BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6947
(92 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C606|SGF29_RAT SAGA-associated factor 29 homolog OS=Rattus norvegicus GN=Ccdc101
PE=1 SV=1
Length = 293
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 70/90 (77%)
Query: 1 KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDD 60
K H LSR++IIPLP +ANPET+PEALF +V+ALYPQTTCFY+A++++ P DD
Sbjct: 200 KERHTLSRRRIIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHTPPQRPQDD 259
Query: 61 YELLFEDNSYADNYAPPLGVPQRYVIAYKK 90
Y +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 260 YSVLFEDTSYADGYSPPLNVAQRYVVACKE 289
>sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2
SV=1
Length = 293
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 70/90 (77%)
Query: 1 KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDD 60
K H LSR++IIPLP +ANPET+PEALF +V+ALYPQTTCFY+A++++ P DD
Sbjct: 200 KERHTLSRRRIIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHTPPQRPQDD 259
Query: 61 YELLFEDNSYADNYAPPLGVPQRYVIAYKK 90
Y +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 260 YSVLFEDTSYADGYSPPLNVAQRYVVACKE 289
>sp|Q5ZL38|SGF29_CHICK SAGA-associated factor 29 homolog OS=Gallus gallus GN=CCDC101 PE=2
SV=1
Length = 293
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 71/91 (78%)
Query: 1 KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDD 60
K H LSR+++IPLP +ANPET+PEALF +V+ALYPQTTCFY+A++++ P DD
Sbjct: 200 KERHTLSRRRVIPLPQWKANPETDPEALFQREQLVLALYPQTTCFYRALIHAPPQRPQDD 259
Query: 61 YELLFEDNSYADNYAPPLGVPQRYVIAYKKS 91
Y +LFED SYAD Y+PPL V QRYV+A K++
Sbjct: 260 YSVLFEDTSYADGYSPPLNVAQRYVVACKET 290
>sp|Q96ES7|SGF29_HUMAN SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1
SV=1
Length = 293
Score = 119 bits (298), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 1 KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDD 60
K H LSR+++IPLP +ANPET+PEALF +V+ALYPQTTCFY+A++++ P DD
Sbjct: 200 KERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDD 259
Query: 61 YELLFEDNSYADNYAPPLGVPQRYVIAYKK 90
Y +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 260 YSVLFEDTSYADGYSPPLNVAQRYVVACKE 289
>sp|A5DUP0|U507_LODEL UPF0507 protein LELG_01076 OS=Lodderomyces elongisporus (strain ATCC
11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=LELG_01076 PE=3 SV=1
Length = 1260
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 14 LPTKRANP-ETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLF 65
LPT +N ET+P+AL G ++ P + Y A +P T DD E +F
Sbjct: 1122 LPTASSNAKETDPKALLREGGNTLSRTPTNSSDYTACNFDVPNTVVDDNEGIF 1174
>sp|P25554|SGF29_YEAST SAGA-associated factor 29 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGF29 PE=1 SV=2
Length = 259
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGT 58
P +P G+ V+A YP+TT FY AIV GT
Sbjct: 191 PTKNYPPGTKVLARYPETTTFYPAIVIGTKRDGT 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,456,536
Number of Sequences: 539616
Number of extensions: 1392964
Number of successful extensions: 1939
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1934
Number of HSP's gapped (non-prelim): 7
length of query: 92
length of database: 191,569,459
effective HSP length: 62
effective length of query: 30
effective length of database: 158,113,267
effective search space: 4743398010
effective search space used: 4743398010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)