RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6940
(123 letters)
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 92.1 bits (230), Expect = 7e-25
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 22 LLPNWTV-------GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV 74
L N TV GG +R+++A LLH P L+ILDEPTSGLDP FW L L
Sbjct: 84 LYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK 143
Query: 75 QGQTIIITTHYIEEARQ 91
+G+TI++++H +EEA +
Sbjct: 144 EGKTILLSSHILEEAER 160
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 93.9 bits (234), Expect = 2e-24
Identities = 33/62 (53%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIITTHYIE 87
GG +R+SIA+ LLH P L+ILDEPTSGLDP W L L+ +G TI+++TH +E
Sbjct: 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE 198
Query: 88 EA 89
EA
Sbjct: 199 EA 200
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 83.1 bits (206), Expect = 2e-21
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV++A LL +P L++LDEPTSGLDP L L+ +G+T+II TH E
Sbjct: 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142
Query: 89 ARQA 92
A A
Sbjct: 143 AELA 146
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 77.2 bits (191), Expect = 8e-19
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RVSIA+ L+ +PSL+ LDEPTSGLD A L RL+ G+TII + H
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 79.0 bits (195), Expect = 9e-19
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+ IA +L+H P ++ LDEPT+GLDP W Y+ L +G TI++TTHY+EE
Sbjct: 127 GGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEE 186
Query: 89 ARQ 91
A +
Sbjct: 187 ADK 189
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 77.1 bits (191), Expect = 1e-18
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV+IA L P +++LDEPT+GLDP L +L +G+TIII TH ++
Sbjct: 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL 196
Query: 89 ARQ 91
+
Sbjct: 197 LLE 199
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 77.2 bits (191), Expect = 1e-18
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG R++S+A+ L+ PS+++LDEPTSGLDP W + + +G++II+TTH ++E
Sbjct: 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RKGRSIILTTHSMDE 194
Query: 89 A 89
A
Sbjct: 195 A 195
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 74.3 bits (183), Expect = 2e-17
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTHYIE 87
GG RR+ IA +L+H P ++ LDEPT GLDP W Y+ +L G TI++TTHY+E
Sbjct: 134 GGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME 193
Query: 88 EARQ 91
EA Q
Sbjct: 194 EAEQ 197
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 70.6 bits (173), Expect = 1e-15
Identities = 30/61 (49%), Positives = 45/61 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 234
Query: 89 A 89
A
Sbjct: 235 A 235
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 68.2 bits (168), Expect = 1e-15
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL P ++ILDE TS LDP + L L+ +G+T+I+ H +
Sbjct: 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST 157
Query: 89 ARQANTVF 96
R A+ +
Sbjct: 158 IRDADRII 165
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 68.8 bits (169), Expect = 3e-15
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R AE L L P GGQ +RV+IA L P +++LDEPT+GLDP
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 66 WRYLNRLSVQ-GQTIIITTHYIEEA 89
L +L + G+TIII TH +E
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELV 202
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 69.1 bits (169), Expect = 4e-15
Identities = 28/61 (45%), Positives = 45/61 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P +++LDEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200
Query: 89 A 89
A
Sbjct: 201 A 201
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 68.6 bits (168), Expect = 5e-15
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 9/92 (9%)
Query: 1 MSLLLRPAEILTRTRDFALRKL--------LPNWTVGGQVRRVSIAVTLLHSPSLVILDE 52
++L L E+ R ++ AL+ + P+ GGQ +RV+IA L P +++LDE
Sbjct: 105 LNLGLSKEEVEKRVKE-ALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE 163
Query: 53 PTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
PTSGLDP+ A+ + L L+ +G TIII+TH
Sbjct: 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 68.4 bits (167), Expect = 8e-15
Identities = 30/61 (49%), Positives = 45/61 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG RR+++A L++ P L+ILDEPT+GLDP ++ W L L +G+TI++TTH++EE
Sbjct: 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197
Query: 89 A 89
A
Sbjct: 198 A 198
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 66.1 bits (162), Expect = 2e-14
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ RRVSIAV LL P ++ILDEPTSGLD A L++L+ + + +I+T H
Sbjct: 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIH 201
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 65.3 bits (160), Expect = 4e-14
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GG RRV IA L+ PS++I+DEPT+GLDP F L+ L + + +I++TH +E
Sbjct: 133 GGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVE 190
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 64.5 bits (158), Expect = 4e-14
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 22 LLPNWTV---------GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL 72
L P+ TV GGQ +RV++A L P +++LDEPTS LDP+ L L
Sbjct: 87 LFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSL 146
Query: 73 SVQ-GQTIIITTHYIEEAR 90
Q G T+++ TH ++EA
Sbjct: 147 QAQLGITVVLVTHDLDEAA 165
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 65.5 bits (160), Expect = 6e-14
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 18/102 (17%)
Query: 7 PAEILTRTRDFAL--------RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
P EI R D +L R+ P+ GGQ +RV+IA L P +I DEPT+ LD
Sbjct: 118 PEEIRERV-DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 59 P-----VLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTV 95
P V+ I + LN+ G TII+ THY+EEA +A+ +
Sbjct: 177 PSGRREVVNTI--KELNKKY--GITIILITHYMEEAVEADRI 214
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 64.2 bits (157), Expect = 1e-13
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
G ++V ++H P L+ILDEP SGLDPV + + L+ G+T+I++TH +E
Sbjct: 131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL 190
Query: 89 A 89
Sbjct: 191 V 191
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 62.8 bits (153), Expect = 3e-13
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 1 MSLLLRPAEILTRTRD-------FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEP 53
++L L AE+ R R+ LR+ + GG+ +RV+IA + P +++LDEP
Sbjct: 95 LNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154
Query: 54 TSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
T+GLDP L RL +G T++I+TH ++ A
Sbjct: 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 62.0 bits (151), Expect = 6e-13
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G ++V+IA L+H P +++LDEPT+GLD + ++ +L G+ I+ +TH ++E
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEV 199
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 61.1 bits (149), Expect = 1e-12
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R++IA LL L+I DEPTSGLD + + L+ QG+ +I+ TH
Sbjct: 129 GGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI----RELAAQGKAVIVITH 184
Query: 85 YIE 87
E
Sbjct: 185 DYE 187
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 61.1 bits (148), Expect = 2e-12
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RVSIA L P +++ DEPTS LDP L R + +L+ +G+T+++ TH +
Sbjct: 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 214
Query: 89 ARQANT 94
AR ++
Sbjct: 215 ARHVSS 220
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 59.9 bits (146), Expect = 2e-12
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 31 QVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
Q +R++I V L PS++ LDEPTSGLD A R+L +L+ GQ I+ T H
Sbjct: 113 QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 60.2 bits (147), Expect = 3e-12
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +RV+IA L+++P +++ DEPT LD A L L+ + G+TII+ TH E
Sbjct: 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204
Query: 88 EARQANTV 95
A+ A+ V
Sbjct: 205 LAKYADRV 212
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 60.8 bits (148), Expect = 4e-12
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 16/87 (18%)
Query: 7 PAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LA 62
P E+L R+ F L GGQ+RRV+IA L P +++LDEPT+GLDP +
Sbjct: 135 PEELLARS-PFELS--------GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMM 185
Query: 63 NIFWRYLNRLSVQGQTIIITTHYIEEA 89
+F++ L++ +G T ++ TH +E+A
Sbjct: 186 EMFYK-LHK--EKGLTTVLVTHSMEDA 209
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 60.1 bits (146), Expect = 5e-12
Identities = 23/60 (38%), Positives = 40/60 (66%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G ++V+IA L+H PS+++LDEPTSGLD F ++ +L +G+ +I ++H ++E
Sbjct: 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 59.5 bits (145), Expect = 6e-12
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +RV +A L+ P L++LDEP +G+DP + L L +G TI++ TH
Sbjct: 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 59.4 bits (145), Expect = 7e-12
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYIE 87
GG +RV++A L P L++ DEPT+GLDP+ + + + L G T I+ TH ++
Sbjct: 139 GGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD 198
Query: 88 EARQA 92
A
Sbjct: 199 TAFAI 203
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 59.0 bits (144), Expect = 7e-12
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYIE 87
GGQ +RV+IA L + P +++ DEPT LD L L+ G TI++ TH E
Sbjct: 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE 202
Query: 88 EARQA 92
A A
Sbjct: 203 LAEYA 207
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 59.7 bits (145), Expect = 7e-12
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 5 LRPAEILTRTRD-------FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGL 57
L E+ R + + R P GQ +RV+IA L P +++LDEP + L
Sbjct: 110 LDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYL 169
Query: 58 DPVLANIFWRYLNRLSVQGQTIIITTH 84
DP L+RL QG+T+I+ TH
Sbjct: 170 DPRGQETLMEILDRLHNQGKTVIVATH 196
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 59.7 bits (145), Expect = 9e-12
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTH 84
GGQ RRV++A L P ++ DEPT+GLDP + IF + L+ QG+TII+ TH
Sbjct: 168 GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIF----DNLNKQGKTIILVTH 223
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 60.0 bits (146), Expect = 9e-12
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+++A LL SL++LDEPT+ LD I + L L+ + +T+++ TH +E+
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLED 517
Query: 89 ARQANTVF 96
A A+ +
Sbjct: 518 AADADRIV 525
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 60.1 bits (146), Expect = 1e-11
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +R++ A LL P L+ DEPTSGLD +A + L L+ +G+TII T H
Sbjct: 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 58.5 bits (142), Expect = 1e-11
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 1 MSLLLRPAEILTRTRDFALRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGL 57
+ E+L L LL P GG+ +RV++A L P L++LDEP S L
Sbjct: 106 REDRISVDELLDL---LGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162
Query: 58 DPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
D L L ++ +I TH + EA
Sbjct: 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 58.4 bits (142), Expect = 2e-11
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
LP+ GG+ +RV+IA +++ P++++ DEPT LDP L+ R ++ G T+++
Sbjct: 134 LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMA 193
Query: 83 TH 84
TH
Sbjct: 194 TH 195
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 58.7 bits (143), Expect = 2e-11
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV+IA L P +++ DEPTS LDP L + L+ +G T+II TH +
Sbjct: 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198
Query: 89 ARQ 91
AR+
Sbjct: 199 ARE 201
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 58.7 bits (143), Expect = 2e-11
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +RV+IA L+ P L++ DEP + LDP + L R++ + G T+I++ H ++
Sbjct: 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD 206
Query: 88 EARQ 91
AR+
Sbjct: 207 LARE 210
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 58.0 bits (141), Expect = 2e-11
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ +RV++A +L P L++ DEPT LDP + L L+ +G+TIII TH E
Sbjct: 137 GGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV 196
Query: 89 ARQANTV 95
A+QA+ V
Sbjct: 197 AKQADRV 203
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 58.7 bits (142), Expect = 2e-11
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQ 77
LR +P+ GG+ +RV+IA + P +++LDEPT+GLDP +LN L G
Sbjct: 130 LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGM 189
Query: 78 TIIITTHYIE 87
T+I +TH ++
Sbjct: 190 TVIFSTHQLD 199
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 57.9 bits (141), Expect = 2e-11
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV+IA L +P +++ DEPTS LDP L + L+ +G T+++ TH +
Sbjct: 138 GGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197
Query: 89 ARQA 92
AR+
Sbjct: 198 AREV 201
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 58.1 bits (141), Expect = 2e-11
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +RV+IA L P L++ DEP + LDP + YL R++ + G T+II H ++
Sbjct: 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD 207
Query: 88 EAR 90
A+
Sbjct: 208 LAK 210
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 58.4 bits (142), Expect = 2e-11
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV +A L +P L++LDEP +G+D + L L +G+T+++ TH +
Sbjct: 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL 201
Query: 89 ARQ 91
Sbjct: 202 VMA 204
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 58.2 bits (141), Expect = 3e-11
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 9/73 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTH 84
GGQ+RRV+IA L P +++LDEPT+GLDP L +F +L G TI++ TH
Sbjct: 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLF----KKLHQSGMTIVLVTH 203
Query: 85 YIEE-ARQANTVF 96
+++ A A+ V+
Sbjct: 204 LMDDVANYADFVY 216
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 57.8 bits (140), Expect = 3e-11
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
P+ GGQ +RV+IA L P L++ DEPTS LDP L + + + L+ +G T++I T
Sbjct: 134 PSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVT 193
Query: 84 HYIEEARQANT 94
H I A + +
Sbjct: 194 HEIGFAEKVAS 204
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 58.0 bits (141), Expect = 3e-11
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYIE 87
GGQ +RV+IA L+ P +++ DEP + LDP A L ++ G T+I+ H ++
Sbjct: 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209
Query: 88 EARQ 91
A++
Sbjct: 210 LAKK 213
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 57.5 bits (139), Expect = 4e-11
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY 68
I+ +++A R + GG+ +RVSIA TL ++P +++LDEPTS LDP I
Sbjct: 116 SIVGLNKEYATRDV--KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173
Query: 69 LNRLSVQ-GQTIIITTHYIEEARQ 91
+ +L + T+I TH +E+A++
Sbjct: 174 IVKLKNKMNLTVIWITHNMEQAKR 197
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 57.3 bits (139), Expect = 5e-11
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 4 LLRPAEILTRT-----RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
