BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6945
(61 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AXU9|CNOT6_RAT CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus
GN=Cnot6 PE=2 SV=1
Length = 557
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
V+E+LSTG V ++H+DFK+L Y L N K+ TH FKL SAY +MPYT
Sbjct: 421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 480
Query: 57 NYTY 60
NYT+
Sbjct: 481 NYTF 484
>sp|Q8K3P5|CNOT6_MOUSE CCR4-NOT transcription complex subunit 6 OS=Mus musculus GN=Cnot6
PE=1 SV=2
Length = 557
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
V+E+LSTG V ++H+DFK+L Y L N K+ TH FKL SAY +MPYT
Sbjct: 421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 480
Query: 57 NYTY 60
NYT+
Sbjct: 481 NYTF 484
>sp|A2BHJ4|CNO6L_DANRE CCR4-NOT transcription complex subunit 6-like OS=Danio rerio
GN=cnot6l PE=2 SV=1
Length = 559
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
V+E+LS G V +H+DFK+L Y L N K+ THSF+L SAY ++MPYT
Sbjct: 414 VVEYLSNGGVAENHKDFKELRYSDCLTNFSCNGKNGKPDGSITHSFQLKSAYEGNLMPYT 473
Query: 57 NYTY 60
NYTY
Sbjct: 474 NYTY 477
>sp|Q5BJ41|CNOT6_XENLA CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6
PE=2 SV=1
Length = 552
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
V+E+LSTG V ++H+DFK+L Y L N K+ TH FKL SAY +MPYT
Sbjct: 416 VVEYLSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYT 475
Query: 57 NYTY 60
NYT+
Sbjct: 476 NYTF 479
>sp|Q9ULM6|CNOT6_HUMAN CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6
PE=1 SV=2
Length = 557
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPY-KSVLNKIC--QNDKSND-FTHSFKLASAYSEDIMPYT 56
V+E+LSTG V ++H+DFK+L Y +S+ N C +N +N TH FKL SAY +MPYT
Sbjct: 421 VVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGRITHGFKLQSAYESGLMPYT 480
Query: 57 NYTY 60
NYT+
Sbjct: 481 NYTF 484
>sp|Q96LI5|CNO6L_HUMAN CCR4-NOT transcription complex subunit 6-like OS=Homo sapiens
GN=CNOT6L PE=1 SV=2
Length = 555
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSND----FTHSFKLASAYSEDIMPYT 56
V+E+LS G V +H+DFK+L Y L N K+ TH F+L SAY ++MPYT
Sbjct: 419 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYT 478
Query: 57 NYTY 60
NYT+
Sbjct: 479 NYTF 482
>sp|Q5XH73|CN6LB_XENLA CCR4-NOT transcription complex subunit 6-like-B OS=Xenopus laevis
GN=cnot6l-b PE=2 SV=1
Length = 550
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
V+E+L+ G V +H+DFK+L Y L N K+ TH F+L SAY ++MPYT
Sbjct: 414 VVEYLTNGGVADNHKDFKELRYNECLTNFSCNGKNGTPDGRITHGFQLRSAYENNLMPYT 473
Query: 57 NYTY 60
NYT+
Sbjct: 474 NYTF 477
>sp|Q6IR85|CN6LA_XENLA CCR4-NOT transcription complex subunit 6-like-A OS=Xenopus laevis
GN=cnot6l-a PE=2 SV=1
Length = 550
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSN----DFTHSFKLASAYSEDIMPYT 56
V+E+L+ G V +H+DFK+L Y L N K+ TH F+L SAY ++MPYT
Sbjct: 414 VVEYLTNGGVADNHKDFKELRYNECLTNFNCNGKNGTPDGRITHGFQLRSAYENNLMPYT 473
Query: 57 NYTY 60
NYT+
Sbjct: 474 NYTF 477
>sp|Q8VEG6|CNO6L_MOUSE CCR4-NOT transcription complex subunit 6-like OS=Mus musculus
GN=Cnot6l PE=1 SV=2
Length = 555
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSND----FTHSFKLASAYSEDIMPYT 56
V+E+LS G V +H+DFK+L Y L + K+ TH F+L SAY ++MPYT
Sbjct: 419 VVEYLSNGGVADNHKDFKELRYNECLMNFSCSGKNGSSEGRITHGFQLKSAYENNLMPYT 478
Query: 57 NYTY 60
NYT+
Sbjct: 479 NYTF 482
>sp|Q4P9T3|CCR4_USTMA Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CCR4 PE=3
SV=1
Length = 670
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSE-DIMPYTNYT 59
V +FL+ G V DH+DF D Y N + HS+KL S+Y +P+TNYT
