 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHH---hc--CCCEEEEeCCC
Q psy6940 26 WTVGGQVRRVSIAVTL---LH--SPSLVILDEPT 54 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL---~~--~p~lliLDEPt 54 (123)
.+|+|++||.++++++ .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 66 89999999996
No 143
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.0065 Score=46.89 Aligned_cols=60 Identities=10% Similarity=0.084 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---hCCcEEEE-EeCCHHHHHh-hccee
Q psy6940 33 RRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS---VQGQTIII-TTHYIEEARQ-ANTVF 96 (123)
Q Consensus 33 qrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~---~~g~tvii-vtH~~~~~~~-~d~v~ 96 (123)
-+.++++ +.+|+++|+| |+|+|+.....+.++..-+. ..+.++++ ++|....+.+ ++++.
T Consensus 173 l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~ 237 (296)
T 2px0_A 173 FQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFS 237 (296)
T ss_dssp HHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTS
T ss_pred HHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHh
Confidence 4555554 4999999999 88999876655554433322 12334444 4899888877 76653
No 144
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.81 E-value=0.0048 Score=50.46 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HhhCCcEEEEEeCCH
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNR-LSVQGQTIIITTHYI 86 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~-l~~~g~tviivtH~~ 86 (123)
.++... +.++++|..+++++++|+|+..|.+.....+.+.+++ +...|.+|+.++.+-
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 455554 7999999999999999999999999999999999986 777899999998754
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.69 E-value=0.0061 Score=47.44 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=27.7
Q ss_pred CCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCC
Q psy6940 25 NWTVGGQVRRV---SIAVTLLHSPSLVILDEPTS 55 (123)
Q Consensus 25 ~~LSgGqrqrv---~iaraL~~~p~lliLDEPt~ 55 (123)
...|+|+.+++ ++++++..+|+++|+|+|..
T Consensus 164 ~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 164 SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 35689999999 89999999999999999975
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.38 E-value=0.026 Score=45.58 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=36.3
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 43 HSPSLVILDEPTSGLDP-VLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~-~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999776653 667788899988877789999999973
No 147
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.72 E-value=0.00022 Score=57.64 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=47.6
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-hhCCcEEEEEeCCHHHHHh-hcceeeecccc
Q psy6940 44 SP--SLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTHYIEEARQ-ANTVFGGFFAP 102 (123)
Q Consensus 44 ~p--~lliLDEPt~gLD~~~~~~i~~~l~~l-~~~g~tviivtH~~~~~~~-~d~v~~~~~~~ 102 (123)
+| ++.++|||+.+.|+...++.++.+.+. ...|.||+ +|....+.. |+++...+-.|
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G 199 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTET 199 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTT
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccC
Confidence 88 999999999999999999999999887 65677764 999999888 99887434444
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.64 E-value=0.022 Score=43.62 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=36.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh---CCcEEEEEeCCHHHHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV---QGQTIIITTHYIEEAR 90 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~---~g~tviivtH~~~~~~ 90 (123)
.+|.++++||+... |+.....+...+.++.. .+.++|+++|+.+...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 45889999999876 88888788777766554 5789999999886443
No 149
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.28 E-value=0.024 Score=39.82 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNR 71 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~ 71 (123)
.+..|++++.+|+++++| |+++|+.+...+++.+.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999988865
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.18 E-value=1.3e-05 Score=66.75 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEE--EeCCHHHHHh-hcc
Q psy6940 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII--TTHYIEEARQ-ANT 94 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvii--vtH~~~~~~~-~d~ 94 (123)
...+|+||+||.+++. + | ++|+||...+.+++.+.++..+|.|+++ +||+++++.. |+.
T Consensus 398 ~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 398 TMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 3457999988877641 1 7 9999998877777777777667889885 9999999876 654
No 151
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.14 E-value=0.029 Score=44.25 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHhhccee
Q psy6940 28 VGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96 (123)
Q Consensus 28 SgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~~d~v~ 96 (123)
+++..++..|+.++..+|+.+++|||.. ..+.+.+..+.....|++.++|.......++|+.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~ 297 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLA 297 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHH
Confidence 3566788999999999999999999986 2456667766544567899999876433388876
No 152
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.11 E-value=0.033 Score=44.40 Aligned_cols=32 Identities=13% Similarity=-0.003 Sum_probs=28.0
Q ss_pred HHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHH
Q psy6940 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTL 41 (123)
Q Consensus 9 e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL 41 (123)
++++.+++..+.+.++.++| ||+||+++|+++
T Consensus 297 e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 297 EFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp GGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 55677788888999999999 999999999875
No 153
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.86 E-value=0.17 Score=37.65 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHhh----CCcEEEEEeCCHH
Q psy6940 28 VGGQVRRVSIAVTLLHSPSLVILDEPTSGLDP----------VLANIFWRYLNRLSV----QGQTIIITTHYIE 87 (123)
Q Consensus 28 SgGqrqrv~iaraL~~~p~lliLDEPt~gLD~----------~~~~~i~~~l~~l~~----~g~tviivtH~~~ 87 (123)
+++++.+..+..+...+|.++++||+.+-.+. .....+...+..... .+..||.+|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46788888888888899999999999765442 233344444444322 2456778888764
No 154
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.21 E-value=0.13 Score=39.62 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcE--EEEEeC
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQT--IIITTH 84 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~t--viivtH 84 (123)
||.++++|+..|...+.++++++.|+|... + ..+.+.++++..+ |.. +|++.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 899999999999999999999999999644 2 3456666666544 667 888876
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.41 E-value=0.0051 Score=47.64 Aligned_cols=56 Identities=11% Similarity=-0.080 Sum_probs=39.5
Q ss_pred cCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHHh
Q psy6940 14 TRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQ 91 (123)
Q Consensus 14 ~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~~ 91 (123)
+++.. ...++..||+|++||+.++ .+||+.....+.+++++..+. + ++|+.+.+..
T Consensus 151 ~~li~-at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ 207 (334)
T 1in4_A 151 FTLVG-ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEM 207 (334)
T ss_dssp CEEEE-EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHH
T ss_pred eEEEE-ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHH
Confidence 33433 5677889999999998654 677777788888888876543 4 3577665544
No 156
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.31 E-value=0.14 Score=40.09 Aligned_cols=49 Identities=12% Similarity=-0.082 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCCH
Q psy6940 31 QVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYI 86 (123)
Q Consensus 31 qrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~~ 86 (123)
+.+.-.+++++..+++++++|.++. . .+.+.++.+.+ .+.|+|++||.-
T Consensus 230 ~~eL~~i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 230 MDEMKKIARVTKPNLVIFVGDALAG-N------AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 3445568999999999999996654 2 44555566654 489999999954
No 157
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.97 E-value=0.1 Score=38.34 Aligned_cols=64 Identities=27% Similarity=0.158 Sum_probs=42.4
Q ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH-HHHh-hccee
Q psy6940 32 VRRVSIAVTLL--HSPSLVILDEPTSG--LDPVLANIFWRYLNRLSVQGQTIIITTHYIE-EARQ-ANTVF 96 (123)
Q Consensus 32 rqrv~iaraL~--~~p~lliLDEPt~g--LD~~~~~~i~~~l~~l~~~g~tviivtH~~~-~~~~-~d~v~ 96 (123)
+..+..++..+ .+.+++||||.+.. ++......+++++.+ +-++..||+++.+.. ++.. ||.|.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VT 175 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVS 175 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCccee
Confidence 44555666666 56899999999652 222333457777764 335788999999753 4444 88876
No 158
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.52 E-value=0.11 Score=36.26 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6940 35 VSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL 72 (123)
Q Consensus 35 v~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l 72 (123)
...|++++.+|++.++| |+++|+.+...+++.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 35588999999999999 9999999999998888654
No 159
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.33 E-value=0.096 Score=40.86 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh
Q psy6940 24 PNWTVGGQVRRVSIAVTLLH------SPSLVILDEPTSGLDPVLANIFWRYLNRLSV 74 (123)
Q Consensus 24 ~~~LSgGqrqrv~iaraL~~------~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~ 74 (123)
...+|+|++|++..+++++. +|+++. +|++|+.+...+++.|.++..
T Consensus 208 ~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 208 GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999987 688876 999999999999999988653
No 160
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.30 E-value=0.5 Score=35.66 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=32.9
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 42 LHSPSLVILDEPTS-GLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..+|++|++||+-. .-+....+.++..+..+...|..+|+++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 35699999999854 334467778888888877777777777763
No 161
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.89 E-value=0.19 Score=38.68 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=36.5
Q ss_pred HHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHhhC-CcEEEEEeCCHH
Q psy6940 32 VRRVSIAVTLL---HSPSLVILDEPTSGLDP--------VL----ANIFWRYLNRLSVQ-GQTIIITTHYIE 87 (123)
Q Consensus 32 rqrv~iaraL~---~~p~lliLDEPt~gLD~--------~~----~~~i~~~l~~l~~~-g~tviivtH~~~ 87 (123)
.+.+..++.++ .+|+++|+|+.++-... .. ..++...|.+++++ |.+||++.|-..
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 35677777777 67999999999865432 11 23344455555544 899999988553
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.80 E-value=8.8e-05 Score=56.50 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSL--VILDEPTSGLDPVLA--------NIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~l--liLDEPt~gLD~~~~--------~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.+|+| ||+++++++..+|++ +|+||+|+.+|...+ +.+.+...+...+|.|.+.+.|.
T Consensus 172 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r 239 (261)
T 2eyu_A 172 PKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAME 239 (261)
T ss_dssp CCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHH
T ss_pred ecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 36778 899999999999999 999999999987632 12333333444568876665553
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.28 E-value=0.00067 Score=48.98 Aligned_cols=29 Identities=10% Similarity=0.061 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHH-HHHhcCCCEEEEeCCC
Q psy6940 26 WTVGGQVRRVSIA-VTLLHSPSLVILDEPT 54 (123)
Q Consensus 26 ~LSgGqrqrv~ia-raL~~~p~lliLDEPt 54 (123)
.+|+||+|+++++ ++++.++.++++|||.
T Consensus 111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred cCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 4689999999887 7788888888888874
No 164
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.17 E-value=0.36 Score=37.52 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=35.4
Q ss_pred HHHHHHHHHh----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHHHHHhhC-CcEEEEEeCCHH
Q psy6940 33 RRVSIAVTLL----HSPSLVILDEPTSGLDPV--------L----ANIFWRYLNRLSVQ-GQTIIITTHYIE 87 (123)
Q Consensus 33 qrv~iaraL~----~~p~lliLDEPt~gLD~~--------~----~~~i~~~l~~l~~~-g~tviivtH~~~ 87 (123)
+.+..++.++ .+++++++|++++-.... . ...+...|.+++++ |.+||+++|...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 4455555555 679999999998765332 1 23444555555554 899999999654
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.19 E-value=0.00012 Score=58.34 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSL--VILDEPTSGLDPVL---A-----NIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~l--liLDEPt~gLD~~~---~-----~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+|+| ||+++++++..+|++ +|+||+|+.+|... . +.+.+...++..+|.|.+.+.|...
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 4778 889999999999999 99999999988641 1 2233333344456888777777654
No 166
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.06 E-value=0.00085 Score=51.09 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=36.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q psy6940 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTS------------GLDPVLANIFWRYL 69 (123)
Q Consensus 20 ~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~------------gLD~~~~~~i~~~l 69 (123)
.++.+.+|||||+||+.+++|+.++|+++ |||+. -.|...+..+++.+
T Consensus 131 ~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 131 VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 34456679999999999999999999975 99863 34666666666544
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.75 E-value=0.19 Score=38.08 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=26.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH---hhCCcEEEEEeCCHHHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRL---SVQGQTIIITTHYIEEA 89 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l---~~~g~tviivtH~~~~~ 89 (123)
.|.++++||+....+......+..+++.+ ...+.++|++||+....
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 38899999997654211112233333333 23367899999988643
No 168
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.07 E-value=1.5 Score=34.46 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---h-hCCcEEEEEeCCH
Q psy6940 33 RRVSIAVTLL--HSPSLVILDEPTSGLDPV-------------LANIFWRYLNRL---S-VQGQTIIITTHYI 86 (123)
Q Consensus 33 qrv~iaraL~--~~p~lliLDEPt~gLD~~-------------~~~~i~~~l~~l---~-~~g~tviivtH~~ 86 (123)
+...+++.++ .+++++|+|.+++-.... ..+.+.+.++++ . +.|.+||+++|-.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 4556666664 679999999998765321 112344444444 3 3489999999854
No 169
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.04 E-value=0.013 Score=42.01 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q psy6940 40 TLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS 73 (123)
Q Consensus 40 aL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~ 73 (123)
+++.+|++.+|||||+++|....+.+.+.+.+..
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 5666777777788889999887778877776653
No 170
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.96 E-value=0.23 Score=34.74 Aligned_cols=49 Identities=8% Similarity=0.196 Sum_probs=26.8
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHhhCCcEEEEEeC-CHHHHH
Q psy6940 42 LHSPSLVILDEPTS-GLDPVLANIFW-RYLNRLSVQGQTIIITTH-YIEEAR 90 (123)
Q Consensus 42 ~~~p~lliLDEPt~-gLD~~~~~~i~-~~l~~l~~~g~tviivtH-~~~~~~ 90 (123)
+.++++|++||+-. .+++.....++ .++......+..+|++|+ +++.+.
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~ 164 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLA 164 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHH
Confidence 35688999999932 23333333344 456554345555666655 565554
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.84 E-value=0.11 Score=43.43 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6940 22 LLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNR 71 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~ 71 (123)
...+.+|+|++|++..++....++.++++||... |++..+..+.+.|.+
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 3346789999999999999999999999999987 899999988888875
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.40 E-value=0.41 Score=33.65 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=29.3
Q ss_pred cCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHhhCCcE-EEEEeC
Q psy6940 43 HSPSLVILDEPTSG-LDPVLANIFWRYLNRLSVQGQT-IIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~g-LD~~~~~~i~~~l~~l~~~g~t-viivtH 84 (123)
.+|.++++||.-.- -+......+.+.+......+.. +|++++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 57899999996542 2233366788888877665655 777776
No 173
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=86.89 E-value=0.37 Score=40.53 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=46.2
Q ss_pred CCCCC-HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 24 PNWTV-GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 24 ~~~LS-gGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
.+.++ .++++...+.+.++.+|..++++.+++++|.... ...++++++... +.||+++||
T Consensus 162 t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 162 VGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp -CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 55554 3456888999999999999999999999998743 466777777555 478888887
No 174
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.09 E-value=0.77 Score=35.83 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=39.2
Q ss_pred cCCCEEEEeCCCCCC---CHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 43 HSPSLVILDEPTSGL---DPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 43 ~~p~lliLDEPt~gL---D~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
..|.++++||-=.-+ ++.....+.+++++.++.|..++++||++..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhh
Confidence 358999999997666 466777788888887777999999999997653
No 175
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.63 E-value=0.83 Score=31.54 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
+|.++++||.-. +++.....+.+.+.+. ..+..+|++|++...
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQK 168 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHh
Confidence 478999999765 7887777777666542 236788888887653
No 176
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.25 E-value=0.49 Score=35.51 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=30.4
Q ss_pred HHHHhcCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 38 AVTLLHSPSLVILDEPTSG-LDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 38 araL~~~p~lliLDEPt~g-LD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..++..+|+++|+|||-.. .+.......++.+......|..|+.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3345578999999998642 3322223345555555567888998888
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.92 E-value=4.4 Score=31.94 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H---------------HHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 33 RRVSIAVTLL--HSPSLVILDEPTSGLD-P---------------VLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 33 qrv~iaraL~--~~p~lliLDEPt~gLD-~---------------~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
+.+.+++.++ .+|+++++|.-++-.. . .....++..|..++++ |.|||++.|-
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 4566677665 5799999998765443 1 1122334445566555 8999999886
No 178
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.58 E-value=0.0082 Score=48.71 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=28.1
Q ss_pred HHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q psy6940 11 LTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVIL 50 (123)
Q Consensus 11 l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliL 50 (123)
+..+++.... .+.+|||||+|| ||++++.+|++..-
T Consensus 280 L~~lgl~~~~--~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 280 LRDMGIEPFL--ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHTCCHHH--HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHcCCcHHH--HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 4445555443 677899999999 99999999998763
No 179
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.94 E-value=1.5 Score=32.83 Aligned_cols=43 Identities=16% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
+++++++|| ...+++.....+.+.+.+.. ....+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS-GVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC-CCceEEEEeCchhh
Confidence 456999999 77889988888888887754 34557777776643
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=82.39 E-value=0.44 Score=37.55 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.2
Q ss_pred CCCCCCCHHHHHHHHHH----HHH-hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q psy6940 22 LLPNWTVGGQVRRVSIA----VTL-LHSPSLVILDEPTSGLDPVLANIFWRYLNRLS 73 (123)
Q Consensus 22 ~~~~~LSgGqrqrv~ia----raL-~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~ 73 (123)
.++..+|+|+++++.++ +++ ..+|++ +|+|++|..+...+++.|.+..
T Consensus 300 NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 300 NKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred ECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 34556788888888877 555 444454 7999999999999999887754
No 181
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.03 E-value=2.7 Score=30.99 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC----------HHHHHh-hccee
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY----------IEEARQ-ANTVF 96 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~----------~~~~~~-~d~v~ 96 (123)
+|+++++||--. +++. +.+.++.+...|.+||++.|+ ...+.. ||.|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~ 147 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKIT 147 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEE
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEe
Confidence 589999999964 5543 444556666669999999992 234444 88887
No 182
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=81.23 E-value=2.7 Score=33.52 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 36 SIAVTLL--HSPSLVILDEPTSGLDP----------VLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 36 ~iaraL~--~~p~lliLDEPt~gLD~----------~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+.++.+. .+|+++++|..+.-..+ .....+...|+.++++ +++||+++|
T Consensus 300 ~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 361 (444)
T 2q6t_A 300 ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQ 361 (444)
T ss_dssp HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3444444 57999999998643322 1223456666676665 899999998
No 183
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=80.65 E-value=0.72 Score=35.28 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=26.6
Q ss_pred hcCCCEEEEeCCC-CCCCHHHHHHHH-HHHHHHhhCCcEEEEEeC-CHHHHH
Q psy6940 42 LHSPSLVILDEPT-SGLDPVLANIFW-RYLNRLSVQGQTIIITTH-YIEEAR 90 (123)
Q Consensus 42 ~~~p~lliLDEPt-~gLD~~~~~~i~-~~l~~l~~~g~tviivtH-~~~~~~ 90 (123)
+.++++|++||.- ..+++..+..++ .++.....+++.+|++|+ .++.+.
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~ 263 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLE 263 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHH
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 4578999999983 234444444344 366554334556777776 555553
No 184
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=80.29 E-value=0.019 Score=47.26 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=38.0
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHH--Hh-hccee
Q psy6940 39 VTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEA--RQ-ANTVF 96 (123)
Q Consensus 39 raL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~--~~-~d~v~ 96 (123)
|||..| +++|+ ||++.+||. +..+.. ++.+. +.++.+++|+++++ .. ++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~---eLt~~~~~~iP~vsa~md~~t~~~la~~ia 83 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTS---ALTRKITLKTPLISSPMDTVTEADMAIAMA 83 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCE---ESSSSCEESSCEEECCCTTTCSHHHHHHHH
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEe---eccCCeeEeceEEEEehhhhhhhhHHHHHH
Confidence 789999 99999 999999994 333322 34333 67899999999887 33 55554
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.04 E-value=7.3 Score=30.65 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=34.7
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC---H----------HHHHHHHHHHHHH---hh-CCcEEEEEeCCH
Q psy6940 33 RRVSIAVTLL--HSPSLVILDEPTSGLD---P----------VLANIFWRYLNRL---SV-QGQTIIITTHYI 86 (123)
Q Consensus 33 qrv~iaraL~--~~p~lliLDEPt~gLD---~----------~~~~~i~~~l~~l---~~-~g~tviivtH~~ 86 (123)
+.+.+++.++ .+++++|+|..++-.. . ...+.+.+.++++ .+ .+.+||++.|-.
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 4566677775 5699999999976431 0 1113455566655 33 489999998854
No 186
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=78.07 E-value=2.1 Score=34.72 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCEEEEeCCC-CC--CCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 35 VSIAVTLLHSPSLVILDEPT-SG--LDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 35 v~iaraL~~~p~lliLDEPt-~g--LD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
-+++.+...+++++|+|+|- .+ .|+....++.++.+........+++.++.
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 34555556799999999997 45 78888888777666554444555555553
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.86 E-value=2.5 Score=30.85 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTS----------GLDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEEA 89 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~----------gLD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~~ 89 (123)
+-.+..+...+|.++++||.-. +-+......+..++..+. . .+..||.+|+..+.+
T Consensus 100 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 3345556667899999999732 125566667777776653 2 256788888876544
No 188
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.64 E-value=12 Score=29.72 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
+.|+..+.+++.-|...+.+.++++.|+|.. +. ..+...++++.. .|..+|++-+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---MEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---HHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---HHHHHHHHHHHHHcCCCEEEEcC
Confidence 5689999999998888888889999998744 33 234555555543 4677777754
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.46 E-value=4.5 Score=30.30 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHhh-CCcEEEEEeCCHHHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTS-------------GLDPVLANIFWRYLNRLSV-QGQTIIITTHYIEEA 89 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~-------------gLD~~~~~~i~~~l~~l~~-~g~tviivtH~~~~~ 89 (123)
+-.+..+....|.++++||.-+ +........++..+..+.. .+..||.+|+..+.+
T Consensus 98 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 98 REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 3445556667899999999632 2223334445555544332 367888999987544
No 190
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=74.92 E-value=14 Score=23.89 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred hcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 42 LHSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 42 ~~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
..+|+.+++| .....+|..+...+.++.+++++.|..++++.-....
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 93 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRV 93 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 4678999999 5689999999999999999998889999998776544
No 191
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.75 E-value=5.4 Score=27.01 Aligned_cols=43 Identities=19% Similarity=0.336 Sum_probs=30.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++.++++||. ..+++.....+.+.+.+.. .+..+|++++...
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence 56889999995 4567777777777776532 3567778887654
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.48 E-value=8.3 Score=29.61 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHh------hCCcEEEEEeCCHHH
Q psy6940 33 RRVSIAVTLLHSPSLVILDEP-------TSGLDPVLANIFWRYLNRLS------VQGQTIIITTHYIEE 88 (123)
Q Consensus 33 qrv~iaraL~~~p~lliLDEP-------t~gLD~~~~~~i~~~l~~l~------~~g~tviivtH~~~~ 88 (123)
.+-.+..+-..+|.+|++||. ..+.+......+.+++..+. ..+..||.+|+..+.
T Consensus 165 ~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 165 VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 344555566678999999998 23333333333333443332 124567778887643
No 193
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=74.35 E-value=5.7 Score=29.82 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=34.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC----------HHHHHh-hccee
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY----------IEEARQ-ANTVF 96 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~----------~~~~~~-~d~v~ 96 (123)
.+.+++++||--.-.+ +.+.++.+...|+.||++.++ ...+.. ||.|.
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vt 147 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVV 147 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEE
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEE
Confidence 7789999999976644 445555555579999999999 223333 88877
No 194
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=74.12 E-value=2.1 Score=33.00 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC-cEEEEEeC
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIITTH 84 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g-~tviivtH 84 (123)
+.+..++++..+++..+.+|+++|+.-..+..|... ....++++.+...| .+|+++|.
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 356788899999999999999888874444445433 34556666665555 46666665
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=74.00 E-value=9 Score=25.25 Aligned_cols=40 Identities=3% Similarity=-0.014 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
++.++++||.- .+++..+..+.+.+.+....+..+|.+|+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 46899999975 57888888888888765434566777765
No 196
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=73.29 E-value=0.14 Score=39.19 Aligned_cols=34 Identities=6% Similarity=-0.252 Sum_probs=29.2
Q ss_pred CHHHHHHHcCcch-hcCCCCCCCCHHHHHHHHHHH
Q psy6940 6 RPAEILTRTRDFA-LRKLLPNWTVGGQVRRVSIAV 39 (123)
Q Consensus 6 ~~~e~l~~~~l~~-~~~~~~~~LSgGqrqrv~iar 39 (123)
...++++.+++.+ +.++++..|||.++|+++|||
T Consensus 266 ~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 266 AVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567889999876 788999999999999999986
No 197
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=73.04 E-value=6 Score=28.20 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH----------HHHHh-hccee
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI----------EEARQ-ANTVF 96 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~----------~~~~~-~d~v~ 96 (123)
+.+++++||--. +|+.. .+.++.+...|+.||++.++. ..+.. ||.|.
