RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6940
(123 letters)
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 74.6 bits (183), Expect = 6e-18
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
+ +IL + L GGQ++ V I L+ +P ++++DEP +G+ P LA+
Sbjct: 130 KAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 189
Query: 66 WRYLNRLSVQGQTIIITTHYIEEARQ 91
+ ++ L +G T +I H ++
Sbjct: 190 FNHVLELKAKGITFLIIEHRLDIVLN 215
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 72.9 bits (179), Expect = 1e-17
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIITTHYIE 87
GGQ +RV+IA L ++P +++ D+PT LD + L +L+ + G+T+++ TH I
Sbjct: 148 GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
Query: 88 EARQANTV 95
AR +
Sbjct: 208 VARFGERI 215
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 72.3 bits (177), Expect = 3e-17
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GG+ + ++I L+ P L+++DEP+ GL P+L + + + +++ +G TI++
Sbjct: 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALG 201
Query: 89 ARQ 91
A +
Sbjct: 202 ALK 204
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 69.4 bits (170), Expect = 3e-16
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R + L P GGQ +RV++A ++ P ++++DEP S LD L
Sbjct: 116 RVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 175
Query: 66 WRYLNRLSVQ-GQTIIITTHYIEEARQ 91
+ +L + T I TH EA
Sbjct: 176 RAEIKKLQQKLKVTTIYVTHDQVEAMT 202
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 67.9 bits (166), Expect = 2e-15
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA LL ++ILDE TS LD L+ L + +T ++ H +
Sbjct: 155 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST 213
Query: 89 ARQANTVF 96
QA+ +
Sbjct: 214 IEQADEIV 221
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 67.1 bits (164), Expect = 3e-15
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R+SIA L++P ++ILDE TS LD +I L+ LS + +T +I H +
Sbjct: 157 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST 215
Query: 89 ARQANTVF 96
A+ +
Sbjct: 216 ITHADKIV 223
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 66.5 bits (162), Expect = 7e-15
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ R+S+A + L +LD P LD + + +T I+ T +E
Sbjct: 161 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 220
Query: 89 ARQANTVF 96
R+A+ +
Sbjct: 221 LRKADKIL 228
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 65.4 bits (159), Expect = 1e-14
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
K + G VR++ IA L+ +P L ILDEPTSGLD + A
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 66 WRYLNRLSVQGQTIIITTHYIEEARQ 91
+ L + S +G TI++++H + E
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEF 198
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 64.1 bits (156), Expect = 4e-14
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
GQ +RVSIA L P +++ DEPTS LDP L R + +L+ +G+T+++ TH + A
Sbjct: 153 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFA 212
Query: 90 RQ 91
R
Sbjct: 213 RH 214
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 63.0 bits (153), Expect = 9e-14
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R E+L+ P+ GGQ +RV+IA L +P +++ DE TS LDP
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 66 WRYLNRL-SVQGQTIIITTHYIEEARQ 91
L + G TI++ TH ++ ++
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKR 206
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 63.0 bits (153), Expect = 9e-14
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRL-SVQGQTIIITTHYIE 87
GGQ +RV++ ++ P + ++DEP S LD L L +L G T I TH
Sbjct: 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 88 EARQ 91
EA
Sbjct: 202 EAMT 205
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 62.6 bits (152), Expect = 1e-13
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L +P +++LDE T+ LD ++ + L+ L +G+T ++ H +
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST 200
Query: 89 ARQANTVF 96
A+ ++
Sbjct: 201 IVDADKIY 208
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 61.9 bits (150), Expect = 2e-13
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEE 88
GGQ +R++IA L+++P ++I DE TS LD ++ R ++++ +G+T+II H +
Sbjct: 142 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST 200
Query: 89 ARQANTVF 96
+ A+ +
Sbjct: 201 VKNADRII 208
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 60.7 bits (147), Expect = 4e-13
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQ-GQTIIIT 82
G +RRV +A TLL + + +LD+P +D + + + + + G II +
Sbjct: 123 LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 182
Query: 83 THYIEEA 89
+
Sbjct: 183 REELSYC 189
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 62.2 bits (149), Expect = 4e-13
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 30 GQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEA 89
G R+++++ L SL+ILDEPT LD + R + +I+ +H E
Sbjct: 288 GLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK 347
Query: 90 RQANTVFG 97
A+ V
Sbjct: 348 DAADHVIR 355
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 58.8 bits (142), Expect = 3e-12
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLH-------SPSLVILDEPTSGLD 58
++ N GG+ +RV +A +L + L++LDEP + LD
Sbjct: 105 LLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 164
Query: 59 PVLANIFWRYLNRLSVQGQTIIITTHYIEEARQ 91
+ + L+ L QG I++++H + +
Sbjct: 165 VAQQSALDKILSALCQQGLAIVMSSHDLNHTLR 197
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 58.2 bits (139), Expect = 7e-12
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 33 RRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQA 92
