Query psy6947
Match_columns 92
No_of_seqs 104 out of 157
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:48:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07039 DUF1325: SGF29 tudor- 100.0 7.2E-38 1.6E-42 218.3 7.0 86 1-90 45-130 (130)
2 KOG3038|consensus 100.0 6.5E-35 1.4E-39 222.8 8.6 91 1-91 171-261 (264)
3 PF09465 LBR_tudor: Lamin-B re 98.3 1.6E-06 3.5E-11 53.2 4.5 42 27-69 4-45 (55)
4 cd04508 TUDOR Tudor domains ar 97.7 0.0001 2.2E-09 41.8 4.4 36 32-69 1-36 (48)
5 smart00333 TUDOR Tudor domain. 97.6 0.00016 3.6E-09 42.2 4.8 40 28-70 2-41 (57)
6 PF15057 DUF4537: Domain of un 97.1 0.0011 2.3E-08 45.9 4.9 48 32-88 1-48 (124)
7 smart00743 Agenet Tudor-like d 97.0 0.0021 4.6E-08 38.3 4.9 38 28-67 2-39 (61)
8 PF11717 Tudor-knot: RNA bindi 96.2 0.0067 1.4E-07 36.2 3.1 40 29-69 1-41 (55)
9 PF15057 DUF4537: Domain of un 96.0 0.03 6.4E-07 38.6 6.2 59 4-69 38-100 (124)
10 PF09038 53-BP1_Tudor: Tumour 95.9 0.018 3.9E-07 40.4 4.8 49 31-88 5-53 (122)
11 PF06003 SMN: Survival motor n 95.5 0.024 5.2E-07 43.6 4.6 43 25-68 65-107 (264)
12 PF08605 Rad9_Rad53_bind: Fung 92.9 0.14 3E-06 36.1 3.3 35 33-70 14-48 (131)
13 PF05641 Agenet: Agenet domain 91.5 0.38 8.3E-06 29.5 3.9 59 29-89 1-64 (68)
14 smart00293 PWWP domain with co 90.5 0.88 1.9E-05 27.5 4.7 41 29-70 1-50 (63)
15 PF00567 TUDOR: Tudor domain; 90.1 0.38 8.1E-06 30.2 3.0 42 26-69 49-90 (121)
16 cd05162 PWWP The PWWP domain, 89.9 0.84 1.8E-05 28.8 4.5 40 29-69 1-48 (87)
17 PF00855 PWWP: PWWP domain; I 88.0 1.6 3.4E-05 27.0 4.6 53 29-88 1-58 (86)
18 cd05834 HDGF_related The PWWP 85.9 2.8 6.1E-05 26.9 5.1 54 28-88 2-57 (83)
19 cd05837 MSH6_like The PWWP dom 82.5 4 8.6E-05 27.4 4.9 56 28-89 2-68 (110)
20 cd05836 N_Pac_NP60 The PWWP do 79.2 6.2 0.00013 25.4 4.7 41 29-70 1-47 (86)
21 PLN00104 MYST -like histone ac 76.2 7.9 0.00017 32.4 5.7 41 27-67 52-97 (450)
22 cd05840 SPBC215_ISWI_like The 75.4 9.5 0.0002 24.9 4.9 40 29-69 1-51 (93)
23 cd06080 MUM1_like Mutated mela 72.8 12 0.00025 24.2 4.7 40 29-70 1-40 (80)
24 cd05839 BR140_related The PWWP 68.0 12 0.00025 25.7 4.1 25 29-54 1-25 (111)
25 cd05838 WHSC1_related The PWWP 67.8 13 0.00029 24.2 4.3 52 31-89 3-63 (95)
26 PF07039 DUF1325: SGF29 tudor- 63.5 19 0.00042 24.9 4.6 57 30-90 1-60 (130)
27 COG1137 YhbG ABC-type (unclass 53.0 27 0.00059 27.1 4.2 38 28-69 26-67 (243)
28 cd05841 BS69_related The PWWP 49.1 39 0.00084 22.0 3.9 52 28-88 6-57 (83)
29 cd05835 Dnmt3b_related The PWW 47.6 56 0.0012 20.8 4.5 40 29-69 1-45 (87)
30 PF10008 DUF2251: Uncharacteri 47.3 13 0.00027 25.2 1.5 18 56-74 7-24 (97)
31 PF08169 RBB1NT: RBB1NT (NUC16 46.1 22 0.00047 24.0 2.5 48 32-86 9-63 (96)
32 PF15584 Imm44: Immunity prote 38.3 25 0.00055 23.7 1.8 19 60-78 70-88 (94)
33 PF08940 DUF1918: Domain of un 36.7 38 0.00082 20.9 2.3 23 48-70 23-46 (58)
34 PF12148 DUF3590: Protein of u 36.5 34 0.00073 22.6 2.2 38 35-73 2-44 (85)
35 cd08399 C2_PI3K_class_I_gamma 31.8 61 0.0013 23.7 3.1 38 28-65 125-171 (178)
36 PF14977 FAM194: FAM194 protei 31.5 1.2E+02 0.0025 22.9 4.7 44 26-70 8-57 (208)
37 smart00561 MBT Present in Dros 28.6 1.7E+02 0.0037 19.0 5.6 43 25-70 24-67 (96)
38 COG1945 Pyruvoyl-dependent arg 28.6 53 0.0011 24.2 2.3 34 6-40 40-73 (163)
39 PF14998 Ripply: Transcription 27.3 2.3 5E-05 28.3 -4.5 20 28-47 57-78 (87)