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~ 139 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVD 139 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEE
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEE
Confidence 579999999644 66533 455666666799999999854 34444 88886
No 198
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=71.55 E-value=0.2 Score=35.27 Aligned_cols=65 Identities=9% Similarity=0.162 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH--Hh-hccee
Q psy6940 28 VGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA--RQ-ANTVF 96 (123)
Q Consensus 28 SgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~--~~-~d~v~ 96 (123)
+.|+.+|..++.....+|+....+ .+.++|...+.+.+.+... .+.+||+.+|.+.+. .. ||.++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi 128 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRIL 128 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEE
Confidence 578889999998887777543322 3345666666555554432 355888888987665 44 78776
No 199
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=70.63 E-value=3.2 Score=31.31 Aligned_cols=51 Identities=20% Similarity=0.194 Sum_probs=30.8
Q ss_pred HHHHHHHHh---cCCCEEEEeCCCCCCC--------HHH----HHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 34 RVSIAVTLL---HSPSLVILDEPTSGLD--------PVL----ANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 34 rv~iaraL~---~~p~lliLDEPt~gLD--------~~~----~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-+..++.++ .+++++|+|..++-.. ... ..++...|..+.+ .|.+||++.|
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 344455555 4689999999875321 111 2334444555544 4889999887
No 200
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=69.68 E-value=1.1 Score=33.03 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=26.7
Q ss_pred HHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCC
Q psy6940 8 AEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPS 46 (123)
Q Consensus 8 ~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~ 46 (123)
.++-+.+|. .+.++.++.+|||+.|+...+++|+..|+
T Consensus 56 ~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 56 NEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp HHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHH
T ss_pred HHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHH
Confidence 344455665 67889999999999999999999998887
No 201
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=69.28 E-value=3.5 Score=31.16 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHhhC-Cc--EEEEEeCCHHHHHh-hccee
Q psy6940 27 TVGGQVRRVSIAVTLL--HSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQ-GQ--TIIITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 27 LSgGqrqrv~iaraL~--~~p~lliLDEPt~gLD~~~-~~~i~~~l~~l~~~-g~--tviivtH~~~~~~~-~d~v~ 96 (123)
+|.|++ .+++.+. ..|.++++ +.+|... +..+.+.+.++.+. |. .+.+++|+-..+.. +|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 888885 4556665 67889988 7888876 56677778877654 43 56667776655554 55544
No 202
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=68.95 E-value=19 Score=23.49 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=39.2
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 43 HSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 43 ~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
.+|+.+++| .....+|..+...+.++.+++.+.|..++++.-+...
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 96 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVSDRL 96 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCCHHH
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 578999999 5678999999999999999988889999988766544
No 203
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=68.35 E-value=11 Score=31.93 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=32.9
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 41 LLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 41 L~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
-..++-++++| |+.|+++.... +++ .+...+.++|++.|.++..
T Consensus 96 ~~ad~~ilVvD-~~~g~~~qt~~-~~~---~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 96 EAADAALVAVS-AEAGVQVGTER-AWT---VAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHCSEEEEEEE-TTTCSCHHHHH-HHH---HHHHTTCCEEEEEECGGGC
T ss_pred hhcCcEEEEEc-CCcccchhHHH-HHH---HHHHccCCEEEEecCCchh
Confidence 36788999999 99999987763 333 3334578899999988754
No 204
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=68.18 E-value=7.6 Score=24.39 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=36.4
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.+|+.+++| .....+|..+...+.+..+++.+.|.++.++.-
T Consensus 42 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~ 84 (99)
T 3oiz_A 42 EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGM 84 (99)
T ss_dssp SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESH
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 578889988 567899999999999999999888988888763
No 205
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=67.12 E-value=8.3 Score=29.87 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.++++++|-|..|++.... +.+ . .+..++++|.++....+
T Consensus 295 ~fD~Vv~dPPr~g~~~~~~----~~l---~-~~g~ivyvsc~p~t~ar 334 (369)
T 3bt7_A 295 QCETIFVDPPRSGLDSETE----KMV---Q-AYPRILYISCNPETLCK 334 (369)
T ss_dssp CEEEEEECCCTTCCCHHHH----HHH---T-TSSEEEEEESCHHHHHH
T ss_pred CCCEEEECcCccccHHHHH----HHH---h-CCCEEEEEECCHHHHHH
Confidence 5799999999999986433 222 2 46689999999876654
No 206
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=67.01 E-value=19 Score=25.49 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHhh----CCcEEEEEeCCHHHH
Q psy6940 35 VSIAVTLLHSPSLVILDEPTSGL-----------DPVLANIFWRYLNRLSV----QGQTIIITTHYIEEA 89 (123)
Q Consensus 35 v~iaraL~~~p~lliLDEPt~gL-----------D~~~~~~i~~~l~~l~~----~g~tviivtH~~~~~ 89 (123)
-.+..+....|.++++||.-.-. +......+.+++..+.. .+..+|.+|+....+
T Consensus 89 ~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 89 SLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADIL 158 (262)
T ss_dssp HHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGG
T ss_pred HHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhc
Confidence 34555555679999999985421 23333445555554432 255677777766543
No 207
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=65.98 E-value=10 Score=27.87 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=34.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC----------HHHHHh-hccee
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY----------IEEARQ-ANTVF 96 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~----------~~~~~~-~d~v~ 96 (123)
+.+++++||--. +|+.. .+.+..+...|+.||+..++ ...+.. ||.|.
T Consensus 101 ~~dvViIDEaQF-~~~~~----V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vt 159 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----VEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVT 159 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEE
T ss_pred CCCEEEEECccc-CCHHH----HHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEE
Confidence 589999999966 66533 25566666679999999993 334444 88887
No 208
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=65.98 E-value=3.1 Score=34.63 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHh-cCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 31 QVRRVSIAVTLL-HSP-SLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 31 qrqrv~iaraL~-~~p-~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
.+|++.+++++. ..| .+++...|++|.|.. +.++.+++ -|.|.+++||
T Consensus 397 L~kiv~iar~l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 397 LKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHHhccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 356788888663 456 355555588886543 23444443 3889999999
No 209
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=64.87 E-value=6.1 Score=29.67 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=29.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+++++++||. -.++......+.+.+.+. ..+..+|++|++..
T Consensus 118 ~~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGG
T ss_pred CCeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 35789999995 447777777777666542 23567888888664
No 210
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=64.71 E-value=17 Score=23.33 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=39.4
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 43 HSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 43 ~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
.+|+.+++| .....+|..+...+.+..+++++ |..++++.-+....
T Consensus 44 ~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~l~l~~~~~~v~ 90 (118)
T 3ny7_A 44 EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCELRVCNVEFQPL 90 (118)
T ss_dssp TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCEEEEECCCHHHH
T ss_pred CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCEEEEecCCHHHH
Confidence 678999999 56889999999999999999988 99999987766543
No 211
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=64.45 E-value=6.7 Score=25.59 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=37.3
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 44 SPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 44 ~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+++.+++| .-.+.+|..+...+.++.+++.+.|..++++.-...
T Consensus 47 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 91 (130)
T 2kln_A 47 QVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQD 91 (130)
T ss_dssp CCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSH
T ss_pred CceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57899999 668899999999999999998888988888876544
No 212
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=64.31 E-value=27 Score=22.81 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=38.7
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 43 HSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 43 ~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
.+++.+++| .....+|..+...+.++.+++.+.|..+.++.-+...
T Consensus 62 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 108 (143)
T 3llo_A 62 ENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQV 108 (143)
T ss_dssp -CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHH
T ss_pred CCceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 367899999 5678999999999999999998889999988766544
No 213
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=63.23 E-value=15 Score=26.17 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHhhCCcEEEEE-eCCHHH
Q psy6940 28 VGGQVRRVSIAVTLLHSPSLVILDEPTS-GLDPVLANIFWRYLNRLSVQGQTIIIT-THYIEE 88 (123)
Q Consensus 28 SgGqrqrv~iaraL~~~p~lliLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tviiv-tH~~~~ 88 (123)
+.|.-.+. ....+.+.+++|+||.-. ++|........+.+.....+-.+++++ |.+.+.
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 34554444 334578999999999965 677766644444443333233344444 344333
No 214
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=62.67 E-value=5.5 Score=27.88 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+++++++||--. +++. +.+.+..+.++|..|+++.++.
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESB
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeecc
Confidence 678999999743 4442 4455666666688999988844
No 215
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=61.79 E-value=25 Score=21.64 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=25.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
-.+|+++|+|-...+.|. ..+.+.+++.. .+..||++|..
T Consensus 44 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 83 (134)
T 3f6c_A 44 TLKPDIVIIDVDIPGVNG---IQVLETLRKRQ-YSGIIIIVSAK 83 (134)
T ss_dssp HHCCSEEEEETTCSSSCH---HHHHHHHHHTT-CCSEEEEEECC
T ss_pred hcCCCEEEEecCCCCCCh---HHHHHHHHhcC-CCCeEEEEeCC
Confidence 368999999998887775 23445555432 24556655543
No 216
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=61.27 E-value=11 Score=30.18 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcE--EEEEeC
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQT--IIITTH 84 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~t--viivtH 84 (123)
|+..+.+++.-|...+.+.+++|.|+|. +++.. +...++++.. .|.. +|++-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~---i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNY---IWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHH---HHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHH---HHHHHHHHHHHhCCCCeEEEEec
Confidence 7888888988888878888999999874 55533 4445555543 3666 777754
No 217
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=61.18 E-value=22 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=33.2
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 33 RRVSIAVTLL--HSPSLVILDEPTSGL-------DP-VLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 33 qrv~iaraL~--~~p~lliLDEPt~gL-------D~-~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
+.+..++.+. .+|+++|+|=-+ .+ +. .....+...|+.++++ |++||+++|--
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~ 404 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 404 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 3444455553 479999999543 22 11 2233466666676655 99999999843
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=59.86 E-value=13 Score=27.14 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=26.6
Q ss_pred HHHHHHhcCC-CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6940 36 SIAVTLLHSP-SLVILDEPTSGLDPVLANIFWRYLNRL 72 (123)
Q Consensus 36 ~iaraL~~~p-~lliLDEPt~gLD~~~~~~i~~~l~~l 72 (123)
.+..++...| .++++||. ..+++.....+.+.+.+-
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 3455555444 79999998 567888888888888663
No 219
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=59.55 E-value=9.8 Score=28.67 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 38 AVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 38 araL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
...+..+.+++++||+-..+.....+.+.+.+.+.. .+..+|+++.+
T Consensus 70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~-~~~~~il~~~~ 116 (343)
T 1jr3_D 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNK 116 (343)
T ss_dssp HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB-TTEEEEEEESC
T ss_pred CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCC-CCeEEEEEcCC
Confidence 345667899999999977677666666776665433 35566666654
No 220
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=58.95 E-value=9.7 Score=32.96 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHH
Q psy6940 33 RRVSIAVTLLHSPSLVILDEPTSGLD----------PVLANIFWRYLNRLSVQ-GQTIIITTHYIEEAR 90 (123)
Q Consensus 33 qrv~iaraL~~~p~lliLDEPt~gLD----------~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~ 90 (123)
-+..+..+....|.++++||+-..+. ......+.+.+..+... +..+|.+||+.+.+.
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 34456666677899999999944332 22223344444333333 578888999876553
No 221
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=58.94 E-value=13 Score=24.83 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=36.6
Q ss_pred HHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 37 IAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 37 iaraL~~~p--~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
+.+|+-... .++|.|+-+..-|+..+..+.+++....+.|..|.++|.+-..-.+
T Consensus 46 V~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~el~e~~~~~G~~V~ivs~~~~~G~q 102 (124)
T 1x52_A 46 VEKANEAMAIDTLLISDELFRHQDVATRSRYVRLVDSVKENAGTVRIFSSLHVSGEQ 102 (124)
T ss_dssp HHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHHH
T ss_pred HHHHHHcCCccEEEechhhhcCCChHHHHHHHHHHHHHHHcCCEEEEECCCCccHHH
Confidence 344444443 6667777666568888888888555555668888888876665544
No 222
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=58.66 E-value=32 Score=22.08 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 40 TLLHSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 40 aL~~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
++..+++.+++| .....+|......+....+++.+.|..+.++.-...
T Consensus 47 ~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~~~~~~ 95 (125)
T 2ka5_A 47 FLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNEK 95 (125)
T ss_dssp TTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred HhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 344567888998 567899999999999999988877888888865443
No 223
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=57.97 E-value=15 Score=27.30 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 44 SPSLVILDEPTSGLD-PVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 44 ~p~lliLDEPt~gLD-~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
+++++++||.-. +. ......+...+.+.. .+..+|++|+....
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCccc
Confidence 789999999843 44 566666777776643 35678888887653
No 224
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=57.33 E-value=7.7 Score=29.02 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=24.9
Q ss_pred CCCEEEEeCCCCCCCHH-HHHHHHHHHHHHh----hCCcEEEEEeCCH
Q psy6940 44 SPSLVILDEPTSGLDPV-LANIFWRYLNRLS----VQGQTIIITTHYI 86 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~-~~~~i~~~l~~l~----~~g~tviivtH~~ 86 (123)
+|.++++||.-.-.+.. ....+..+++... ..+..+|++|++.
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 46799999985432211 3344555554332 3367899999876
No 225
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=57.02 E-value=18 Score=26.12 Aligned_cols=55 Identities=22% Similarity=0.150 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHhh----C--CcEEEEEeCCHHHHH
Q psy6940 36 SIAVTLLHSPSLVILDEPTS-----GLDPVLANIFWRYLNRLSV----Q--GQTIIITTHYIEEAR 90 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEPt~-----gLD~~~~~~i~~~l~~l~~----~--g~tviivtH~~~~~~ 90 (123)
.+..+...+|.++++||.-. ..++.....+.+.+.++.. . +..||.+|+..+.+.
T Consensus 116 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 116 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred HHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 34445556799999999411 1122222344555544432 2 234667777776543
No 226
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=56.94 E-value=17 Score=26.46 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=30.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++.++++||. ..+++.....+.+.+.+.. .+..+|+++.+..
T Consensus 109 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 109 ASFKIIFLDEA-DALTQDAQQALRRTMEMFS-SNVRFILSCNYSS 151 (327)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CCCeEEEEeCC-CcCCHHHHHHHHHHHHhcC-CCCeEEEEeCCcc
Confidence 46899999996 4467777777777776532 3566777887654
No 227
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A
Probab=56.36 E-value=19 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHHH
Q psy6940 45 PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEEA 89 (123)
Q Consensus 45 p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~~ 89 (123)
-..+++| +|.++...+.+.+.++++......-|++|| +.+.+
T Consensus 35 ~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~ 77 (233)
T 3q6v_A 35 DGITIIG---ATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRA 77 (233)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHHHCCCCEEEEECSSSSHHHH
T ss_pred CeEEEEE---CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCChhhh
Confidence 4567777 456676677788888776444667788888 44433
No 228
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=55.73 E-value=33 Score=26.97 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHH--h--cCCCEEEEeCCCCCCC-------H--------HHHHHHHHHHHHH----hhCCcEEEEEeCC
Q psy6940 29 GGQVRRVSIAVTL--L--HSPSLVILDEPTSGLD-------P--------VLANIFWRYLNRL----SVQGQTIIITTHY 85 (123)
Q Consensus 29 gGqrqrv~iaraL--~--~~p~lliLDEPt~gLD-------~--------~~~~~i~~~l~~l----~~~g~tviivtH~ 85 (123)
.++++.+.++..+ + .+|+++++|--++=.. + ...+.+.+.++++ ++.|.+||++-|-
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 4565657777776 3 4699999998765431 0 1223344445443 3459999999997
Q ss_pred HH
Q psy6940 86 IE 87 (123)
Q Consensus 86 ~~ 87 (123)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 65
No 229
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=55.68 E-value=16 Score=29.74 Aligned_cols=54 Identities=9% Similarity=0.221 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHH
Q psy6940 35 VSIAVTLLHSPSLVILDEPT----------SGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEE 88 (123)
Q Consensus 35 v~iaraL~~~p~lliLDEPt----------~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~ 88 (123)
-.+..|--..|.+|++||-- ..+.......++..+...... +..||.+|+..+.
T Consensus 288 ~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS 352 (489)
T ss_dssp HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence 34555666789999999961 222233444555555554333 5667778887754
No 230
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=54.99 E-value=31 Score=21.26 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=39.4
Q ss_pred HHHHHhcC-CCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 37 IAVTLLHS-PSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 37 iaraL~~~-p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+..++... ++.+++| .....+|......+.+..+++.+.|..+.++.-...
T Consensus 34 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 86 (116)
T 1th8_B 34 VTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQMVVCAVSPA 86 (116)
T ss_dssp HHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEESCCHH
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeEEEEeCCHH
Confidence 33444443 7888999 557889999999999999998888888888776554
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=54.63 E-value=27 Score=27.43 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=27.6
Q ss_pred HHHHHH-HHHHHhcCCCEEEEeCCCCCCCHHH--------HHHHHHHHHH---Hh-hCCcEEEEEeC
Q psy6940 31 QVRRVS-IAVTLLHSPSLVILDEPTSGLDPVL--------ANIFWRYLNR---LS-VQGQTIIITTH 84 (123)
Q Consensus 31 qrqrv~-iaraL~~~p~lliLDEPt~gLD~~~--------~~~i~~~l~~---l~-~~g~tviivtH 84 (123)
..+.+. +...+...+ ++++||-.+=-.... .+.+.+.+.+ +. +.|.++|++++
T Consensus 169 le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 169 FNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp HHHHHHHHHHHHHHCS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHhhCC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 344443 444444444 999999765322111 1223333333 33 34889999887
No 232
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.80 E-value=52 Score=26.56 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHHH
Q psy6940 33 RRVSIAVTLLHSPSLVILDEPTS----------GLDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEEA 89 (123)
Q Consensus 33 qrv~iaraL~~~p~lliLDEPt~----------gLD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~~ 89 (123)
-|-.+..|-.+.|.++++||--+ +-|......+..+|..+- . .+..||.+|+.++.+
T Consensus 263 ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 263 IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 45567777778999999999842 224444445556666553 2 356789999987654
No 233
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.66 E-value=14 Score=26.88 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+++++++||. -.++......+.+.+.+.. .+..+|++|++..
T Consensus 107 ~~~viiiDe~-~~l~~~~~~~L~~~le~~~-~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEA-DSMTAGAQQALRRTMELYS-NSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESG-GGSCHHHHHTTHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEECc-ccCCHHHHHHHHHHHhccC-CCceEEEEeCChh
Confidence 4899999996 3456666666777766532 4567888887764
No 234
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=53.29 E-value=34 Score=20.52 Aligned_cols=38 Identities=13% Similarity=0.234 Sum_probs=23.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..|+++++|--..+.|- ..+.+.+++.. .+..||++|.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 83 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKID-PNAKIIVCSA 83 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHC-TTCCEEEEEC
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhC-CCCeEEEEeC
Confidence 57999999987766653 23455555533 2344554443
No 235
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=52.22 E-value=27 Score=22.87 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=25.4
Q ss_pred cCCCEEE--EeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 43 HSPSLVI--LDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 43 ~~p~lli--LDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
.++++++ +| ++ +. ..+..++.++.+.+..+|++.|..+...
T Consensus 80 ~~~~~~i~v~D-~~---~~---~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 80 EKPDLVVNIVD-AT---AL---ERNLYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HCCSEEEEEEE-TT---CH---HHHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CCCCEEEEEec-CC---ch---hHhHHHHHHHHhcCCCEEEEEEchHhcc
Confidence 3777655 34 22 22 2334455555556889999999988764
No 236
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.83 E-value=28 Score=27.94 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSG----------LDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEE 88 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~g----------LD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~ 88 (123)
|-.+..|-...|.++++||--+- -|......+.+++..+- . .+..||.+|+.++.
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 34566666788999999997432 23344445556665553 2 36778999987653
No 237
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=51.51 E-value=38 Score=20.53 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=39.2
Q ss_pred HHHHHhcCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 37 IAVTLLHSP-SLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 37 iaraL~~~p-~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+..++...+ +.+++| .....+|......+.+..+++.+.|..+.++.-...
T Consensus 35 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 87 (110)
T 1sbo_A 35 LRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLKES 87 (110)
T ss_dssp HHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred HHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 333444444 788999 567899999999999999988888888888766543
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=51.23 E-value=29 Score=26.08 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=31.7
Q ss_pred HHHHHHHh--cCCC--EEEEeCCCCC------CCH-HHHHHHHHHHHHHhhC-CcEEEEEeCC
Q psy6940 35 VSIAVTLL--HSPS--LVILDEPTSG------LDP-VLANIFWRYLNRLSVQ-GQTIIITTHY 85 (123)
Q Consensus 35 v~iaraL~--~~p~--lliLDEPt~g------LD~-~~~~~i~~~l~~l~~~-g~tviivtH~ 85 (123)
.+.++.+. .+++ ++++|--+.- -+. .....+...|+.++++ |++||+++|-
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql 230 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 230 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHhcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 34444554 3678 9999965321 111 2334566667777665 9999999993
No 239
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=50.62 E-value=44 Score=21.01 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=24.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|-...+.|- ..+.+.+++.. .+..||++|.
T Consensus 47 ~~~~dlvllD~~lp~~~g---~~l~~~l~~~~-~~~~ii~ls~ 85 (141)
T 3cu5_A 47 KHPPNVLLTDVRMPRMDG---IELVDNILKLY-PDCSVIFMSG 85 (141)
T ss_dssp TSCCSEEEEESCCSSSCH---HHHHHHHHHHC-TTCEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhhC-CCCcEEEEeC
Confidence 357999999988777764 23455555532 3455665554
No 240
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=50.14 E-value=42 Score=26.02 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh--CCcEEEEEeCC
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV--QGQTIIITTHY 85 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~--~g~tviivtH~ 85 (123)
.+++..+|+..|+++++=|- ..|. +.+.+.+++..+ ++..||+++--
T Consensus 175 ~lAl~a~lA~ga~~iliPE~--~~~~---~~i~~~i~~~~~~gk~~~iIvvaEG 223 (319)
T 1zxx_A 175 DIAMRVGVACGADAIVIPER--PYDV---EEIANRLKQAQESGKDHGLVVVAEG 223 (319)
T ss_dssp HHHHHHHHHTTCSEEECTTS--CCCH---HHHHHHHHHHHHTTCCCEEEEEETT
T ss_pred HHHHHHHHhcCCCEEEeCCC--CCCH---HHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 57899999999999999442 3343 456666665442 46677777753
No 241
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=49.96 E-value=22 Score=25.23 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 54 TSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 54 t~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..||++...+.+.+++....++|..+.+++=..
T Consensus 30 ~~gl~~~aa~al~~m~~~a~~~Gi~l~i~sgyR 62 (179)
T 2vo9_A 30 AGGMYKITSDKTRNVIKKMAKEGIYLCVAQGYR 62 (179)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred ccccCHHHHHHHHHHHHHHHHCCCeEEEEEEEC
Confidence 458999999999999999888898877766544
No 242
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.15 E-value=36 Score=27.68 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTS----------GLDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEEA 89 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~----------gLD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~~ 89 (123)
|-.+..|-...|.++++||--+ +-+......+..+|..+- . .+..||.+|+.++.+
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 5566667778899999999632 223344455556665542 2 367889999988765
No 243
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=48.99 E-value=35 Score=20.86 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=20.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
-.+|+++|+|-...+.|. ..+.+.+++....-..|+++++.
T Consensus 49 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 49 GFTPDLMICDIAMPRMNG---LKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp TCCCSEEEECCC-----C---HHHHHHHHHTTCCCCEEEEECCC
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCEEEEEcCC
Confidence 467999999976655442 23444555432222344455443
No 244
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=48.91 E-value=31 Score=25.12 Aligned_cols=43 Identities=7% Similarity=0.129 Sum_probs=27.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEEA 89 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~~ 89 (123)
+-..+|.|= |.++...+++.+.+++......+-|+.|| +.+.+
T Consensus 83 ~~~~ilIDt---g~~~~~~~~l~~~i~~~~~~~I~~Ii~TH~H~DH~ 126 (270)
T 4eyb_A 83 GGRVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKM 126 (270)
T ss_dssp TTEEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHH
T ss_pred CCEEEEEeC---CCCHHHHHHHHHHHHHhcCCceEEEEeCCCChhhc
Confidence 345677774 45777777888888765433455577888 55443
No 245
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=48.90 E-value=23 Score=23.14 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=30.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEEA 89 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~~ 89 (123)
+..++++||.- .+++..+..+.+.+... ..+..+|.+|+ ++...