R AE+L R D +R+L GG RRV IA LLH P+L++LDEPT GLD
Sbjct: 110 RARIAELLARLGLAERADDKVREL-----NGGHRRRVEIARALLHRPALLLLDEPTVGLD 164
Query: 59 PVLANIFWRYLNRLSV-QGQTIIITTHYIEEARQANTV 95
P ++ L+ QG +++ TH ++E + +
Sbjct: 165 PASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRL 202
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 57.3 bits (139), Expect = 6e-11
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 13 RTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWR 67
DF R+ P+ GGQ +RV+IA L P ++ILDE TS LDP VL + R
Sbjct: 129 GMEDFLNRE--PHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV--R 184
Query: 68 YLNRLSVQGQTIIITTHYIEEARQANTV 95
L +G T++ TH ++EA QA+ V
Sbjct: 185 QLKE--QKGITVLSITHDLDEAAQADRV 210
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 56.5 bits (137), Expect = 7e-11
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ +RV+IA +++SP L++ DEPT LDP L+ L RL+ +G T+I+ TH +
Sbjct: 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL 199
Query: 89 ARQ 91
+
Sbjct: 200 VDR 202
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 57.3 bits (139), Expect = 8e-11
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+++A L L++LDEPT+ LD L L+ QG+T+++ TH +
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRLAL 519
Query: 89 ARQANTV 95
A A+ +
Sbjct: 520 AALADRI 526
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 56.8 bits (138), Expect = 8e-11
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GG +RV++A + P L+ LDEPTSGLDP+ A + + L+ G T+I+ TH ++
Sbjct: 148 GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207
Query: 88 EAR 90
Sbjct: 208 SLL 210
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 57.0 bits (138), Expect = 8e-11
Identities = 25/66 (37%), Positives = 41/66 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV+IA L P +++ DEPTS LDP L + + L+ +G+T+++ TH +
Sbjct: 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF 214
Query: 89 ARQANT 94
AR ++
Sbjct: 215 ARDVSS 220
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 55.5 bits (135), Expect = 9e-11
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
G+ + V IA L + L+ILDEPT+ L P ++ + RL QG +I +H ++E
Sbjct: 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144
Query: 89 ARQ 91
+
Sbjct: 145 VFE 147
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 57.2 bits (139), Expect = 9e-11
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R+++A LL P +++LDE TS LDP I + L ++ QG+T+II H
Sbjct: 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAH 666
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 56.2 bits (136), Expect = 1e-10
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 6 RPAEILTRTR--DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
R ++L R R +A R P GGQ +RV+IA L+ P +++ DEPT+ LDP +
Sbjct: 121 RAEKLLERLRLKPYADR--FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178
Query: 64 IFWRYLNRLSVQGQTIIITTHYIEEARQANT 94
+ L+ G T +I TH +E AR+ +
Sbjct: 179 QIVSIIRELAETGITQVIVTHEVEVARKTAS 209
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 56.9 bits (137), Expect = 1e-10
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Query: 7 PAEILTRTRDFALRKL--------LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
PAE + + +++++ L L GG R++S A+ L+ P LV+LDEPT+G+D
Sbjct: 2043 PAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
Query: 59 PVLANIFWRYLNRLSVQGQTIIITTHYIEE-----ARQANTVFGGF 99
P + W + + +G+ +++T+H +EE R A V G F
Sbjct: 2103 PQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAF 2148
Score = 53.9 bits (129), Expect = 2e-09
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG R++S+A+ + +V+LDEPTSG+DP W L + G+TII++TH+++E
Sbjct: 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDE 1122
Query: 89 A 89
A
Sbjct: 1123 A 1123
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 55.7 bits (135), Expect = 1e-10
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYLNRLSVQGQTIIITTHYIEEARQ 91
R+ IA+ LL +P L+ILDEPT+GLDP I + L QG T++I++H + E ++
Sbjct: 134 RLGIALALLGNPDLLILDEPTNGLDP--DGIKELRELILSLRDQGITVLISSHLLSEIQK 191
Query: 92 ANTVFG 97
G
Sbjct: 192 VADRIG 197
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 56.6 bits (137), Expect = 2e-10
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS--VQGQTIIITTHYI 86
GG+ RR+++A LLH L +LDEPT GLDP+ + L L +G+T+++ TH +
Sbjct: 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITER---QVLALLFEHAEGKTLLMVTHRL 533
Query: 87 EEARQANTV 95
+ + +
Sbjct: 534 RGLERMDRI 542
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 55.4 bits (134), Expect = 3e-10
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV--QGQTIIITTHYIE 87
G+ RRV IA L+ P L+ILDEP GLD + L L+ ++ TH+ E
Sbjct: 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234
Query: 88 EA 89
E
Sbjct: 235 EI 236
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 55.4 bits (134), Expect = 4e-10
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G +++ ++H P L+ILDEP SGLDPV + + L +G TII ++H +E
Sbjct: 134 GNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 55.7 bits (134), Expect = 4e-10
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RVSIA +L +PSL+ILDEPTSGLD A L L+ +G+TI+ + H
Sbjct: 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 54.7 bits (132), Expect = 4e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G +R+ IA+ LL+ P L+ILDEPT+GLDP+ + QG T+I+++H + E
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEV 187
Query: 90 RQ 91
+Q
Sbjct: 188 QQ 189
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 54.8 bits (132), Expect = 4e-10
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 6 RPAEILTRTR--DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
R ++L R R +A R P GGQ +RV+IA L+ P +++ DEPT+ LDP +
Sbjct: 121 RAEKLLKRLRLKPYADR--YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178
Query: 64 IFWRYLNRLSVQGQTIIITTHYIEEARQANT 94
+ L+ G T +I TH +E AR+ +
Sbjct: 179 QIVSIIKELAETGITQVIVTHEVEVARKTAS 209
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 55.3 bits (134), Expect = 4e-10
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTH 84
GG +RV IA+ L +P L+I DEPT+ LD + L L +G +I+ TH
Sbjct: 156 GGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 54.3 bits (131), Expect = 4e-10
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
LP GG+ +RV+IA +++SP+++I DEPT LDP L +++ G T+++
Sbjct: 133 LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVA 192
Query: 83 TH 84
TH
Sbjct: 193 TH 194
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 54.4 bits (132), Expect = 4e-10
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GG +RV++A L P +++LDEP S LD + L + + G+T+++ TH I+
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID 193
Query: 88 EA 89
EA
Sbjct: 194 EA 195
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 54.5 bits (131), Expect = 5e-10
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P +++LDEPTS LDP+ + L LS + TI+I TH I +
Sbjct: 149 GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-ENYTIVIVTHNIGQ 207
Query: 89 A 89
A
Sbjct: 208 A 208
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 54.8 bits (132), Expect = 6e-10
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYIE 87
GGQ+R+++I L +P +++LDEPT+GLDP R L L + +TII+ +H +
Sbjct: 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207
Query: 88 E-ARQANTV 95
E AR A+ V
Sbjct: 208 EVARYADEV 216
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 54.0 bits (131), Expect = 7e-10
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 1 MSLLLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60
+ + P E+L R P+ GGQ +RV+IA L +P L+I DEPTS LD
Sbjct: 129 LVGVGLPEEVLNR---------YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVS 179
Query: 61 L-ANIFWRYLNRLSVQ-GQTIIITTH 84
+ A I L +L + G T++ TH
Sbjct: 180 VQAQIL-DLLKKLQEELGLTLLFITH 204
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 54.0 bits (130), Expect = 8e-10
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIIT 82
PN GGQ +RV+IA L +PS++ILDE TS LDP + ++ + TII
Sbjct: 140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISI 199
Query: 83 THYIEEARQANTV 95
TH + EA +A+ V
Sbjct: 200 THDLSEAMEADHV 212
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 54.5 bits (131), Expect = 8e-10
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ RRV+IA L P ++I DEPT+GLDP + + + +T+ + TH +E
Sbjct: 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 54.1 bits (130), Expect = 9e-10
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV-LANI 64
R L RT L+ + GQ +RV+IA L+ P +++LDEPT+GLDP+ ++ I
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
Query: 65 FWRYLNRLSVQGQTIIITTHYIE 87
+ G TIII TH I+
Sbjct: 181 MKLLVEMQKELGLTIIIATHDID 203
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 54.4 bits (130), Expect = 9e-10
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ+RRV+IA L P +++LDEPT+GLDP + + GQT+++ TH +++
Sbjct: 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 53.5 bits (129), Expect = 1e-09
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLD-PVLANI--FWRYLNRLSVQGQTIIITTHYI 86
GQ R IA LLH P ++ LDEPT GLD NI F + NR +G T+++T+HY+
Sbjct: 157 GQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE--RGTTVLLTSHYM 214
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 54.1 bits (131), Expect = 1e-09
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ + V++A LL P +++LDEPTS +D F L R G+T+++ TH
Sbjct: 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTH 658
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 53.7 bits (129), Expect = 1e-09
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIIT 82
P GGQ +RV+IA L P ++ILDE TS LDP + + +L + T+I
Sbjct: 141 PANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI 200
Query: 83 THYIEEARQANTVFGGFFAPKLHLSLNESELL 114
TH I+EA A+ V L L++ +LL
Sbjct: 201 THDIDEANMADQV----------LVLDDGKLL 222
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 52.4 bits (127), Expect = 2e-09
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ + ++IA L+ P L++LDEP+ GL P + + + L +G TI++
Sbjct: 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194
Query: 89 ARQ 91
A +
Sbjct: 195 ALE 197
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 52.5 bits (127), Expect = 2e-09
Identities = 33/85 (38%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R E+L L P+ GGQ +RV++A L PSL++LDEP S LD L
Sbjct: 110 RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
Query: 66 WRYLNRLSVQ-GQTIIITTHYIEEA 89
L L + G T I TH EEA
Sbjct: 170 REELKELQRELGITTIYVTHDQEEA 194
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 52.6 bits (127), Expect = 3e-09
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTHYIE 87
GG +RV+IA L P L++LDEP LD + L RL +T+++ TH ++
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192
Query: 88 EA 89
EA
Sbjct: 193 EA 194
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 52.6 bits (127), Expect = 3e-09
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 8 AEILTRTRDFA----LRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60
AEI R ++ A L LL P GGQ +RV++A L+ P + +LDEP S LD
Sbjct: 108 AEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 61 LANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
L + + +L + G T I TH EA
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEA 197
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 51.4 bits (124), Expect = 3e-09
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ +A L +P +++LDEP S LD + + L G T I+ H E
Sbjct: 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPET 158
Query: 89 ARQANTV 95
A+ +
Sbjct: 159 LASADRI 165
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 52.2 bits (126), Expect = 3e-09
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 11 LTRTRDFALRKLLPNWTV--GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLAN 63
L A R GG+ +RV IA L +++LDEPTS LD VL
Sbjct: 125 LLGLEHLADR----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL 180
Query: 64 IFWRYLNRLSVQGQTIIITTHYIEEA 89
+ R LNR +G T+++ H + A
Sbjct: 181 L--RDLNRE--KGLTVVMVLHDLNLA 202
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 52.5 bits (127), Expect = 4e-09
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
Q + V IA L ++ILDEPT+ L + + RL QG II +H ++E
Sbjct: 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE 207
Query: 89 ARQ 91
+
Sbjct: 208 VFE 210
Score = 42.5 bits (101), Expect = 1e-05
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLA--NIFWRYLNRLSVQGQTIIITTHYI 86
GG ++V +A L P ++ILDEPT G+D V A I+ R + L+ +G+ I++ + +
Sbjct: 404 GGNQQKVVLARWLATDPKVLILDEPTRGID-VGAKAEIY-RLIRELAAEGKAILMISSEL 461
Query: 87 EEA 89
E
Sbjct: 462 PEL 464
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 52.0 bits (125), Expect = 5e-09
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 10/74 (13%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITT 83
GGQ RRV+IA + P ++ILDEPT+GLDP +L I + L++ TII+ +
Sbjct: 147 GGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKI--KELHK--EYNMTIILVS 202
Query: 84 HYIEE-ARQANTVF 96
H +E+ A+ A+ +
Sbjct: 203 HSMEDVAKLADRII 216
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 52.1 bits (125), Expect = 5e-09
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYLNRLSVQGQTIIITTHYIEE 88
G +RV +A L+H P ++ILDEPT+GLDP L I R + + + +TII++TH ++E
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI--RNVIKNIGKDKTIILSTHIMQE 194
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 51.4 bits (123), Expect = 6e-09
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA T+ P ++++DEPTS LDP+ + + L + TI+I TH +++
Sbjct: 148 GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK-KNYTIVIVTHSMQQ 206
Query: 89 ARQ 91
AR+
Sbjct: 207 ARR 209
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 51.8 bits (125), Expect = 7e-09
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GG +RV IA+ L P L+I DEPT+ LD L L + G ++ TH +
Sbjct: 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216
Score = 49.1 bits (118), Expect = 6e-08
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 6 RPAEILTRT---RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VL 61
R AE+L +F R P+ GGQ +RV+IA L P L+ILDEP S LD V
Sbjct: 408 RVAELLELVGLPPEFLDRY--PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQ 465
Query: 62 ANIFWRYLNRL-SVQGQTIIITTH 84
A + L L G T + +H
Sbjct: 466 AQVL-NLLKDLQEELGLTYLFISH 488
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 51.0 bits (123), Expect = 8e-09
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ +A L + P +++LDEPTS LDP+ + L + TI+I TH +++
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQ 202
Query: 89 A 89
A
Sbjct: 203 A 203
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 51.3 bits (123), Expect = 8e-09
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV IA L SP +++LDEPTS LDP+ A L L T+++ T +++
Sbjct: 151 GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-DDYTMLLVTRSMQQ 209
Query: 89 A 89
A
Sbjct: 210 A 210
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 51.6 bits (124), Expect = 9e-09
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 31 QVRRVSIAVTLLHSP-SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
Q +R++I V L+ P L+ LDEPTSGLD A + + +L+ GQ I+ T H
Sbjct: 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960
Score = 30.5 bits (69), Expect = 0.19
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYL 69
GG+ +RVSIA L + D T GLD A F R L
Sbjct: 212 GGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 51.0 bits (122), Expect = 1e-08
