RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6940
(123 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 94.9 bits (237), Expect = 2e-25
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
G VR++ IA L+ +P L ILDEPTSGLD + A + L + S +G TI++++H + E
Sbjct: 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLE 208
Query: 89 ARQ 91
Sbjct: 209 VEF 211
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 84.5 bits (210), Expect = 1e-21
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
G +RRV +A TLL + + +LD+P +D + + + + + G II + +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS 195
Query: 88 EA 89
Sbjct: 196 YC 197
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 74.5 bits (184), Expect = 2e-17
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ RRV+IA ++H P ++ILDEP GLD R + + G+T+I+ +H IE
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200
Query: 89 A 89
Sbjct: 201 V 201
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 73.0 bits (180), Expect = 8e-17
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQ--TIIITTHYI 86
G+ +RV IA L+ P ++ILDEP +GLD + L+ LS +I TH+I
Sbjct: 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI 223
Query: 87 EEARQ 91
EE
Sbjct: 224 EEITA 228
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 69.1 bits (170), Expect = 2e-15
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GQ +RV+IA L+ P ++ILDEPT+GLDP+ + + L + + G TIII TH I+
Sbjct: 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205
Query: 88 EA 89
Sbjct: 206 IV 207
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 65.1 bits (159), Expect = 5e-14
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GQ V ++ L P +V LDEP +D ++ RY+ G+ I+ TH ++
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEGILVTHELDM 187
Query: 89 A 89
Sbjct: 188 L 188
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 63.5 bits (155), Expect = 3e-13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GG+++++ IA TL L +LD+P+S LD I + + R++ + I H +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS 447
Query: 88 EARQ 91
Sbjct: 448 IHDY 451
Score = 55.4 bits (134), Expect = 2e-10
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG ++R+ +A +LL + I D+P+S LD + + L ++ + +I+ H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL-LKNKYVIVVDH 195
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 58.5 bits (142), Expect = 2e-11
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSV-QGQTIIITTHYIE 87
GG+++RV+I + L + ++DEP++ LD I + + R + +T I H
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529
Query: 88 EARQ 91
A
Sbjct: 530 MATY 533
Score = 55.0 bits (133), Expect = 3e-10
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+++R +I ++ + + + DEP+S LD + + L + +I H
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 55.6 bits (135), Expect = 1e-10
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ +RV+IA L + P L+ DEPT LD +++ G +I++ TH E
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202
Query: 89 ARQAN 93
A +
Sbjct: 203 AELTH 207
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 56.2 bits (136), Expect = 1e-10
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84
GG+++RV+IA TLL + +LDEP++ LD R + L + +T ++ H
Sbjct: 474 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 55.4 bits (134), Expect = 3e-10
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 4 LLRPAEILTR----TRDFALRKLLPNWTV----GGQVRRVSIAVTLLHSPSLVILDEPTS 55
LL+ + + + ++ L +L + + GG+++RV+IA LL DEP+S
Sbjct: 199 LLKKVDEVGKFEEVVKELELENVL-DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 56 GLD-PVLANIFWRYLNRLSVQGQTIIITTH 84
LD + + RL+ +G+ +++ H
Sbjct: 258 YLDIRQRLKVAR-VIRRLANEGKAVLVVEH 286
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 52.5 bits (127), Expect = 2e-09
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITT 83
GGQ +RV+IA L ++P +++ D+PT LD ++ + + LN G+T+++ T
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIM-QLLKK-LNE--EDGKTVVVVT 203
Query: 84 HYIEEARQAN 93
H I AR
Sbjct: 204 HDINVARFGE 213
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 52.2 bits (126), Expect = 2e-09
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLAN--IFWRYLNRLSV-QGQTIIITTHY 85
GGQ + + IA + L++LDEPTS LD LAN I L L+ Q T++ TTH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALD--LANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
Query: 86 IEEA 89
+
Sbjct: 189 PNQV 192
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 52.7 bits (127), Expect = 2e-09
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTH 84
GG+++RV+IA TLL + +LDEP++ LD R + L + +T ++ H
Sbjct: 404 GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 460
Score = 49.6 bits (119), Expect = 2e-08
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPV----LANIFWRYLNRLSVQGQTIIITTH 84
GG+++RV+IA LL + + DEP+S LD A + RLS +G+++++ H
Sbjct: 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA----IRRLSEEGKSVLVVEH 216
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 52.7 bits (126), Expect = 3e-09
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYLNRLSVQGQTIIITTH 84
GG ++++A +L + +++LDEPT+ LD N+ W YLN + T I +H