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVEL 120 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHHH
Confidence 66899999984 68888888888887432 23455666666 44443
No 246
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=48.11 E-value=17 Score=24.13 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=29.1
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 40 TLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 40 aL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.|..+.+++++.+|...+.....+.+.+++.... .+..+|++.+.
T Consensus 72 slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~-~~~~lvi~~~k 116 (140)
T 1jql_B 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLH-DDLLLIVRGNK 116 (140)
T ss_dssp CTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCC-SSCCEEEECSS
T ss_pred CCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCC-CCEEEEEEeCC
Confidence 3467889999999987776666666777776543 33344444343
No 247
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=48.07 E-value=50 Score=20.88 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++|+|--..+.|. ..+.+.+++.. .+..||++|.
T Consensus 64 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~ 102 (150)
T 4e7p_A 64 KESVDIAILDVEMPVKTG---LEVLEWIRSEK-LETKVVVVTT 102 (150)
T ss_dssp TSCCSEEEECSSCSSSCH---HHHHHHHHHTT-CSCEEEEEES
T ss_pred ccCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCeEEEEeC
Confidence 467999999988777664 23445555432 2445555554
No 248
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=48.06 E-value=47 Score=20.62 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=24.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
-..|+++|+|--..+.|-. .+.+.+++....-..|+++++.
T Consensus 42 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 82 (139)
T 2jk1_A 42 EEWVQVIICDQRMPGRTGV---DFLTEVRERWPETVRIIITGYT 82 (139)
T ss_dssp HSCEEEEEEESCCSSSCHH---HHHHHHHHHCTTSEEEEEESCT
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHHhCCCCcEEEEeCCC
Confidence 3679999999887777742 3445555432222334445443
No 249
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=47.98 E-value=46 Score=23.38 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=29.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ--GQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tviivtH 84 (123)
..+|+++|+..+.+.++......+..+...+... ..++|+.+|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 4578999999998888886665555544433221 257888888
No 250
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=47.40 E-value=0.093 Score=39.09 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEP 53 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEP 53 (123)
....|||||+|++.+++|+.++|++ +|++
T Consensus 166 ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 166 LLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 3456899999999999999999987 6765
No 251
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=47.40 E-value=48 Score=25.70 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh--CCcEEEEEeCC
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV--QGQTIIITTHY 85 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~--~g~tviivtH~ 85 (123)
.+++..+|+..|+++++=|- ..|. +.+.+.+++..+ ++..||+++--
T Consensus 176 ~lAl~a~lA~ga~~iliPE~--~~~~---~~i~~~i~~~~~~gk~~~iIvvaEG 224 (320)
T 1pfk_A 176 DLTLAAAIAGGCEFVVVPEV--EFSR---EDLVNEIKAGIAKGKKHAIVAITEH 224 (320)
T ss_dssp HHHHHHHHHTTCSEEECTTS--CCCH---HHHHHHHHHHHHTTCSCEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEeCCC--CCCH---HHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 57899999999999999442 3343 456666665432 46677777753
No 252
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=47.10 E-value=47 Score=20.35 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|-...+.|-. .+.+.+++.. ....||++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (136)
T 1mvo_A 45 TEKPDLIVLDVMLPKLDGI---EVCKQLRQQK-LMFPILMLTA 83 (136)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEEC
T ss_pred hcCCCEEEEecCCCCCCHH---HHHHHHHcCC-CCCCEEEEEC
Confidence 3579999999888777742 3455555432 2344555443
No 253
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=46.99 E-value=54 Score=23.23 Aligned_cols=39 Identities=18% Similarity=0.141 Sum_probs=27.7
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Q psy6940 33 RRVSIAVTLL---HSPSLVILDEPTSGLDPVLANIFWRYLNRLS 73 (123)
Q Consensus 33 qrv~iaraL~---~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~ 73 (123)
+|+++..||. .+-+++++|+- .++..-.+.+.+++..+.
T Consensus 74 rrlAl~sALs~k~~~~~lvVvd~~--~~~~~KTK~~~~~l~~l~ 115 (175)
T 2ftc_D 74 RALGLKVALTVKLAQDDLHIMDSL--ELPTGDPQYLTELAHYRR 115 (175)
T ss_pred HHHHHHHHHHHhccCCCEEEEecc--cCCCCCHHHHHHHHHHCC
Confidence 7888888885 46689999985 344444566777777654
No 254
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.67 E-value=49 Score=26.57 Aligned_cols=55 Identities=20% Similarity=0.377 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEP----------TSGLDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEE 88 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEP----------t~gLD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~ 88 (123)
|-.+..|-...|.++++||- ..+-|....+.+.+++..+- . .|..||.+|+.++.
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 34556666788999999997 23334444444555554442 2 36788999987653
No 255
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=46.27 E-value=47 Score=20.05 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=24.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (124)
T 1srr_A 45 KERPDLVLLDMKIPGMDGI---EILKRMKVID-ENIRVIIMTA 83 (124)
T ss_dssp HHCCSEEEEESCCTTCCHH---HHHHHHHHHC-TTCEEEEEES
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCCEEEEEc
Confidence 3689999999877777642 3445555432 2445555543
No 256
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=46.08 E-value=1.1 Score=32.10 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=26.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-----CCcEEEEEeCCHHHHHh-hccee
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-----QGQTIIITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-----~g~tviivtH~~~~~~~-~d~v~ 96 (123)
+..|+..+++|++.+.|....+.+.+.+..... ....+++++|+++.+.. +++++
T Consensus 146 v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i 206 (231)
T 3lnc_A 146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206 (231)
T ss_dssp EECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHH
Confidence 445566667788888887666666655543321 24578888999888765 76666
No 257
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.81 E-value=48 Score=26.71 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHHH
Q psy6940 33 RRVSIAVTLLHSPSLVILDEPT----------SGLDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEEA 89 (123)
Q Consensus 33 qrv~iaraL~~~p~lliLDEPt----------~gLD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~~ 89 (123)
-|-.+..|-...|.++++||-- .+=+......+..++..+- . .+..||.+|+.++.+
T Consensus 263 ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 263 VRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp HHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred HHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 3556667777899999999952 1223344444555555552 2 356788899877644
No 258
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=45.73 E-value=28 Score=27.06 Aligned_cols=57 Identities=14% Similarity=-0.006 Sum_probs=36.7
Q ss_pred HHHHHHHHHh--c-CCCEEEEeCCCCCCCHH-------HHHHHHHHHHHHhhC-CcEEEEEeCCHHHH
Q psy6940 33 RRVSIAVTLL--H-SPSLVILDEPTSGLDPV-------LANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89 (123)
Q Consensus 33 qrv~iaraL~--~-~p~lliLDEPt~gLD~~-------~~~~i~~~l~~l~~~-g~tviivtH~~~~~ 89 (123)
+-.+.++.+. + +++++|+|--..--.+. ....+...|+.++++ +++||+++|--...
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~ 209 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSL 209 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence 3445555554 3 68999999665432222 134566677777766 99999999955444
No 259
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.71 E-value=49 Score=20.08 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEE-EEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII-ITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi-ivtH~ 85 (123)
-.+|+++|+|=-..+.|- ..+.+.+++. .+..|| ++++.
T Consensus 44 ~~~~dlii~D~~~p~~~g---~~~~~~lr~~--~~~~ii~~t~~~ 83 (120)
T 3f6p_A 44 ELQPDLILLDIMLPNKDG---VEVCREVRKK--YDMPIIMLTAKD 83 (120)
T ss_dssp TTCCSEEEEETTSTTTHH---HHHHHHHHTT--CCSCEEEEEESS
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCCCEEEEECCC
Confidence 468999999987776653 2344444432 244455 44443
No 260
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=45.40 E-value=59 Score=25.78 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=30.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
..|++++|-|.+|++... .+.+..++. ..++++|.++..+.+
T Consensus 353 ~fD~Vv~dPPr~g~~~~~----~~~l~~l~p--~givyvsc~p~tlar 394 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRL----VKRLNREKP--GVIVYVSCNPETFAR 394 (425)
T ss_dssp TCSEEEECCCTTCSCHHH----HHHHHHHCC--SEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCccchHHHH----HHHHHhcCC--CcEEEEECChHHHHh
Confidence 579999999999998644 344444442 358888999887765
No 261
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=45.16 E-value=52 Score=20.28 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++|+|--..+.|- ..+.+.+++.. .+..||++|.
T Consensus 47 ~~~~dlvilD~~lp~~~g---~~~~~~l~~~~-~~~~ii~ls~ 85 (133)
T 3b2n_A 47 EYNPNVVILDIEMPGMTG---LEVLAEIRKKH-LNIKVIIVTT 85 (133)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHTT-CSCEEEEEES
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHHHC-CCCcEEEEec
Confidence 358999999987777664 23445555422 2455555554
No 262
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=45.13 E-value=50 Score=20.02 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=25.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH 84 (123)
-..|+++|+|-...+.|. ..+.+.+++.. ..+..||++|.
T Consensus 45 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 45 TRGYDAVFIDLNLPDTSG---LALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HSCCSEEEEESBCSSSBH---HHHHHHHHHSCCSSCCEEEEEEC
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhhhccCCCCEEEEEC
Confidence 367999999988777764 33555555532 22455665554
No 263
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=45.00 E-value=62 Score=24.32 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCCEEEEeCCCC--------------CCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 44 SPSLVILDEPTS--------------GLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 44 ~p~lliLDEPt~--------------gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.-+++.+|-|-. +-+.....++.+.++++.++|.-++++-++-.++.+
T Consensus 187 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~f~~~dh~~L~~~l~~l~~~g~~~~lS~~d~~~i~~ 248 (284)
T 2dpm_A 187 TGDFVYFDPPYIPLSETSAFTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEE 248 (284)
T ss_dssp TTCEEEECCCCCCC-----CCCCCCSSCCHHHHHHHHHHHHHHHTTTCEEEEEEESCHHHHH
T ss_pred CCCEEEeCCCcccccCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCCHHHHH
Confidence 347899999853 246667778999999987778899999999888765
No 264
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=44.86 E-value=55 Score=24.37 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHhh--CCcEEEEEeCCHHH
Q psy6940 36 SIAVTLLHSPSLVILDEPTSG----------LDPVLANIFWRYLNRLSV--QGQTIIITTHYIEE 88 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEPt~g----------LD~~~~~~i~~~l~~l~~--~g~tviivtH~~~~ 88 (123)
.+..+-..+|.+|++||--+- ........+...+..+.. .+..||.+|+.++.
T Consensus 102 ~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 102 LFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 445555678999999997421 112233445555544432 25566668887544
No 265
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=44.80 E-value=47 Score=19.69 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=24.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++++|-...+.|-. .+.+.+++.. .+..||++|.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 81 (116)
T 3a10_A 43 SGNYDLVILDIEMPGISGL---EVAGEIRKKK-KDAKIILLTA 81 (116)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHHC-TTCCEEEEES
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHccC-CCCeEEEEEC
Confidence 3679999999887777642 3455555533 2344555544
No 266
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=44.42 E-value=51 Score=19.98 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (126)
T 1dbw_A 45 DVRNGVLVTDLRMPDMSGV---ELLRNLGDLK-INIPSIVITG 83 (126)
T ss_dssp GCCSEEEEEECCSTTSCHH---HHHHHHHHTT-CCCCEEEEEC
T ss_pred cCCCCEEEEECCCCCCCHH---HHHHHHHhcC-CCCCEEEEEC
Confidence 3579999999877777642 3444555432 2444555544
No 267
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=44.22 E-value=31 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 55 SGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 55 ~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
+|||+.....+.+++.....+|..+.+++=.
T Consensus 31 ~gLdp~~a~al~~m~~aA~~~Gi~l~v~sGy 61 (179)
T 1xp2_A 31 GGMYKITSDKTRNVIKKMAKEGIYLCVAQGY 61 (179)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 6999999999999998888888886665543
No 268
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=44.16 E-value=48 Score=25.27 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCC----------HHHHHHHHHHHHHHhh--CCcEEEEEeCCHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLD----------PVLANIFWRYLNRLSV--QGQTIIITTHYIE 87 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD----------~~~~~~i~~~l~~l~~--~g~tviivtH~~~ 87 (123)
+-.+..+-..+|.+|++||--+-.. ......++..+..+.. .+..||.+|+.++
T Consensus 133 ~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 133 KQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp HHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred HHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 3344455557899999999753211 1123334444443322 3566777888664
No 269
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=43.99 E-value=53 Score=20.02 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=24.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-.+|+++|+|-...+.|. ..+.+.+++... .+..||++|.
T Consensus 45 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 45 AHPPDVLISDVNMDGMDG---YALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HSCCSEEEECSSCSSSCH---HHHHHHHHHSTTTTTCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhCCccCCCCEEEEeC
Confidence 468999999988777764 234555555321 2445555554
No 270
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=43.82 E-value=15 Score=27.77 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=29.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+++++|+||.- .+.......+.+.+.+-. .+..+|++|++.+
T Consensus 107 ~~~kvviIdead-~l~~~a~naLLk~lEep~-~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 107 GGAKVVWVTDAA-LLTDAAANALLKTLEEPP-AETWFFLATREPE 149 (334)
T ss_dssp SSCEEEEESCGG-GBCHHHHHHHHHHHTSCC-TTEEEEEEESCGG
T ss_pred CCcEEEEECchh-hcCHHHHHHHHHHhcCCC-CCeEEEEEeCChH
Confidence 356999999974 466666666666654321 3567888898875
No 271
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.82 E-value=68 Score=26.29 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHH
Q psy6940 33 RRVSIAVTLLHSPSLVILDEPTSG----------LDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEE 88 (123)
Q Consensus 33 qrv~iaraL~~~p~lliLDEPt~g----------LD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~ 88 (123)
-|-.+..|-...|.++++||--+- -+......+..+|.++- . .+..||.+|+.++.
T Consensus 291 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 291 VRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp HHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred HHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 456677777889999999998532 23334445566666553 2 35678888986653
No 272
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=43.65 E-value=84 Score=23.53 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC-------CCCHHHHHHHHHHHHHHh-----hCCcEEEEEeCCHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTS-------GLDPVLANIFWRYLNRLS-----VQGQTIIITTHYIE 87 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~-------gLD~~~~~~i~~~l~~l~-----~~g~tviivtH~~~ 87 (123)
+-.+..+-..+|.++++||.-+ +......+.+.+++..+. ..+..||.+|+.++
T Consensus 95 ~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 95 KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp HHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 3344555567899999999742 112222233333444432 13556777787654
No 273
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A
Probab=43.59 E-value=27 Score=24.10 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=26.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHH
Q psy6940 45 PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEE 88 (123)
Q Consensus 45 p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~ 88 (123)
-..+++| +|..+...+.+.+.++++......-|+.|| +.+.
T Consensus 32 ~~~iLiD---~G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH 73 (227)
T 3iog_A 32 KGVTVVG---ATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDR 73 (227)
T ss_dssp SCEEEES---CCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHH
T ss_pred CeEEEEE---CCCChHHHHHHHHHHHHhcCCCeEEEEeCCCchhh
Confidence 3467777 355666667777777764334566788888 4443
No 274
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=43.52 E-value=67 Score=30.62 Aligned_cols=53 Identities=11% Similarity=0.200 Sum_probs=34.1
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH----hhCCcEEEEEeCC
Q psy6940 33 RRVSIAVTLL--HSPSLVILDEPTSGLDPV-------------LANIFWRYLNRL----SVQGQTIIITTHY 85 (123)
Q Consensus 33 qrv~iaraL~--~~p~lliLDEPt~gLD~~-------------~~~~i~~~l~~l----~~~g~tviivtH~ 85 (123)
|-+.+++.++ .+|+++++|..++-.... ..+.+.+.++++ ++.|++||+++|-
T Consensus 448 ~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 3445566554 579999999998765411 123345555555 3349999999884
No 275
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=43.41 E-value=60 Score=20.47 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=23.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++|+|--..+.|. ..+.+.+++.. ....||++|.
T Consensus 59 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 97 (152)
T 3eul_A 59 AHLPDVALLDYRMPGMDG---AQVAAAVRSYE-LPTRVLLISA 97 (152)
T ss_dssp HHCCSEEEEETTCSSSCH---HHHHHHHHHTT-CSCEEEEEES
T ss_pred hcCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCeEEEEEc
Confidence 368999999988777764 23444454432 2444555444
No 276
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=43.37 E-value=63 Score=20.67 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
+|+++|+|=-..+.|- ..+.+.+++....-..|+++++
T Consensus 83 ~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDG---ITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp GCCEEEECSSCSSSCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred CCCEEEEeccCCCccH---HHHHHHHHhhCCCCcEEEEecc
Confidence 7899999988877774 2355555554323334444444
No 277
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.30 E-value=43 Score=25.00 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh----------hCCcEEEEEeCC
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLS----------VQGQTIIITTHY 85 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~----------~~g~tviivtH~ 85 (123)
+..++++||.- .+++..+..+...+.+.. ..+..||.+|+.
T Consensus 96 ~~g~L~LDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 96 DGGTLFLDEIG-DISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp TTSEEEEESCT-TCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CCCEEEEeccc-cCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 56899999964 567777777777776532 124668888875
No 278
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=43.22 E-value=52 Score=26.07 Aligned_cols=46 Identities=15% Similarity=0.126 Sum_probs=35.9
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 46 SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 46 ~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.+||.|+-+..-|+..+..+.+++....+.|..|.+++.+-+.-.+
T Consensus 310 tLLI~d~l~r~~d~~~r~~~~~L~e~~~~~Gg~V~ivs~~~~~G~q 355 (390)
T 3mca_B 310 ELLISDSLFRSSDIATRKKWVSLVEGVKEINCPVYIFSSLHESGKQ 355 (390)
T ss_dssp SCEEEETTCCCSCHHHHHHHHHHHHHHHHTTCCEEEECTTSHHHHH
T ss_pred EEEEecccccCCChhHHHHHHHHHHHHHhcCCEEEEECCCCCchhh
Confidence 6999999998889988888887776666678888888876555443
No 279
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=42.99 E-value=58 Score=20.16 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=21.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++|+|- ..+.+ ...+.+.+++.. .+..||++|.
T Consensus 46 ~~~~dlvi~d~-~~~~~---g~~~~~~l~~~~-~~~pii~ls~ 83 (142)
T 2qxy_A 46 REKIDLVFVDV-FEGEE---SLNLIRRIREEF-PDTKVAVLSA 83 (142)
T ss_dssp TSCCSEEEEEC-TTTHH---HHHHHHHHHHHC-TTCEEEEEES
T ss_pred ccCCCEEEEeC-CCCCc---HHHHHHHHHHHC-CCCCEEEEEC
Confidence 36799999997 54322 234555555432 2455555554
No 280
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=42.96 E-value=97 Score=22.75 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=40.3
Q ss_pred HHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHHHh--hccee
Q psy6940 37 IAVTLLHSPSLVILDEPTSG-------LDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEARQ--ANTVF 96 (123)
Q Consensus 37 iaraL~~~p~lliLDEPt~g-------LD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~~~--~d~v~ 96 (123)
+.+++....+++.|=|+... ++.....++.+.++++.++ |..+ ++..+.+.+.. +|-|-
T Consensus 49 ~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~l-iInd~~~lA~~~gAdGVH 117 (243)
T 3o63_A 49 AEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALF-AVNDRADIARAAGADVLH 117 (243)
T ss_dssp HHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEE-EEESCHHHHHHHTCSEEE
T ss_pred HHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEE-EEeCHHHHHHHhCCCEEE
Confidence 34567788999999999854 8888777777778887654 5544 44444555543 66555
No 281
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=42.74 E-value=57 Score=20.04 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=24.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
-.+|+++|+|--..+.|. ..+.+.+++.. .+..||++|..
T Consensus 49 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 88 (137)
T 3hdg_A 49 LHAPDVIITDIRMPKLGG---LEMLDRIKAGG-AKPYVIVISAF 88 (137)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHTT-CCCEEEECCCC
T ss_pred ccCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCcEEEEecC
Confidence 368999999988777664 23445555432 34556655543
No 282
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=42.66 E-value=15 Score=27.82 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=29.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+++|+||+- .+.....+.+.+.+.+.. ....+|++|+++.-+
T Consensus 82 ~~kvviIdead-~lt~~a~naLLk~LEep~-~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 82 TRKYVIVHDCE-RMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYL 125 (305)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGS
T ss_pred CceEEEeccHH-HhCHHHHHHHHHHHhCCC-CCeEEEEEECChHhC
Confidence 35899999984 356666666666665432 356788888887543
No 283
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=42.32 E-value=0.088 Score=38.50 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy6940 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPT 54 (123)
Q Consensus 23 ~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt 54 (123)
....|||||+|++.+++|+.++|++ +|++.
T Consensus 142 ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 142 LLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred HHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 3456789999999999999999987 67764
No 284
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=41.96 E-value=77 Score=30.19 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHHHHh--cCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---h-hCCcEEEEEeC
Q psy6940 33 RRVSIAVTLL--HSPSLVILDEPTSGLD-P------------VLANIFWRYLNRL---S-VQGQTIIITTH 84 (123)
Q Consensus 33 qrv~iaraL~--~~p~lliLDEPt~gLD-~------------~~~~~i~~~l~~l---~-~~g~tviivtH 84 (123)
+....++.++ .+|+++++|+..+-.. . ...+.+.+.++++ . +.|.+||+++|
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinq 867 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4555555543 6899999999987552 1 1223455555554 3 34999999998
No 285
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=41.11 E-value=59 Score=19.75 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=24.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-.+|+++|+|-...+.|. ..+.+.+++... ....|++++.
T Consensus 48 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 48 TFEPAIMTLDLSMPKLDG---LDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HTCCSEEEEESCBTTBCH---HHHHHHHHTTTCSSCCEEEEECC
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhcCccCCCeEEEEeC
Confidence 478999999988877764 234444544321 2345555554
No 286
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=40.22 E-value=46 Score=22.93 Aligned_cols=41 Identities=12% Similarity=-0.048 Sum_probs=24.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHh--hCCcEEEEEeCCHHH
Q psy6940 45 PSLVILDEPTSGLDPVLANIFWRYLNRLS--VQGQTIIITTHYIEE 88 (123)
Q Consensus 45 p~lliLDEPt~gLD~~~~~~i~~~l~~l~--~~g~tviivtH~~~~ 88 (123)
+++-..|+-+.+=|+ ..+.+.+.++. ..+.+|++|+|++..
T Consensus 72 ~~~~~~~~L~~~~~~---~~~~~~l~~~~~~~~~~~vllVgH~P~l 114 (172)
T 3f2i_A 72 CQLEESNHLAPNGNI---FNWLDYWLKPKNFPENAQIAIVGHEPCL 114 (172)
T ss_dssp SCEEECGGGSTTCCH---HHHHHHTHHHHCCCTTCEEEEEECTTHH
T ss_pred CCeEECcccCCccCH---HHHHHHHHHhccCCCCCEEEEEeCChHH
Confidence 445555554444444 33455555433 457799999998754
No 287
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=40.21 E-value=51 Score=23.03 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=32.9
Q ss_pred hcCCCEEEEeCCCCCCCH-------------------HHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPTSGLDP-------------------VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~-------------------~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+|+++++|=|...--+ ..++.+.+.+.++.+.|..||++.-.++..
