Query psy6945
Match_columns 61
No_of_seqs 107 out of 176
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:45:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 99.6 1.1E-16 3.7E-21 114.2 0.2 60 1-60 262-325 (398)
2 4b8c_D Glucose-repressible alc 98.1 5.9E-07 2E-11 66.7 0.5 51 1-60 612-663 (727)
3 3zxy_A Subtilisin-like protein 20.6 36 0.0012 21.9 1.2 12 10-21 19-30 (282)
4 4h6w_A N-terminal cyanobactin 18.6 42 0.0015 21.6 1.2 13 10-22 32-44 (306)
5 3sui_B Transient receptor pote 17.4 46 0.0016 16.3 0.8 18 5-24 13-30 (37)
6 3vta_A Cucumisin; subtilisin-l 13.7 69 0.0024 23.4 1.3 20 10-29 33-52 (621)
7 2v3s_A Serine/threonine-protei 13.3 59 0.002 19.2 0.7 16 39-54 67-82 (96)
8 3i6s_A Subtilisin-like proteas 13.1 92 0.0031 23.1 1.8 24 5-29 31-54 (649)
9 2kzv_A Uncharacterized protein 12.3 74 0.0025 18.0 0.9 16 10-25 36-51 (92)
10 2gti_A Replicase polyprotein 1 11.0 47 0.0016 23.8 -0.3 46 2-61 56-101 (370)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.59 E-value=1.1e-16 Score=114.16 Aligned_cols=60 Identities=48% Similarity=0.898 Sum_probs=47.6
Q ss_pred CEEecccCCCCCCCccccCCCccchhhhhccCCC----CCceeccCCCccccCCCCCCceeeee
Q psy6945 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDK----SNDFTHSFKLASAYSEDIMPYTNYTY 60 (61)
Q Consensus 1 VyelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~----~~~l~H~f~L~SAY~~~~l~fTNyT~ 60 (61)
||++|++|.|+.+|+||+++.|+.++.+|+++.. ...++|||+|+|||+.++|||||||.
T Consensus 262 vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~SAy~~~~~~fTnyt~ 325 (398)
T 3ngq_A 262 VVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTF 325 (398)
T ss_dssp HHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETTTTTSSSCSEECS
T ss_pred HHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCccccccccCCCCCceeccC
Confidence 5899999999999999999999999998877532 34699999999999988999999995
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.07 E-value=5.9e-07 Score=66.73 Aligned_cols=51 Identities=33% Similarity=0.588 Sum_probs=7.0
Q ss_pred CEEecccCCCCCCCccccCCCccchhhhhccCCCCCceeccCCCccccCC-CCCCceeeee
Q psy6945 1 VIEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSE-DIMPYTNYTY 60 (61)
Q Consensus 1 VyelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~~~~l~H~f~L~SAY~~-~~l~fTNyT~ 60 (61)
||++|++|.|. +|+||....|+.+ +..+++|+++|.+||+. ++++||||+-
T Consensus 612 ~~~~l~~~~v~-~~~d~~~~~~~~~--------~~~~~~~~~~l~say~~~~~~~~T~~~~ 663 (727)
T 4b8c_D 612 VYELINTGRVQ-IHQEGNGRDFGYM--------SEKNFSHNLALKSSYNCIGELPFTNFTP 663 (727)
T ss_dssp -----------------------------------------------------CCCSBCCS
T ss_pred ceEeeecCCcC-cchhhcccccccc--------ccccccccccccchhhcCCCCccccccC
Confidence 68999999997 8999999999877 56789999999999997 6899999974
No 3
>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A
Probab=20.64 E-value=36 Score=21.86 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=9.7
Q ss_pred CCCCCccccCCC
Q psy6945 10 VTSDHQDFKDLP 21 (61)
Q Consensus 10 V~~~H~Df~~~~ 21 (61)
|..+||||+++.
T Consensus 19 id~~Hpdl~g~~ 30 (282)
T 3zxy_A 19 VDIAHPCFQGAD 30 (282)
T ss_dssp CCTTSGGGTTCE
T ss_pred CCCCChhHCCCe
Confidence 778999998654
No 4
>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}
Probab=18.65 E-value=42 Score=21.64 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=10.2
Q ss_pred CCCCCccccCCCc
Q psy6945 10 VTSDHQDFKDLPY 22 (61)
Q Consensus 10 V~~~H~Df~~~~y 22 (61)
|..+||||+++..