Sbjct: 551 GGWKMKLALARAVLRNADILLLDEPTNHLD--TVNVAWLVNYLNTCGI---TSITISH 603
Score = 49.3 bits (117), Expect = 4e-08
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFW--RYLNRLSVQGQTIIITTH 84
GGQ ++ +A P L++LDEPT+ LD ++ + L +G +II TH
Sbjct: 904 GGQKVKLVLAAGTWQRPHLIVLDEPTNYLD--RDSLGALSKALKEF--EG-GVIIITH 956
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 51.6 bits (123), Expect = 5e-09
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 29 GGQVRRVSIAV------TLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
GG+ + +A L SL+ILDEPT LD + R + +I+
Sbjct: 251 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV 310
Query: 83 THYIEEARQANTVF 96
+H E A+ V
Sbjct: 311 SHDEELKDAADHVI 324
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 49.9 bits (120), Expect = 2e-08
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITT 83
GGQ +RVSIA L P +++ DEPTS LDP VL + +L+ +G+T+++ T
Sbjct: 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM-----QQLAEEGKTMVVVT 210
Query: 84 HYIEEARQ-ANTV 95
H + AR ++ V
Sbjct: 211 HEMGFARHVSSHV 223
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 47.6 bits (114), Expect = 9e-08
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITT 83
GGQ +RV+IA L P +++ DEPTS LDP VL+ + +L+ +G T+++ T
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM-----KQLANEGMTMVVVT 216
Query: 84 HYIEEARQ-ANTV 95
H + AR+ + V
Sbjct: 217 HEMGFAREVGDRV 229
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 47.1 bits (113), Expect = 2e-07
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II H
Sbjct: 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 47.2 bits (113), Expect = 2e-07
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +R++IA LL P +VI DE TS LD +F + + L + +T+II H
Sbjct: 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAH 212
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 47.0 bits (112), Expect = 2e-07
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ +R++IA L+ +P +++LDE TS LD + L++ +G+T I+ H
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAH 583
Score = 43.9 bits (104), Expect = 3e-06
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+ P +++LDE TS LD + L++ G+T I+ H +
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVIAHRLST 1232
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 1233 IQNADLIV 1240
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 45.7 bits (109), Expect = 6e-07
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GG+ +RV+IA T+L +P +++LDE TS LD L ++ +T I+ H
Sbjct: 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAH 247
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 45.0 bits (107), Expect = 1e-06
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQGQTIIITT 83
GGQ +RV+IA L +P +++ D+ TS LDP +L + + +NR G TI++ T
Sbjct: 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL--KDINR--RLGLTILLIT 221
Query: 84 H 84
H
Sbjct: 222 H 222
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 43.3 bits (103), Expect = 4e-06
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTH 84
GGQ++ V I L+ +P ++++DEP +G+ P LA+ + ++ L +G T +I H
Sbjct: 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 42.4 bits (100), Expect = 4e-06
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 29 GGQVRRVSIA------VTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIIT 82
GG+ + +A + L SL+ILDEPT LD + R + +I+
Sbjct: 60 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILV 119
Query: 83 THYIEEARQANTV 95
+H E A+ V
Sbjct: 120 SHDEELKDAADHV 132
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 42.5 bits (101), Expect = 6e-06
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R++IA L +P +++LDE T+ LD
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLD 171
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 41.8 bits (99), Expect = 1e-05
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 17/68 (25%)
Query: 29 GGQVRRVSIAVTLL-------HSPSLVILDEPTSGLDP-----VLANIFWRYLNRLSVQG 76
GG+ +RV +A +L + L++LDEP + LD + + L+ LS QG
Sbjct: 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-----KILSALSQQG 183
Query: 77 QTIIITTH 84
I++++H
Sbjct: 184 LAIVMSSH 191
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 41.0 bits (97), Expect = 2e-05
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTH 84
GGQ + V++A L+ P L+ILD TS LD R L +T+++ T
Sbjct: 159 GGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 41.0 bits (97), Expect = 2e-05
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 21/89 (23%)
Query: 11 LTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLN 70
RK P GG+ +RV++A L+ P L++LDEP S +D
Sbjct: 113 KLGIAHLLDRK--PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKT--------- 161
Query: 71 RLSVQ----------GQTIIITTHYIEEA 89
+ + I+ TH + EA
Sbjct: 162 KGVLMEELRFVQREFDVPILHVTHDLIEA 190
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 41.0 bits (96), Expect = 3e-05
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 29 GGQVRRVSIAVTL-------LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII 81
GG+ V++++ L + +ILDEPT LD ++ Q III
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIII 342
Query: 82 T 82
T
Sbjct: 343 T 343