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k~I~d~ 91 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDL 91 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCBCHH
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEECCcccHH
Confidence 379999999988653211 133446677777777798999998766544
No 288
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=39.95 E-value=64 Score=19.81 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=23.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 45 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (132)
T 3crn_A 45 NEFFNLALFXIKLPDMEGT---ELLEKAHKLR-PGMKKIMVTG 83 (132)
T ss_dssp HSCCSEEEECSBCSSSBHH---HHHHHHHHHC-TTSEEEEEES
T ss_pred cCCCCEEEEecCCCCCchH---HHHHHHHhhC-CCCcEEEEec
Confidence 4689999999877776642 3444555432 2455555543
No 289
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=39.73 E-value=53 Score=21.12 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=32.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+.-+.-+.||-=.+.|++..+..+.++...+... +..|.++.|
T Consensus 2 i~~~~~i~F~~~s~~l~~~~~~~L~~ia~~l~~~p~~~i~I~Gh 45 (118)
T 2hqs_H 2 LQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGH 45 (118)
T ss_dssp --CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccccceeEecCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 4556778888888899998888877777666654 567888888
No 290
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=39.53 E-value=52 Score=25.19 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHhh---CCcEEEEEeCCHHHH
Q psy6940 36 SIAVTLLHSPSLVILDEPTSG----------LDPVLANIFWRYLNRLSV---QGQTIIITTHYIEEA 89 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEPt~g----------LD~~~~~~i~~~l~~l~~---~g~tviivtH~~~~~ 89 (123)
.+..+-..+|.+|++||--.- ........+...+..... .+..||.+|+..+.+
T Consensus 199 ~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 199 LFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp HHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred HHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 344455578899999998321 112223334444444332 245667778875443
No 291
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=39.40 E-value=74 Score=24.43 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=29.1
Q ss_pred cCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 43 HSPSLVILDEP------TSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 43 ~~p~lliLDEP------t~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
..+.++|+|-| |.|+.+... -.+.|..+++. +.+|+.+++|.
T Consensus 148 ~~~~vlIldqpdlLLa~t~~it~~~L--~~~~I~~L~k~~~~lvvt~saD~ 196 (280)
T 4a8j_C 148 PTDTIVIIEQPELLLSLVSGLTCSEL--NNKFITPLLRQCKVLIIVSNSDI 196 (280)
T ss_dssp TTSEEEEEECGGGHHHHSTTCCHHHH--HHHTHHHHHHTCSEEEEEEECGG
T ss_pred CCCeEEEEcChHHHHHhccCCCHHHH--HHHHHHHHHHhcceEEEEeccCc
Confidence 45789999999 556777553 04555555544 77888888876
No 292
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=39.15 E-value=67 Score=19.79 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=27.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeCCHH
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYIE 87 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH~~~ 87 (123)
-.+|+++|+|--..+.|- ..+.+.+++.. ..+..||++|...+
T Consensus 48 ~~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 48 RRPYAAMTVDLNLPDQDG---VSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp HSCCSEEEECSCCSSSCH---HHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCcccCCCCEEEEecCCC
Confidence 478999999988877775 23455555421 23566777776543
No 293
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=39.11 E-value=46 Score=20.71 Aligned_cols=31 Identities=35% Similarity=0.399 Sum_probs=21.6
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 50 LDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 50 LDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
..|.+.|+|+.. +.+.|+-|.++|++-|+-.
T Consensus 40 ~~~ef~gmd~~~---L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 40 EDEEFHGLDEAT---LLRALQALQQEHKAEIITV 70 (79)
T ss_dssp TTSTTTTCCHHH---HHHHHHHHHHTTSEEEECC
T ss_pred CCCcccCCCHHH---HHHHHHHHHHcCCEEEEec
Confidence 357889999965 4455555666888877754
No 294
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=39.04 E-value=20 Score=26.69 Aligned_cols=13 Identities=0% Similarity=0.048 Sum_probs=10.8
Q ss_pred hcCCCEEEEeCCC
Q psy6940 42 LHSPSLVILDEPT 54 (123)
Q Consensus 42 ~~~p~lliLDEPt 54 (123)
...|.++++||--
T Consensus 97 ~~~~~vl~iDEiD 109 (293)
T 3t15_A 97 KGNMCCLFINDLD 109 (293)
T ss_dssp TSSCCCEEEECCC
T ss_pred cCCCeEEEEechh
Confidence 4579999999983
No 295
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=38.97 E-value=68 Score=19.81 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=22.2
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHH--HhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTS-GLDPVLANIFWRYLNR--LSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~-gLD~~~~~~i~~~l~~--l~~~g~tviivtH 84 (123)
..|+++|+|--.. + .....+.+.+++ .. .+..||++|.
T Consensus 49 ~~~dlvi~D~~l~~~---~~g~~~~~~l~~~~~~-~~~~ii~ls~ 89 (140)
T 3lua_A 49 DSITLIIMDIAFPVE---KEGLEVLSAIRNNSRT-ANTPVIIATK 89 (140)
T ss_dssp CCCSEEEECSCSSSH---HHHHHHHHHHHHSGGG-TTCCEEEEES
T ss_pred CCCcEEEEeCCCCCC---CcHHHHHHHHHhCccc-CCCCEEEEeC
Confidence 5799999997654 3 333445666665 22 2444555443
No 296
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=38.85 E-value=76 Score=22.40 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCEEEEeCC----------CC-CCCHHHHHHHHHHHHHHh---h-CCcEEEEEeCCHHHH
Q psy6940 36 SIAVTLLHSPSLVILDEP----------TS-GLDPVLANIFWRYLNRLS---V-QGQTIIITTHYIEEA 89 (123)
Q Consensus 36 ~iaraL~~~p~lliLDEP----------t~-gLD~~~~~~i~~~l~~l~---~-~g~tviivtH~~~~~ 89 (123)
.+..+-...|.++++||- .. +.+ .....+..++..+. . .+..||.+|+.++.+
T Consensus 96 ~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~-~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 96 MFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD-EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp HHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTC-HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HHHHHHHcCCeeehhhhhhhhccCCCCCcCCCch-HHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 344455566889999996 11 122 22223344444432 2 356788888877543
No 297
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=38.83 E-value=62 Score=19.33 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++++|--..+.|-. .+.+.+++ .....||++|.
T Consensus 44 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~--~~~~~ii~~s~ 81 (122)
T 1zgz_A 44 NQSVDLILLDINLPDENGL---MLTRALRE--RSTVGIILVTG 81 (122)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHT--TCCCEEEEEES
T ss_pred cCCCCEEEEeCCCCCCChH---HHHHHHHh--cCCCCEEEEEC
Confidence 3579999999887777642 34444544 23455665554
No 298
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=38.69 E-value=79 Score=23.55 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCC--------------CCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 44 SPSLVILDEPTSG--------------LDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 44 ~p~lliLDEPt~g--------------LD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
..+++.+|-|-.+ -+.....++.+.++++.++|.-++++-++-.++.+
T Consensus 174 ~~~fvY~DPPY~~~~~~~~f~~Y~~~~F~~~dh~~L~~~l~~l~~~~~~~~lS~~d~~~i~~ 235 (278)
T 2g1p_A 174 DSSVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTRE 235 (278)
T ss_dssp TTEEEEECCSCCCC-----------CCCCHHHHHHHHHHHHHHHHTTCCEEEEEECCHHHHH
T ss_pred CCCEEEeCCcccccCCCCCccccccCCCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCHHHHH
Confidence 3479999998633 24556677999999888778889999999887754
No 299
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=38.60 E-value=1.1e+02 Score=22.04 Aligned_cols=41 Identities=10% Similarity=0.130 Sum_probs=27.4
Q ss_pred CCCEEEEeCCCC--------CCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 44 SPSLVILDEPTS--------GLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 44 ~p~lliLDEPt~--------gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
++.++++||--. ..++.....+.+.+.+. ..+..+|++++.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-~~~~~~i~~~~~ 178 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-RDDLVVILAGYA 178 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC-TTTCEEEEEECH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC-CCCEEEEEeCCh
Confidence 688999999842 33666666677766552 235677777764
No 300
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=38.57 E-value=66 Score=19.52 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=23.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEE-EEeCC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTII-ITTHY 85 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi-ivtH~ 85 (123)
..|+++|+|--..+.|. ..+.+.+++... .+..|| ++++.
T Consensus 54 ~~~dlvi~d~~~~~~~g---~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDG---REVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCCcccH---HHHHHHHHcCcccccccEEEEecCC
Confidence 57999999988777664 234555555321 233444 44443
No 301
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=38.55 E-value=5 Score=26.57 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=23.9
Q ss_pred cCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHhhC-CcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGL----DPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gL----D~~~~~~i~~~l~~l~~~-g~tviivtH~~~ 87 (123)
.+|.++++||--.-. +......+.+.+..+.++ +..+|.+++...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 367899999952211 011112344555554444 566777776544
No 302
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=38.53 E-value=31 Score=28.55 Aligned_cols=48 Identities=13% Similarity=0.344 Sum_probs=34.7
Q ss_pred hcCCCEEEEeCC-------------CCCCCH------HHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEP-------------TSGLDP------VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEP-------------t~gLD~------~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+|+++++|-| .+..+. ..++.+...+.++.+.|..++++.-+++..
T Consensus 231 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~ 297 (545)
T 1a6d_A 231 VKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDV 297 (545)
T ss_dssp EEEEEEEEECSCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHH
T ss_pred ecCCEEEEEecCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHH
Confidence 589999999999 333333 223346777777777899999998877543
No 303
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=38.53 E-value=17 Score=28.36 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=31.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
.|-++++||--+-... ..+.+.+...++.|..++++++++..+.
T Consensus 279 ~~~~~~lDE~~~l~~~---~~l~~~~~~~R~~g~~~~~~~Qs~~ql~ 322 (437)
T 1e9r_A 279 RRLWLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQLD 322 (437)
T ss_dssp CCEEEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHHH
T ss_pred ccEEEEEEcccccccc---hhHHHHHHHHhccCCEEEEEecCHHHHH
Confidence 3568999998764431 1355667776667999999999997664
No 304
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate mutase, structural genomics, PSI, structure initiative; 2.20A {Mycobacterium tuberculosis}
Probab=38.46 E-value=36 Score=23.82 Aligned_cols=25 Identities=4% Similarity=-0.125 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhh--CCcEEEEEeCCHH
Q psy6940 63 NIFWRYLNRLSV--QGQTIIITTHYIE 87 (123)
Q Consensus 63 ~~i~~~l~~l~~--~g~tviivtH~~~ 87 (123)
+++.+.+.++.+ .+.+|++|||..-
T Consensus 129 ~R~~~~l~~l~~~~~~~~vlvVsHg~~ 155 (208)
T 2a6p_A 129 DRADSAVALALEHMSSRDVLFVSHGHF 155 (208)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCHHH
Confidence 445666666643 4679999999753
No 305
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=38.30 E-value=74 Score=20.05 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=25.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
-..|+++|+|-...+.|.. .+.+.+++.. ....||++|..
T Consensus 49 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls~~ 88 (154)
T 2rjn_A 49 GTSVQLVISDMRMPEMGGE---VFLEQVAKSY-PDIERVVISGY 88 (154)
T ss_dssp TSCCSEEEEESSCSSSCHH---HHHHHHHHHC-TTSEEEEEECG
T ss_pred cCCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCcEEEEecC
Confidence 4579999999988777752 3455555532 24556665543
No 306
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=37.94 E-value=67 Score=19.43 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=22.7
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 44 SPSLVILDEPTSG-LDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 44 ~p~lliLDEPt~g-LD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.|+++|+|--..+ .|.. .+.+.+++.. .+..||++|.
T Consensus 50 ~~dlvi~d~~l~~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 87 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDGW---QVARVAREID-PNMPIVYISG 87 (132)
T ss_dssp CCCEEEEESCCSSSSCHH---HHHHHHHHHC-TTCCEEEEES
T ss_pred CCCEEEEeeeCCCCCCHH---HHHHHHHhcC-CCCCEEEEeC
Confidence 7999999987765 6642 3455555533 2444555543
No 307
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=37.76 E-value=63 Score=23.57 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=35.2
Q ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 33 RRVSIAVTLL---HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 33 qrv~iaraL~---~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
+|+++..||. .+-+++++|+-. ++..-.+.+.+.|+.+.-. +..+++|+.|-
T Consensus 106 rrlAl~sALs~k~~~~~l~Vvd~~~--~~~~KTK~~~~~L~~lg~~~~~~~LiV~~~~ 161 (210)
T 3v2d_F 106 RKKGLAMAVADRAREGKLLLVEAFA--GVNGKTKEFLAWAKEAGLDGSESVLLVTGNE 161 (210)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCT--TCSSCHHHHHHHHHHTTCCSSSCEEEECSCH
T ss_pred HHHHHHHHHHHHHhcCCEEEecccc--cCCccHHHHHHHHHHcCCCCCCceEEEeCCh
Confidence 7888888885 466899999864 4444556788888887532 24455565553
No 308
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=37.43 E-value=76 Score=19.96 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=24.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|. ..+.+.+++... +..||++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~l~~~~~-~~~ii~ls~ 87 (153)
T 3cz5_A 49 ETTPDIVVMDLTLPGPGG---IEATRHIRQWDG-AARILIFTM 87 (153)
T ss_dssp TTCCSEEEECSCCSSSCH---HHHHHHHHHHCT-TCCEEEEES
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHHhCC-CCeEEEEEC
Confidence 457999999988777764 245555555432 344555443
No 309
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=37.21 E-value=78 Score=19.98 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=25.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|- ..+.+.+++.. .+..||++|.
T Consensus 56 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 94 (153)
T 3hv2_A 56 SREVDLVISAAHLPQMDG---PTLLARIHQQY-PSTTRILLTG 94 (153)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHHC-TTSEEEEECC
T ss_pred cCCCCEEEEeCCCCcCcH---HHHHHHHHhHC-CCCeEEEEEC
Confidence 468999999988877774 23455555532 3455665554
No 310
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=37.09 E-value=76 Score=21.16 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 30 Gqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
=++|+-.+- ..+.+.++++-|+- ||-+ ..+..+.+++..+.....-+|+|.+
T Consensus 20 l~~Q~~~l~-~~~~g~~~i~~D~~-SG~~-~~Rp~l~~ll~~~~~g~id~vvv~~ 71 (143)
T 3ilx_A 20 LANQVKYLE-EQVKEYDLVITDIG-SGLN-MKRKGFLKLLRMILNNEVSRVITAY 71 (143)
T ss_dssp HHHHHHHHH-HHCSCCSEEEEEES-CTTC-TTCHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHH-HHhCCCeEEEEcCc-cccc-CCcHHHHHHHHHHHhCCCCEEEEEe
Confidence 345555443 44447777666766 8877 4666777777766532234555544
No 311
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=36.82 E-value=64 Score=20.32 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=23.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-..|+++|+|--..+.|- ..+.+.+++... .+..||++|.
T Consensus 57 ~~~~dliilD~~l~~~~g---~~~~~~lr~~~~~~~~pii~~t~ 97 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTG---IDILKLVKENPHTRRSPVVILTT 97 (152)
T ss_dssp TTCBEEEEECSBCSSSBH---HHHHHHHHHSTTTTTSCEEEEES
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHhcccccCCCEEEEec
Confidence 467999999988777664 234555555211 2444554443
No 312
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=36.69 E-value=73 Score=19.49 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=23.5
Q ss_pred cC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HS-PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~-p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.. |+++|+|-...+.|. ..+.+.+++.......||++|.
T Consensus 50 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~ii~~s~ 89 (136)
T 3hdv_A 50 QKRIGLMITDLRMQPESG---LDLIRTIRASERAALSIIVVSG 89 (136)
T ss_dssp CTTEEEEEECSCCSSSCH---HHHHHHHHTSTTTTCEEEEEES
T ss_pred CCCCcEEEEeccCCCCCH---HHHHHHHHhcCCCCCCEEEEeC
Confidence 44 899999988877764 2344445443113455665554
No 313
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=36.24 E-value=43 Score=25.15 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=26.2
Q ss_pred CCEEEEeCCCCCCC-----HH---------------HHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 45 PSLVILDEPTSGLD-----PV---------------LANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 45 p~lliLDEPt~gLD-----~~---------------~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
-+++++|=|.+|+- |. .+..+++.+.++.+.|..++++|+.+
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 48999999988753 21 12345555555545577788877643
No 314
>4hbz_A Putative phosphohistidine phosphatase, SIXA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HP_PGM_LIKE; HET: PGE; 1.55A {Nakamurella multipartita}
Probab=36.18 E-value=42 Score=23.48 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 63 NIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 63 ~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
..+.+.++++..+..++++|.|++..
T Consensus 99 ~~~l~~i~~~~~~~~~vllvGHnP~l 124 (186)
T 4hbz_A 99 DEILAEVAAVPADASTVLVVGHAPTI 124 (186)
T ss_dssp HHHHHHHHTSCTTCSEEEEEECTTHH
T ss_pred HHHHHHHHhccCCCCeeeecccCCCH
Confidence 45667777766667899999999854
No 315
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=35.98 E-value=74 Score=19.34 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=24.6
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc-EEEEEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~-tviivtH~ 85 (123)
-..|+++|+|--..+.|- ..+.+.+++...... .|+++++.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~~~~~l~~~~~~~~~ii~ls~~~ 87 (130)
T 1dz3_A 46 EKRPDILLLDIIMPHLDG---LAVLERIRAGFEHQPNVIMLTAFG 87 (130)
T ss_dssp HHCCSEEEEESCCSSSCH---HHHHHHHHHHCSSCCEEEEEEETT
T ss_pred cCCCCEEEEecCCCCCCH---HHHHHHHHhcCCCCCcEEEEecCC
Confidence 357999999988777764 234555555212233 44455554
No 316
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=35.90 E-value=56 Score=19.83 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=24.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
..|+++|+|-...+.|- ..+.+.+++.. ....||++|...+
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~~~ 85 (135)
T 3eqz_A 45 NKQDIIILDLMMPDMDG---IEVIRHLAEHK-SPASLILISGYDS 85 (135)
T ss_dssp CTTEEEEEECCTTTTHH---HHHHHHHHHTT-CCCEEEEEESSCH
T ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHhCC-CCCCEEEEEeccc
Confidence 34999999987766543 33455555433 3445565555443
No 317
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=35.83 E-value=79 Score=19.63 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=23.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l-~~~g~tviivtH 84 (123)
..|+++|+|--..+.|. ..+.+.+++. ...+..||++|.
T Consensus 51 ~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~pii~ls~ 90 (147)
T 2zay_A 51 THPHLIITEANMPKISG---MDLFNSLKKNPQTASIPVIALSG 90 (147)
T ss_dssp HCCSEEEEESCCSSSCH---HHHHHHHHTSTTTTTSCEEEEES
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHcCcccCCCCEEEEeC
Confidence 57999999988777764 2344445441 112445555554
No 318
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=35.75 E-value=28 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
..+.+++++||-=.= +. +.+.+..+.+.|+.||+...+.+
T Consensus 89 ~~~~DvIlIDEaQFf--k~----~ve~~~~L~~~gk~VI~~GL~~D 128 (195)
T 1w4r_A 89 ALGVAVIGIDEGQFF--PD----IVEFCEAMANAGKTVIVAALDGT 128 (195)
T ss_dssp HHTCSEEEESSGGGC--TT----HHHHHHHHHHTTCEEEEEEESBC
T ss_pred ccCCCEEEEEchhhh--HH----HHHHHHHHHHCCCeEEEEecccc
Confidence 467899999998543 22 44455666667999999999864
No 319
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=35.44 E-value=52 Score=24.91 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 54 TSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 54 t~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
..++|+.....+.+.|.++.++|.-|++|+
T Consensus 66 ~~~ld~~~i~~la~~I~~l~~~G~~vviV~ 95 (281)
T 3nwy_A 66 QVGLDPDVVAQVARQIADVVRGGVQIAVVI 95 (281)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 378999999999999999988887666655
No 320
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.28 E-value=78 Score=19.45 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=23.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCc-EEEEEeCC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQ-TIIITTHY 85 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~-tviivtH~ 85 (123)
..|+++|+|--..+.|- ..+.+.+++... .+. .|+++++.
T Consensus 61 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDG---REVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp CCCSEEEECSCCSSSCH---HHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhCcccCCCeEEEEeCCC
Confidence 67999999988877764 234444444221 223 44455543
No 321
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=35.13 E-value=80 Score=19.49 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=24.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|-...+.|.. .+.+.+++.. .+..||++|-
T Consensus 47 ~~~~dlvi~d~~l~~~~g~---~~~~~l~~~~-~~~~ii~ls~ 85 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGM---DILREIKKIT-PHMAVIILTG 85 (143)
T ss_dssp TTTCCEEEEESCCSSSCHH---HHHHHHHHHC-TTCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCcHH---HHHHHHHHhC-CCCeEEEEEC
Confidence 3589999999888777652 3455555533 2444554443
No 322
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=35.09 E-value=25 Score=24.45 Aligned_cols=45 Identities=20% Similarity=0.128 Sum_probs=30.7
Q ss_pred hcCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 42 LHSPSLVILDEPTS----GLDPVLANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 42 ~~~p~lliLDEPt~----gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
..+|+++++|--+. .-+.....++...+..++++ |.++++++|-.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 46899999996431 12444455666667776655 99999999854
No 323
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=35.05 E-value=78 Score=23.32 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=33.0
Q ss_pred HHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 32 VRRVSIAVTLL---HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 32 rqrv~iaraL~---~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
.+|+++..||. .+-++++.|+- .++..-.+.+.++|+.+.-. +.++|++..
T Consensus 104 ~rrlAl~sALs~k~~~~~LvVvd~~--~~~~~KTK~~~~~L~~l~~~~~~~LiV~~~ 158 (225)
T 1dmg_A 104 MKKLALRSALSVKYRENKLLVLDDL--KLERPKTKSLKEILQNLQLSDKKTLIVLPW 158 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEESCC--CCSSCCHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeec--ccCCCCHHHHHHHHHHcCCCCCCEEEEECC
Confidence 37788888885 46689999975 44555556778888877533 334444333
No 324
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=35.05 E-value=24 Score=29.24 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=33.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.||+++++|-+.+. .+.+...+.++.+.|..++++..+++..
T Consensus 213 ~en~~Ill~d~~Is~-----~~~l~~~le~i~~~g~~lvii~~~I~~~ 255 (543)
T 1we3_A 213 LEDAFILIVEKKVSN-----VRELLPILEQVAQTGKPLLIIAEDVEGE 255 (543)
T ss_dssp EEEEEEEEESSCBCC-----HHHHHHHHHHHHTTTCCEEEEESCBCHH
T ss_pred ecCceEEEECCCcCC-----HHHHHHHHHHHHhcCCCEEEEcCCccHH
Confidence 478999999998764 3446777888777799999998877543
No 325
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=34.94 E-value=59 Score=20.11 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=19.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-.+|+++|+|-...+.|. ..+.+.+++... .+..||++|-
T Consensus 44 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 44 HHHPDLVILDMDIIGENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHCCSEEEEETTC---------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred cCCCCEEEEeCCCCCCcH---HHHHHHHHcCcccCCCCEEEEec
Confidence 368999999977655442 234444554331 2344554443
No 326
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=34.93 E-value=82 Score=21.31 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=24.0
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 42 ~~~dlvllD~~lp~~~g~---~~~~~lr~~~-~~~~ii~lt~ 79 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGY---EICRMIKETR-PETWVILLTL 79 (220)
T ss_dssp SCCSEEEEESBCSSSBHH---HHHHHHHHHC-TTSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCcEEEEEc
Confidence 789999999877776642 3455555533 2445555543
No 327
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=34.83 E-value=87 Score=19.86 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=24.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEe
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITT 83 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivt 83 (123)
-.+|+++|+|--..+.|- ..+.+.+++... .+..||++|
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 49 LTRPDLIISDVLMPEMDG---YALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp TCCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTSCEEEEE
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCcCCCCEEEEE
Confidence 467999999988877774 234555555321 244555555
No 328
>3r7a_A Phosphoglycerate mutase, putative; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE EPE; 1.84A {Bacillus anthracis}
Probab=34.72 E-value=37 Score=24.01 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhh-----CCcEEEEEeCCH
Q psy6940 63 NIFWRYLNRLSV-----QGQTIIITTHYI 86 (123)
Q Consensus 63 ~~i~~~l~~l~~-----~g~tviivtH~~ 86 (123)
.++.+.+.++.. .+.+|++|||-.
