RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6945
         (61 letters)



>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 69

 Score = 23.9 bits (52), Expect = 0.82
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 23 KSVLNKICQNDKSNDFTHSFKLASAY 48
          K +L +I   +      ++++L   Y
Sbjct: 40 KEILKEIGVQNVKGIHKNTWELKPEY 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 213,202
Number of extensions: 6498
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)