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 41.0 bits (97), Expect = 3e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R+SIA L++P ++ILDE TS LD
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALD 509
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 39.1 bits (92), Expect = 1e-04
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R++IA LL ++ILDE TS LD
Sbjct: 483 GGQRQRIAIARALLRDSPILILDEATSALD 512
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 39.1 bits (92), Expect = 1e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RV+IA LL ++ILDE TS LD
Sbjct: 483 GGQRQRVAIARALLRDAPVLILDEATSALD 512
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 38.7 bits (91), Expect = 2e-04
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 19/71 (26%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ----------GQT 78
GG+ +RV++A L+ +P +++LDEP S LDP + + + T
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRT---------QENAREMLSVLHKKNKLT 180
Query: 79 IIITTHYIEEA 89
++ TH EA
Sbjct: 181 VLHITHDQTEA 191
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 38.3 bits (90), Expect = 2e-04
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R++IA LL +P +++LDE TS LD
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALD 515
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 37.9 bits (89), Expect = 3e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 19/71 (26%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ----------GQT 78
GGQ +R ++A L P L++LDEP S LD L R ++ G++
Sbjct: 141 GGQQQRAALARALAPDPELILLDEPFSALDEQL---------RRQIREDMIAALRANGKS 191
Query: 79 IIITTHYIEEA 89
+ +H EEA
Sbjct: 192 AVFVSHDREEA 202
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 35.3 bits (82), Expect = 0.002
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 19/71 (26%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ----------GQT 78
GGQ +RV++A L P +++ DEP + +D + R ++ G T
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQI---------RRELRTFVRQVHDEMGVT 198
Query: 79 IIITTHYIEEA 89
+ TH EEA
Sbjct: 199 SVFVTHDQEEA 209
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 35.1 bits (81), Expect = 0.003
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 25 NWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDP 59
+ G + + +A ++L +++LDEP++ LDP
Sbjct: 155 VLSHG-HKQLMCLARSVLSKAKILLLDEPSAHLDP 188
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 34.6 bits (80), Expect = 0.004
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD IF + +L + +T I+ T +E
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 220
Query: 88 EARQANTV 95
++A+ +
Sbjct: 221 HLKKADKI 228
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 34.8 bits (81), Expect = 0.004
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +R+SIA L+ P ++ILD+ TS +D
Sbjct: 482 GGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 34.4 bits (80), Expect = 0.004
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYL-NRLSVQGQTIIITTHYI 86
GGQ +RVS+A + + + + D+P S +D V +IF + + ++ +T I+ TH +
Sbjct: 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSM 189
Query: 87 EEARQANTV 95
Q + +
Sbjct: 190 SYLPQVDVI 198
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 34.4 bits (80), Expect = 0.004
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL-ANIFWRYLNRLSVQGQTIII 81
GG+ + ++I L+ P L+++DEP+ GL P+L + +F + +++ +G TI++
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF-EVIQKINQEGTTILL 194
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 34.1 bits (79), Expect = 0.005
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDP-VLANIFWRYLNRLSVQGQTIIITTHYIE 87
GGQ R+S+A + L +LD P LD IF + +L + +T I+ T +E
Sbjct: 133 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL-MANKTRILVTSKME 191
Query: 88 EARQANTV 95
++A+ +
Sbjct: 192 HLKKADKI 199
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 34.1 bits (79), Expect = 0.005
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 45 PSLVILDEPTSGLD----PVLANIFWRYLNRLSVQGQTIIITTHY 85
P L ILDE SGLD V+A+ +N L ++ II THY
Sbjct: 183 PELCILDESDSGLDIDALKVVAD----GVNSLRDGKRSFIIVTHY 223
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 33.3 bits (77), Expect = 0.010
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 45 PSLVILDEPTSGLD----PVLANIFWRYLNRLSVQGQTIIITTHY 85
P+ +LDE SGLD V+A +N + ++ THY
Sbjct: 162 PTYAVLDETDSGLDIDALKVVAR----GVNAMRGPNFGALVITHY 202
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 31.1 bits (71), Expect = 0.073
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
G Q +RV++A L+ PSL++LDEP S LD
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 31.0 bits (71), Expect = 0.079
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GQ + ++I L +P ++ILDE TS +D
Sbjct: 495 GQRQLLAITRAFLANPKILILDEATSNVD 523
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 30.9 bits (71), Expect = 0.083
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 49 ILDEPTSGLDP----VLANIFWRYLNRLSVQGQTIIITTH 84
+LDEPT+GL P L L +L G T+I H
Sbjct: 756 VLDEPTTGLHPADVERLQRQ----LVKLVDAGNTVIAVEH 791
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.9 bits (71), Expect = 0.093