T Consensus 156 ~R~~~~l~~l~~~~~~~~~~~vlvVsHg~ 184 (237)
T 3r7a_A 156 TRIKAEIDKISEEAAKDGGGNVLVVVHGL 184 (237)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEcCHH
Confidence 345556655532 478999999964
No 329
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=34.56 E-value=78 Score=19.44 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=23.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
..|+++|+|--..+.|-. .+.+.+++. ..+..||++|
T Consensus 59 ~~~dlvilD~~l~~~~g~---~~~~~l~~~-~~~~~ii~ls 95 (138)
T 2b4a_A 59 STCDLLIVSDQLVDLSIF---SLLDIVKEQ-TKQPSVLILT 95 (138)
T ss_dssp GSCSEEEEETTCTTSCHH---HHHHHHTTS-SSCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhh-CCCCCEEEEE
Confidence 579999999887777642 334444431 1255666666
No 330
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=34.49 E-value=46 Score=27.45 Aligned_cols=48 Identities=17% Similarity=0.418 Sum_probs=34.8
Q ss_pred hcCCCEEEEeCC-------------CCCCCHH------HHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEP-------------TSGLDPV------LANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEP-------------t~gLD~~------~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+|+++++|-| .+..+.- .++.+...+.++.+.|..++++.-+++..
T Consensus 232 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~ 298 (543)
T 1a6d_B 232 VKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDM 298 (543)
T ss_dssp EEEEEEEEESSCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHH
T ss_pred ecCCeEEEEecccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHH
Confidence 589999999999 4444432 23345777777777899999998877543
No 331
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=34.46 E-value=81 Score=19.39 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=23.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
..|+++|+|--..+.|. ..+.+.+++... .+..||++|.
T Consensus 58 ~~~dlii~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~ls~ 97 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNG---IEFLKELRDDSSFTDIEVFVLTA 97 (143)
T ss_dssp CCCSEEEEETTCTTSCH---HHHHHHHTTSGGGTTCEEEEEES
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHcCccccCCcEEEEeC
Confidence 57999999987777664 234444444321 3455555554
No 332
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=34.45 E-value=78 Score=19.19 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=24.3
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 41 LLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 41 L~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
--.+|+++|+|=-..+.|- -.+.+.+++... .+..||++|-
T Consensus 43 ~~~~~dlvllD~~~p~~~g---~~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 43 SEFTPDLIVLXIMMPVMDG---FTVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp TTBCCSEEEECSCCSSSCH---HHHHHHHHTSTTTTTSCEEEEES
T ss_pred HhcCCCEEEEeccCCCCcH---HHHHHHHHhcccccCCCEEEEec
Confidence 3468999999987777774 234444443221 2445555553
No 333
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=34.03 E-value=1.1e+02 Score=20.75 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 49 ~~~~dlvllD~~l~~~~g~---~~~~~l~~~~-~~~~ii~lt~ 87 (233)
T 1ys7_A 49 ENRPDAIVLDINMPVLDGV---SVVTALRAMD-NDVPVCVLSA 87 (233)
T ss_dssp HSCCSEEEEESSCSSSCHH---HHHHHHHHTT-CCCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEEc
Confidence 4689999999877777642 3445555432 2445555553
No 334
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM homolog; 1.69A {Bacillus stearothermophilus} SCOP: c.60.1.1 PDB: 1h2f_A* 1ebb_A
Probab=34.02 E-value=41 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhh--CCcEEEEEeCCHH
Q psy6940 63 NIFWRYLNRLSV--QGQTIIITTHYIE 87 (123)
Q Consensus 63 ~~i~~~l~~l~~--~g~tviivtH~~~ 87 (123)
+++.+.+.++.+ .+.+|++|||..-
T Consensus 127 ~R~~~~l~~l~~~~~~~~vlvVsHg~~ 153 (207)
T 1h2e_A 127 QRALEAVQSIVDRHEGETVLIVTHGVV 153 (207)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEcCHHH
Confidence 345555666543 3679999999753
No 335
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=33.91 E-value=89 Score=19.67 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=24.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..|+++|+|-...+.+.. .+.+.+++.. .+..||++|.
T Consensus 46 ~~~dliild~~l~~~~g~---~~~~~l~~~~-~~~pii~ls~ 83 (155)
T 1qkk_A 46 DFAGIVISDIRMPGMDGL---ALFRKILALD-PDLPMILVTG 83 (155)
T ss_dssp TCCSEEEEESCCSSSCHH---HHHHHHHHHC-TTSCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhhC-CCCCEEEEEC
Confidence 579999999887776642 3455555532 2455555554
No 336
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=33.88 E-value=83 Score=19.31 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=24.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---hCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLS---VQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~---~~g~tviivtH 84 (123)
..|+++|+|--..+.|- ..+.+.+++.. .....||++|.
T Consensus 59 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~~~ii~~t~ 100 (146)
T 3ilh_A 59 RWPSIICIDINMPGING---WELIDLFKQHFQPMKNKSIVCLLSS 100 (146)
T ss_dssp CCCSEEEEESSCSSSCH---HHHHHHHHHHCGGGTTTCEEEEECS
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHHhhhhccCCCeEEEEeC
Confidence 67999999988877775 23555565531 23455555554
No 337
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.77 E-value=86 Score=19.45 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|- ..+.+.+++.. ....||++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g---~~l~~~l~~~~-~~~~ii~ls~ 84 (137)
T 3cfy_A 46 RSKPQLIILDLKLPDMSG---EDVLDWINQND-IPTSVIIATA 84 (137)
T ss_dssp HHCCSEEEECSBCSSSBH---HHHHHHHHHTT-CCCEEEEEES
T ss_pred hcCCCEEEEecCCCCCCH---HHHHHHHHhcC-CCCCEEEEEe
Confidence 358999999987777664 23444454422 3445555554
No 338
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=33.37 E-value=1.1e+02 Score=20.56 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEE-EeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII-TTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvii-vtH 84 (123)
-..|+++|+|--..+.|- -.+.+.+++.. ....||+ +.+
T Consensus 49 ~~~~dlvllD~~lp~~~g---~~~~~~lr~~~-~~~~ii~ls~~ 88 (215)
T 1a04_A 49 SLDPDLILLDLNMPGMNG---LETLDKLREKS-LSGRIVVFSVS 88 (215)
T ss_dssp HHCCSEEEEETTSTTSCH---HHHHHHHHHSC-CCSEEEEEECC
T ss_pred hcCCCEEEEeCCCCCCcH---HHHHHHHHHhC-CCCcEEEEECC
Confidence 358999999987777764 23444454432 2344444 444
No 339
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=33.35 E-value=97 Score=19.92 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=42.6
Q ss_pred HHHHHh-cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 37 IAVTLL-HSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 37 iaraL~-~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
+...+. .+++.+|+| .-..-+|......+.+..+.++..|..++++.=.++...
T Consensus 34 ll~~i~~~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~l~Gi~p~va~ 89 (123)
T 3zxn_A 34 LLHNITGVAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVAI 89 (123)
T ss_dssp HHHHHTSSCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred HHHHHHhcCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 334444 478999999 778899999999999999888777888888876666543
No 340
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase; 1.90A {Escherichia coli} PDB: 1ujb_A
Probab=33.27 E-value=45 Score=22.27 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhh-CCcEEEEEeCCHH
Q psy6940 63 NIFWRYLNRLSV-QGQTIIITTHYIE 87 (123)
Q Consensus 63 ~~i~~~l~~l~~-~g~tviivtH~~~ 87 (123)
.++.+.+.++.+ .+.+|++|+|..-
T Consensus 86 ~r~~~~l~~~~~~~~~~vlvV~H~~~ 111 (161)
T 1ujc_A 86 GLVSAYLQALTNEGVASVLVISHLPL 111 (161)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTH
T ss_pred HHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 456666666543 5779999999764
No 341
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=33.19 E-value=85 Score=19.25 Aligned_cols=41 Identities=27% Similarity=0.220 Sum_probs=24.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~ 85 (123)
-..|+++|+|--..+.|.. .+.+.+++... ....||++|..
T Consensus 49 ~~~~dlii~d~~l~~~~g~---~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 49 KGFSGVVLLDIMMPGMDGW---DTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp TCCCEEEEEESCCSSSCHH---HHHHHHHHTTCCTTEEEEEEECT
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCCEEEEECC
Confidence 4679999999887776642 34555554211 24566666553
No 342
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=33.17 E-value=78 Score=18.77 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=23.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++++|--..+.|-. .+.+.+++.. ....||++|.
T Consensus 42 ~~~~dlil~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 80 (121)
T 2pl1_A 42 EHIPDIAIVDLGLPDEDGL---SLIRRWRSND-VSLPILVLTA 80 (121)
T ss_dssp HSCCSEEEECSCCSSSCHH---HHHHHHHHTT-CCSCEEEEES
T ss_pred ccCCCEEEEecCCCCCCHH---HHHHHHHhcC-CCCCEEEEec
Confidence 3689999999877776642 3444454422 2344554443
No 343
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=33.13 E-value=1.1e+02 Score=20.58 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 44 ~~~~dlvllD~~l~~~~g~---~~~~~lr~~~-~~~~ii~ls~ 82 (225)
T 1kgs_A 44 NEPFDVVILDIMLPVHDGW---EILKSMRESG-VNTPVLMLTA 82 (225)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHTT-CCCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEeC
Confidence 4689999999887777642 3445555432 2444555443
No 344
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=32.91 E-value=33 Score=22.43 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 26 WTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.-+.|+. ++..+--.+|+++|+|=-.-++|-. .+.+.++ +.+..||++|-
T Consensus 38 ~a~~g~e---Al~~~~~~~~DlvllDi~mP~~~G~---el~~~lr---~~~ipvI~lTa 87 (123)
T 2lpm_A 38 TASRMQE---ALDIARKGQFDIAIIDVNLDGEPSY---PVADILA---ERNVPFIFATG 87 (123)
T ss_dssp CSCCHHH---HHHHHHHCCSSEEEECSSSSSCCSH---HHHHHHH---HTCCSSCCBCT
T ss_pred EECCHHH---HHHHHHhCCCCEEEEecCCCCCCHH---HHHHHHH---cCCCCEEEEec
Confidence 4445552 2333334789999999888888753 2444444 34666666653
No 345
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=32.91 E-value=63 Score=22.96 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh----------hCCcEEEEEeCC
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLS----------VQGQTIIITTHY 85 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~----------~~g~tviivtH~ 85 (123)
++.++++||.- .+++..+..+.+.+.+-. ..+..+|++|+.
T Consensus 100 ~~~~l~lDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 100 DGGTLFLDELA-TAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TTSEEEEESGG-GSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CCcEEEEechH-hcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 56899999975 577777777877776521 124568888875
No 346
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=32.72 E-value=44 Score=26.67 Aligned_cols=56 Identities=11% Similarity=0.028 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHh--cCCC--EEEEeCCCC---CC---C-HHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 27 TVGGQVRRVSIAVTLL--HSPS--LVILDEPTS---GL---D-PVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 27 LSgGqrqrv~iaraL~--~~p~--lliLDEPt~---gL---D-~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+|-.+ -.+.++.+. .+|+ ++++|--.. +- + ......+...|+.++++ |++||+++|
T Consensus 291 ~s~~~--i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsq 358 (444)
T 3bgw_A 291 QSVNY--IWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQ 358 (444)
T ss_dssp CBHHH--HHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCHHH--HHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 45444 233344443 4799 999996532 11 1 12333455666677665 999999999
No 347
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=32.64 E-value=53 Score=21.93 Aligned_cols=38 Identities=8% Similarity=-0.095 Sum_probs=23.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|-...+.| .. +.+.+++.. ....||++|.
T Consensus 50 ~~~~dlvl~D~~mp~~~--g~--l~~~~~~~~-~~~~ii~lt~ 87 (196)
T 1qo0_D 50 DVPVDVVFTSIFQNRHH--DE--IAALLAAGT-PRTTLVALVE 87 (196)
T ss_dssp SSCCSEEEEECCSSTHH--HH--HHHHHHHSC-TTCEEEEEEC
T ss_pred CCCCCEEEEeCCCCccc--hH--HHHHHhccC-CCCCEEEEEc
Confidence 35899999998776655 21 555555432 3455555544
No 348
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=32.48 E-value=11 Score=27.36 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=26.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+++++++||. ..++......+.+.+.+. ..+..+|+++++..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVS 143 (319)
T ss_dssp CCCEEEEEETG-GGSCHHHHHTTGGGTSSS-SSSEEEEEEESCGG
T ss_pred CCceEEEEeCC-CcCCHHHHHHHHHHHHhc-CCCCeEEEEeCChh
Confidence 46899999996 345665555555444331 13566777887664
No 349
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=32.28 E-value=91 Score=19.29 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=23.4
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH 84 (123)
-.+|+++|+|--..+.|. ..+.+.+++.. ..+..||++|.
T Consensus 49 ~~~~dlii~D~~l~~~~g---~~~~~~lr~~~~~~~~pii~~s~ 89 (144)
T 3kht_A 49 QAKYDLIILDIGLPIANG---FEVMSAVRKPGANQHTPIVILTD 89 (144)
T ss_dssp TCCCSEEEECTTCGGGCH---HHHHHHHHSSSTTTTCCEEEEET
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcccccCCCEEEEeC
Confidence 467999999987766654 23444454411 12445555553
No 350
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=32.23 E-value=91 Score=20.82 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=23.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|-. .+.+.+++.. .+..||++|.
T Consensus 46 ~~~~dlvl~D~~lp~~~g~---~~~~~l~~~~-~~~~ii~ls~ 84 (208)
T 1yio_A 46 PEQHGCLVLDMRMPGMSGI---ELQEQLTAIS-DGIPIVFITA 84 (208)
T ss_dssp TTSCEEEEEESCCSSSCHH---HHHHHHHHTT-CCCCEEEEES
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHhcC-CCCCEEEEeC
Confidence 3579999999877777642 3445555432 3455555554
No 351
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=31.98 E-value=1e+02 Score=19.83 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=22.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
-..|+++|+|--..+.|- ..+.+.+++.. ...||++|
T Consensus 69 ~~~~dlvilD~~l~~~~g---~~l~~~lr~~~--~~~ii~~s 105 (164)
T 3t8y_A 69 ELKPDVITMDIEMPNLNG---IEALKLIMKKA--PTRVIMVS 105 (164)
T ss_dssp HHCCSEEEECSSCSSSCH---HHHHHHHHHHS--CCEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHHhcC--CceEEEEe
Confidence 357999999987777764 23455555533 24444444
No 352
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=31.81 E-value=71 Score=27.92 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHhhC-CcEEEEEeCCHHHH
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTS----------GLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~----------gLD~~~~~~i~~~l~~l~~~-g~tviivtH~~~~~ 89 (123)
|-.+..|--+.|.+|++||--+ ..+......+...+..+... +..||.+|.+++.+
T Consensus 287 r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 4456677778899999999632 12222333444555554433 67788889877654
No 353
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=31.78 E-value=89 Score=19.04 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=22.2
Q ss_pred hcCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHhhCCcEEE-EEeC
Q psy6940 42 LHSPSLVILDEPTS-----GLDPVLANIFWRYLNRLSVQGQTII-ITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~-----gLD~~~~~~i~~~l~~l~~~g~tvi-ivtH 84 (123)
-..|+++|+|-... +.|. ..+.+.+++.. .+..|| ++.+
T Consensus 45 ~~~~dlvi~d~~~~~~~~~~~~g---~~~~~~l~~~~-~~~~ii~ls~~ 89 (140)
T 2qr3_A 45 EENPEVVLLDMNFTSGINNGNEG---LFWLHEIKRQY-RDLPVVLFTAY 89 (140)
T ss_dssp HSCEEEEEEETTTTC-----CCH---HHHHHHHHHHC-TTCCEEEEEEG
T ss_pred cCCCCEEEEeCCcCCCCCCCccH---HHHHHHHHhhC-cCCCEEEEECC
Confidence 35799999998765 5553 23455555432 234444 4444
No 354
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.68 E-value=84 Score=18.70 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-..|+++|+|-...+.|-. .+.+.+++... ....||++|.
T Consensus 43 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 43 ENKPDLILMDIQLPEISGL---EVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHCCSEEEEESBCSSSBHH---HHHHHHHHSTTTTTSCEEEEC-
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHHcCccccCCcEEEEEC
Confidence 3579999999887777642 34555554321 2445555554
No 355
>3sxu_B DNA polymerase III subunit PSI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} PDB: 1em8_B* 3gli_O*
Probab=31.61 E-value=38 Score=23.17 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=25.3
Q ss_pred CHHHHHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 6 ~~~e~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+.+..++.+|+.-+.-++|.-|-| +.+..+-.+++++|.++.--..|.. .+.+.++.+.=. .-+..++..
T Consensus 5 rrd~~LqeMGItqW~Lr~P~~L~g------~~~i~lp~~~rLliVs~~~p~~~~~---L~~dVLrsl~L~~~q~~~lt~e 75 (138)
T 3sxu_B 5 RRDWQLQQLGITQWSLRRPGALQG------EIAIAIPAHVRLVMVANDLPALTDP---LVSDVLRALTVSPDQVLQLTPE 75 (138)
T ss_dssp -----------------------------------CCTTCCEEEECSSCCCTTCH---HHHHHHHHHTCCGGGEEEECHH
T ss_pred HHHHHHHHhCCCeEEecCcccccC------CcccccCCceEEEEEeCCCCcccCH---HHHHHHHHcCCCHHHeeeeCHH
Confidence 345678899998888888988876 5566677799999999885444432 445555555422 334444444
Q ss_pred CHH
Q psy6940 85 YIE 87 (123)
Q Consensus 85 ~~~ 87 (123)
.+.
T Consensus 76 ql~ 78 (138)
T 3sxu_B 76 KIA 78 (138)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 356
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=31.42 E-value=25 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.063 Sum_probs=25.3
Q ss_pred CCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 44 SPSLVILDEPTSGLDPV----------------LANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~----------------~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
.-|++++|=|++|+-.. ....+++.+.++.+.|..++++|..+
T Consensus 156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 45999999999986431 12345555555555566788877543
No 357
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=30.84 E-value=64 Score=20.06 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=22.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++|+|--..+.|-. .+.+.+++.. ...||++|.
T Consensus 46 ~~~~dlvllD~~l~~~~g~---~l~~~l~~~~--~~~ii~ls~ 83 (136)
T 2qzj_A 46 SNKYDLIFLEIILSDGDGW---TLCKKIRNVT--TCPIVYMTY 83 (136)
T ss_dssp HCCCSEEEEESEETTEEHH---HHHHHHHTTC--CCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHccCC--CCCEEEEEc
Confidence 3689999999877666542 3444444322 444555544
No 358
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM, hydrolase; 1.76A {Bombyx mori}
Probab=30.83 E-value=55 Score=23.58 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=15.7
Q ss_pred HHHHHHHHHhh----CCcEEEEEeCCHH
Q psy6940 64 IFWRYLNRLSV----QGQTIIITTHYIE 87 (123)
Q Consensus 64 ~i~~~l~~l~~----~g~tviivtH~~~ 87 (123)
++.+.+.++.+ .+.+|++|||..-
T Consensus 168 Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 195 (263)
T 3c7t_A 168 RGEVAMQAAVNDTEKDGGNVIFIGHAIT 195 (263)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeCHHH
Confidence 44455555532 4679999999753
No 359
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=30.57 E-value=69 Score=20.15 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=18.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..|+++|+|--..+.|. ..+.+.+++.. .+..||++|.
T Consensus 49 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~ls~ 86 (154)
T 2qsj_A 49 NTVDLILLDVNLPDAEA---IDGLVRLKRFD-PSNAVALISG 86 (154)
T ss_dssp CCCSEEEECC------C---HHHHHHHHHHC-TTSEEEEC--
T ss_pred CCCCEEEEeCCCCCCch---HHHHHHHHHhC-CCCeEEEEeC
Confidence 57999999976654432 23455555432 2455665554
No 360
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=30.57 E-value=94 Score=18.93 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=22.4
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTS-GLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..|+++|+|--.. +.|.. .+.+.+++. .+..||++|.
T Consensus 53 ~~~dlii~d~~~~~~~~g~---~~~~~l~~~--~~~~ii~ls~ 90 (140)
T 3cg0_A 53 LRPDIALVDIMLCGALDGV---ETAARLAAG--CNLPIIFITS 90 (140)
T ss_dssp HCCSEEEEESSCCSSSCHH---HHHHHHHHH--SCCCEEEEEC
T ss_pred CCCCEEEEecCCCCCCCHH---HHHHHHHhC--CCCCEEEEec
Confidence 5799999997765 56642 345555554 3444454443
No 361
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ...
Probab=30.52 E-value=87 Score=21.63 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=25.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHHH
Q psy6940 45 PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEEA 89 (123)
Q Consensus 45 p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~~ 89 (123)
-..+++|= |.+......+.+.+++........|++|| +.+.+
T Consensus 50 ~~~iliD~---G~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH~ 92 (227)
T 1mqo_A 50 KGLVLVDS---SWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRI 92 (227)
T ss_dssp TEEEEESC---CSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHH
T ss_pred CeEEEEEC---CCChHHHHHHHHHHHHhcCCCceEEEeCCCCchhc
Confidence 34677773 44554445667777664334567788898 45433
No 362
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.42 E-value=36 Score=29.34 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=21.9
Q ss_pred HHHh-cCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6940 39 VTLL-HSPSLVILDEPTSGLDPVLANIFWRYLNR 71 (123)
Q Consensus 39 raL~-~~p~lliLDEPt~gLD~~~~~~i~~~l~~ 71 (123)
.++- ..+.+++|||+- .+++.....+.+.+.+
T Consensus 654 ~~~~~~~~~vl~lDEi~-~l~~~~~~~Ll~~l~~ 686 (854)
T 1qvr_A 654 EAVRRRPYSVILFDEIE-KAHPDVFNILLQILDD 686 (854)
T ss_dssp HHHHHCSSEEEEESSGG-GSCHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEEeccc-ccCHHHHHHHHHHhcc
Confidence 3443 345899999994 5788777777766653
No 363
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=30.41 E-value=18 Score=26.26 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=21.3
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRL 72 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l 72 (123)
-.+|+|++=||..+|=|....+++.+.|..+
T Consensus 69 n~n~dIvF~deE~tgadR~Mt~Rc~~kL~~L 99 (187)
T 3k7i_B 69 NYNPDIIFKDEENTGADRLMTQRCKDRLNSL 99 (187)
T ss_dssp CCCTTEEECCTTSSSGGGEECHHHHHHHHHH
T ss_pred cCCCceEecCccCCCcchhhCHHHHHHHHHH
Confidence 3589999999999886655555555444443
No 364
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=30.13 E-value=99 Score=19.03 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=23.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEE-EEeCC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII-ITTHY 85 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi-ivtH~ 85 (123)
..|+++|+|=-..+.|-. .+.+.+++.......|| ++++.
T Consensus 51 ~~~dlvllD~~mp~~~G~---~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGL---LSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp CCCSEEEECSCCSSSCHH---HHHHHHHHHSCCCSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCChH---HHHHHHHhhcCCCCCEEEEECCC
Confidence 579999999877777742 34455554222233455 44443
No 365
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=30.10 E-value=1.5e+02 Score=21.78 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=33.9
Q ss_pred cCCCEEEEeCCCCC--------CCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 43 HSPSLVILDEPTSG--------LDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 43 ~~p~lliLDEPt~g--------LD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
..-+++.+|-|-.+ -+.....++.+.++++...|.-++++-||.
T Consensus 163 ~~~~fvY~DPPY~~~~~~Y~~~f~~~d~~~L~~~l~~l~~~g~~~~lS~~d~ 214 (259)
T 1yf3_A 163 LDGDFVYVDPPYLITVADYNKFWSEDEEKDLLNLLDSLNDRGIKFGLSNVLE 214 (259)
T ss_dssp CTTEEEEECCCCTTSCCGGGGGCCHHHHHHHHHHHHHHHTTTCEEEEEEESE
T ss_pred CCCeEEEECCCCCCccchhccCCCHHHHHHHHHHHHHHhhCCCEEEEEeecC
Confidence 34468999998533 567778889999999887777888888764
No 366
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.08 E-value=1.4e+02 Score=20.76 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=23.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEE-EEeCC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTII-ITTHY 85 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tvi-ivtH~ 85 (123)
-..|+++|+|=-..+.|- -.+.+.+++.. .+..|| ++.|+
T Consensus 65 ~~~~dlvllD~~lp~~~g---~~~~~~lr~~~-~~~~ii~lt~~~ 105 (250)
T 3r0j_A 65 ETRPDAVILDVXMPGMDG---FGVLRRLRADG-IDAPALFLTARD 105 (250)
T ss_dssp HHCCSEEEEESCCSSSCH---HHHHHHHHHTT-CCCCEEEEECST
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CCCCEEEEECCC
Confidence 468999999987777774 23444454432 234444 44444
No 367
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase; 1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Probab=30.06 E-value=66 Score=23.24 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=16.0
Q ss_pred HHHHHHHHHhh----CCcEEEEEeCCHH
Q psy6940 64 IFWRYLNRLSV----QGQTIIITTHYIE 87 (123)
Q Consensus 64 ~i~~~l~~l~~----~g~tviivtH~~~ 87 (123)
++.+.+.++.. .+.+|++|||..-
T Consensus 178 R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 205 (273)
T 3d4i_A 178 RCAVSMGQIINTCPQDMGITLIVSHSSA 205 (273)
T ss_dssp HHHHHHHHHHTTSTTCCSEEEEEECTTH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEechHH
Confidence 44555666542 3679999999764
No 368
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=30.05 E-value=57 Score=23.94 Aligned_cols=12 Identities=25% Similarity=0.529 Sum_probs=10.3
Q ss_pred cCCCEEEEeCCC
Q psy6940 43 HSPSLVILDEPT 54 (123)
Q Consensus 43 ~~p~lliLDEPt 54 (123)
.+.++++|||..