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTH 84
GGQ+RRV+IA + + P ++ LDEP +GLDP + +F Y G T+I+ TH
Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY----QKAGHTVILVTH 203
Query: 85 YIEE-ARQANTV 95
+++ A A+ V
Sbjct: 204 NMDDVAEYADDV 215
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 50.7 bits (122), Expect = 1e-08
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +R I LL P L ILDEP SGLD I +N L +G+ ++I THY
Sbjct: 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHY 203
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 50.7 bits (122), Expect = 1e-08
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-T 78
P+ GGQ +R++IA L+ P L+ILDEPTS LD + L L + T
Sbjct: 135 LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLT 194
Query: 79 IIITTH 84
+ +H
Sbjct: 195 YLFISH 200
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 50.2 bits (121), Expect = 1e-08
Identities = 24/57 (42%), Positives = 34/57 (59%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +R I LL P L ILDEP SGLD + +N+L +G++++I THY
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 50.8 bits (122), Expect = 1e-08
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIITTHYIE 87
GGQ +RV+IA L +P ++I DE TS LDP + + L +T+I TH ++
Sbjct: 145 GGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD 204
Query: 88 EARQANTV 95
EA A+ V
Sbjct: 205 EAILADKV 212
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 50.8 bits (121), Expect = 1e-08
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P L++LDEPTS LDP+ + + L LS ++I+ TH +++
Sbjct: 145 GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQ 203
Query: 89 ARQ 91
++
Sbjct: 204 GKR 206
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 50.8 bits (121), Expect = 1e-08
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 2 SLLLRPAEILTRTRDFAL--------RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEP 53
+L L P EI R D AL R P GGQ + V++A L P +I DE
Sbjct: 105 NLCLPPIEIRKRV-DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV 163
Query: 54 TSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTV 95
TS LDP + +L +G+TI+ TH +EE A+ +
Sbjct: 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRI 205
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 50.9 bits (122), Expect = 2e-08
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
P+ GGQ +RVSIA L++ +++ DEPT LD L++L +G T+II T
Sbjct: 142 PSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVT 201
Query: 84 HYIEEARQANTV 95
H + A QA V
Sbjct: 202 HDPQVAAQAERV 213
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 50.5 bits (121), Expect = 2e-08
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV+IA L P +++ DEPTS LDP L + +L+ + +T++I TH +
Sbjct: 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206
Query: 89 AR 90
AR
Sbjct: 207 AR 208
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 50.4 bits (121), Expect = 2e-08
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 21/85 (24%)
Query: 15 RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV 74
++A R P+ GGQ +RV +A L P ++++DEP LDP+ R +
Sbjct: 126 SEYADR--YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPI---------TRKQL 174
Query: 75 Q----------GQTIIITTHYIEEA 89
Q G+TI+ TH I+EA
Sbjct: 175 QEEIKELQKELGKTIVFVTHDIDEA 199
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 50.0 bits (120), Expect = 2e-08
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYIE 87
GG+ +RV+IA L++ PSLV+ DEPT LD A I + + L+ + ++ TH +E
Sbjct: 144 GGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203
Query: 88 EARQANTVF 96
A++ + V
Sbjct: 204 LAKKLDRVL 212
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 50.6 bits (122), Expect = 2e-08
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GQ +R+++A LL L++LDEPT+ LD + + LN S + QT ++ TH +E+
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED 546
Query: 89 ARQANTV 95
Q + +
Sbjct: 547 LAQWDQI 553
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 50.0 bits (119), Expect = 2e-08
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + SPS++++DEP S LDP+ ++ L + TI+I TH +++
Sbjct: 149 GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQ 207
Query: 89 ARQANTVFGGFF 100
A + + F+
Sbjct: 208 AARVSDKTAFFY 219
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 50.0 bits (119), Expect = 3e-08
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +RV IA L P +++LDEPTS LDP+ + L L Q TII+ TH + +
Sbjct: 151 GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQ-YTIILVTHSMHQ 209
Query: 89 ARQANTVFGGF-------FAPKLHLSLNESE 112
A + + F FA + LN E
Sbjct: 210 ASRISDKTAFFLTGNLIEFADTKQMFLNPKE 240
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 49.5 bits (119), Expect = 3e-08
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ + V++A LL+ P +++LDEPTS +D L +L + +T+II TH
Sbjct: 143 GGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL-LGDKTLIIITH 197
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 50.2 bits (121), Expect = 3e-08
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86
+VG Q +RV I L L+ILDEPT+ L P A+ + L RL+ +G+TII TH +
Sbjct: 142 SVGEQ-QRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL 200
Query: 87 EEARQ 91
+E
Sbjct: 201 KEVMA 205
Score = 30.6 bits (70), Expect = 0.17
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG +++ +A L P L+I +PT GLD
Sbjct: 406 GGNQQKLILARELARRPDLLIAAQPTRGLD 435
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 49.7 bits (120), Expect = 3e-08
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GQ RR+ IA L P L++LDEP +GL+P + L +G T+++ H
Sbjct: 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEH 201
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 49.6 bits (118), Expect = 3e-08
Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA T+ SP ++++DEP S LDP+ +++L + TI+I TH +++
Sbjct: 149 GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-EDYTIVIVTHNMQQ 207
Query: 89 ARQANTVFGGFFAPKLHLSLNESEL 113
A + + + FF L+ + ES L
Sbjct: 208 ATRVSK-YTSFF---LNGEIIESGL 228
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 50.0 bits (119), Expect = 3e-08
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI-IITTHYIE 87
GGQ +R+SIA ++ +P ++ILDE TS LD + + +N L I II H +
Sbjct: 582 GGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS 641
Query: 88 EARQANTVF 96
R ANT+F
Sbjct: 642 TIRYANTIF 650
Score = 39.6 bits (92), Expect = 1e-04
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIITTHYIE 87
GGQ +R++IA LL P +++LDE TS LD + + + + + +TII H I
Sbjct: 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA 1420
Query: 88 EARQANTV 95
++++ +
Sbjct: 1421 SIKRSDKI 1428
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 49.8 bits (119), Expect = 3e-08
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+H+P ++I DE TS LD + R ++ + G+T+II H +
Sbjct: 141 GGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLST 199
Query: 89 ARQANTV 95
+ A+ +
Sbjct: 200 VKNADRI 206
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 48.8 bits (117), Expect = 3e-08
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTH 84
GG+ +R+++A LL +V+LDEPT GLDP+ L ++ + L + +T+I TH
Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-----KDKTLIWITH 155
Query: 85 YIEEARQANTV 95
++ + +
Sbjct: 156 HLTGIEHMDKI 166
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 49.3 bits (118), Expect = 4e-08
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + P ++++DEP S LDP+ + L + TIII TH +++
Sbjct: 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQ 224
Query: 89 ARQANTVFGGFF 100
A +A+ + FF
Sbjct: 225 AARASD-YTAFF 235
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 49.2 bits (118), Expect = 4e-08
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIII 81
P+ GGQ +RV+IA L+H P LV+ DEPT+ LD + +L+ QG TI+I
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 82 TTH 84
TH
Sbjct: 198 VTH 200
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 49.8 bits (119), Expect = 4e-08
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 31 QVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
Q +R++IAV L+ +PS++ +DEPTSGLD A I R + G+T++ T H
Sbjct: 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 49.2 bits (118), Expect = 5e-08
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P +++LDEPTS LDP+ + L + TI+I TH +++
Sbjct: 147 GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-KKYTIVIVTHNMQQ 205
Query: 89 AR 90
A
Sbjct: 206 AA 207
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 48.6 bits (116), Expect = 6e-08
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 10 ILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYL 69
L R L K LP GG+ +RV++A L+ +++LDEP + LDP L +
Sbjct: 112 ALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
Query: 70 NRLSVQ-GQTIIITTHYIEEARQ--ANTVF 96
L + T+++ TH E+A++ VF
Sbjct: 172 LDLHAETKMTVLMVTHQPEDAKRLAQRVVF 201
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.9 bits (117), Expect = 6e-08
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEPTS LDP+ + L + TI+I TH +++
Sbjct: 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQQ 207
Query: 89 A 89
A
Sbjct: 208 A 208
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 48.9 bits (117), Expect = 6e-08
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLA--NI--FWRYLNRLSVQGQTIIITTHY 85
GQ R +A LLH P ++ LDEPT GLD V A NI F + N + T+++TTH
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLD-VNAQANIREFLKEYNE--ERQATVLLTTHI 216
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 48.8 bits (116), Expect = 7e-08
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 5 LRPAEILTRTRDFALRKLLPNWTV-GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
LR A + T D R P ++ GGQ +R+ IA TL P +++ DEPTS LDP+
Sbjct: 135 LRSAALWDETSD---RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA 191
Query: 64 IFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFF 100
+ L + TI+I TH +++A + + + GFF
Sbjct: 192 RIEDLIMNLK-KDYTIVIVTHNMQQAARISD-YTGFF 226
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.7 bits (116), Expect = 7e-08
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY 68
E+ R +D A GGQ +R+ IA + P+++++DEP S LDPV N+
Sbjct: 138 ELGDRLKDSAFE------LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL 191
Query: 69 LNRLSVQGQTIIITTHYIEEARQ 91
+ L TII+ TH +++A++
Sbjct: 192 IQELKKNF-TIIVVTHSMKQAKK 213
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 48.3 bits (116), Expect = 8e-08
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEPTS LDP+ + L + TI+I TH +++
Sbjct: 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQ 210
Query: 89 A 89
A
Sbjct: 211 A 211
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 48.5 bits (115), Expect = 8e-08
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA TL P+++++DEPTS LDP+ + L + TIII TH +++
Sbjct: 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQ 211
Query: 89 A 89
A
Sbjct: 212 A 212
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 48.2 bits (115), Expect = 9e-08
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEP S LDP+ ++ L TIII TH +++
Sbjct: 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQ 210
Query: 89 ARQANTVFGGFFAPKL 104
A + + V F+ KL
Sbjct: 211 AARVSDVTAFFYMGKL 226
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 48.3 bits (115), Expect = 1e-07
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYIE 87
GG+ +RV+IA L+++P LV+ DEPT LD A+ ++ L L+ QG ++ TH ++
Sbjct: 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ 207
Query: 88 EARQAN 93
A++ +
Sbjct: 208 LAKRMS 213
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 48.1 bits (114), Expect = 1e-07
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 5 LRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANI 64
L+ A I T+D R GGQ +R+ IA L P +V+LDEPTS LDP+ ++
Sbjct: 128 LKQAAIWKETKDNLDRN--AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 65 FWRYLNRLSVQGQTIIITTHYIEEA 89
L L Q T I+ TH +++A
Sbjct: 186 IEETLMELKHQ-YTFIMVTHNLQQA 209
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 47.9 bits (114), Expect = 1e-07
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA TL +P ++++DEP S LDP+ + L + T+II TH +++
Sbjct: 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKE-YTVIIVTHNMQQ 210
Query: 89 ARQANTVFGGFFAPKL 104
A + + G + KL
Sbjct: 211 AARVSDYTGFMYLGKL 226
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 46.6 bits (111), Expect = 2e-07
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 29 GGQVRRVSIAVTL----LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ ++A+ L L L ILDE GLDP + V+G +I+ TH
Sbjct: 80 GGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139
Query: 85 YIEEARQANTVFG 97
E A A+ +
Sbjct: 140 LPELAELADKLIH 152
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 47.5 bits (113), Expect = 2e-07
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + P ++++DEP S LDPV + + L + T++I TH +++
Sbjct: 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL-AEEYTVVIVTHNMQQ 241
Query: 89 A 89
A
Sbjct: 242 A 242
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 47.3 bits (113), Expect = 2e-07
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 13/51 (25%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI 79
GGQ +R++IA L+ P L++LDEPTS LD SVQ Q +
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALD-------------RSVQAQVL 466
Score = 40.0 bits (94), Expect = 9e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RV IA+ L + P L+I DEPT+ LD
Sbjct: 160 GGQRQRVMIAMALANEPDLLIADEPTTALD 189
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 47.0 bits (112), Expect = 2e-07
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTI 79
K LP GGQ +RV++A L+ +++LDEP S LDP L +++L + T+
Sbjct: 124 KRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183
Query: 80 IITTHYIEEARQ 91
++ TH+ E+A +
Sbjct: 184 LMVTHHPEDAAR 195
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 47.1 bits (112), Expect = 2e-07
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIIT 82
P G+ ++V IA+ L + P L+I DEPT+ ++P +R L+RL+ TI++
Sbjct: 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLI 215
Query: 83 THYIE 87
+H ++
Sbjct: 216 SHDLQ 220
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 47.3 bits (112), Expect = 3e-07
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA T+ P ++++DEPTS LDP+ + L + TI+I TH +++
Sbjct: 150 GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK-KEYTIVIVTHNMQQ 208
Query: 89 ARQANTVFGGFFAPKLHLSLNESELL 114
A + + F L + N++E +
Sbjct: 209 ASRVSDYTAFFLMGDL-IEFNKTEKI 233
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 46.8 bits (112), Expect = 3e-07
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 30 GQVRRVSIAVTLLHSPSLV-ILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
GQ RRV++A LL S + ILDEPT+ LD + A + +L QG +I TH
Sbjct: 131 GQKRRVALA-RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA----QGGIVIAATH 185
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 46.8 bits (111), Expect = 3e-07
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L +P ++++DEPTS LDPV + +L + TI+I TH +++
Sbjct: 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQQ 216
Query: 89 A 89
A
Sbjct: 217 A 217
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 46.9 bits (111), Expect = 3e-07
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY 68
+++ D+ R P GGQ RRV++A + + ++LDEPT GLDP F
Sbjct: 135 KLVQLPEDYVKRS--PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL 192
