BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6947
         (92 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing
           Protein Sgf29
          Length = 174

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 70/90 (77%)

Query: 1   KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDD 60
           K  H LSR+++IPLP  +ANPET+PEALF    +V+ALYPQTTCFY+A++++ P    DD
Sbjct: 81  KERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDD 140

Query: 61  YELLFEDNSYADNYAPPLGVPQRYVIAYKK 90
           Y +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 141 YSVLFEDTSYADGYSPPLNVAQRYVVACKE 170


>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
 pdb|3ME9|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
 pdb|3MET|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me2
 pdb|3MET|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me2
 pdb|3MEU|A Chain A, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
 pdb|3MEU|B Chain B, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
 pdb|3MEV|A Chain A, Crystal Structure Of Sgf29 In Complex With R2ak4me3
 pdb|3MEV|B Chain B, Crystal Structure Of Sgf29 In Complex With R2ak4me3
          Length = 180

 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 69/87 (79%)

Query: 4   HQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYEL 63
           H LSR+++IPLP  +ANPET+PEALF    +V+ALYPQTTCFY+A++++ P    DDY +
Sbjct: 90  HTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSV 149

Query: 64  LFEDNSYADNYAPPLGVPQRYVIAYKK 90
           LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 150 LFEDTSYADGYSPPLNVAQRYVVACKE 176


>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3
          Length = 180

 Score =  117 bits (293), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 70/90 (77%)

Query: 1   KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDD 60
           K  H LSR+++IPLP  +ANPET+PEALF    +V+ALYPQTTCFY+A++++ P    DD
Sbjct: 89  KERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDD 148

Query: 61  YELLFEDNSYADNYAPPLGVPQRYVIAYKK 90
           Y +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 149 YSVLFEDTSYADGYSPPLNVAQRYVVACKE 178


>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing Protein
           Sgf29
          Length = 159

 Score =  115 bits (289), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 68/87 (78%)

Query: 1   KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDD 60
           K  H LSR+++IPLP  +ANPET+PEALF    +V+ALYPQTTCFY+A++++ P    DD
Sbjct: 72  KERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDD 131

Query: 61  YELLFEDNSYADNYAPPLGVPQRYVIA 87
           Y +LFED SYAD Y+PPL V QRYV+A
Sbjct: 132 YSVLFEDTSYADGYSPPLNVAQRYVVA 158


>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
 pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
 pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
          Length = 522

 Score = 32.0 bits (71), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 4   HQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGT 58
           ++ +RK+++ +P         P   +P G+ V+A YP+TT FY AIV      GT
Sbjct: 439 YKCNRKELLLIPPGF------PTKNYPPGTKVLARYPETTTFYPAIVIGTKRDGT 487


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,953,777
Number of Sequences: 62578
Number of extensions: 109230
Number of successful extensions: 178
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 5
length of query: 92
length of database: 14,973,337
effective HSP length: 59
effective length of query: 33
effective length of database: 11,281,235
effective search space: 372280755
effective search space used: 372280755
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)