T Consensus 102 ~~~kIiiLDEad 113 (212)
T 1tue_A 102 TDTKVAMLDDAT 113 (212)
T ss_dssp TTCSSEEEEEEC
T ss_pred CCCCEEEEECCC
Confidence 468999999986
No 369
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=29.96 E-value=21 Score=23.29 Aligned_cols=45 Identities=13% Similarity=-0.029 Sum_probs=24.3
Q ss_pred cCCCEEEEeCCCCCCCH---HHHHHHHHHHHHHhhC-CcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDP---VLANIFWRYLNRLSVQ-GQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~---~~~~~i~~~l~~l~~~-g~tviivtH~~~ 87 (123)
.+|.++++||--.-.+. .....+.+.+..+... +..+|++++...
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 45779999997432211 1112234444444444 567777777654
No 370
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1, signaling protein, low PH, alternative splicing, cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus} PDB: 2ikq_A 2h0q_A
Probab=29.91 E-value=51 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=16.3
Q ss_pred HHHHHHHHHh----hCCcEEEEEeCCHHH
Q psy6940 64 IFWRYLNRLS----VQGQTIIITTHYIEE 88 (123)
Q Consensus 64 ~i~~~l~~l~----~~g~tviivtH~~~~ 88 (123)
++...+.++. ..+.+|++|||..-.
T Consensus 169 R~~~~l~~l~~~~~~~~~~vlvVsHg~~i 197 (264)
T 3mbk_A 169 RSFQVTKEIISECKSKGNNILIVAHASSL 197 (264)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEECTTHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEEecHHHH
Confidence 4455555543 247899999997643
No 371
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A
Probab=29.55 E-value=1e+02 Score=22.73 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 52 EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 52 EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+|....|+...+.+-+.+....+.|..||+.-|..
T Consensus 61 ~~~~~~~~~~l~~~~~~v~~~~~~gi~vild~h~~ 95 (305)
T 1h1n_A 61 SMTGSPDPNYLADLIATVNAITQKGAYAVVDPHNY 95 (305)
T ss_dssp STTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEecccc
Confidence 45667899888888888888778899999999964
No 372
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=29.48 E-value=57 Score=20.19 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=21.8
Q ss_pred cCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSG--LDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~g--LD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..|+++|+|--..+ .|- ..+.+.+++.. .+..||++|.
T Consensus 49 ~~~dlvi~D~~l~~~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 88 (136)
T 3kto_A 49 DDAIGMIIEAHLEDKKDSG---IELLETLVKRG-FHLPTIVMAS 88 (136)
T ss_dssp TTEEEEEEETTGGGBTTHH---HHHHHHHHHTT-CCCCEEEEES
T ss_pred cCCCEEEEeCcCCCCCccH---HHHHHHHHhCC-CCCCEEEEEc
Confidence 56999999977655 443 23455555433 2444555444
No 373
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=29.23 E-value=44 Score=26.41 Aligned_cols=55 Identities=7% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 31 QVRRVSIAVTLLHSPSLVILDEPTS-GLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 31 qrqrv~iaraL~~~p~lliLDEPt~-gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+....+...+.+++++|+..... ++.+.. ..+.+.++ +.++.+|++.+..+..
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC---
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECccch
Confidence 7777788888888899888876654 455543 34554443 3578888888866654
No 374
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyceromutase, decode, SBRI, niaid, UWPPG, glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia pseudomallei} SCOP: c.60.1.1 PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A* 3lnt_A
Probab=29.12 E-value=54 Score=23.48 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=16.7
Q ss_pred HHHHHHHHHHh----hCCcEEEEEeCCHH
Q psy6940 63 NIFWRYLNRLS----VQGQTIIITTHYIE 87 (123)
Q Consensus 63 ~~i~~~l~~l~----~~g~tviivtH~~~ 87 (123)
.++...+.++. ..+.+|++|||..-
T Consensus 165 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~~ 193 (257)
T 3gp3_A 165 ARVLPLWNESIAPAVKAGKQVLIAAHGNS 193 (257)
T ss_dssp HHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcHH
Confidence 45556665542 35789999999653
No 375
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=28.85 E-value=1.3e+02 Score=29.33 Aligned_cols=54 Identities=11% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHH-------------H----HHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 30 GQVRRVSIAVTLL--HSPSLVILDEPTSGLDPV-------------L----ANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 30 Gqrqrv~iaraL~--~~p~lliLDEPt~gLD~~-------------~----~~~i~~~l~~l~~~g~tviivtH 84 (123)
++ +-+.+++.++ ..|+++++||-.+-+... . .+.+.+++....+.+.+||++-.
T Consensus 1490 ~E-~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq 1562 (2050)
T 3cmu_A 1490 GE-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1562 (2050)
T ss_dssp HH-HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HH-HHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEcc
Confidence 44 5566676664 689999999974333211 1 12244444444445777777654
No 376
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=28.82 E-value=98 Score=18.56 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=23.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-..|+++++|--..+.|-. .+.+.+++... ....||++|.
T Consensus 47 ~~~~dlvi~D~~l~~~~g~---~l~~~l~~~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 47 AGGYGFVISDWNMPNMDGL---ELLKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp TCCCCEEEEESCCSSSCHH---HHHHHHHC--CCTTCCEEEEES
T ss_pred hcCCCEEEEeCCCCCCCHH---HHHHHHHhhcccCCCcEEEEec
Confidence 3579999999888777752 34444544211 2344555544
No 377
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.65 E-value=1.1e+02 Score=25.85 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=28.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh----------hCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLS----------VQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~----------~~g~tviivtH 84 (123)
..+.+++|||.- -+++.....+.+.+.+-. ..+..+|++|+
T Consensus 578 ~~~~vl~lDEi~-~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 578 KPYSVVLLDAIE-KAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CSSSEEEEECGG-GSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred CCCeEEEEeCcc-ccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 356899999984 567877777888776521 01346777777
No 378
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=28.63 E-value=76 Score=21.03 Aligned_cols=40 Identities=10% Similarity=-0.034 Sum_probs=23.1
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 41 LLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 41 L~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
--..|+++|+|=-..+.|- -.+.+.+++.. .+..||++|.
T Consensus 48 ~~~~~dlvl~D~~lp~~~g---~~~~~~l~~~~-~~~~ii~lt~ 87 (184)
T 3rqi_A 48 GAEKFEFITVXLHLGNDSG---LSLIAPLCDLQ-PDARILVLTG 87 (184)
T ss_dssp TTSCCSEEEECSEETTEES---HHHHHHHHHHC-TTCEEEEEES
T ss_pred hhCCCCEEEEeccCCCccH---HHHHHHHHhcC-CCCCEEEEeC
Confidence 3467999999976655553 23445555533 2444554443
No 379
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=28.45 E-value=90 Score=22.71 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 54 TSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 54 t~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
..++|+...+.+.+.+.++.++|.-+++|+
T Consensus 26 ~~~~~~~~i~~la~~i~~l~~~G~~vviV~ 55 (243)
T 3ek6_A 26 DYGIDPKVINRLAHEVIEAQQAGAQVALVI 55 (243)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 457999999999999999988876655554
No 380
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=28.43 E-value=58 Score=27.01 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=32.4
Q ss_pred CCCEEEEeCCC--------------CCCCH-----HHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 44 SPSLVILDEPT--------------SGLDP-----VLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 44 ~p~lliLDEPt--------------~gLD~-----~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
+|+++++|-|. +.-|. ..++.+...+.++.+.|..++++.-+++.
T Consensus 241 n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~ 304 (559)
T 3p9d_A 241 NVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDD 304 (559)
T ss_dssp SBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCG
T ss_pred CceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCH
Confidence 99999999885 22332 22334777788888779999999887653
No 381
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=28.41 E-value=1.1e+02 Score=18.88 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=24.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
-..|+++|+|--..+.|-. .+.+.+++... ....||++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~ls~ 85 (138)
T 3c3m_A 45 ATPPDLVLLDIMMEPMDGW---ETLERIKTDPATRDIPVLMLTA 85 (138)
T ss_dssp HSCCSEEEEESCCSSSCHH---HHHHHHHHSTTTTTSCEEEEES
T ss_pred ccCCCEEEEeCCCCCCCHH---HHHHHHHcCcccCCCCEEEEEC
Confidence 3579999999887777742 34455554321 2445665554
No 382
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=28.38 E-value=80 Score=21.20 Aligned_cols=34 Identities=6% Similarity=-0.033 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhCCcEEEEEeCCH-HHHHh-hccee
Q psy6940 63 NIFWRYLNRLSVQGQTIIITTHYI-EEARQ-ANTVF 96 (123)
Q Consensus 63 ~~i~~~l~~l~~~g~tviivtH~~-~~~~~-~d~v~ 96 (123)
..+.+.++..++.|..+|.+|.+. ..+.. ||.++
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l 128 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLII 128 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEE
Confidence 345666777677788888888754 44555 88777
No 383
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=28.35 E-value=90 Score=25.77 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=33.7
Q ss_pred hcCCCEEEEeCCC-------------CCCCH------HHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPT-------------SGLDP------VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt-------------~gLD~------~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+|+++++|-|. +..+. ..++.+.+.+.++.+.|..+|++.-.++..
T Consensus 236 ~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dl 302 (550)
T 3p9d_G 236 FNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDL 302 (550)
T ss_dssp CSSCCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHH
T ss_pred ccCceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHH
Confidence 7899999999994 22321 123446667777777799999998876543
No 384
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.14 E-value=77 Score=23.58 Aligned_cols=43 Identities=21% Similarity=0.401 Sum_probs=29.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.+++++++||.- .+.......+...+.+.. ....+|++++...
T Consensus 109 ~~~~viiiDe~~-~l~~~~~~~L~~~le~~~-~~~~~il~~n~~~ 151 (340)
T 1sxj_C 109 KGFKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH 151 (340)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhcCC-CCeEEEEEecCcc
Confidence 358999999974 355666677777776543 3556777777654
No 385
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=28.04 E-value=93 Score=22.56 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 55 SGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 55 ~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.++|+...+.+.+.|.++.+.|.-+++|+
T Consensus 25 ~~~~~~~i~~~a~~I~~l~~~G~~vvlV~ 53 (240)
T 4a7w_A 25 FGIDIHVLDHIAKEIKSLVENDIEVGIVI 53 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 47999999999999999888876555554
No 386
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=28.04 E-value=80 Score=22.57 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC---CcEEEEEeCCHHH
Q psy6940 31 QVRRVSIAVTLL---HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ---GQTIIITTHYIEE 88 (123)
Q Consensus 31 qrqrv~iaraL~---~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~---g~tviivtH~~~~ 88 (123)
++.+-.+.+++. .+++++|+--+.+.+.... ..+.+.+.+.... +.++|+++|..+.
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 445556666663 8898888776666655443 4455666654322 6799999996544
No 387
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=27.89 E-value=93 Score=22.54 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=30.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-----------------CCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-----------------QGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-----------------~g~tviivtH~~~ 87 (123)
.++.++++||-- .+++.....+...+.+... .+..+|.+|+...
T Consensus 89 ~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~ 149 (324)
T 1hqc_A 89 EEGDILFIDEIH-RLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG 149 (324)
T ss_dssp CTTCEEEETTTT-SCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS
T ss_pred cCCCEEEEECCc-ccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc
Confidence 578999999974 5777777777777765320 1356778887654
No 388
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.80 E-value=1.1e+02 Score=18.86 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=24.7
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH 84 (123)
-..|+++|+|=-..+.|- -.+.+.+++.. .....||++|.
T Consensus 46 ~~~~dlvl~D~~lp~~~g---~~~~~~lr~~~~~~~~pii~~t~ 86 (136)
T 3t6k_A 46 KNLPDALICDVLLPGIDG---YTLCKRVRQHPLTKTLPILMLTA 86 (136)
T ss_dssp HSCCSEEEEESCCSSSCH---HHHHHHHHHSGGGTTCCEEEEEC
T ss_pred hCCCCEEEEeCCCCCCCH---HHHHHHHHcCCCcCCccEEEEec
Confidence 478999999988877774 23455555432 22444555443
No 389
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.77 E-value=1.1e+02 Score=18.67 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=24.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-hhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l-~~~g~tviivtH 84 (123)
-..|+++|+|--..+.|. ..+.+.+++. ...+..||++|.
T Consensus 52 ~~~~dlii~d~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 52 TVKPDVVMLDLMMVGMDG---FSICHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HTCCSEEEEETTCTTSCH---HHHHHHHHTSTTTTTSEEEEEES
T ss_pred hcCCCEEEEecccCCCcH---HHHHHHHHhCccccCCcEEEEeC
Confidence 367999999987777664 2344445442 112455665554
No 390
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=27.77 E-value=1e+02 Score=22.36 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=24.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 51 DEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 51 DEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
|+.+.++|+.....+.+.|..+.+.|.-+|+|+
T Consensus 21 ~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVh 53 (252)
T 1z9d_A 21 GEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVI 53 (252)
T ss_dssp CSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 334567899999999999999887776555554
No 391
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia coli} SCOP: c.60.1.1 PDB: 1e59_A*
Probab=27.74 E-value=68 Score=22.81 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=16.7
Q ss_pred HHHHHHHHHH-Hh---hCCcEEEEEeCCH
Q psy6940 62 ANIFWRYLNR-LS---VQGQTIIITTHYI 86 (123)
Q Consensus 62 ~~~i~~~l~~-l~---~~g~tviivtH~~ 86 (123)
..++...+.+ +. ..+.+|++|||-.
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 185 (249)
T 1e58_A 157 IDRVIPYWNETILPRMKSGERVIIAAHGN 185 (249)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcChH
Confidence 4456666655 33 2577999999965
No 392
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.30A {Borrelia burgdorferi}
Probab=27.66 E-value=58 Score=23.69 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=15.9
Q ss_pred HHHHHHHHHHh----hCCcEEEEEeCCH
Q psy6940 63 NIFWRYLNRLS----VQGQTIIITTHYI 86 (123)
Q Consensus 63 ~~i~~~l~~l~----~~g~tviivtH~~ 86 (123)
.++.+.+.++. ..+.+|++|||-.
T Consensus 183 ~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 210 (274)
T 4emb_A 183 ARVIPYWTDEIAKEVLEGKKVIVAAHGN 210 (274)
T ss_dssp HHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEeCHH
Confidence 44555555542 3578999999955
No 393
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=27.61 E-value=73 Score=24.91 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 53 PTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 53 Pt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
|..++|+.....+.+.|..+++.|.-||+|++-
T Consensus 19 ~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gG 51 (367)
T 2j5v_A 19 GSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSG 51 (367)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 446799999999999999998888878888763
No 394
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=27.59 E-value=1.4e+02 Score=24.58 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=32.4
Q ss_pred HHHHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeCCH
Q psy6940 34 RVSIAVTLLHS-PSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYI 86 (123)
Q Consensus 34 rv~iaraL~~~-p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH~~ 86 (123)
.+++..+|+.. |+++++=|- ..|.. .+.+.+++.. .++.+||+++--.
T Consensus 278 ~LAl~agLA~g~ad~ilIPE~--p~~l~---~i~~~i~~r~~~k~~~IIvVaEGa 327 (487)
T 2hig_A 278 FIAAQAAVASAQANICLVPEN--PISEQ---EVMSLLERRFCHSRSCVIIVAEGF 327 (487)
T ss_dssp HHHHHHHHHHTCCSEEECTTS--CCCHH---HHHHHHHHHTTSCSEEEEEEETTT
T ss_pred HHHHHHHHhhCCCCEEEeCCC--CCCHH---HHHHHHHHHHhcCCcEEEEEeCCC
Confidence 57899999998 999999543 33443 4566665543 3477788777543
No 395
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=27.49 E-value=1.1e+02 Score=18.77 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=22.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..|+++|+|--..+.|- ..+.+.+++.. ....||++|..
T Consensus 54 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~~ 92 (143)
T 2qv0_A 54 NKVDAIFLDINIPSLDG---VLLAQNISQFA-HKPFIVFITAW 92 (143)
T ss_dssp CCCSEEEECSSCSSSCH---HHHHHHHTTST-TCCEEEEEESC
T ss_pred CCCCEEEEecCCCCCCH---HHHHHHHHccC-CCceEEEEeCC
Confidence 67999999987766663 23344444321 23445555544
No 396
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=27.47 E-value=1.8e+02 Score=22.31 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CcEEEEEeC
Q psy6940 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ--GQTIIITTH 84 (123)
Q Consensus 34 rv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~--g~tviivtH 84 (123)
.++++.+|+..|+++++=| ...|. +.+.+.+++..++ +..||+++-
T Consensus 175 ~lA~~a~la~ga~~iliPE--~~~~~---~~~~~~i~~~~~~g~~~~iivvaE 222 (319)
T 4a3s_A 175 DIALWAGLAGGAESILIPE--ADYDM---HEIIARLKRGHERGKKHSIIIVAE 222 (319)
T ss_dssp HHHHHHHHHHTCSEEEBTT--BCCCH---HHHHHHHHHHHTTTCCCEEEEEET
T ss_pred HHHHHHHhccCCCEEEecC--CCCCH---HHHHHHHHHHHHcCCCceEEEEEC
Confidence 5788899999999999955 44454 3455556554433 557777764
No 397
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=27.47 E-value=99 Score=18.17 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=23.2
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++++|--..+.|-. .+.+.+++. ....||++|.
T Consensus 43 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~ 80 (120)
T 2a9o_A 43 AEQPDIIILDLMLPEIDGL---EVAKTIRKT--SSVPILMLSA 80 (120)
T ss_dssp HHCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCCEEEEES
T ss_pred hCCCCEEEEeccCCCCCHH---HHHHHHHhC--CCCCEEEEec
Confidence 3589999999877776642 344555542 3444554443
No 398
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate mutase family member 5, BXLBV68, MGC protein, structural genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Probab=27.42 E-value=76 Score=21.78 Aligned_cols=26 Identities=8% Similarity=-0.143 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhC-------CcEEEEEeCCH
Q psy6940 61 LANIFWRYLNRLSVQ-------GQTIIITTHYI 86 (123)
Q Consensus 61 ~~~~i~~~l~~l~~~-------g~tviivtH~~ 86 (123)
..+++.+.+.++.++ +.+|++|||--
T Consensus 113 ~~~R~~~~~~~~~~~~~~~~~~~~~vlvVsHg~ 145 (202)
T 3mxo_A 113 DGARIEAAFRNYIHRADARQEEDSYEIFICHAN 145 (202)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhhhhccCCCceEEEEeCHH
Confidence 345566666666532 56899999954
No 399
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=27.30 E-value=1e+02 Score=22.15 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 51 DEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 51 DEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
|+...++|+.....+.+.|..+.+.|.-+++|+
T Consensus 22 ~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVh 54 (247)
T 2a1f_A 22 GEDGLGIDPAILDRMAVEIKELVEMGVEVSVVL 54 (247)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 333567899999999999998887776555554
No 400
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=27.19 E-value=2.2e+02 Score=22.32 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
+.++..+.+++.-|...+...++++.|+| +++... +...++++.. .+..+|++-+
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~--~~s~~~---i~~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAGIYIDDTP--SIRVSD---IRAKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSCEEEECCT--TCCHHH---HHHHHHHHHTTTCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHH---HHHHHHHHHHHcCCCEEEEcc
Confidence 46788888888877777777888888865 455433 4455566553 3667777753
No 401
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=27.07 E-value=2e+02 Score=21.56 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=36.7
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 37 IAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 37 iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
+..+...+.+.++|+=. .|++...+.+.+..++ -|..+++-.|+.+++..
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~l~~l~~~a~~---lGl~~lvevh~~eEl~~ 184 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDLAKELEDTAFA---LGMDALIEVHDEAEMER 184 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHHHHHHHHHHHH---TTCEEEEEECSHHHHHH
T ss_pred HHHHHHcCCCEEEEccc--ccCHHHHHHHHHHHHH---cCCeEEEEeCCHHHHHH
Confidence 66677889999999644 6777554445444433 48999999999999865
No 402
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET: 3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1 PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Probab=27.03 E-value=71 Score=22.54 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=16.6
Q ss_pred HHHHHHHHHH-Hh---hCCcEEEEEeCCHH
Q psy6940 62 ANIFWRYLNR-LS---VQGQTIIITTHYIE 87 (123)
Q Consensus 62 ~~~i~~~l~~-l~---~~g~tviivtH~~~ 87 (123)
.+++.+.+.+ +. ..+.+|++|||..-
T Consensus 155 ~~R~~~~l~~~i~~~~~~~~~vlvVsHg~~ 184 (240)
T 1qhf_A 155 IDRLLPYWQDVIAKDLLSGKTVMIAAHGNS 184 (240)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEeCHHH
Confidence 4455555555 32 25778999999653
No 403
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.00 E-value=1.5e+02 Score=20.28 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=21.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
.+|+++|+|--..+.|-. .+.+.+++.. +..||++|
T Consensus 48 ~~~dlvilD~~l~~~~g~---~~~~~lr~~~--~~~ii~lt 83 (238)
T 2gwr_A 48 LRPDLVLLDLMLPGMNGI---DVCRVLRADS--GVPIVMLT 83 (238)
T ss_dssp HCCSEEEEESSCSSSCHH---HHHHHHHTTC--CCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH---HHHHHHHhCC--CCcEEEEe
Confidence 589999999877777642 3344444322 44455444
No 404
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=26.97 E-value=1.2e+02 Score=18.98 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=23.4
Q ss_pred cCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSP-SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p-~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
.+| +++|+|--..+.|. ..+.+.+++.. ....||++|.
T Consensus 46 ~~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~~s~ 84 (151)
T 3kcn_A 46 SDPFSVIMVDMRMPGMEG---TEVIQKARLIS-PNSVYLMLTG 84 (151)
T ss_dssp SCCCSEEEEESCCSSSCH---HHHHHHHHHHC-SSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCcH---HHHHHHHHhcC-CCcEEEEEEC
Confidence 456 99999988777774 23445555433 3455555554
No 405
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=26.84 E-value=84 Score=25.79 Aligned_cols=45 Identities=4% Similarity=0.044 Sum_probs=33.8
Q ss_pred hcCCCEEEEeCCCCC-------------CCH------HHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 42 LHSPSLVILDEPTSG-------------LDP------VLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 42 ~~~p~lliLDEPt~g-------------LD~------~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+.+|+++++|-|... .+. ..++.+...+.++.+.|..++++.-++
T Consensus 229 ien~kIll~~~~le~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I 292 (528)
T 3p9d_D 229 KEKAKIGLIQFQISPPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSI 292 (528)
T ss_dssp ESSEEEEEECCCSSCCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCS
T ss_pred ccCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 579999999999762 221 223457778888887899999998777
No 406
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR {Schizosaccharomyces pombe} SCOP: c.60.1.1
Probab=26.81 E-value=66 Score=22.29 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhh----CCcEEEEEeCCHH
Q psy6940 63 NIFWRYLNRLSV----QGQTIIITTHYIE 87 (123)
Q Consensus 63 ~~i~~~l~~l~~----~g~tviivtH~~~ 87 (123)
.++.+.+.++.. .+.+|++|||..-
T Consensus 138 ~R~~~~l~~l~~~~~~~~~~vlvVsHg~~ 166 (211)
T 1fzt_A 138 ERVLPYYKSTIVPHILKGEKVLIAAHGNS 166 (211)
T ss_dssp HHHHHHHHHHHTTHHHHTCCEEEESCHHH
T ss_pred HHHHHHHHHHHhhhhcCCCeEEEEeChHH
Confidence 456666666532 3678999999653
No 407
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=26.81 E-value=1.7e+02 Score=21.73 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 38 AVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 38 araL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
..|...+.+.++| +.+.|++.....+.+.. .+-|..+++..|+.+++..