Query: 69 LNRLSV-QGQTIIITTHYIEE 88
RL+ + II+ TH +++
Sbjct: 193 FERLNKEYKKRIIMVTHNMDQ 213
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 47.1 bits (112), Expect = 3e-07
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 6 RPAEILT--RTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
R E+L ++FA RK P+ GGQ +RV++A +L P L++LDEP LD L +
Sbjct: 129 RVNEMLGLVHMQEFAKRK--PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186
Query: 64 -IFWRYLNRLSVQGQTIIITTHYIEEA 89
+ ++ L G T ++ TH EEA
Sbjct: 187 RMQLEVVDILERVGVTCVMVTHDQEEA 213
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 46.8 bits (112), Expect = 3e-07
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RV+IA +L +P +++LDE TS LD L +S +G+T I+ H
Sbjct: 140 GGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-KGRTTIVIAH 194
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 46.7 bits (111), Expect = 3e-07
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + P ++++DEP S LDP+ ++ L Q TIII TH +++
Sbjct: 154 GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212
Query: 89 ARQANTVFGGFFAPKL 104
A + + FF +L
Sbjct: 213 AARVSD-MTAFFNVEL 227
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 46.9 bits (112), Expect = 4e-07
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYLNRLSVQGQTIIITTH 84
GG RRV++A LL P L++LDEPT+ LD L +I W YL R G T+I+ +H
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLD--LESIEWLEDYLKRY--PG-TVIVVSH 208
Score = 38.0 bits (89), Expect = 4e-04
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 2 SLLLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
+ + GG+ R+ +A LL P+L++LDEPT+ LD
Sbjct: 425 RFGFTGEDQEKPVGVLS----------GGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 46.8 bits (111), Expect = 4e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEPTS LDP+ + L + +III TH +++
Sbjct: 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-KDYSIIIVTHNMQQ 228
Query: 89 A 89
A
Sbjct: 229 A 229
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 46.7 bits (110), Expect = 4e-07
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 30 GQVRRVSIAVTLL---HSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
G R +++ + LL SL+++DEP +GL P L L LS +G +I TTH
Sbjct: 193 GTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTH 250
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 46.6 bits (111), Expect = 4e-07
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + P +++LDEPTS LDP+ + L TI+I TH +++
Sbjct: 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQ 229
Query: 89 A 89
A
Sbjct: 230 A 230
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 45.9 bits (110), Expect = 4e-07
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQ-GQTIIIT 82
GG+ +RV +A L P +++LDEPTS LD +L L RL+ + G+T+++
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-----ELLRRLARERGKTVVMV 154
Query: 83 THYIEEA 89
H + A
Sbjct: 155 LHDLNLA 161
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 46.4 bits (110), Expect = 4e-07
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R E++ LR + GG+ RRV IA L +P ++LDEP +G+DP+
Sbjct: 117 RANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176
Query: 66 WRYLNRLSVQGQTIIITTHYIEE 88
R + L G ++IT H + E
Sbjct: 177 KRIIEHLRDSGLGVLITDHNVRE 199
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 46.5 bits (110), Expect = 5e-07
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA TL P++++LDEP S LDP+ + L + +III TH +++
Sbjct: 167 GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-EEYSIIIVTHNMQQ 225
Query: 89 A 89
A
Sbjct: 226 A 226
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 46.7 bits (111), Expect = 5e-07
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ +P ++I DE TS LD + R + + +G+T+II H +
Sbjct: 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST 654
Query: 89 ARQANTVF 96
R + +
Sbjct: 655 VRACDRII 662
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 46.0 bits (109), Expect = 5e-07
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIII 81
LP GGQ +RV++A L+ +++LDEP S LDP+L + +L + Q T+++
Sbjct: 125 LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184
Query: 82 TTHYIEEAR 90
TH++ +AR
Sbjct: 185 VTHHLSDAR 193
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 46.7 bits (112), Expect = 5e-07
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 11/61 (18%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITT 83
GG+ RR+ IA LLH L++LDEPT GLD +L + Q +T+++ T
Sbjct: 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLA------EHAQNKTVLMIT 531
Query: 84 H 84
H
Sbjct: 532 H 532
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 46.1 bits (110), Expect = 5e-07
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 11 LTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLN 70
L + +A RK P+ GGQ +RV+IA L++ P +++LDEP LD L L
Sbjct: 117 LVQLEGYANRK--PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELK 174
Query: 71 RLSVQ-GQTIIITTHYIEEA 89
RL + G T + TH EEA
Sbjct: 175 RLQKELGITFVFVTHDQEEA 194
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 46.1 bits (110), Expect = 5e-07
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +RV +A L P L+++DEP LDP+ + RL + G+TI+ TH I+
Sbjct: 138 GGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID 197
Query: 88 EA 89
EA
Sbjct: 198 EA 199
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 45.1 bits (108), Expect = 6e-07
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYLNRLSVQGQTIIITTH 84
GG+ R+++A LL +P+L++LDEPT+ LD L +I L T+I+ +H
Sbjct: 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLD--LESIEALEEALKEYP---GTVILVSH 125
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 46.2 bits (109), Expect = 6e-07
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA T+ P ++++DEP S LDP+ + L + TIII TH +++
Sbjct: 151 GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK-EKYTIIIVTHNMQQ 209
Query: 89 ARQANTVFGGFF 100
A + + + FF
Sbjct: 210 AARVSD-YTAFF 220
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 46.1 bits (110), Expect = 6e-07
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +RV+IA L ++P +++ DE TS LDP L ++ + G TI++ TH +E
Sbjct: 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME 203
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 46.2 bits (109), Expect = 6e-07
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
GQ +RV+IA L+ ++LDEPT+GLDP + R+ QG +II++H I+
Sbjct: 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID 197
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 46.0 bits (110), Expect = 7e-07
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL +P +++LDE TS LD + L+R G+T I+ H +
Sbjct: 142 GGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK-GRTTIVIAHRLST 200
Query: 89 ARQANTVF 96
R A+ +
Sbjct: 201 IRNADLIA 208
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 46.3 bits (110), Expect = 7e-07
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL +P ++ILDE TS LD + L +L +G+T +I H +
Sbjct: 468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST 526
Query: 89 ARQANTV 95
+ A+ +
Sbjct: 527 IKNADRI 533
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 45.9 bits (109), Expect = 7e-07
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 16 DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ 75
+FA RK P+ GGQ +RV++A L+ P +++LDEP S LD L + L + Q
Sbjct: 92 EFADRK--PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149
Query: 76 -GQTIIITTHYIEEA 89
G T + TH EEA
Sbjct: 150 LGITFVFVTHDQEEA 164
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 45.7 bits (109), Expect = 9e-07
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 13/49 (26%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77
GGQ +R+ IA L +P L++ DEP S LD +SVQ Q
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALD-------------VSVQAQ 147
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 45.7 bits (109), Expect = 9e-07
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 8 AEILTRTRD---------FALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
AEI R + FA RK P+ GGQ +RV+IA +++ P +++LDE S LD
Sbjct: 119 AEITPRVMEALRMVQLEEFAQRK--PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 59 PVLANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
L L L + G T + TH EEA
Sbjct: 177 YKLRKQMQNELKALQRKLGITFVFVTHDQEEA 208
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 45.3 bits (108), Expect = 1e-06
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 9/68 (13%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITT 83
GGQ +RV IA L ++P +++ DE TS LDP +LA + R +NR G TI++ T
Sbjct: 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL--RDINR--ELGLTIVLIT 198
Query: 84 HYIEEARQ 91
H +E ++
Sbjct: 199 HEMEVVKR 206
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 45.6 bits (108), Expect = 1e-06
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TI 79
+P GGQ +RV+IA L P +++ DE TS LDP L + RL+ + T+
Sbjct: 141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTM 200
Query: 80 IITTHYIEEARQ 91
++ TH + AR+
Sbjct: 201 LLVTHEMGFARE 212
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 45.4 bits (108), Expect = 1e-06
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT-IIITTHYIEE 88
GQ R I L+ P+L+ILDEP GLDP+ + R+++ L +G+T ++ +H+ E+
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED 464
Query: 89 ARQANT 94
A T
Sbjct: 465 APACIT 470
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81
G+ R+ + L+ P L+ILDEP GLD L L G T+++
Sbjct: 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.4 bits (107), Expect = 1e-06
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEP S LDPV + L Q TI I TH +++
Sbjct: 150 GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQ 208
Query: 89 ARQAN 93
A +A+
Sbjct: 209 AARAS 213
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 45.3 bits (108), Expect = 1e-06
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R+ IA L+ +PS++ILDE TS LDP I L R +G T II H
Sbjct: 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAH 670
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 45.1 bits (107), Expect = 1e-06
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTH 84
GG ++RV IA+ LL P +I DEPT+ LD V + L L + G I++ TH
Sbjct: 128 GGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 44.8 bits (106), Expect = 2e-06
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 1 MSLLLRPAEILTRTRDFALRKL----LPNWTVG----GQVRRVSIAVTLLHSPSLVILDE 52
+ L RP ALR++ L + VG GQ +RV +A L PS+++LDE
Sbjct: 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE 139
Query: 53 PTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
P +GLD + L+ G I++TTH + +A
Sbjct: 140 PFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQA 176
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 44.5 bits (106), Expect = 2e-06
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL P ++ILDE TS LD + L RL + +T + H +
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLST 199
Query: 89 ARQANTVF 96
A+ +
Sbjct: 200 IENADRIV 207
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 44.8 bits (106), Expect = 2e-06
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA T+ P ++++DEP S LDP+ ++ L + TI+I TH +++
Sbjct: 157 GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-KNFTIVIVTHNMQQ 215
Query: 89 A 89
A
Sbjct: 216 A 216
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 44.3 bits (104), Expect = 2e-06
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ + + +A TL +P +++LDEPTS LDP ++ L+ + T+II TH + +
Sbjct: 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQ 224
Query: 89 ARQANTVFGGFFAPKL 104
A + + FF +L
Sbjct: 225 AARISDRAALFFDGRL 240
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 44.3 bits (105), Expect = 3e-06
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD-PVLANIFWRYLNRLSVQGQT- 78
K+ P+ GG +RV IA+ LL P L+I DEPT+ LD V A I LN L + T
Sbjct: 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIM-TLLNELKREFNTA 214
Query: 79 IIITTH 84
II+ TH
Sbjct: 215 IIMITH 220
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 44.3 bits (105), Expect = 3e-06
Identities = 22/43 (51%), Positives = 27/43 (62%)
Query: 16 DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
D R P GGQ +R++IA L+ PSL+ILDEPTS LD
Sbjct: 415 DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
Score = 39.7 bits (93), Expect = 1e-04
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 13 RTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
R D+ P+ GG+ +RV IA+ LL P L+I DEPT+ LD
Sbjct: 149 RLTDY------PHQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 44.1 bits (104), Expect = 3e-06
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ +A TL P +++LDEPTS LDP + L TI+I TH +++
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR-GSYTIMIVTHNMQQ 243
Query: 89 A 89
A
Sbjct: 244 A 244
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 43.9 bits (103), Expect = 3e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEP S LDP+ ++ L + TI I TH +++
Sbjct: 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNMQQ 211
Query: 89 ARQANTVFGGFFA 101
A + + F FF+
Sbjct: 212 ATRVSD-FTAFFS 223
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 43.8 bits (103), Expect = 4e-06
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P +++ DEPTS LDP+ ++ L TI+I TH +++
Sbjct: 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK-NKVTILIVTHNMQQ 222
Query: 89 A 89
A
Sbjct: 223 A 223
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 43.9 bits (104), Expect = 4e-06
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P GGQ +RV++A L SP L++LDEP S LD + + +L + G T I+
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191
Query: 83 THYIEEA 89
TH EEA
Sbjct: 192 THDQEEA 198
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 44.1 bits (104), Expect = 4e-06
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEP S LDP+ + + L+ + T+++ TH +++
Sbjct: 203 GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-EEYTVVVVTHNMQQ 261
Query: 89 A 89
A
Sbjct: 262 A 262
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 43.9 bits (104), Expect = 4e-06
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 5 LRPAEILTRTRDFALRKLL---------PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTS 55
RP+E R R L +L+ P GGQ +RV++A L P +++LDEP
Sbjct: 107 ERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166
Query: 56 GLDPVLANIFWRYLNRL-SVQGQTIIITTHYIEEAR 90
LD + R+L +L G T + TH EEA
Sbjct: 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 43.9 bits (103), Expect = 4e-06
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
N GGQ +R+ IA + P ++++DEPTS LDP+ + L + +III TH
Sbjct: 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KKYSIIIVTH 282
Query: 85 YIEEARQAN--TVF 96
+ +A++ + TVF
Sbjct: 283 SMAQAQRISDETVF 296
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 43.5 bits (103), Expect = 4e-06
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + P +++LDEP S LDP+ + L Q T++I TH +++
Sbjct: 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQ 217
Query: 89 A 89
A
Sbjct: 218 A 218
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 43.8 bits (103), Expect = 4e-06
Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 5 LRPAEILTRTRDFALRKLLPNWTV--GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLA 62
LR A I +D KL T GGQ +R+ IA + P ++++DEP S LDP+
Sbjct: 142 LRRAAIWEEVKD----KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197
Query: 63 NIFWRYLNRLSVQGQ---TIIITTHYIEEA-RQANTVFGGFF 100