T Consensus 32 id~~Hpdl~g~~~ 44 (306)
T 4h6w_A 32 VDQNHPCFIGADL 44 (306)
T ss_dssp CCTTSGGGTTCEE
T ss_pred CCCCChhHcCCcc
Confidence 7789999987643
No 5
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=17.39 E-value=46 Score=16.28 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=11.8
Q ss_pred cccCCCCCCCccccCCCccc
Q psy6945 5 LSTGRVTSDHQDFKDLPYKS 24 (61)
Q Consensus 5 Ls~G~V~~~H~Df~~~~y~~ 24 (61)
|.+|+|+..| ||.+.--+
T Consensus 13 lrsgrvsgrn--wknf~lvp 30 (37)
T 3sui_B 13 LRSGRVSGRN--WKNFALVP 30 (37)
T ss_pred eecccccccc--ccccchhh
Confidence 5678888776 77554433
No 6
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=13.74 E-value=69 Score=23.38 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCCCCccccCCCccchhhhh
Q psy6945 10 VTSDHQDFKDLPYKSVLNKI 29 (61)
Q Consensus 10 V~~~H~Df~~~~y~~~l~~~ 29 (61)
|..+||||.+..+++...+|
T Consensus 33 Id~~Hp~f~d~g~~~~~~~w 52 (621)
T 3vta_A 33 IWPESPSFDDEGFSPPPPKW 52 (621)
T ss_dssp BCTTSGGGCCTTCCCCCTTC
T ss_pred CCCCChhhcCCCCCCccccc
Confidence 67899999987776554444
No 7
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=13.29 E-value=59 Score=19.17 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=11.6
Q ss_pred eccCCCccccCCCCCC
Q psy6945 39 THSFKLASAYSEDIMP 54 (61)
Q Consensus 39 ~H~f~L~SAY~~~~l~ 54 (61)
+=-|+|.|+|..++.|
T Consensus 67 svtF~L~sg~~~~e~p 82 (96)
T 2v3s_A 67 SVTFKLASGVEGSDIP 82 (96)
T ss_dssp EEEEECGGGSSSSSCC
T ss_pred EEEEEeccCCCCCCCC
Confidence 4458899999875554
No 8
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=13.10 E-value=92 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=16.6
Q ss_pred cccCCCCCCCccccCCCccchhhhh
Q psy6945 5 LSTGRVTSDHQDFKDLPYKSVLNKI 29 (61)
Q Consensus 5 Ls~G~V~~~H~Df~~~~y~~~l~~~ 29 (61)
|.+| |..+||||.+.++++.-.+|
T Consensus 31 iDTG-Id~~Hp~f~d~g~~p~p~~w 54 (649)
T 3i6s_A 31 LDSG-IWPESASFQDDGMPEIPKRW 54 (649)
T ss_dssp EESC-BCTTSGGGCCTTCCCCCTTC
T ss_pred EccC-CCCCChhhccCCCCCCcccc
Confidence 3344 77899999987766654444
No 9
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=12.29 E-value=74 Score=18.04 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=11.9
Q ss_pred CCCCCccccCCCccch
Q psy6945 10 VTSDHQDFKDLPYKSV 25 (61)
Q Consensus 10 V~~~H~Df~~~~y~~~ 25 (61)
|...+|||..+.||--
T Consensus 36 i~k~~PdFD~RnYGy~ 51 (92)
T 2kzv_A 36 LAKNDPSFDPRNWGHG 51 (92)
T ss_dssp HHHHCTTCCTTTTCSS
T ss_pred HHHhCcCCCccccCcc
Confidence 3346899999999843
No 10
>2gti_A Replicase polyprotein 1AB; MHV, NSP15, F307L, viral protein; 2.15A {Murine hepatitis virus} SCOP: c.66.1.48 d.294.1.2 PDB: 2gth_A
Probab=10.97 E-value=47 Score=23.83 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=27.5
Q ss_pred EEecccCCCCCCCccccCCCccchhhhhccCCCCCceeccCCCccccCCCCCCceeeeeC
Q psy6945 2 IEFLSTGRVTSDHQDFKDLPYKSVLNKICQNDKSNDFTHSFKLASAYSEDIMPYTNYTYV 61 (61)
Q Consensus 2 yelLs~G~V~~~H~Df~~~~y~~~l~~~~~~~~~~~l~H~f~L~SAY~~~~l~fTNyT~~ 61 (61)
+|+.++.+| +.||+.+ .|++. +...++.|-|=. |.. +-||+++|++
T Consensus 56 FELyAKR~i-~~~P~~~------iLrnL-----gV~~t~~fvlWD-ye~-~~pf~~~T~~ 101 (370)
T 2gti_A 56 VELFAKRSI-RPHPELK------LFRNL-----NIDVCWSHVLWD-YAK-DSVFCSSTYK 101 (370)
T ss_dssp HHHHHTBCC-SCBCCHH------HHHHT-----TCCEESSCBCEE-TTT-TEESSSCBSS
T ss_pred hhhhhhccc-CCCCchh------hhhcC-----CeeEEcceEEEE-ccC-CCccccccee
Confidence 355666666 5566665 33332 556677776654 554 5688888763
Done!