T Consensus 129 ~~A~~~GAD~VlL--i~a~l~~~~l~~l~~~a---~~lGl~~lvev~t~ee~~~ 177 (272)
T 3qja_A 129 HEARAHGADMLLL--IVAALEQSVLVSMLDRT---ESLGMTALVEVHTEQEADR 177 (272)
T ss_dssp HHHHHTTCSEEEE--EGGGSCHHHHHHHHHHH---HHTTCEEEEEESSHHHHHH
T ss_pred HHHHHcCCCEEEE--ecccCCHHHHHHHHHHH---HHCCCcEEEEcCCHHHHHH
Confidence 3344567777777 12234454433343333 3358999999999988754
No 408
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=26.58 E-value=98 Score=17.84 Aligned_cols=39 Identities=8% Similarity=0.169 Sum_probs=24.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH 84 (123)
..|+++|+|-...+.|. ..+.+.+++... .+..||++|.
T Consensus 44 ~~~dlii~d~~~~~~~~---~~~~~~l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 44 LQPIVILMAWPPPDQSC---LLLLQHLREHQADPHPPLVLFLG 83 (119)
T ss_dssp HCCSEEEEECSTTCCTH---HHHHHHHHHTCCCSSCCCEEEES
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhccccCCCCEEEEeC
Confidence 57999999988777664 235555555331 2444555544
No 409
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=26.40 E-value=1.4e+02 Score=19.49 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEE-EEeCCH
Q psy6940 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTII-ITTHYI 86 (123)
Q Consensus 27 LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi-ivtH~~ 86 (123)
-+.|+. ++...--.+|+++|+|==.-++|- -++.+.|++... .+..|| +++|.-
T Consensus 43 a~~g~~---al~~~~~~~~DlillD~~MP~mdG---~el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 43 ADDGLT---ALPMLKKGDFDFVVTDWNMPGMQG---IDLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp ESSHHH---HHHHHHHHCCSEEEEESCCSSSCH---HHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred ECCHHH---HHHHHHhCCCCEEEEcCCCCCCCH---HHHHHHHHhCCCCCCCeEEEEECCCC
Confidence 345553 233333468999999998888885 235555554322 244455 455543
No 410
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=26.33 E-value=1.5e+02 Score=21.40 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=33.3
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 39 VTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 39 raL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
.+.....+++++|-. ..++|.. +.++++..++.|..++...|+.+++.
T Consensus 96 ~~~~aGad~I~l~~~-~~~~p~~---l~~~i~~~~~~g~~v~~~v~t~eea~ 143 (229)
T 3q58_A 96 ALAQAGADIIAFDAS-FRSRPVD---IDSLLTRIRLHGLLAMADCSTVNEGI 143 (229)
T ss_dssp HHHHHTCSEEEEECC-SSCCSSC---HHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred HHHHcCCCEEEECcc-ccCChHH---HHHHHHHHHHCCCEEEEecCCHHHHH
Confidence 356679999999964 4455643 34444444445889999999998875
No 411
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=26.02 E-value=17 Score=27.85 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=36.2
Q ss_pred HHHHcCcchhcCCCCCCCC-HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6940 10 ILTRTRDFALRKLLPNWTV-GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNR 71 (123)
Q Consensus 10 ~l~~~~l~~~~~~~~~~LS-gGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~ 71 (123)
++..+|....+-.+.+-|+ .-|- .++|.|-+.+ .+ .=|||.|+|..+...|.++..+
T Consensus 176 ml~dmG~~SvKffPM~Gl~~leEl--~avAkAca~~-g~--~lEPTGGIdl~Nf~~I~~i~l~ 233 (275)
T 3m6y_A 176 LVRDMGGNSLKYFPMKGLAHEEEY--RAVAKACAEE-GF--ALEPTGGIDKENFETIVRIALE 233 (275)
T ss_dssp HHHHHTCCEEEECCCTTTTTHHHH--HHHHHHHHHH-TC--EEEEBSSCCTTTHHHHHHHHHH
T ss_pred HHHHcCCCeeeEeecCCcccHHHH--HHHHHHHHHc-Cc--eECCCCCccHhHHHHHHHHHHH
Confidence 3444565666666666554 3443 3455555443 33 4499999999998888887655
No 412
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.98 E-value=1.2e+02 Score=18.71 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=22.7
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
..|+++|+|--..+.|- ..+.+.+++.. .+..||++|.
T Consensus 66 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~-~~~~ii~lt~ 103 (146)
T 4dad_A 66 DAFDILMIDGAALDTAE---LAAIEKLSRLH-PGLTCLLVTT 103 (146)
T ss_dssp TTCSEEEEECTTCCHHH---HHHHHHHHHHC-TTCEEEEEES
T ss_pred CCCCEEEEeCCCCCccH---HHHHHHHHHhC-CCCcEEEEeC
Confidence 68999999987655332 34455555533 2445555554
No 413
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A
Probab=25.75 E-value=1.3e+02 Score=20.94 Aligned_cols=41 Identities=7% Similarity=0.144 Sum_probs=25.2
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHHH
Q psy6940 46 SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEEA 89 (123)
Q Consensus 46 ~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~~ 89 (123)
..+++|= |..+.....+.+.+++........|++|| +.+.+
T Consensus 58 ~~iLID~---G~~~~~~~~l~~~l~~~~~~~i~~vi~TH~H~DH~ 99 (243)
T 4hl2_A 58 RVLVVDT---AWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKM 99 (243)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHTCCCEEEEEECSSSHHHH
T ss_pred cEEEEEC---CCCCccHHHHHHHHHHhhCCCeeEEEECCCCcccc
Confidence 4667774 44556666777777664223466788888 44443
No 414
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=25.73 E-value=1.5e+02 Score=20.61 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=26.4
Q ss_pred CCCEEEEeC-CCCCCCHH-HHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 44 SPSLVILDE-PTSGLDPV-LANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 44 ~p~lliLDE-Pt~gLD~~-~~~~i~~~l~~l~~~g~tviivtH 84 (123)
+.+++++|= =|- +|.. ......+.|++++++|..|+++|-
T Consensus 5 ~~kli~~DlDGTL-l~~~~~~~~~~~ai~~l~~~Gi~v~laTg 46 (266)
T 3pdw_A 5 TYKGYLIDLDGTM-YNGTEKIEEACEFVRTLKDRGVPYLFVTN 46 (266)
T ss_dssp CCSEEEEECSSST-TCHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCEEEEeCcCce-EeCCEeCccHHHHHHHHHHCCCeEEEEeC
Confidence 467888873 221 3432 223457788888888999999976
No 415
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0
Probab=25.66 E-value=68 Score=21.90 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 45 PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 45 p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-..+++|=. .++.....+.+.+.+........|++||
T Consensus 40 ~~~iLiD~G---~~~~~~~~~~~~l~~~~~~~i~~ii~TH 76 (219)
T 3l6n_A 40 KGVVLFDVP---WEKVQYQSLMDTIKKRHNLPVVAVFATH 76 (219)
T ss_dssp TEEEEESCC---SSGGGHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CEEEEEeCC---CChHHHHHHHHHHHHhcCCceeEEEecC
Confidence 456777744 3333445566666654334677889998
No 416
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio} PDB: 3e9d_A 3e9e_A
Probab=25.49 E-value=67 Score=23.25 Aligned_cols=11 Identities=9% Similarity=0.117 Sum_probs=9.2
Q ss_pred CcEEEEEeCCH
Q psy6940 76 GQTIIITTHYI 86 (123)
Q Consensus 76 g~tviivtH~~ 86 (123)
+.+|++|||--
T Consensus 175 ~~~vlvVsHg~ 185 (265)
T 3e9c_A 175 PVHALMVSHGA 185 (265)
T ss_dssp CCEEEEEECHH
T ss_pred CCeEEEEeCHH
Confidence 67999999954
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=25.45 E-value=0.66 Score=36.95 Aligned_cols=35 Identities=9% Similarity=-0.069 Sum_probs=29.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEE-EeCCCC
Q psy6940 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVI-LDEPTS 55 (123)
Q Consensus 21 ~~~~~~LSgGqrqrv~iaraL~~~p~lli-LDEPt~ 55 (123)
+.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 277 d~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 277 TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred ChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 45667789999999998888888999888 999976
No 418
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural genomics, medical STRU genomics of pathogenic protozoa, MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Probab=25.22 E-value=70 Score=22.83 Aligned_cols=25 Identities=4% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHHHHHHHHHH-h---hCCcEEEEEeCCH
Q psy6940 62 ANIFWRYLNRL-S---VQGQTIIITTHYI 86 (123)
Q Consensus 62 ~~~i~~~l~~l-~---~~g~tviivtH~~ 86 (123)
..++...+.++ . ..+.+|++|||-.
T Consensus 166 ~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~ 194 (258)
T 3kkk_A 166 VERVLPFWFDHIAPDILANKKVMVAAHGN 194 (258)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHhhhccCCCEEEEEcCHH
Confidence 34555655553 2 3578999999965
No 419
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=25.08 E-value=1.2e+02 Score=21.96 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=24.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 51 DEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 51 DEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
|+.+.++|+...+.+.+.|..+.+.|.-+++|.-
T Consensus 26 ~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~G 59 (255)
T 2jjx_A 26 DQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIG 59 (255)
T ss_dssp CSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3345678999999999999988877765555543
No 420
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=25.07 E-value=59 Score=21.76 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCCcEEEEEeCCHHHHHh-hccee
Q psy6940 64 IFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTVF 96 (123)
Q Consensus 64 ~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v~ 96 (123)
.+.+.++..++.|..+|.+|.+..-+.. ||.++
T Consensus 97 ~~~~~~~~ak~~g~~vi~IT~~~~sl~~~ad~~l 130 (180)
T 1jeo_A 97 SVLTVAKKAKNINNNIIAIVCECGNVVEFADLTI 130 (180)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSCCGGGGGCSEEE
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCChHHHhCCEEE
Confidence 4566666666678877777775432555 88776
No 421
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=24.97 E-value=1.1e+02 Score=18.07 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=24.0
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++|+|--..+.|-. .+.+.+++. .+..+|++|.
T Consensus 45 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~~--~~~~ii~~s~ 82 (123)
T 1xhf_A 45 EYDINLVIMDINLPGKNGL---LLARELREQ--ANVALMFLTG 82 (123)
T ss_dssp HSCCSEEEECSSCSSSCHH---HHHHHHHHH--CCCEEEEEES
T ss_pred cCCCCEEEEcCCCCCCCHH---HHHHHHHhC--CCCcEEEEEC
Confidence 3689999999877777642 344455543 3455555554
No 422
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=24.85 E-value=1.2e+02 Score=18.45 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=37.9
Q ss_pred HHHHHh-cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 37 IAVTLL-HSPSLVILD-EPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 37 iaraL~-~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
+..++. .+++-+++| .....+|......+....+++.+.|..+.++.-...
T Consensus 33 l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~ 85 (117)
T 1h4x_A 33 ISTAIFQGAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRTILLNPSPT 85 (117)
T ss_dssp HHHHHHHTSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEEEEESCCHH
T ss_pred HHHHHhcCCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 334443 356778888 456789999999999999888878888888765543
No 423
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=24.65 E-value=1.5e+02 Score=23.15 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
..|++++|-|-.|++. +.+.+.++ ....|+++|.++..+.+
T Consensus 356 ~fD~Vv~dPPr~g~~~-----~~~~l~~~--~p~~ivyvsc~p~tlar 396 (433)
T 1uwv_A 356 GFDKVLLDPARAGAAG-----VMQQIIKL--EPIRIVYVSCNPATLAR 396 (433)
T ss_dssp CCSEEEECCCTTCCHH-----HHHHHHHH--CCSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCCccHHH-----HHHHHHhc--CCCeEEEEECChHHHHh
Confidence 5799999999999862 33444443 34578999999987655
No 424
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=24.63 E-value=2.4e+02 Score=23.22 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh-hcce
Q psy6940 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ-ANTV 95 (123)
Q Consensus 30 Gqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~-~d~v 95 (123)
-..|+-|+..||..+|-.||.=-|=+|=- ..+.+++..+.+.|..|+++++--..+.+ +.++
T Consensus 191 N~~Q~~AV~~al~~~~~~lI~GPPGTGKT----~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL 253 (646)
T 4b3f_X 191 DTSQKEAVLFALSQKELAIIHGPPGTGKT----TTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERL 253 (646)
T ss_dssp CHHHHHHHHHHHHCSSEEEEECCTTSCHH----HHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCceEEECCCCCCHH----HHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHH
Confidence 35577788888877666666666755521 23566777777778899999997665544 4443
No 425
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A {Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A* 2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Probab=24.61 E-value=72 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=16.7
Q ss_pred HHHHHHHHHH-Hh---hCCcEEEEEeCCH
Q psy6940 62 ANIFWRYLNR-LS---VQGQTIIITTHYI 86 (123)
Q Consensus 62 ~~~i~~~l~~-l~---~~g~tviivtH~~ 86 (123)
..++...+.+ +. ..+.+|++|||-.
T Consensus 162 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 190 (267)
T 2hhj_A 162 LERLLPYWNERIAPEVLRGKTILISAHGN 190 (267)
T ss_dssp HHHHHHHHHHHTHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcCcH
Confidence 3456666665 43 2578999999965
No 426
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=24.48 E-value=49 Score=24.74 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHHHH
Q psy6940 26 WTVGGQVRRVSIAVTLLHSP--------------SLVILDEPTS-GLDPVLA 62 (123)
Q Consensus 26 ~LSgGqrqrv~iaraL~~~p--------------~lliLDEPt~-gLD~~~~ 62 (123)
-+-+|+.|+-++.+++-.+. -.+++||.++ .|+....
T Consensus 201 ~la~G~~Ka~ai~~al~g~~~~~~Pas~l~~h~~~~li~D~~aA~~L~~~~~ 252 (289)
T 1ne7_A 201 ILITGAHKAFALYKAIEEGVNHMWTVSAFQQHPRTVFVCDEDATLELKVKTV 252 (289)
T ss_dssp EEECSGGGHHHHHHHHTSCCCTTSGGGGGGGCSSEEEEEEGGGGTTSBHHHH
T ss_pred EEEcCHHHHHHHHHHHhCCCCccCchHHHccCCCEEEEEcHHHHhhcccchh
Confidence 44578888888988887654 3899999996 5764433
No 427
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=24.27 E-value=79 Score=30.75 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=30.2
Q ss_pred HHHHHHH--hcCCCEEEEeCCCCCCCH---------------H---HHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 35 VSIAVTL--LHSPSLVILDEPTSGLDP---------------V---LANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 35 v~iaraL--~~~p~lliLDEPt~gLD~---------------~---~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
..+...+ ...|+++++||-+ .|.+ . ..+.+++++..+.+.+.|+|++...
T Consensus 1148 ~~i~~~l~~~~~~dlvVIDsl~-~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1148 LEICDALARSGAVDVIVVDSVA-ALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGG-GCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEECCcc-cccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 3444444 4679999999932 2321 1 2244666666666668888887664
No 428
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=24.22 E-value=1.7e+02 Score=21.09 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=33.3
Q ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHH
Q psy6940 39 VTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEAR 90 (123)
Q Consensus 39 raL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~ 90 (123)
.++....+++++|-. ..++|.. +.++++..++.|..++...|+.+++.
T Consensus 96 ~~~~~Gad~V~l~~~-~~~~p~~---l~~~i~~~~~~g~~v~~~v~t~eea~ 143 (232)
T 3igs_A 96 ALAQAGAAIIAVDGT-ARQRPVA---VEALLARIHHHHLLTMADCSSVDDGL 143 (232)
T ss_dssp HHHHHTCSEEEEECC-SSCCSSC---HHHHHHHHHHTTCEEEEECCSHHHHH
T ss_pred HHHHcCCCEEEECcc-ccCCHHH---HHHHHHHHHHCCCEEEEeCCCHHHHH
Confidence 356678999999964 4455633 34444444445889999999998875
No 429
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=24.16 E-value=1.4e+02 Score=18.69 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=23.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEE-EEEeCC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTI-IITTHY 85 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tv-iivtH~ 85 (123)
..|+++|+|--..+.|-. .+.+.+++... .+..| +++++.
T Consensus 60 ~~~dlillD~~lp~~~g~---~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 60 PRPNLILLDLNLPKKDGR---EVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp CCCSEEEECSCCSSSCHH---HHHHHHHHCTTTTTSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCcHH---HHHHHHHhCcCcCCCeEEEEECCC
Confidence 369999999887777742 34555554221 23344 455543
No 430
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=23.96 E-value=1.2e+02 Score=18.09 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=23.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~-~~g~tviivtH 84 (123)
-..|+++++|--..+.|-. .+.+.+++.. ..+..||++|.
T Consensus 49 ~~~~dlvl~D~~l~~~~g~---~~~~~l~~~~~~~~~~ii~~s~ 89 (129)
T 1p6q_A 49 QNPHHLVISDFNMPKMDGL---GLLQAVRANPATKKAAFIILTA 89 (129)
T ss_dssp TSCCSEEEECSSSCSSCHH---HHHHHHTTCTTSTTCEEEECCS
T ss_pred cCCCCEEEEeCCCCCCCHH---HHHHHHhcCccccCCCEEEEeC
Confidence 3579999999877777642 3444444321 12455666554
No 431
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=23.92 E-value=82 Score=24.84 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHHhcCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHh-----hCCcEEEEEeCCHHH
Q psy6940 37 IAVTLLHSPSLVILDEPTSG-------LDPVLANIFWRYLNRLS-----VQGQTIIITTHYIEE 88 (123)
Q Consensus 37 iaraL~~~p~lliLDEPt~g-------LD~~~~~~i~~~l~~l~-----~~g~tviivtH~~~~ 88 (123)
+..+-...|.+|++||--+- ......+.+.+++..+. ..+..||.+|+.++.
T Consensus 220 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 220 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 34444578999999997532 11111222223333321 235678888887643
No 432
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=23.67 E-value=39 Score=27.56 Aligned_cols=48 Identities=8% Similarity=0.234 Sum_probs=31.7
Q ss_pred hcCCCEEEEeCCCCC-------------CCH------HHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPTSG-------------LDP------VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt~g-------------LD~------~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+|+++++|-|... .+. ..++.+...+.++.+.|..++++.-+++..
T Consensus 185 i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~ 251 (500)
T 3aq1_B 185 VENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDM 251 (500)
T ss_dssp EEEEEEEEESSCBCC-------------------------CHHHHHHHHHHTTCCSEEEESSCBCHH
T ss_pred ccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEECCCcCHH
Confidence 579999999999322 111 112235777777777799999998877543
No 433
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=23.65 E-value=15 Score=30.48 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=25.1
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.||+++++|-+.+..+. +...+.++.+.|..++++.-+++..
T Consensus 215 ~en~~Ill~d~~I~~~~~-----l~~~le~i~~~g~~lvIi~~~I~~~ 257 (545)
T 1iok_A 215 LEDAYILLHEKKLSSLQP-----MVPLLESVIQSQKPLLIVAEDVEGE 257 (545)
T ss_dssp EEEEEEEECSSCBCCCCC----------------CCCCEEEESCBC--
T ss_pred ecCCeEEEEcCCcCCHHH-----HHHHHHHHHhcCCCEEEECCCcCHH
Confidence 578999999999887664 5566777776788999988776543
No 434
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=23.62 E-value=94 Score=20.71 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhCCcEEEEEeCCH-HHHHh-hccee
Q psy6940 64 IFWRYLNRLSVQGQTIIITTHYI-EEARQ-ANTVF 96 (123)
Q Consensus 64 ~i~~~l~~l~~~g~tviivtH~~-~~~~~-~d~v~ 96 (123)
.+.+.++..++.|..+|.+|.+. ..+.. ||.++
T Consensus 111 ~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l 145 (183)
T 2xhz_A 111 EITALIPVLKRLHVPLICITGRPESSMARAADVHL 145 (183)
T ss_dssp HHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEE
Confidence 45566666666787777777654 45555 88877
No 435
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.54 E-value=1.8e+02 Score=19.71 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=23.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh---hCCcEEEEEeC
Q psy6940 44 SPSLVILDEPTSGLDPVLANIFWRYLNRLS---VQGQTIIITTH 84 (123)
Q Consensus 44 ~p~lliLDEPt~gLD~~~~~~i~~~l~~l~---~~g~tviivtH 84 (123)
.|+++|+|=-..+.|- ..+.+.|++.. .....||++|-
T Consensus 119 ~~dlillD~~lp~~~G---~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDG---YEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SCSEEEEESCCSSSCH---HHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 7999999987777764 33555555542 13445555554
No 436
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=23.50 E-value=1.8e+02 Score=20.26 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHH------HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCc--EEEEEe----CCHHHH
Q psy6940 22 LLPNWTVGGQVRRV------SIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ--TIIITT----HYIEEA 89 (123)
Q Consensus 22 ~~~~~LSgGqrqrv------~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~--tviivt----H~~~~~ 89 (123)
+.+.+.|..+.+++ .|..++-.+.-+++|||--..+|.. .+.+.|.++...|. .+++|- ++.+..
T Consensus 46 k~~~~~s~~~~~~~~~~Eg~~il~~i~~~~~vI~LD~~Gk~~sS~---~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~ 122 (163)
T 4fak_A 46 KAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSE---GLAQELNQRMTQGQSDFVFVIGGSNGLHKDVL 122 (163)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHTCCTTSEEEEEEEEEEECCHH---HHHHHHHHHHHTTCCEEEEEECBTTBCCHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHH---HHHHHHHHHHhcCCcceEEEEECCCccCHHHH
Confidence 34677887643222 1233333455699999998888874 56777777766653 344442 344444
Q ss_pred Hhhccee
Q psy6940 90 RQANTVF 96 (123)
Q Consensus 90 ~~~d~v~ 96 (123)
.+||..+
T Consensus 123 ~rA~~~l 129 (163)
T 4fak_A 123 QRSNYAL 129 (163)
T ss_dssp HHCSEEE
T ss_pred HhcCceE
Confidence 4477665
No 437
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=23.34 E-value=61 Score=24.90 Aligned_cols=42 Identities=17% Similarity=0.077 Sum_probs=24.7
Q ss_pred cCCCEEEEeCCCCCCCHHH-------HHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 43 HSPSLVILDEPTSGLDPVL-------ANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~-------~~~i~~~l~~l~~~g~tviivtH 84 (123)
...+++++|-|..+.+... ...+.....++.+.|..++++++
T Consensus 278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 3579999999998776422 22233333333344556666665
No 438
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.28 E-value=1.2e+02 Score=18.04 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=22.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCcEEE-EEeCCH
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTII-ITTHYI 86 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~-~g~tvi-ivtH~~ 86 (123)
.+|+++|+|--..+.|- ..+.+.+++... .+..|| ++++.-
T Consensus 45 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~~~ii~~s~~~~ 87 (127)
T 2jba_A 45 PWPDLILLAWMLPGGSG---IQFIKHLRRESMTRDIPVVMLTARGE 87 (127)
T ss_dssp SCCSEEEEESEETTEEH---HHHHHHHHTSTTTTTSCEEEEEETTH
T ss_pred cCCCEEEEecCCCCCCH---HHHHHHHHhCcccCCCCEEEEeCCCC
Confidence 46999999986666553 234444544221 234444 445443
No 439
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=23.14 E-value=1.4e+02 Score=21.53 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=27.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHhhC-Cc-EEEEEe
Q psy6940 47 LVILDEP--TSGLDPVLANIFWRYLNRLSVQ-GQ-TIIITT 83 (123)
Q Consensus 47 lliLDEP--t~gLD~~~~~~i~~~l~~l~~~-g~-tviivt 83 (123)
+|-||-| -+.|++.....+.+.+.++..+ .. .||++.
T Consensus 12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg 52 (254)
T 3hrx_A 12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTG 52 (254)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 3556655 6899999999999999998754 43 455544
No 440
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=23.13 E-value=1.2e+02 Score=24.80 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=31.8
Q ss_pred hcCCCEEEEeCCCCCCC------------HHH--------HHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPTSGLD------------PVL--------ANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD------------~~~--------~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.||+++++|-|...-- +.. ++.+.+.+.++.+.|..++++.-+++..