R + L ++ + TII+ TH +++A R A+ + FF
Sbjct: 198 ----RQVEELCLELKEQYTIIMVTHNMQQASRVAD--WTAFF 233
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 43.5 bits (103), Expect = 4e-06
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTHYIE 87
GG+ +RV+IA L+ +P +++LDEP S LD L ++ G T++ TH E
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 88 EAR 90
EA
Sbjct: 192 EAW 194
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 43.9 bits (104), Expect = 5e-06
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ P ++ILDE TS LD + +R +T+++ H +
Sbjct: 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR---ASRTVLLIAHRLST 676
Query: 89 ARQANTVF 96
+A+ +
Sbjct: 677 VERADQIL 684
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 43.7 bits (103), Expect = 5e-06
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
P+ GG +RV +A L P ++++DE S LDP++ + L +L +TI+
Sbjct: 127 PDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI 186
Query: 83 THYIEEA 89
TH ++EA
Sbjct: 187 THDLDEA 193
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 43.6 bits (103), Expect = 5e-06
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 5 LRPAEI-LTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD-PVLA 62
L EI L R D LP GG +R+ IA L+ P LV +DEPT GLD V A
Sbjct: 135 LEEVEIDLDRIDD------LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 63 NIFWRYLNRLSVQGQTIIITTHYIEEAR 90
+ + G ++I TH + AR
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVAR 216
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.5 bits (102), Expect = 5e-06
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ---TIIITTHY 85
GGQ +R+ IA + P +++LDEP S LDP+ R + L V+ + TI + TH
Sbjct: 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIAT----RRVEELMVELKKDYTIALVTHN 207
Query: 86 IEEARQANTVFGGFFA 101
+++A + FF+
Sbjct: 208 MQQAIRVADT-TAFFS 222
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 43.0 bits (102), Expect = 5e-06
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
GQ RRV++A L L ILDEP + LD +L + + QG +++TTH
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA----QGGIVLLTTH 188
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 43.0 bits (102), Expect = 6e-06
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 18/97 (18%)
Query: 6 RPAEILTRTRDFA----LRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
EI R R+ A + LL P GGQ +RV++ ++ P + ++DEP S LD
Sbjct: 103 PKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
Query: 59 PVLANIFWRY-----LNRLSVQ-GQTIIITTHYIEEA 89
L R L RL + G T I TH EA
Sbjct: 163 AKL-----RVQMRAELKRLQQRLGTTTIYVTHDQVEA 194
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 43.2 bits (102), Expect = 7e-06
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIII 81
LP GG+ +RV+I LL SP L+++DEP + LD YL RL + G I+
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187
Query: 82 TTHYIEE-ARQANTV 95
+H ++E R A+ V
Sbjct: 188 VSHSLQEVLRLADRV 202
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 42.8 bits (102), Expect = 7e-06
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN-IFWRYLNRLSVQGQTIIITTHYIE 87
GGQ +R+S+A + + +LD+P S +D + IF + L + +T I+ TH ++
Sbjct: 130 GGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ 189
Query: 88 EARQANTV 95
A+ +
Sbjct: 190 LLPHADQI 197
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.2 bits (102), Expect = 7e-06
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + SP ++++DEP S LDP+ ++ L TI+I TH +++
Sbjct: 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN-YTIVIVTHSMQQ 224
Query: 89 A 89
A
Sbjct: 225 A 225
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 43.1 bits (101), Expect = 7e-06
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIITTHYIE 87
GGQ +R+ IA L P ++++DEP GLDP+ + + L ++ + T++I +H +
Sbjct: 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH 212
Query: 88 EARQANTVFGGFF 100
+ + + F FF
Sbjct: 213 QVSRLSD-FTAFF 224
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 42.9 bits (101), Expect = 7e-06
Identities = 33/88 (37%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 5 LRPAEI-LTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
L EI TR D LP GG +R+ IA L+ P LV +DEPT GLD +
Sbjct: 132 LEEVEIDPTRIDD------LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 185
Query: 64 IFWRYLNRLSVQ-GQTIIITTHYIEEAR 90
L L G +II TH + AR
Sbjct: 186 RLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 43.0 bits (102), Expect = 8e-06
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 15/75 (20%)
Query: 18 ALRKLLPNWTV------GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYL 69
ALR P W GG+ RRV++ LL P +++LDEPT+ LD ++ W ++L
Sbjct: 149 ALR--CPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA--ESVAWLEQHL 204
Query: 70 NRLSVQGQTIIITTH 84
G T++ TH
Sbjct: 205 QEY--PG-TVVAVTH 216
Score = 31.8 bits (73), Expect = 0.072
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+ RV +A TL ++++LDEPT+ LD
Sbjct: 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 43.1 bits (101), Expect = 8e-06
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYIE 87
GGQ +RV+IA L+ +++ DEP + LDP A I L ++ G T+++T H ++
Sbjct: 155 GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD 214
Query: 88 EA----------RQANTVFGG 98
A RQ + + G
Sbjct: 215 YALRYCERIVALRQGHVFYDG 235
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 42.6 bits (101), Expect = 9e-06
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +R I L P L ILDE SGLD I +NRL ++ +I THY
Sbjct: 147 GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.7 bits (100), Expect = 9e-06
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA L P ++++DEPTS LDP + L + TIII TH + +
Sbjct: 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-KVTTIIIVTHNMHQ 209
Query: 89 A 89
A
Sbjct: 210 A 210
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 42.5 bits (101), Expect = 1e-05
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV-LANIFWRYLNRLSVQGQTIIITTHYIE 87
GG+ RRV IA L +P ++LDEP +G+DP+ + +I + + L +G ++IT H +
Sbjct: 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI-QKIIKILKDRGIGVLITDHNVR 194
Query: 88 E 88
E
Sbjct: 195 E 195
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 42.6 bits (101), Expect = 1e-05
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYLNRLSVQGQTIIITTHYIE 87
GG+ RRV IA L +P ++LDEP +G+DP + +I R + L +G ++IT H +
Sbjct: 142 GGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI-QRIIKHLKDRGIGVLITDHNVR 200
Query: 88 E 88
E
Sbjct: 201 E 201
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 42.8 bits (101), Expect = 1e-05
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT 78
P GGQ++RV +A L P L+ILDE S LD VL R L +L Q T
Sbjct: 148 RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 42.4 bits (100), Expect = 1e-05
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 16 DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ 75
DF R+ P GGQ +RV+IA + P ++ILDE TS LDP + + +
Sbjct: 132 DFKERE--PARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189
Query: 76 GQ-TIIITTHYIEEARQANTV 95
Q T+I TH ++E ++ V
Sbjct: 190 YQMTVISITHDLDEVALSDRV 210
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 42.3 bits (100), Expect = 1e-05
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 19 LRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT 78
L P GG+ +RV+I LL +P L+++DEP + LD YL RL +
Sbjct: 121 LLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180
Query: 79 -IIITTHYIEE-ARQANTV 95
I+ +H ++E R A+ V
Sbjct: 181 PILYVSHSLDEVLRLADRV 199
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 42.4 bits (99), Expect = 1e-05
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 16 DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ 75
DF R+ P GGQ +RV++A + P ++ILDE TS LDP R ++ + +
Sbjct: 132 DFKTRE--PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189
Query: 76 GQ-TIIITTHYIEEARQANTVF 96
Q T++ TH ++EA ++ +
Sbjct: 190 YQLTVLSITHDLDEAASSDRIL 211
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 42.0 bits (99), Expect = 2e-05
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 19/71 (26%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ----------GQT 78
GGQ +RV++A L+H P L++LDEP LD L R+ +Q G T
Sbjct: 136 GGQKQRVALARALIHRPGLLLLDEPLGALDA---------LTRIEMQDLIESLWQQHGFT 186
Query: 79 IIITTHYIEEA 89
+++ TH + EA
Sbjct: 187 VLLVTHDVSEA 197
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 41.7 bits (99), Expect = 2e-05
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYLNRLSVQ-GQTIIITTHYI 86
GGQ ++++IA L+ P L++LDEPT G+ P ++ +I R + RL + G I++ Y+
Sbjct: 134 GGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIRRLRAEGGMAILLVEQYL 192
Query: 87 EEARQA 92
+ AR+
Sbjct: 193 DFAREL 198
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 42.0 bits (99), Expect = 2e-05
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +R+++A LL +++LDEPT LD A+ L G+T+++ TH
Sbjct: 474 GGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAAL-SGRTVVLITH 528
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 41.9 bits (99), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R+++A L P LV+LDEP S LD + L +G T+++ TH
Sbjct: 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 41.5 bits (98), Expect = 2e-05
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 13 RTRDFALRKLLPNWTV----GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY 68
T DFALR N V GG+ +RVSIA L+ S++ D T GLD A +
Sbjct: 102 ETLDFALR-CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC 160
Query: 69 LNRLS-VQGQTIIIT 82
+ ++ V T ++
Sbjct: 161 IRTMADVLKTTTFVS 175
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 41.7 bits (98), Expect = 2e-05
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQT 78
LP GGQ++R++IA L P L++LDE S LD VL + L +L T
Sbjct: 147 LPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 41.6 bits (98), Expect = 2e-05
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHY 85
GG+ +R I L L ILDE SGLD I +N+L +II+ THY
Sbjct: 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 41.6 bits (98), Expect = 2e-05
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+ IA + P ++++DEP S LDP+ +N L Q TI+I TH +++
Sbjct: 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-QDYTIVIVTHNMQQ 209
Query: 89 A 89
A
Sbjct: 210 A 210
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 41.7 bits (98), Expect = 2e-05
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 1 MSLLLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV 60
++LL P ++LTR+ + GG+ +R I + P L ILDE SGLD
Sbjct: 128 IALLKMPEDLLTRSVNVGFS--------GGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 61 LANIFWRYLNRLSVQGQTIIITTHY 85
I +N L ++ II THY
Sbjct: 180 ALKIVADGVNSLRDGKRSFIIVTHY 204
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 41.0 bits (97), Expect = 2e-05
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +R++ A LLH P V LDE TS LD + R L G T+I H
Sbjct: 94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESED---RLYQLLKELGITVISVGH 146
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 41.8 bits (98), Expect = 2e-05
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +RV+IA L +P +++ DE TS LDP L ++ + G TI++ TH ++
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 41.2 bits (97), Expect = 2e-05
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 29 GGQVRRVSIAVTLLHSP--SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86
GG+++RV +A L P +L ILDEP++GL N + L G T+I+ H +
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149
Query: 87 EEARQANTV 95
+ A+ +
Sbjct: 150 DVLSSADWI 158
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 41.3 bits (97), Expect = 2e-05
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GQ RRV++A LL L ILDEPT+ LD F + +G +++TTH
Sbjct: 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 41.4 bits (97), Expect = 2e-05
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RV IA +++ P++++ DEPT LD L+ R + G T+++ TH
Sbjct: 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 41.7 bits (98), Expect = 3e-05
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GG+ +RV +A L P L + DEPT LDP A + L G ++++T+H+ E
Sbjct: 171 GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230
Score = 41.3 bits (97), Expect = 3e-05
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN-IFWRYLNRLSVQGQTIII 81
P+ G+ RV++A L+ P +VILDEPT +DP+ + L QT II
Sbjct: 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483
Query: 82 TTH 84
+H
Sbjct: 484 VSH 486
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 41.5 bits (98), Expect = 3e-05
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ +R++ A LLH P V LDE TS LD + ++ L + T+I H
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGH---- 572
Query: 89 ARQANTVFGGFFAPKLHL 106
F + +L L
Sbjct: 573 ----RPTLWNFHSRQLEL 586
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 41.0 bits (96), Expect = 3e-05
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 9 EILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRY 68
E+ R D+ P+ GGQ +R+ IA L P ++++DEPT+ +DPV
Sbjct: 138 EVKDRLNDY------PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL 191
Query: 69 LNRLSVQGQTIIITTH 84
L L + TI++ TH
Sbjct: 192 LFELKKE-YTIVLVTH 206
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 41.3 bits (97), Expect = 4e-05
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+++A LL ++ILDE TS LD + N L++Q +TII H +
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN--NLLNLQDKTIIFVAHRLSV 671
Query: 89 ARQANTV 95
A+Q++ +
Sbjct: 672 AKQSDKI 678
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 40.6 bits (95), Expect = 5e-05
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQ-GQTIIITTH 84
G+ ++V IA+ L + P L+I DEPT+ ++P A IF R L RL+ TI++ +H
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISH 217
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 40.7 bits (96), Expect = 5e-05
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIII 81
P+ GG +RV +A L P ++++DE S LDP++ L RL + +TI+
Sbjct: 157 YPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVF 216
Query: 82 TTHYIEEA 89
TH ++EA
Sbjct: 217 ITHDLDEA 224
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 39.6 bits (93), Expect = 5e-05
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTS 55
GGQ +RV+IA LL P L++LDEPT+
Sbjct: 93 GGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 40.7 bits (96), Expect = 5e-05
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ 77
GGQ +R++IA L+ P +V+ DEP S LD +SVQ Q
Sbjct: 157 GGQRQRIAIARALMLDPDVVVADEPVSALD-------------VSVQAQ 192
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 40.6 bits (96), Expect = 5e-05
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84
GQ RR+ IA L P L++LDEP +GL+P + L + G TI++ H
Sbjct: 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEH 208
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 40.1 bits (95), Expect = 6e-05
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GG+ + ++IA L+ P L++LDEP+ GL P + + + L + G TI++
Sbjct: 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198
Query: 88 EARQ 91
A +
Sbjct: 199 FALE 202
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 40.4 bits (95), Expect = 6e-05
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RV+IA T+L +P ++ILDE TS LD L +S G+T ++ H
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAH 456
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 40.4 bits (95), Expect = 7e-05
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 35 VSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91