Sbjct: 534 VYDFLANGAVPGDHEDFMDHVYG--------NYTAQGLQHSYKLESSYVPIGELPFTNYT 585
>sp|O74874|CCR4_SCHPO Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ccr4 PE=3 SV=1
Length = 690
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSE-DIMPYTNYT 59
V +FLS+G ++ +H+DF + Y N +H+F L SAY E + + +TNYT
Sbjct: 567 VYDFLSSGSISQNHEDFMNNDYGEY--------TVNGRSHAFNLKSAYGESEALSFTNYT 618
>sp|A1CIJ6|CCR4_ASPCL Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=ccr4 PE=3 SV=1
Length = 667
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 4 FLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAY-SEDIMPYTNYT 59
++ GR+ +H D + Y + L+K+ TH FKL SAY S +P+TNYT
Sbjct: 547 LIAHGRLDEEHPDLEKRLYGN-LSKVG-------MTHPFKLKSAYGSIGELPFTNYT 595
>sp|Q6CJU4|CCR4_KLULA Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CCR4 PE=3
SV=1
Length = 790
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 13/62 (20%)
Query: 1 VIEFLSTGRVTSDHQDF--KDLPYKSVLNKICQNDKSNDFTHSFKLASAYSE-DIMPYTN 57
V+E ++G VT++H+D +D Y S N F+H+ L S+Y +P+TN
Sbjct: 671 VVELFNSGHVTANHKDIDQRDFGYMSQKN----------FSHNLSLRSSYGAIGELPFTN 720
Query: 58 YT 59
T
Sbjct: 721 MT 722
>sp|Q9C2R2|CCR4_NEUCR Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=ccr-4 PE=3 SV=2
Length = 793
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAY-----SEDIMPY 55
V E LS GRVT + DF Y N + H F + SAY + D + +
Sbjct: 644 VYELLSMGRVTPEQSDFGGHQYG--------NFTRDGVAHPFSMRSAYVHLNGTPDELSF 695
Query: 56 TNY 58
TNY
Sbjct: 696 TNY 698
>sp|Q4WQG5|CCR4_ASPFU Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=ccr4 PE=3 SV=1
Length = 696
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 4 FLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSE-DIMPYTNYT 59
++ GR+ +H D + Y + L+K+ TH FKL SAY +P+TNYT
Sbjct: 576 LIAHGRLDEEHPDLEKRLYGN-LSKV-------GMTHPFKLKSAYGAIGELPFTNYT 624
>sp|A1CW67|CCR4_NEOFI Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=ccr4 PE=3 SV=1
Length = 750
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 4 FLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSE-DIMPYTNYT 59
++ GR+ +H D + Y + L+K+ TH FKL SAY +P+TNYT
Sbjct: 630 LIAHGRLDEEHPDLEKRLYGN-LSKV-------GMTHPFKLKSAYGAIGELPFTNYT 678
>sp|Q19722|SYNC_CAEEL Asparagine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans
GN=nrs-1 PE=3 SV=1
Length = 545
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDI 52
+IEF++ G + + FK +PYK + + +ND N+ F Y EDI
Sbjct: 370 LIEFVNPG-YKAPARPFKRMPYKEAIEWLQKNDVRNEMGEKF----VYGEDI 416
>sp|Q0CT27|CCR4_ASPTN Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=ccr4 PE=3 SV=1
Length = 677
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 4 FLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAY-SEDIMPYTNYT 59
++ GR+T +H D + Y + L+++ TH FKL SAY S + +TNYT
Sbjct: 557 LIANGRLTEEHPDLEKRLYGN-LSRV-------GMTHPFKLKSAYGSIGELSFTNYT 605
>sp|Q2UUI3|CCR4_ASPOR Glucose-repressible alcohol dehydrogenase transcriptional effector
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=ccr4 PE=3 SV=1
Length = 746
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 4 FLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAY-SEDIMPYTNYT 59
++ GR+T +H D + Y + L+++ TH FKL SAY S + +TNYT
Sbjct: 626 LIANGRLTEEHPDLEKRLYGN-LSRV-------GMTHPFKLKSAYNSIGELSFTNYT 674
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,608,100
Number of Sequences: 539616
Number of extensions: 666176
Number of successful extensions: 1471
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 21
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)