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 29 GGQVRRVSIAVTLLHSPS----LVILDEPTSGL---D-PVLANIFWRYLNRLSVQGQTII 80
GG+ +R+ +A + L L ILDEPT GL D L + L+RL +G T+I
Sbjct: 808 GGEAQRIKLA-SELRKRDTGRTLYILDEPTVGLHFEDVRKLVEV----LHRLVDRGNTVI 862
Query: 81 ITTH 84
+ H
Sbjct: 863 VIEH 866
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 30.3 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 38 AVTLLHS-----PS-LVILDEPTSGLDPVLANI--FWRYLNRLSVQGQTIIIT 82
+ LL + PS +LDE S LD N F R L S Q I+IT
Sbjct: 229 GLALLFALMEIKPSPFYVLDEVDSPLDD--YNAERFKRLLKENSKHTQFIVIT 279
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.15
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 43/124 (34%)
Query: 2 SLLLRPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVL 61
++ LR I R K N L++L V
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYEN--------------------CLLVLLN-------V- 253
Query: 62 ANIFW--RYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAPKLHLSLNESELLVYK-- 117
+ N ++ + ++ T R A H+SL+ + +
Sbjct: 254 ----QNAKAWNAFNLSCKILLTT-------RFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 118 TVEL 121
L
Sbjct: 303 VKSL 306
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 30.2 bits (69), Expect = 0.17
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 49 ILDEPTSGL--DPV--LANIFWRYLNRLSVQGQTIIITTH 84
ILDEPT+GL D + L ++ L+RL G T+++ H
Sbjct: 569 ILDEPTTGLHVDDIARLLDV----LHRLVDNGDTVLVIEH 604
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 29.8 bits (68), Expect = 0.17
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 49 ILDEPTSGL--DPV--LANIFWRYLNRLSVQGQTIIITTH 84
ILDEPT+GL D + L ++ L+RL G T+++ H
Sbjct: 871 ILDEPTTGLHVDDIARLLDV----LHRLVDNGDTVLVIEH 906
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 29.8 bits (68), Expect = 0.20
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 49 ILDEPTSGL--DPV--LANIFWRYLNRLSVQGQTIIITTH 84
ILDEPT+GL D + L N+ +N L +G T+I+ H
Sbjct: 889 ILDEPTTGLHFDDIRKLLNV----INGLVDKGNTVIVIEH 924
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 29.2 bits (66), Expect = 0.24
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 38 AVTLLHS-----PS-LVILDEPTSGLDPVLANI--FWRYLNRLSVQGQTIIIT 82
A+ + + P+ + DE + LD AN+ + S + Q I+IT
Sbjct: 74 ALAFVFAIQKFKPAPFYLFDEIDAHLDD--ANVKRVADLIKESSKESQFIVIT 124
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 29.4 bits (66), Expect = 0.26
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 49 ILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQA 92
+DE S LD L L + I+ TH E +A
Sbjct: 308 FIDEGFSSLDTENKEKIASVLKELERLNKVIVFITH-DREFSEA 350
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 28.3 bits (64), Expect = 0.60
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RV+IA L+ P +++LDEP S LD
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 28.0 bits (63), Expect = 0.76
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 21 KLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANI 64
+ + R+ + + +D P SGLD +
Sbjct: 272 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM 315
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 27.6 bits (62), Expect = 1.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 8 AEILTRTRDFA----LRKLL---PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
E+ R + A + LL P GGQ +RV++A L+ P +++ DEP S LD
Sbjct: 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 27.2 bits (61), Expect = 1.3
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RV++A ++ P ++++DEP S LD
Sbjct: 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 27.4 bits (61), Expect = 1.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
Query: 38 AVTLL---HS--PS-LVILDEPTSGLDPVLANIFWRYLNRLSVQG-QTIIIT 82
A+ LL +S PS +LDE + LD Y+ R Q I+I+
Sbjct: 343 ALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVIS 394
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 26.4 bits (59), Expect = 2.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLD 58
GGQ +RV++ ++ P + ++DEP S LD
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
>3rmi_A Chorismate mutase protein; emerald biostructures, structural
genomics, seattle structur genomics center for
infectious disease, ssgcid; 2.40A {Bartonella henselae}
Length = 114
Score = 25.1 bits (55), Expect = 4.1
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 55 SGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94
+ DP A F +++ + V +I I++ +
Sbjct: 73 THFDPDFAEKFLKFIIKEVVHQHEVIAEKQKIKKENLNES 112
>1lnl_A Hemocyanin; deoxygenated form, oxygen, metal binding site,
cooperativity, oxygen storage-transport complex; HET:
NAG; 3.30A {Rapana thomasiana} SCOP: a.86.1.1 b.112.1.1
Length = 408
Score = 25.9 bits (56), Expect = 4.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 72 LSVQGQTIIITTHYIEEARQANTVFGGFFAPKLHLS 107
L +QG + YI + ++A+ VF GF + S
Sbjct: 288 LELQGMNVQRLHDYINQQKEADRVFAGFLLEGIGTS 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.398
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,828,879
Number of extensions: 100283
Number of successful extensions: 282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 78
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)