V I L+ ++ILDEPT+ L P + + L QG I+ +H + E RQ
Sbjct: 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQ 205
Score = 38.1 bits (89), Expect = 4e-04
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG ++V IA L SP L+I+DEPT G+D N ++ + ++ Q ++ + +EE
Sbjct: 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE 465
Query: 89 ARQ 91
Q
Sbjct: 466 IEQ 468
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 40.4 bits (95), Expect = 7e-05
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
Query: 8 AEILTRTRDFALRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANI 64
AE+L L LL P GGQ +RV+I TL+ PS+ +LDEP S LD L
Sbjct: 118 AEVLQ------LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171
Query: 65 FWRYLNRLSVQ-GQTIIITTHYIEEA 89
++RL + G+T+I TH EA
Sbjct: 172 MRIEISRLHKRLGRTMIYVTHDQVEA 197
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 40.3 bits (95), Expect = 7e-05
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 19/71 (26%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ----------GQT 78
GGQ +RV++A L+ P +++LDEP S LD L R ++ G T
Sbjct: 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKL---------REQMRKELKELQRELGIT 189
Query: 79 IIITTHYIEEA 89
+ TH EEA
Sbjct: 190 FVYVTHDQEEA 200
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 39.8 bits (93), Expect = 8e-05
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYL-NRLSVQGQTIIIT 82
P GGQ RV++ LL P ++LDEP S LD L + F +++ + + G +
Sbjct: 132 PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQV 191
Query: 83 THYIEEA 89
TH +++
Sbjct: 192 THDLQDV 198
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 40.2 bits (94), Expect = 8e-05
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 29 GGQVRRVSIAVTLLH-------SPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81
GG+ +RV +A +L + L++LDEP + LD + R L+ L QG I++
Sbjct: 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVM 187
Query: 82 TTHYIEEA-RQANTVF 96
++H + R A+ +
Sbjct: 188 SSHDLNHTLRHAHRAW 203
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 40.1 bits (94), Expect = 8e-05
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 5 LRPAEILTRTRDFALR-KLLPNWT-------VGGQVRRVSIAVTLLHSPSLVILDEPTSG 56
L E+ R + L+ LLPN GGQ +R+ IA L+ P L+I DEP S
Sbjct: 132 LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191
Query: 57 LD 58
LD
Sbjct: 192 LD 193
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 39.9 bits (94), Expect = 8e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
G+ + ++IA +L P ++ILDE TS +D + L +L +G+T II H
Sbjct: 143 GERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAH 196
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 40.3 bits (94), Expect = 9e-05
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
RV++A L + SL+I+DEPT+ LD L +I L S Q I+I+ H
Sbjct: 815 RVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHH 869
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 39.7 bits (93), Expect = 9e-05
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTI 79
KL+P+ GG RR ++A + P L++ DEP G DP+ + + ++ L S G T
Sbjct: 138 KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC 197
Query: 80 IITTHYIEE 88
++ +H + E
Sbjct: 198 VVVSHDVPE 206
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 40.1 bits (95), Expect = 9e-05
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 17/76 (22%)
Query: 18 ALRKLLPNW----TV--GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLA-NIFW--RY 68
ALR P W T GG+ RRV++ LL P +++LDEPT+ LD A ++ W ++
Sbjct: 151 ALR--CPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD---AESVAWLEQF 205
Query: 69 LNRLSVQGQTIIITTH 84
L+ G T++ TH
Sbjct: 206 LHDYP--G-TVVAVTH 218
Score = 28.9 bits (66), Expect = 0.60
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+ R+ +A TL ++++LDEPT+ LD
Sbjct: 448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 39.5 bits (93), Expect = 1e-04
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD-PVLANIFWRYLNRL----SVQGQTIIITT 83
GG +R+ IA L+ P LV +DEPT GLD V A R L+ L G ++I T
Sbjct: 154 GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQA----RLLDLLRGLVRELGLAVVIVT 209
Query: 84 HYIEEAR 90
H + AR
Sbjct: 210 HDLAVAR 216
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 39.7 bits (93), Expect = 1e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+ +RV +A LL+ P L++LDEPT G+D
Sbjct: 123 GGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 39.6 bits (93), Expect = 1e-04
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R +A+ L +V+LDEPT+ LD R + L+ QG+T++ H + +
Sbjct: 141 GGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ 200
Query: 89 A 89
A
Sbjct: 201 A 201
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 39.7 bits (93), Expect = 1e-04
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 19/76 (25%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-------- 75
PN GG +RV +A L + P ++++DE S LDP L R +Q
Sbjct: 162 PNELSGGMQQRVGLARALANDPDILLMDEAFSALDP---------LIRTEMQDELLELQA 212
Query: 76 --GQTIIITTHYIEEA 89
+TI+ TH ++EA
Sbjct: 213 KLKKTIVFITHDLDEA 228
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 39.4 bits (93), Expect = 1e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 15/71 (21%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP--------VLANIFWRYLNRLSVQGQTII 80
GGQ +RV+IA L +P +++ DE TS LDP +L +I NR G TI+
Sbjct: 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI-----NRE--LGLTIV 195
Query: 81 ITTHYIEEARQ 91
+ TH ++ ++
Sbjct: 196 LITHEMDVVKR 206
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 39.0 bits (91), Expect = 2e-04
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 29 GGQVRRVSIAVTLLHS---PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+++R+ +A LL P+L +LDEPT+GL L L+ QG T++I H
Sbjct: 812 GGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
Score = 32.1 bits (73), Expect = 0.052
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 16 DFALRKLLPNWTV----GGQVRRVSIAVTLLHSPSLV--ILDEPTSGLDPVLANIFWRYL 69
D L L P + GG+ R ++A L + ILDEP+ GL P + +
Sbjct: 462 DLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVI 521
Query: 70 NRLSVQGQTIIITTH 84
+L QG T+++ H
Sbjct: 522 KKLRDQGNTVLLVEH 536
Score = 31.7 bits (72), Expect = 0.089
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 45 PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQAN 93
P+L +LDE + LD + L L G ++I H +QA+
Sbjct: 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQAD 1769
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 38.9 bits (91), Expect = 2e-04
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTHYIE 87
GGQ +RV IA L +P L++LDEP LD L +L G+ +++ TH IE
Sbjct: 131 GGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190
Query: 88 EA 89
EA
Sbjct: 191 EA 192
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 38.5 bits (90), Expect = 2e-04
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
GQ RR+++A L L ILDEPT+ LD +LA + +L R G +++TTH
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR----GGIVLLTTH 185
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 38.6 bits (90), Expect = 2e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RV+IA L+ +P ++ILDE TS LD
Sbjct: 153 GGQKQRVAIARALIRNPQVLILDEATSALD 182
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 38.6 bits (90), Expect = 2e-04
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GG +RV+IA L P +++LDEP LD + N+ + T+++ TH ++
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVD 176
Query: 88 EA 89
EA
Sbjct: 177 EA 178
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 38.6 bits (91), Expect = 3e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA L L +LDEP++ LD
Sbjct: 456 GGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 34.4 bits (80), Expect = 0.009
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA LL DEPTS LD
Sbjct: 215 GGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 38.9 bits (90), Expect = 3e-04
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIIT 82
P+ GG +RV +A L +P ++++DE S LDP++ L +L + Q TI+
Sbjct: 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221
Query: 83 THYIEEA 89
+H ++EA
Sbjct: 222 SHDLDEA 228
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 38.5 bits (89), Expect = 3e-04
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L P ++++DEPTS +D V + + + L + +I++ + +
Sbjct: 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQV 215
Query: 89 ARQANTV 95
AR A+ V
Sbjct: 216 ARVADYV 222
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.4 bits (89), Expect = 3e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV-LANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ +R+ IA L P +++ DEPT+ LDP A I +L + TI++ TH+ +
Sbjct: 149 GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL--KKDMTIVLVTHFPQ 206
Query: 88 EA 89
+A
Sbjct: 207 QA 208
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 38.2 bits (90), Expect = 3e-04
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLD----PVLANIFWRYLNRLSVQGQTIIITTH 84
GQ RRV++A L L ILDEP + +D L + ++ + G +I+TTH
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQ----GGMVILTTH 187
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 38.4 bits (90), Expect = 3e-04
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ +R++IA LL P ++ILDE TS LD L+ L +G+T I H +
Sbjct: 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLST 532
Query: 89 ARQANTVF 96
R A+ +
Sbjct: 533 VRNADRIL 540
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 38.3 bits (89), Expect = 3e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ + ++I L+ P L++LDEP+ GL P++ + + +L QG TI + +
Sbjct: 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVE---QN 196
Query: 89 ARQA 92
A QA
Sbjct: 197 ANQA 200
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 38.0 bits (89), Expect = 4e-04
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 29 GGQVRRVSIAVTLLH-SPS------LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81
GG+ +RV +A +L P L++LDEP + LD R L+ L QG +++
Sbjct: 129 GGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVM 188
Query: 82 TTH 84
++H
Sbjct: 189 SSH 191
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 38.4 bits (90), Expect = 4e-04
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R+++A L P LV+LDEP S LD + +G T+++ H
Sbjct: 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 37.6 bits (88), Expect = 4e-04
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIII 81
LP GGQ +RV++A L+ +++LDEP S LDP L ++++ + Q T+++
Sbjct: 126 LPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLM 185
Query: 82 TTHYIEEA 89
+H +E+A
Sbjct: 186 VSHSLEDA 193
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 37.9 bits (88), Expect = 5e-04
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIIT 82
PN GGQ +RV++A L P +++LDEP LD + +L +L + T +
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187
Query: 83 THYIEEA 89
TH EEA
Sbjct: 188 THDQEEA 194
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 37.7 bits (88), Expect = 5e-04
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 6 RPAEILTRTRDFALRKLL---------PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSG 56
RP E R + L KL+ P GGQ +RV++A L P +++LDEP
Sbjct: 107 RPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGA 166
Query: 57 LDPVLANIFWRYLNRLSVQ-GQTIIITTHYIEEA 89
LD + R+L RL + T + TH EEA
Sbjct: 167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA 200
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 37.6 bits (88), Expect = 5e-04
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIIT 82
T ++ ++ + SLV+LDE SG DPV LA L +G +I T
Sbjct: 91 TFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE---RGALVIAT 147
Query: 83 THYIE 87
THY E
Sbjct: 148 THYGE 152
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 37.7 bits (88), Expect = 5e-04
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81
GG ++V+IA L+ P ++ILDEPT G+D ++ +N+ +G +II+
Sbjct: 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450
Score = 32.3 bits (74), Expect = 0.044
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 20 RKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGL-DPVLANIFWRYLNRLSVQGQT 78
KL+ ++G Q + V IA L ++I+DEPT L D ++F R + L QG+
Sbjct: 136 DKLVGELSIGEQ-QMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIRELKSQGRG 193
Query: 79 IIITTHYIEEARQ---ANTVF--GGFFAPKLHLSLNESELL 114
I+ +H ++E + TVF G F A + L E L+
Sbjct: 194 IVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLI 234
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 37.4 bits (88), Expect = 5e-04
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG ++V +A L P ++ILDEPT G+D +R + L+ G+ +++ + ++E
Sbjct: 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166
Query: 89 ARQ 91
Sbjct: 167 LLG 169
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 37.5 bits (87), Expect = 5e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP 59
GG+ +R+++ L P +++LDE TS LD
Sbjct: 136 GGEKQRIALIRNLQFMPKILLLDEITSALDE 166
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 37.9 bits (88), Expect = 5e-04
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG ++ +A LL +P ++ILDEPT G+D ++ +N+L+ +G II+ + + E
Sbjct: 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE 465
Score = 32.1 bits (73), Expect = 0.047
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ + V IA L L+ILDEP+S L I + L G + +H + E
Sbjct: 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE 203
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 37.2 bits (86), Expect = 6e-04
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA LL + + + DEP++ LD
Sbjct: 74 GGELQRVAIAAALLRNATFYLFDEPSAYLD 103
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 37.5 bits (88), Expect = 6e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 11/66 (16%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD-P----VLANIFWRYLNRLSVQGQT-IIIT 82
GG+ +RV+I LL +P L+++DEP + LD P +L YL RL+ + I+
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLP-----YLERLAREINIPILYV 185
Query: 83 THYIEE 88
+H ++E
Sbjct: 186 SHSLDE 191
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 37.3 bits (87), Expect = 9e-04
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA L L +LDEP++ LD
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLD 487
Score = 33.4 bits (77), Expect = 0.018
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA LL + DEP+S LD
Sbjct: 216 GGELQRVAIAAALLRDADVYFFDEPSSYLD 245
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 36.9 bits (85), Expect = 0.001
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL--SVQGQTII 80
LP GG +R++IA + P +++LDEP S LD + + L + TI+
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 81 ITTHYIEEA 89
TH ++A
Sbjct: 194 CVTHDQDDA 202
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 37.0 bits (86), Expect = 0.001
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH---Y 85
GGQ +R++IA LL ++ILDE TS LD + L RL +QG+T ++ H
Sbjct: 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLST 530
Query: 86 IEEARQ 91
IE+A +
Sbjct: 531 IEKADR 536
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 36.9 bits (86), Expect = 0.001
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +R IA+ L V+LDEP + LD + + L RL+ + G+TI++ H I
Sbjct: 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197
Query: 88 EA 89
A
Sbjct: 198 FA 199
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 36.7 bits (85), Expect = 0.001