T Consensus 219 ~en~kIll~~~~Le~~k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~ 286 (513)
T 3iyg_B 219 IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNY 286 (513)
T ss_pred ecCceEEEEcCCcccccccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHH
Confidence 57999999998754221 111 1223456777777799999998877543
No 441
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=23.08 E-value=68 Score=26.32 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=32.5
Q ss_pred hcCCCEEEEeCCCCCC-----------CHHH--------HHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPTSGL-----------DPVL--------ANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt~gL-----------D~~~--------~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+|+++++|-|...- |+.. ++.+.+.+.++.+.|..++++.-+++..
T Consensus 223 ien~kIlll~~~le~~k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~ 289 (529)
T 3iyg_A 223 IVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDM 289 (529)
T ss_pred cCCceEEEecCCcccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 4689999999996321 1111 2236667777777799999998877543
No 442
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.80A {Vibrio parahaemolyticus}
Probab=23.07 E-value=72 Score=22.31 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhC-CcEEEEEeCCH
Q psy6940 62 ANIFWRYLNRLSVQ-GQTIIITTHYI 86 (123)
Q Consensus 62 ~~~i~~~l~~l~~~-g~tviivtH~~ 86 (123)
.+++.+.+.++.++ ..+|++|||-.
T Consensus 126 ~~R~~~~l~~l~~~~~~~vlvVsHg~ 151 (213)
T 3hjg_A 126 SQRVSRAWSQIINDINDNLLIVTHGG 151 (213)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCHH
Confidence 34566666666432 47899999964
No 443
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=22.87 E-value=45 Score=27.58 Aligned_cols=48 Identities=8% Similarity=0.330 Sum_probs=32.3
Q ss_pred hcCCCEEEEeCCCCC----------C-CHHH--------HHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 42 LHSPSLVILDEPTSG----------L-DPVL--------ANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 42 ~~~p~lliLDEPt~g----------L-D~~~--------~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
+.+|+++++|-|... + ++.. ++.+...+.++.+.|..+|++.-+++..
T Consensus 234 ien~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~ 300 (548)
T 1q3q_A 234 VENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDL 300 (548)
T ss_dssp ESSEEEEEECSCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHH
T ss_pred ecCCEEEEEecCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHH
Confidence 589999999999332 1 1111 2234666777776788899998877543
No 444
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU proteolysis, structural genomics, PSI protein structure initiative; 1.80A {Agrobacterium tumefaciens str}
Probab=22.81 E-value=96 Score=21.93 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhC---CcEEEEEeCCHH
Q psy6940 62 ANIFWRYLNRLSVQ---GQTIIITTHYIE 87 (123)
Q Consensus 62 ~~~i~~~l~~l~~~---g~tviivtH~~~ 87 (123)
.+++.+.+.++.++ +.+|++|||..-
T Consensus 138 ~~Rv~~~l~~l~~~~~~~~~vlvVsHg~~ 166 (219)
T 2qni_A 138 QARIVEAVKAVLDRHDARQPIAFVGHGGV 166 (219)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeCHHH
Confidence 34566667776543 258999999753
No 445
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=22.81 E-value=61 Score=23.62 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCC--------------CEEEEeCCCC-CCCHH
Q psy6940 25 NWTVGGQVRRVSIAVTLLHSP--------------SLVILDEPTS-GLDPV 60 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~~p--------------~lliLDEPt~-gLD~~ 60 (123)
--+-+|+.|.-+|.+++-.+. ..+++||.++ .|+..
T Consensus 200 i~va~G~~Ka~ai~~al~g~~~~~~Pas~l~~~~~~~li~D~~aA~~L~~~ 250 (266)
T 1fs5_A 200 MILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMELKVK 250 (266)
T ss_dssp EEEECSGGGHHHHHHHHHSCCCSSSGGGGGGGCSSEEEEECSGGGTTSBHH
T ss_pred EEEecChHHHHHHHHHhcCCCCCcCChHHHccCCCEEEEEeHHHhhhcccc
Confidence 344588888889988886543 6799999996 57644
No 446
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=22.69 E-value=1.1e+02 Score=21.18 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=23.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHH
Q psy6940 46 SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEE 88 (123)
Q Consensus 46 ~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~ 88 (123)
..+++|=+ ........+.+.+++........|++|| +.+.
T Consensus 47 ~~iLiD~G---~~~~~~~~~~~~l~~~~~~~i~~ii~TH~H~DH 87 (232)
T 1a7t_A 47 QAALLDTP---INDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDC 87 (232)
T ss_dssp EEEEESCC---SSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHH
T ss_pred EEEEEeCC---CCHHHHHHHHHHHHHhcCCCeEEEEeCCCCccc
Confidence 46777744 3344455667777665323456788888 4443
No 447
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=22.56 E-value=79 Score=22.48 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=25.8
Q ss_pred CCCEEEEeCC----CCCCCHHHHHHHHHHHHHHhhC--CcEEEEEe
Q psy6940 44 SPSLVILDEP----TSGLDPVLANIFWRYLNRLSVQ--GQTIIITT 83 (123)
Q Consensus 44 ~p~lliLDEP----t~gLD~~~~~~i~~~l~~l~~~--g~tviivt 83 (123)
+|++++-||- ..-+|+.....+..+-..+..+ |..|.+++
T Consensus 63 n~divFrDee~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~S 108 (170)
T 3n1g_B 63 NPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTE 108 (170)
T ss_dssp CTTEEECCTTSSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred CCCcEEecccccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEe
Confidence 8999999999 4556666665555443333221 66677765
No 448
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria, glycolysis, I structural genomics consortium, SGC; 2.01A {Cryptosporidium parvum}
Probab=22.52 E-value=95 Score=22.49 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=16.5
Q ss_pred HHHHHHHHHH-Hh---hCCcEEEEEeCCH
Q psy6940 62 ANIFWRYLNR-LS---VQGQTIIITTHYI 86 (123)
Q Consensus 62 ~~~i~~~l~~-l~---~~g~tviivtH~~ 86 (123)
.+++...+.+ +. ..+.+|++|||-.
T Consensus 175 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~ 203 (267)
T 3d8h_A 175 VERVKPYFEDVIAPSIMSGKSVLVSAHGN 203 (267)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHH
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEEeCHH
Confidence 4455666655 33 2577999999965
No 449
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=22.52 E-value=90 Score=20.88 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=29.5
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH-HHHHh-hccee
Q psy6940 41 LLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI-EEARQ-ANTVF 96 (123)
Q Consensus 41 L~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~-~~~~~-~d~v~ 96 (123)
.+.+-+++|+= -.+|=.+ .+.+.++..++.|.++|.+|.+. ..+.+ ||.++
T Consensus 107 ~~~~~Dvvi~i-S~sG~t~----~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l 159 (188)
T 1tk9_A 107 LGNEKDVLIGI-STSGKSP----NVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNL 159 (188)
T ss_dssp HCCTTCEEEEE-CSSSCCH----HHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEE
T ss_pred hCCCCCEEEEE-eCCCCCH----HHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEE
Confidence 35555655541 1234333 45566666666788777777654 44555 88777
No 450
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=22.48 E-value=25 Score=29.25 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=32.8
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHH
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~ 88 (123)
+.||+++++|-+.+..+ .+...+.++.+.|+.++++.-+++.
T Consensus 214 lenp~Ill~d~~Is~~~-----~l~~~le~i~~~g~~lvIi~~~I~~ 255 (547)
T 1kp8_A 214 LESPFILLADKKISNIR-----EMLPVLEAVAKAGKPLLIIAEDVEG 255 (547)
T ss_dssp EESCEEECEESEECCGG-----GTHHHHHHHHGGGCCEEEEESEECH
T ss_pred ecCceEEEEcCcCCCHH-----HHHHHHHHHHhcCCCEEEECCCcCH
Confidence 47999999999977654 3667777777778899999887654
No 451
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=22.38 E-value=1.3e+02 Score=17.67 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=21.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH 84 (123)
-.+|+++++|--..+.|-. .+.+.+++ .....+|++|.
T Consensus 43 ~~~~dlvi~D~~l~~~~g~---~~~~~l~~--~~~~~ii~~s~ 80 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDGI---EFIRDLRQ--WSAVPVIVLSA 80 (121)
T ss_dssp HHCCSEEEEESEETTEEHH---HHHHHHHT--TCCCCEEEEES
T ss_pred cCCCCEEEEeCCCCCCcHH---HHHHHHHh--CCCCcEEEEEC
Confidence 3589999999876666532 34444442 22444554443
No 452
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=22.19 E-value=1.5e+02 Score=18.45 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=37.6
Q ss_pred cCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHhh-CCcEEEEEeCCHH
Q psy6940 43 HSPSLVILD-EPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLD-EPt~gLD~~~~~~i~~~l~~l~~-~g~tviivtH~~~ 87 (123)
.+|+.+++| .....+|..+...+....++.++ .|..+.++.-...
T Consensus 46 ~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~~~ 92 (121)
T 3t6o_A 46 AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGVFALCSVSPY 92 (121)
T ss_dssp SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCEEEEESCCHH
T ss_pred cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 568899999 56789999999999999999888 8888888865544
No 453
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=22.09 E-value=1.4e+02 Score=20.57 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=22.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeC-CHHH
Q psy6940 46 SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH-YIEE 88 (123)
Q Consensus 46 ~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH-~~~~ 88 (123)
..+++|= |..+.....+.+.+++.......-|++|| +.+.
T Consensus 41 ~~iLiD~---G~~~~~~~~l~~~l~~~~~~~~~~vi~TH~H~DH 81 (246)
T 2fhx_A 41 TVVIVSS---PFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDG 81 (246)
T ss_dssp EEEEESC---CSSHHHHHHHHHHHHHHHCCSEEEEECCSSSHHH
T ss_pred eEEEEeC---CCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCccc
Confidence 4778883 44555556677777664222222367888 4443
No 454
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=22.05 E-value=1.8e+02 Score=20.81 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=26.7
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHhhC-C-cEEEEEe
Q psy6940 47 LVILDEP--TSGLDPVLANIFWRYLNRLSVQ-G-QTIIITT 83 (123)
Q Consensus 47 lliLDEP--t~gLD~~~~~~i~~~l~~l~~~-g-~tviivt 83 (123)
++-||-| -+.+++.....+.+.+.++..+ . +.||++.
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg 52 (250)
T 2a7k_A 12 VITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYG 52 (250)
T ss_dssp EEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 3456766 5899999999999999888654 4 4455554
No 455
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=21.87 E-value=1.8e+02 Score=19.27 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=24.5
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 42 ~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
-..|+++|+|--..+.|-. .+.+.+++.. ....|+++++.-
T Consensus 56 ~~~~dlvi~D~~~p~~~g~---~~~~~l~~~~-~~pii~lt~~~~ 96 (205)
T 1s8n_A 56 LHKPDLVIMDVKMPRRDGI---DAASEIASKR-IAPIVVLTAFSQ 96 (205)
T ss_dssp HHCCSEEEEESSCSSSCHH---HHHHHHHHTT-CSCEEEEEEGGG
T ss_pred hcCCCEEEEeCCCCCCChH---HHHHHHHhcC-CCCEEEEecCCC
Confidence 3589999999887777752 3444454432 233455555543
No 456
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=21.87 E-value=1.7e+02 Score=19.07 Aligned_cols=44 Identities=9% Similarity=0.060 Sum_probs=36.2
Q ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 41 LLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 41 L~~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+...+.-+.||-=.+.|++..+..+.++...+... +..|.++.|
T Consensus 25 ~~~~~~~i~F~~~sa~L~~~~~~~L~~ia~~L~~~p~~~i~I~Gh 69 (134)
T 2aiz_P 25 LQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGN 69 (134)
T ss_dssp HTTTSCEEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred hhcCcceEEecCCCceeCHHHHHHHHHHHHHHHHCCCceEEEEEE
Confidence 66778888999889999999988888777777654 567889988
No 457
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=21.64 E-value=1.5e+02 Score=21.02 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCCcEEEEEe
Q psy6940 54 TSGLDPVLANIFWRYLNRLSVQGQTIIITT 83 (123)
Q Consensus 54 t~gLD~~~~~~i~~~l~~l~~~g~tviivt 83 (123)
..++|+.....+.+.|..+.+.|.-+++|+
T Consensus 24 ~~~~~~~~~~~~~~~i~~l~~~g~~vviV~ 53 (239)
T 1ybd_A 24 PFGINHDTIVQTVGEIAEVVKMGVQVGIVV 53 (239)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356899999999999999887776555555
No 458
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=21.25 E-value=1e+02 Score=22.45 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHHHHHHH-Hh---hCCcEEEEEeCCHH
Q psy6940 62 ANIFWRYLNR-LS---VQGQTIIITTHYIE 87 (123)
Q Consensus 62 ~~~i~~~l~~-l~---~~g~tviivtH~~~ 87 (123)
..++...+.+ +. ..|.+|++|||-..
T Consensus 157 ~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~~ 186 (265)
T 1rii_A 157 VARFLPYFTDVIVGDLRVGKTVLIVAHGNS 186 (265)
T ss_dssp HHHHHHHHHHTHHHHHHTTCCEEEEECHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEeChHH
Confidence 3445555555 32 25789999999653
No 459
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=21.14 E-value=1.5e+02 Score=21.89 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=27.7
Q ss_pred EEEEeCCC--CCCCHHHHHHHHHHHHHHhhC-C-cEEEEEe
Q psy6940 47 LVILDEPT--SGLDPVLANIFWRYLNRLSVQ-G-QTIIITT 83 (123)
Q Consensus 47 lliLDEPt--~gLD~~~~~~i~~~l~~l~~~-g-~tviivt 83 (123)
++-||-|- +.+++.....+.+.+.++..+ . +.||++.
T Consensus 40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 80 (276)
T 3rrv_A 40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITG 80 (276)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 35678785 899999999999999988654 4 4455544
No 460
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=21.04 E-value=1.7e+02 Score=21.28 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=27.1
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHhhC-C-cEEEEEe
Q psy6940 47 LVILDEP--TSGLDPVLANIFWRYLNRLSVQ-G-QTIIITT 83 (123)
Q Consensus 47 lliLDEP--t~gLD~~~~~~i~~~l~~l~~~-g-~tviivt 83 (123)
++-||-| -+.++......+.+.+.++..+ . +.||++.
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (265)
T 3rsi_A 21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61 (265)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4567777 4899999999999999988654 4 3445444
No 461
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=21.01 E-value=1.7e+02 Score=23.02 Aligned_cols=46 Identities=7% Similarity=0.163 Sum_probs=31.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHHHHHh
Q psy6940 46 SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91 (123)
Q Consensus 46 ~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~~~~~ 91 (123)
.++|-|+-+..-|+..+..+.+++....+.|..|.++|.+-+.-.+
T Consensus 316 tLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G~q 361 (386)
T 2vgn_A 316 YLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLGEE 361 (386)
T ss_dssp EEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHHHH
T ss_pred EEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcchhh
Confidence 5677777666668877777666665555678888888876655433
No 462
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.01 E-value=1.1e+02 Score=24.60 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=24.3
Q ss_pred cCCCEEEEeCCC--CCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCHH
Q psy6940 43 HSPSLVILDEPT--SGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87 (123)
Q Consensus 43 ~~p~lliLDEPt--~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~~ 87 (123)
.++.++++||.- ++-|......+.+.+. ..+..||+++.+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~---~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH---hcCCCEEEEEcCCC
Confidence 568899999973 2223222233444333 24567888887643
No 463
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=21.01 E-value=1.6e+02 Score=21.74 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=27.7
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHhhC-CcEEEEEeC
Q psy6940 48 VILDEP--TSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84 (123)
Q Consensus 48 liLDEP--t~gLD~~~~~~i~~~l~~l~~~-g~tviivtH 84 (123)
+-||-| -+.+++.....+.+.+.++..+ .. +|++|-
T Consensus 39 itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg 77 (280)
T 2f6q_A 39 IMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTG 77 (280)
T ss_dssp EEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEE
T ss_pred EEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeC
Confidence 457776 5999999999999999988754 56 555554
No 464
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=20.99 E-value=1.9e+02 Score=20.99 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCCH
Q psy6940 25 NWTVGGQVRRVSIAVTLLH--SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86 (123)
Q Consensus 25 ~~LSgGqrqrv~iaraL~~--~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~~ 86 (123)
+...+.+..++.+.+..+. .|+++=++ =+...+..... +++...++.|..||++.||.
T Consensus 76 G~~~~~~~~~~~ll~~~~~~~~~d~iDvE-l~~~~~~~~~~---~l~~~~~~~~~kvI~S~Hdf 135 (238)
T 1sfl_A 76 GYGQFTNDSYLNLISDLANINGIDMIDIE-WQADIDIEKHQ---RIITHLQQYNKEVIISHHNF 135 (238)
T ss_dssp SCBCCCHHHHHHHHHHGGGCTTCCEEEEE-CCTTSCHHHHH---HHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEEE-ccCCCChHHHH---HHHHHHHhcCCEEEEEecCC
Confidence 3445567788888888774 47766554 33222443333 33344344577899999974
No 465
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=20.88 E-value=55 Score=20.18 Aligned_cols=40 Identities=20% Similarity=0.077 Sum_probs=21.4
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCcEEEEEeCC
Q psy6940 43 HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD~~~~~~i~~~l~~l~~~g~tviivtH~ 85 (123)
.+|+++|+|=-..+.|- ..+.+.+++....-..|+++++.
T Consensus 58 ~~~dlvi~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 97 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLG---KPGIVEARALWATVPLIAVSDEL 97 (135)
T ss_dssp CCCSEEEEEEETTGGGG---STTHHHHHGGGTTCCEEEEESCC
T ss_pred cCCCEEEEeCCCCCchH---HHHHHHHHhhCCCCcEEEEeCCC
Confidence 57999999965544332 22444455433222344445543
No 466
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=20.86 E-value=2e+02 Score=20.78 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=26.2
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHhhC-C-cEEEEEe
Q psy6940 47 LVILDEP--TSGLDPVLANIFWRYLNRLSVQ-G-QTIIITT 83 (123)
Q Consensus 47 lliLDEP--t~gLD~~~~~~i~~~l~~l~~~-g-~tviivt 83 (123)
++-||-| -+.+++.....+.+.+.++..+ . +.||++.
T Consensus 17 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 57 (258)
T 2pbp_A 17 IIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTG 57 (258)
T ss_dssp EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 3557777 4889999989999988887654 3 4455544
No 467
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=20.86 E-value=1.3e+02 Score=22.77 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=37.2
Q ss_pred HHHHcCcchhcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy6940 10 ILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNR 71 (123)
Q Consensus 10 ~l~~~~l~~~~~~~~~~LSgGqrqrv~iaraL~~~p~lliLDEPt~gLD~~~~~~i~~~l~~ 71 (123)
++..+|....+-.+.+-|+.=+ --.++|.|-+.+ .+ .=|||.|+|..+...+.++..+
T Consensus 153 ml~dmG~~SvKffPm~Gl~~l~-E~~avAka~a~~-g~--~lEPTGGIdl~N~~~I~~i~l~ 210 (249)
T 3m0z_A 153 LLKDMGGSSIKYFPMGGLKHRA-EFEAVAKACAAH-DF--WLEPTGGIDLENYSEILKIALD 210 (249)
T ss_dssp HHHHTTCCEEEECCCTTTTTHH-HHHHHHHHHHHT-TC--EEEEBSSCCTTTHHHHHHHHHH
T ss_pred HHHHcCCCeeeEeecCCcccHH-HHHHHHHHHHHc-Cc--eECCCCCccHhhHHHHHHHHHH
Confidence 3455566666666666554322 234555555543 34 4499999999998888887765
No 468
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.45A {Mycobacterium leprae}
Probab=20.71 E-value=30 Score=25.27 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=10.0
Q ss_pred CCcEEEEEeCCH
Q psy6940 75 QGQTIIITTHYI 86 (123)
Q Consensus 75 ~g~tviivtH~~ 86 (123)
.+.+|++|||-.
T Consensus 197 ~~~~vlvVsHg~ 208 (268)
T 4eo9_A 197 TGRTVLIVAHGN 208 (268)
T ss_dssp TTCCEEEEECHH
T ss_pred CCCEEEEEeCHH
Confidence 578999999954
No 469
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=20.63 E-value=1.8e+02 Score=21.27 Aligned_cols=37 Identities=8% Similarity=0.254 Sum_probs=27.0
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHhhC-C-cEEEEEe
Q psy6940 47 LVILDEP--TSGLDPVLANIFWRYLNRLSVQ-G-QTIIITT 83 (123)
Q Consensus 47 lliLDEP--t~gLD~~~~~~i~~~l~~l~~~-g-~tviivt 83 (123)
++-||-| -+.|++.....+.+.+.++..+ . +.||++.
T Consensus 21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 61 (267)
T 3r9t_A 21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTG 61 (267)
T ss_dssp EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 3556766 6999999999999999988754 4 3444444
No 470
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=20.57 E-value=68 Score=25.91 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.0
Q ss_pred cCCCEEEEeCCCCCCC
Q psy6940 43 HSPSLVILDEPTSGLD 58 (123)
Q Consensus 43 ~~p~lliLDEPt~gLD 58 (123)
...|++++|=|++|.-
T Consensus 174 ~~FD~Il~DaPCSg~G 189 (456)
T 3m4x_A 174 GFFDRIVVDAPCSGEG 189 (456)
T ss_dssp TCEEEEEEECCCCCGG
T ss_pred ccCCEEEECCCCCCcc
Confidence 4569999999988764
No 471
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=20.49 E-value=2.3e+02 Score=20.58 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=27.5
Q ss_pred EEEEeCCC-CCCCHHHHHHHHHHHHHHhhC-C-cEEEEEe
Q psy6940 47 LVILDEPT-SGLDPVLANIFWRYLNRLSVQ-G-QTIIITT 83 (123)
Q Consensus 47 lliLDEPt-~gLD~~~~~~i~~~l~~l~~~-g-~tviivt 83 (123)
++-||-|- +.+++.....+.+.+.++..+ . +.||++.
T Consensus 19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg 58 (263)
T 3l3s_A 19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHG 58 (263)
T ss_dssp EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 35677775 899999999999999988754 4 3444444
No 472
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=20.34 E-value=1.2e+02 Score=24.75 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=32.1
Q ss_pred HhcCCCEEEEeCCCCC----------C-CHHH--------HHHHHHHHHHHhhCCcEEEEEeCCHHHH
Q psy6940 41 LLHSPSLVILDEPTSG----------L-DPVL--------ANIFWRYLNRLSVQGQTIIITTHYIEEA 89 (123)
Q Consensus 41 L~~~p~lliLDEPt~g----------L-D~~~--------~~~i~~~l~~l~~~g~tviivtH~~~~~ 89 (123)
-+.+|+++++|-|... + ++.. ++.+.+.+.++.+.|..++++.-.++.+
T Consensus 222 ~~en~kIll~~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dl 289 (515)
T 3iyg_H 222 KYHNPMIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDV 289 (515)
T ss_pred cccccEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHH
Confidence 3679999999998432 1 1111 2234666777777788999987766543
No 473
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.13 E-value=1.2e+02 Score=20.19 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCcEEEEEeCCH-HHHHh-hccee
Q psy6940 64 IFWRYLNRLSVQGQTIIITTHYI-EEARQ-ANTVF 96 (123)
Q Consensus 64 ~i~~~l~~l~~~g~tviivtH~~-~~~~~-~d~v~ 96 (123)
.+.+.++..++.|..+|.+|.+. ..+.. ||.++
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l 136 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSVSPPARIADHVL 136 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEE
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEE
Confidence 45666666666788888888754 44555 88777
No 474
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=20.10 E-value=1.9e+02 Score=21.53 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=26.5
Q ss_pred EEEEe---CCCCCCCHHHHHHHHHHHHHHhhC-CcEEEEEe
Q psy6940 47 LVILD---EPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITT 83 (123)
Q Consensus 47 lliLD---EPt~gLD~~~~~~i~~~l~~l~~~-g~tviivt 83 (123)
++-|+ ++-+.|++.....+.+.+.++..+ .+.||++.
T Consensus 35 ~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~r~vVltg 75 (291)
T 2fbm_A 35 QIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSA 75 (291)
T ss_dssp EEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 35566 456999999999999988887654 45555554
Done!