R+++++ L SL+ILDEPT LD + R + +I+ +H E A
Sbjct: 214 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 273
Query: 93 NTV 95
+ V
Sbjct: 274 DHV 276
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 56.5 bits (136), Expect = 2e-11
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R ++ + L P GGQ +RV+I TL+ PS+ +LDEP S LD L
Sbjct: 110 RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 169
Query: 66 WRYLNRL-SVQGQTIIITTHYIEEARQ 91
++RL G+T+I TH EA
Sbjct: 170 RIEISRLHKRLGRTMIYVTHDQVEAMT 196
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 55.7 bits (134), Expect = 4e-11
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 29 GGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLS-VQGQTIIITTHYIE 87
GGQ + V++A L+ P ++ILD+ TS LD + L +++++ T ++
Sbjct: 154 GGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213
Query: 88 EARQANTVF 96
QA+ +
Sbjct: 214 LVEQADHIL 222
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 51.6 bits (123), Expect = 1e-09
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R + + L P GG+ +RV++A L+ +P +++LDEP S LDP
Sbjct: 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 66 WRYLNRL-SVQGQTIIITTHYIEEARQ 91
L+ L T++ TH EAR
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARI 193
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 50.5 bits (120), Expect = 4e-09
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R E+ + P G Q +RV++A L+ PSL++LDEP S LD + +
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 66 WRYLNRL-SVQGQTIIITTHYIEEARQ 91
+ + S G T+++ +H +
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFA 206
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 48.6 bits (114), Expect = 2e-08
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 37 IAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVF 96
A+ +LDE + LD Y+ R I+ + +++ +
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALV 406
Query: 97 G 97
G
Sbjct: 407 G 407
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 46.9 bits (111), Expect = 7e-08
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 6 RPAEILTRTRDFALRKLLPNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIF 65
R E+ + L P GG+ +RV++A L+ P L++LDEP S +D +
Sbjct: 106 RVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL 165
Query: 66 WRYLNRL-SVQGQTIIITTHYIEEARQ 91
L + I+ TH + EA
Sbjct: 166 MEELRFVQREFDVPILHVTHDLIEAAM 192
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 37.7 bits (86), Expect = 1e-04
Identities = 4/72 (5%), Positives = 15/72 (20%), Gaps = 1/72 (1%)
Query: 24 PNWTVGGQVRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITT 83
+ + + ++I+DE + ++ T
Sbjct: 79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL-VRQIMHDPNVNVVATI 137
Query: 84 HYIEEARQANTV 95
+ +
Sbjct: 138 PIRDVHPLVKEI 149
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 33.1 bits (74), Expect = 0.005
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 42 LHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97
+ +LDE S LD A F R L S Q I+ TH A+ + G
Sbjct: 239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQ-FIVITHNKIVMEAADLLHG 293
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 26.9 bits (58), Expect = 0.62
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 49 ILDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97
+ DE + LD + S + Q I+I T A+ + G
Sbjct: 251 LFDEIDAHLDDANVKRVADLIKESSKESQFIVI-TLRDVMMANADKIIG 298
>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply
{Listeria phage A500 [TaxId: 40522]}
Length = 148
Score = 25.8 bits (56), Expect = 1.1
Identities = 7/49 (14%), Positives = 18/49 (36%)
Query: 55 SGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFGGFFAPK 103
G+ + ++ + +++ +G + + Y A Q G P
Sbjct: 19 GGMYKITSDKTRNVIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPG 67
>d1y60a_ d.14.1.12 (A:) Formaldehyde-activating enzyme, FAE
{Methylobacterium extorquens [TaxId: 408]}
Length = 168
Score = 24.3 bits (53), Expect = 4.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 50 LDEPTSGLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANTVFG 97
L G +LA I N L + T++ I +ARQA +FG
Sbjct: 41 LVNNKHGFTSLLAVI---APN-LPCKPNTLMFNKVTINDARQAVQMFG 84
>d1w5sa1 a.4.5.11 (A:300-409) CDC6-like protein APE0152,
C-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Length = 110
Score = 24.0 bits (52), Expect = 4.6
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 56 GLDPVLANIFWRYLNRLSVQGQTIIITTHYIEEARQANT 94
+ P + YL L+ G ++ + T
Sbjct: 47 NVKPRGYTQYHIYLKHLTSLG---LVDAKPSGRGMRGRT 82
>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex
pyrophilus [TaxId: 2714]}
Length = 147
Score = 23.4 bits (50), Expect = 8.8
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 32 VRRVSIAVTLLHSPSLVILDEPTSGLDPVLANIFWRYLNRLSVQGQTIII-TTHY 85
+ V P L E + + YL + T+I+ THY
Sbjct: 22 LEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGKIDTLILGCTHY 76
>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 91
Score = 22.7 bits (49), Expect = 9.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 32 VRRVSIAVTLLHSPSLVILDEPTSGLDPVLA-NIFWRYLNRLSVQGQTIIIT 82
+RR+ + V H P ++ S L+ V NI +L+ + + I IT
Sbjct: 4 LRRLVLDVLKPHEPKTIVFALKLSELENVDGVNI---HLSEIDQATENIKIT 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.398
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 434,078
Number of extensions: 18251
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 33
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)