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 35 VSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91
+ IA TL+ ++I+DEPTS L + + +N+L +G I+ +H + E R+
Sbjct: 154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210
Score = 34.0 bits (78), Expect = 0.011
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG ++V I+ L P ++I DEPT G+D ++ + +L+ G+ I++ + + E
Sbjct: 412 GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 36.9 bits (86), Expect = 0.001
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R++IA LL ++ILDE TS LD
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 36.7 bits (85), Expect = 0.001
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GG +RV IA L P L++LDEP LD + L L + G+ +++ TH IE
Sbjct: 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194
Query: 88 EA 89
EA
Sbjct: 195 EA 196
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 36.5 bits (85), Expect = 0.001
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 29 GGQVRRVSIAVTLLH---SPSLVILDEPTSGL--DPV--LANIFWRYLNRLSVQGQTIII 81
GG+ +R+ +A L +L ILDEPT+GL D + L + L RL +G T+++
Sbjct: 832 GGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEV----LQRLVDKGNTVVV 887
Query: 82 TTH 84
H
Sbjct: 888 IEH 890
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 36.2 bits (84), Expect = 0.001
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 5 LRPAEILTRTR-DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN 63
R E+L R L L P GG+ +RV+IA + +++LDEPT+ LD
Sbjct: 127 ARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQ 186
Query: 64 IFWRYLNRLSVQGQTIIITTH 84
+ + +G +I H
Sbjct: 187 VVVELIAEAKARGAALIGIFH 207
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDP 59
GQ RR+ IA ++ P +++LDEP +GL+P
Sbjct: 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 36.4 bits (84), Expect = 0.002
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +RV +A + +++LDEP +G+D L L +G+T++++TH
Sbjct: 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 36.2 bits (84), Expect = 0.002
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 31 QVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
Q++ + IA ++ +VI+DEPTS L N + + +L +G I+ +H +EE
Sbjct: 139 QMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196
Score = 33.9 bits (78), Expect = 0.013
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANI-FWRYLNRLSVQGQTIII 81
GG ++V I LL P +++LDEPT G+D V A ++ + L+ + + III
Sbjct: 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGID-VGAKFEIYQLIAELAKKDKGIII 446
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 36.3 bits (84), Expect = 0.002
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RV +A L P L++LDEPT+ LD + L+ G T++ H
Sbjct: 140 GGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALH 195
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 36.4 bits (84), Expect = 0.002
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 9 EILTRT--RDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW 66
EIL R D L + + GQ R +A L P+++++DE + LD + A
Sbjct: 488 EILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVA 547
Query: 67 RYLNRLSVQ-GQTIIITTHYIEEARQ 91
R ++ L+ + G T+I+ TH E
Sbjct: 548 RKISELAREAGITLIVVTHRPEVGNA 573
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 36.0 bits (84), Expect = 0.002
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GQ + V IA L + ++ DEPTS L +R + L +G+ I+ +H +EE
Sbjct: 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE 202
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 36.2 bits (84), Expect = 0.002
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R++IA +L +++LDE TS LD + + L L +G+T +I H
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAH 533
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 35.7 bits (83), Expect = 0.002
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 29 GGQVRRVSIAVTLLH---SPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIII 81
GG+ +R+ +A L +L ILDEPT+GL L + L RL +G T+++
Sbjct: 172 GGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEV----LQRLVDKGNTVVV 227
Query: 82 TTH 84
H
Sbjct: 228 IEH 230
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 35.5 bits (82), Expect = 0.003
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA L + +LDEP++ LD
Sbjct: 118 GGELQRVAIAACLSKDADIYLLDEPSAYLD 147
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 35.3 bits (82), Expect = 0.003
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITTHYIEE 88
R+++A T + ++ LDEPT+ LD LA I Q I+IT EE
Sbjct: 129 RLALAETFGSNCGILALDEPTTNLDEENIEESLAEII-EERKSQKN-FQLIVITHD--EE 184
Query: 89 ARQA 92
A
Sbjct: 185 LVDA 188
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.5 bits (82), Expect = 0.003
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
P+ GG +RV IA+ + P L+I DEPT+ LD
Sbjct: 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALD 185
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 35.1 bits (81), Expect = 0.005
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 13/62 (20%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD-----PVLANIF-WRYLNRLSVQGQTIIIT 82
GGQ +R+SIA LL + ++ILD+ S +D +L N+ W +G+T+II+
Sbjct: 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-------EGRTVIIS 506
Query: 83 TH 84
H
Sbjct: 507 AH 508
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 35.2 bits (81), Expect = 0.005
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR-YLNRLSVQGQTIIITTH 84
GQ +R+++ + LL +++LDE + DP F++ L L QG+TI +H
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISH 507
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 35.3 bits (82), Expect = 0.005
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 29 GGQVRRVSIAVTLLHSPS----LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RV +A L S L ILDEPT+GL L+RL +G T+I+ H
Sbjct: 825 GGEAQRVKLA-KELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 35.1 bits (81), Expect = 0.005
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ-TIIITTHYIE 87
GGQ +RV++A L P +++LDEP LD + R+L +L + + T + TH E
Sbjct: 139 GGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE 198
Query: 88 EA 89
EA
Sbjct: 199 EA 200
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 34.8 bits (80), Expect = 0.005
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 11/67 (16%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD-----PVLANIFWRYLNRLSVQ-GQTIIIT 82
GG+ +R IA+ + ++LDEPTS LD VLA + +RLS + G T+I
Sbjct: 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV-----HRLSQERGLTVIAV 204
Query: 83 THYIEEA 89
H I A
Sbjct: 205 LHDINMA 211
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 34.6 bits (79), Expect = 0.006
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR--YLNRLSVQGQTIIITTHYI 86
GGQ +R+ +A L + ++V LD+P S LD L++ + L L +T+++ TH +
Sbjct: 143 GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKL 202
Query: 87 E 87
+
Sbjct: 203 Q 203
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 34.9 bits (81), Expect = 0.006
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANI-FWRYLNRLSVQGQTIII 81
GG ++ +A LL +P ++ILDEPT G+D V A ++ +N+L QG II+
Sbjct: 408 GGNQQKAVLAKCLLLNPKILILDEPTRGID-VGAKYEIYKLINQLVQQGVAIIV 460
Score = 31.4 bits (72), Expect = 0.091
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GQ + V IA L L+ILDEPT+ L + + L G I +H + E
Sbjct: 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE 205
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 34.8 bits (80), Expect = 0.006
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 27 TVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIIT 82
T G ++ +S ++ SLV+ DE +G DP LA YL + Q ++IT
Sbjct: 385 TFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLIT 441
Query: 83 THYIE 87
THY E
Sbjct: 442 THYKE 446
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 34.4 bits (79), Expect = 0.007
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
G + + +A ++L +++LDEP++ LDP+ + + L + + T+I++ H IE
Sbjct: 142 GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIE 198
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 34.2 bits (79), Expect = 0.008
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP 59
GGQ + +S+ + LH P +++LDE T+ LDP
Sbjct: 151 GGQRQALSLLMATLHPPKILLLDEHTAALDP 181
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 34.5 bits (79), Expect = 0.009
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 12/70 (17%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYLNRLSVQGQTIIITTHYI 86
GG R+++A L P L++LDEPT+ LD L + W YL + +T I+ +H
Sbjct: 347 GGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLWLETYLLKWP---KTFIVVSH-- 399
Query: 87 EEARQ-ANTV 95
AR+ NTV
Sbjct: 400 --AREFLNTV 407
Score = 32.9 bits (75), Expect = 0.028
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 22 LLPNWTV-GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
L P +T+ GGQ RV+ A P +++LDEP++ LD
Sbjct: 622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 34.3 bits (79), Expect = 0.009
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD-----PVLANIFWRYLNRLSVQGQ 77
P GG+ +RV++A P ++ DEPT LD + +F LNR +G
Sbjct: 143 YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF--ALNR--ERGT 198
Query: 78 TIIITTH 84
T+++ TH
Sbjct: 199 TLVLVTH 205
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 34.2 bits (79), Expect = 0.010
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWR-YLNRLSVQGQTIIITTH 84
GQ +R+++ + L +++LDE + DP F++ L L G+TI +H
Sbjct: 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISH 508
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 34.1 bits (78), Expect = 0.013
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
P+ GG +RV IA+ L P+++I DEPT+ LD
Sbjct: 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
Score = 31.4 bits (71), Expect = 0.083
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R+ IA L +P ++I DE S LD
Sbjct: 466 GGQRQRICIARALALNPKVIIADEAVSALD 495
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 33.8 bits (78), Expect = 0.013
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG +R+ ++ L+ +P +++LDEPT+ LD + I W + QG +II +H
Sbjct: 159 GGWLRKAALGRALVSNPDVLLLDEPTNHLD--IETIEWLEGFLKTFQG-SIIFISH 211
Score = 31.1 bits (71), Expect = 0.13
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+ R+ +A L +L+ILDEPT+ LD
Sbjct: 443 GGERNRLLLARLFLKPSNLLILDEPTNDLD 472
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 33.5 bits (77), Expect = 0.015
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RV++A L+ P +++ DEP S LD
Sbjct: 139 GGQQQRVALARALILKPKVLLFDEPLSNLD 168
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 33.3 bits (77), Expect = 0.020
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 42 LHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTHYIE 87
SLV+ DE +G DP LA YL + +G II TTHY E
Sbjct: 405 ADKNSLVLFDELGAGTDPDEGAALAISILEYLRK---RGAKIIATTHYKE 451
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 33.4 bits (77), Expect = 0.022
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV 74
GGQ +R+ IA L+ P +++ DE TS LD I L RL V
Sbjct: 591 GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKV 636
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 33.1 bits (76), Expect = 0.022
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTH 84
GG ++R+ IA+ LL +I DEPT+ LD V L + + +++ TH
Sbjct: 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 33.0 bits (75), Expect = 0.023
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R IA+ L ++++LDEPT+ LD
Sbjct: 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 33.0 bits (75), Expect = 0.026
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW-RYLNRLSVQGQTIIITTH---Y 85
GQ +R+++ L +++ DE + DP F+ L L QG+TIII +H Y
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQY 533
Query: 86 IEEARQ 91
E A Q
Sbjct: 534 FELADQ 539
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 33.0 bits (75), Expect = 0.028
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIE 87
G + + +A ++L +++LDEP++ LDPV I + L + S T+I++ H +E
Sbjct: 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ-SFSNCTVILSEHRVE 1413
Score = 31.8 bits (72), Expect = 0.082
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P + LD V IF L +L +T I+ T +E
Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN-KTRILVTSKLE 609
Query: 88 EARQANTVF 96
++A+ +
Sbjct: 610 HLKKADKIL 618
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 32.9 bits (75), Expect = 0.031
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ +R++IA +L + +++LDE TS LD ++ L + +T I H +
Sbjct: 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST 532
Query: 89 ARQANTV 95
R A+ V
Sbjct: 533 VRNADLV 539
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 32.7 bits (75), Expect = 0.031
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+++RV+IA L DEP+S LD
Sbjct: 142 GGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 32.4 bits (74), Expect = 0.031
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
+ + ILDEP + L P L L+ G III TH
Sbjct: 144 FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATH 186
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 32.0 bits (72), Expect = 0.036
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 29 GGQVRRVSIAVTLL--HSPSLVILDEPTSGLDPVLANIFWRY------LNRLSVQGQTII 80
G R+ +A+ L P ++ILDE TS LD + L S + T+I
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVI 120
Query: 81 ITTHYIEEARQANTVF 96
+TT+ ++ A
Sbjct: 121 LTTNDEKDLGPALLRR 136
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 32.1 bits (74), Expect = 0.037
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDP 59
N +VG Q + + +A LL +++LDE T+ +DP
Sbjct: 139 NLSVG-QRQLLCLARALLRKSKILVLDEATASVDP 172
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.4 bits (74), Expect = 0.038
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 29 GGQVRRVSIA--------VTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQG 76
GG+ S+A + L+ LDEP LD LA I L L G
Sbjct: 818 GGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEI----LEELLSDG 873
Query: 77 QTIIITTH 84
+ III +H
Sbjct: 874 RQIIIISH 881
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 31.9 bits (73), Expect = 0.044
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGL 57
R E+L R L GQ + + I + L P L++LDEP +G+
Sbjct: 127 RIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 32.3 bits (73), Expect = 0.047
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +RVS+A + + + I D+P S LD +A+ + + ++G+T ++ T+
Sbjct: 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 32.1 bits (73), Expect = 0.058
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTHYIE 87
GG +RV +A ++++DEP S LDP++ L L S +TI+ +H ++
Sbjct: 167 GGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLD 226
Query: 88 EA 89
EA
Sbjct: 227 EA 228
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 32.0 bits (73), Expect = 0.071
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 37 IAVTLLHS-----PS-LVILDEPTSGLDPVLANI--FWRYLNRLSVQGQTIIIT 82
A+ LL + P+ ILDE + LD AN+ F L S Q I+IT
Sbjct: 1098 TALALLFAIFKVKPAPFCILDEVDAPLDD--ANVERFANLLKEFSKNTQFIVIT 1149
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 31.6 bits (72), Expect = 0.075
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 47 LVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84
++++DEP + L P L R+L +L+ + + IIITTH
Sbjct: 277 ILLIDEPEAHLHPTLQKELIRFLKKLAKKNNKQIIITTH 315
>gnl|CDD|226121 COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD
family [DNA replication, recombination, and repair].
Length = 581
Score = 31.6 bits (72), Expect = 0.090
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 45 PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQAN 93
P++++++EP + L P L + W LN L + Q I+TTH A+
Sbjct: 302 PNILLIEEPEAHLHPQLQAVLWDLLNNLPLGLQ-RIVTTHSPHLLSLAD 349
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 30.9 bits (71), Expect = 0.091
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 41 LLHSPS-LVILDEPTSGLDPVLANI--FWRYLNRLSVQGQTIIIT 82
PS +LDE + LD AN+ F R L S + Q I+IT
Sbjct: 131 FRVRPSPFCVLDEVDAALDD--ANVERFARLLKEFSKETQFIVIT 173
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 31.1 bits (70), Expect = 0.11
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYLNRLSV-QGQTIIITTHYI 86
GGQ +RVS+A + + + + D+P S +D V +IF + V + +T I+ TH I
Sbjct: 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822
Query: 87 EEARQANTV 95
Q + +
Sbjct: 823 SYLPQVDVI 831
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 30.9 bits (70), Expect = 0.13
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 23 LPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD----PVLANIFWRYLNRLSVQGQT 78
LP GG+ +RV++A P ++ DEPT LD +A++ + LNR G T
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS-LNR--EHGTT 199
Query: 79 IIITTH 84
+I+ TH
Sbjct: 200 LILVTH 205
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 30.9 bits (70), Expect = 0.13
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 6 RPAEILTRTR-DFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
+ A++LTR L L P GG+ +RV+IA + +++LDEPT+ LD
Sbjct: 131 KAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 30.7 bits (70), Expect = 0.14
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLA-NIFWRYLNRLSVQGQTIIITTHYIE 87
+ ++L SLV++DE G I + L L +G + TH+ E
Sbjct: 98 ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHE 152
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.8 bits (70), Expect = 0.15
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 29 GGQVRRVSIAV---TLLHSPS-LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
GG+ ++A+ + P+ +LDE + LD R + +S + Q I+IT
Sbjct: 1069 GGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 30.9 bits (70), Expect = 0.15
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+ R+ +A+ + P+L++LDEPT+ LD
Sbjct: 433 GGEKARLVLALIVWQRPNLLLLDEPTNHLD 462
Score = 29.8 bits (67), Expect = 0.32
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYLNRLSVQGQTIIITTH 84
GG R+++A L+ L++LDEPT+ LD L + W ++L S QG T+I+ +H
Sbjct: 152 GGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIWLEKWLK--SYQG-TLILISH 204
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 0.16
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
R+++++ L + L+ILDEPT LD L +I RYL ++ Q II++ + EE
Sbjct: 802 RLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIP---QVIIVS--HDEEL 856
Query: 90 RQA 92
+ A
Sbjct: 857 KDA 859
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 30.3 bits (69), Expect = 0.19
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 29 GGQVRRVSIAVTLLHSPSLV----ILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +R+ +A T + S L +LDEP+ GL P + L RL G T+++ H
Sbjct: 140 GGEAQRIRLA-TQIGS-GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197
Query: 85 YIEEARQANTV 95
+ R A+ V
Sbjct: 198 DEDTIRAADHV 208
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 30.4 bits (70), Expect = 0.21
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 29 GGQVRRVSIAVTLLHSP---SLVILDEPTSGL--DPV--LANIFWRYLNRLSVQGQTIII 81
GG+ +RV +A L +L ILDEPT+GL + + L + L+RL +G T+++
Sbjct: 833 GGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEV----LHRLVDKGNTVVV 888
Query: 82 TTH 84
H
Sbjct: 889 IEH 891
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 29.8 bits (67), Expect = 0.24
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLN-RLSVQGQTIIITTH 84
GQ +R+++A L L +LDEP + LD + R ++ L G ++TTH
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAA-LVTTH 195
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 30.1 bits (68), Expect = 0.24
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +R+S+ L P +++LDE TS LD + I RY+ Q ++ TH
Sbjct: 140 GGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE---QNIAVLWVTH 196
Query: 85 YIEEARQANTV 95
+E A+ V
Sbjct: 197 DKDEINHADKV 207
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 30.1 bits (69), Expect = 0.24
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 29 GGQVRRVSIAVTLL------HSPSLVILDEPTSGLDP 59
GG+ +RV +A L P ++LDEPTS LD
Sbjct: 137 GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 29.6 bits (67), Expect = 0.32
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 29 GGQVRRVSIAVTL-LHS--PS-LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ ++A+ L PS +LDE + LDP + ++ I+ T
Sbjct: 97 GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 29.9 bits (68), Expect = 0.33
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYL-NRLSVQGQTIIITTH 84
RV +A L +P +++LDEPT+ LD + I W L + L+ + T+II +H
Sbjct: 163 RVLLAQALFSNPDILLLDEPTNNLD--INTIRW--LEDVLNERNSTMIIISH 210
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 29.7 bits (67), Expect = 0.34
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RVS+A + + + I D+P S LD
Sbjct: 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 28.3 bits (64), Expect = 0.37
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 43 HSPSLVILDEPTSGLDP 59
+P L+ LDE + LD
Sbjct: 51 PAPRLIFLDEAFAKLDE 67
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 29.4 bits (66), Expect = 0.42
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
P+ GQ +RV++A L+ P ++I DE + LD
Sbjct: 147 PHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 29.2 bits (66), Expect = 0.52
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 46 SLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTHYIE-EARQANT 94
SLV+ DE SG DP LA L + I+ TTHY E +A A
Sbjct: 397 SLVLFDELGSGTDPDEGAALAIAILEDLLE---KPAKIVATTHYRELKALAAER 447
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 29.1 bits (65), Expect = 0.53
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD IF + +L + +T I+ T +E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKL-MANKTRILVTSKME 220
Query: 88 EARQANTV 95
++A+ +
Sbjct: 221 HLKKADKI 228
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.4 bits (66), Expect = 0.54
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYI 86
GGQ RVS+A + + + +LD+P S LD + ++ G+T ++ TH +
Sbjct: 785 GGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 29.0 bits (65), Expect = 0.58
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GG+ +RV +A L + +++LDEPT+ LD
Sbjct: 142 GGERQRVLLARALAQATPVLLLDEPTASLD 171
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 29.0 bits (65), Expect = 0.59
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 46 SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
SLVILDE D + L L+ G +++ +
Sbjct: 340 SLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMS 377
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 28.9 bits (65), Expect = 0.59
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP 59
GG+ +R+++A H P ILDE TS +
Sbjct: 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSV 615
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 28.7 bits (65), Expect = 0.69
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGL 57
GQ + + I + L+ P L++LDEP +G+
Sbjct: 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 28.5 bits (64), Expect = 0.80
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 29 GGQVRRVSIAVTL--LH----SPSLVILDEPTSGLDP 59
GG+ +RV +A L L S + LDEPTS LD
Sbjct: 138 GGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 27.9 bits (62), Expect = 1.2
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G R+ A+++ +P ++++DE S D +N QG+TI +H + +
Sbjct: 147 GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQV 206
Query: 90 R 90
+
Sbjct: 207 K 207
>gnl|CDD|227274 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 28.0 bits (62), Expect = 1.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 46 SLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
L+I++ P + L P + L L+ +G +++ TH
Sbjct: 262 YLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETH 300
>gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 27.8 bits (62), Expect = 1.5
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 39 VTLLHSPS---LVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91
TLL SP L++LDEP + L P L + + + Q +I++TH
Sbjct: 282 ATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ-VIVSTHSPRLLNA 336
>gnl|CDD|182700 PRK10752, PRK10752, sulfate transporter subunit; Provisional.
Length = 329
Score = 27.5 bits (61), Expect = 2.0
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 44 SPSLVILDEPT-SGLDPV--------LANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94
+PS IL EPT S +D V +A + +YL S +GQ I +Y +
Sbjct: 231 TPSESILAEPTVSVVDKVVDKKGTREVAEAYLKYL--YSPEGQEIAAKNYYRPRDAEVAK 288
Query: 95 VFGGFFAPKLHL 106
+ F PKL L
Sbjct: 289 KYENAF-PKLKL 299
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 27.6 bits (61), Expect = 2.0
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 48 VILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
V++D+P S D + + + +I+ TH
Sbjct: 559 VVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTH 595
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 26.6 bits (59), Expect = 2.9
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GQ + + +A LL P +++LDE T+ +D + + + R TI+ H
Sbjct: 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTI-REEFTNSTILTIAH 182
>gnl|CDD|152816 pfam12381, Peptidase_C3G, Tungro spherical virus-type peptidase.
This is the protease for self-cleavage of the positive
single-stranded polyproteins of a number of plant viral
genomes. The protease activity of the polyprotein is at
the C-terminal end, adjacent to the putative RNA
polymerase.
Length = 231
Score = 26.8 bits (59), Expect = 3.0
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 45 PSLV-ILDEPTSGLDPVLANIF---WRYLNRLSVQGQTIIITTHYIEEARQANTVF 96
P++V ILD +G+ V+ N + Y N L + G ++ HY+E + +T++
Sbjct: 8 PNMVNILDTHLAGISCVIINETPNRFAYFNVLRLCGTYVVCPAHYLEALEEEDTLY 63
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 26.5 bits (58), Expect = 3.3
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GQ R+V++ + L +LDEP LD + + +G +++T+H
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 26.9 bits (59), Expect = 3.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 34 RVSIAVTLLHSPSLVILDEPTSGLD 58
R+++A T + ++ LDEPT+ LD
Sbjct: 1213 RLALAETFCLNCGIIALDEPTTNLD 1237
>gnl|CDD|117287 pfam08714, Fae, Formaldehyde-activating enzyme (Fae).
Formaldehyde-activating enzyme is an enzyme required
for energy metabolism and formaldehyde detoxification.
It catalyzes the condensation of formaldehyde and
tetrahydromethanopterin to methylene
tetrahydromethanopterin.
Length = 160
Score = 26.4 bits (59), Expect = 4.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 50 LDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97
L ++G P+LA + N L V+ T+++ I+ A+QA +FG
Sbjct: 34 LTNQSAGHTPLLAVL---RPN-LPVKPATLMVPKVTIKNAKQAEQMFG 77
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 26.4 bits (59), Expect = 4.3
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 44 SPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTHYIE 87
SLV+LDE G +A YL L G + THY E
Sbjct: 78 KNSLVLLDELGRGTSTYDGLAIAAAILEYL--LEKIGARTLFATHYHE 123
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 26.3 bits (59), Expect = 4.3
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 8 AEILTRTRDFA----LRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
AEI R + A L LL P GGQ +RV++ ++ P++ + DEP S LD
Sbjct: 109 AEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 26.3 bits (58), Expect = 4.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
P+ GQ +R+ +A L+ P ++I DE + LD
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 26.2 bits (58), Expect = 5.7
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GQ + +++A L+ +P ++ILDE T+ +D
Sbjct: 480 GQKQLLALARVLVQTPQILILDEATANID 508
>gnl|CDD|213244 cd03277, ABC_SMC5_euk, ATP-binding cassette domain of eukaryotic
SMC5 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 213
Score = 25.6 bits (57), Expect = 7.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 5 LRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLL------HSPSLVILDEPTSGLD 58
L P E+L + R+ + L G R VS + LL P V+ DE G+D
Sbjct: 104 LSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVV-DEINQGMD 162
Query: 59 PV 60
P
Sbjct: 163 PT 164
>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic
MutS5 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 213
Score = 25.7 bits (57), Expect = 7.2
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 10 ILTR--TRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLA 62
I TR +R+ + +VS A+ L SLV++DE G D +L
Sbjct: 75 IFTRMSSRESVSSGQS---AFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLI 131
Query: 63 NIFWRYLNRLSVQGQTIIITTHYIE 87
L R + +I++TH+ E
Sbjct: 132 ATIEHLLKRGPECPR-VIVSTHFHE 155
>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional.
Length = 454
Score = 25.7 bits (57), Expect = 7.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 45 PSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTI 79
P+ V+LD GLD +A F R L RLS G I
Sbjct: 257 PTTVVLD----GLDATVAAAFERALKRLSAAGAII 287
>gnl|CDD|216041 pfam00648, Peptidase_C2, Calpain family cysteine protease.
Length = 302
Score = 25.5 bits (56), Expect = 7.9
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 50 LDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGG 98
L + S L+ L I + L R S+ G +I IT+ EAR + G
Sbjct: 173 LKQAPSDLN--LFKIIAKALERGSLMGCSIDITSPVDMEARTFKGLVKG 219
>gnl|CDD|172418 PRK13898, PRK13898, type IV secretion system ATPase VirB4;
Provisional.
Length = 800
Score = 25.5 bits (56), Expect = 9.0
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 37 IAVTLLHSPSLVILDEPTSGLD-PVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
I+++L +PS+++LDE + +D PV A +L L +I T +E+A
Sbjct: 635 ISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688
>gnl|CDD|225429 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal
flagella [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 235
Score = 25.3 bits (56), Expect = 9.6
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 46 SLVILDEPTSGL---DPVLANIFWRYLNRLSVQGQTIIITTH 84
++I+D ++ F +L +LS G+ II+T H
Sbjct: 125 DVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVH 166
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.398
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,379,336
Number of extensions: 572417
Number of successful extensions: 965
Number of sequences better than 10.0: 1
Number of HSP's gapped: 873
Number of HSP's successfully gapped: 418
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)