40 KOG3026|consensus 26.3 65 0.0014 25.3 2.6 41 28-69 90-130 (262)
41 KOG4525|consensus 26.2 52 0.0011 28.3 2.2 27 39-69 52-78 (614)
42 CHL00057 rpl14 ribosomal prote 22.8 94 0.002 21.5 2.6 26 44-69 56-83 (122)
43 PF09912 DUF2141: Uncharacteri 22.3 1.7E+02 0.0037 19.4 3.8 16 30-45 9-24 (112)
44 PF01562 Pep_M12B_propep: Repr 22.1 57 0.0012 21.5 1.4 15 41-55 76-90 (131)
45 cd08398 C2_PI3K_class_I_alpha 21.0 1.2E+02 0.0026 21.5 2.9 39 27-65 108-151 (158)
No 1
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=100.00 E-value=7.2e-38 Score=218.27 Aligned_cols=86 Identities=56% Similarity=0.931 Sum_probs=69.6
Q ss_pred CCceeecCCceeecCCCCCCCCCCCCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeee
Q psy6947 1 KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGV 80 (92)
Q Consensus 1 k~r~~~~~~~iIpLP~~~~~p~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V 80 (92)
+++|++++++|||||+ ++++.+.+.+.|++|++||||||+|||||+|+|+++|++..+.|+|+||||++++|+ +.|
T Consensus 45 ~~~~~~~~~~iIPLP~-~~~~~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~---~~V 120 (130)
T PF07039_consen 45 KKRYKLSRKQIIPLPK-KAPPDTDPLAEFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDADGY---REV 120 (130)
T ss_dssp TEEEEEEGGGEEEE-S-B--TTT-GGGS--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTSTTSB---EEE
T ss_pred CceEEeCHHHEEECCC-ccCCCCCchhhCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCc---EEE
Confidence 3589999999999997 777888899999999999999999999999999999999999999999999999998 999
Q ss_pred cCeEEEeeec
Q psy6947 81 PQRYVIAYKK 90 (92)
Q Consensus 81 ~~ryVv~~~~ 90 (92)
|+||||++++
T Consensus 121 ~~r~Vv~~p~ 130 (130)
T PF07039_consen 121 PQRYVVAFPQ 130 (130)
T ss_dssp -GGGEEE-H-
T ss_pred ccceEEccCC
Confidence 9999999985
No 2
>KOG3038|consensus
Probab=100.00 E-value=6.5e-35 Score=222.77 Aligned_cols=91 Identities=46% Similarity=0.794 Sum_probs=87.7
Q ss_pred CCceeecCCceeecCCCCCCCCCCCCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeee
Q psy6947 1 KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGV 80 (92)
Q Consensus 1 k~r~~~~~~~iIpLP~~~~~p~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V 80 (92)
|++...++++||+||.|+.+|...++++|++|++|||+||+|||||+|+||++|++++.+|.|+|+|++++||++|++.|
T Consensus 171 k~d~~g~r~~~yklp~~~~~p~p~p~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlffD~~ee~g~~pp~~V 250 (264)
T KOG3038|consen 171 KKDEVGNRGQLYKLPRWKLNPIPPPTALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFFDDEEEDGVSPPTEV 250 (264)
T ss_pred cccccccccceecccHhhcCCCCCCccCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeeecCcccccCCCCcee
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeeecC
Q psy6947 81 PQRYVIAYKKS 91 (92)
Q Consensus 81 ~~ryVv~~~~~ 91 (92)
++||||+|++.
T Consensus 251 ~~ryVva~~e~ 261 (264)
T KOG3038|consen 251 ARRYVVAFPEG 261 (264)
T ss_pred eeEEEEecCcc
Confidence 99999999985
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.28 E-value=1.6e-06 Score=53.22 Aligned_cols=42 Identities=36% Similarity=0.683 Sum_probs=30.7
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
..|+.|..|++.||++..||+|.|.+--. .++.|.|+|+|-.
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~-~~~~y~V~Y~DGt 45 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDS-KSDRYTVLYEDGT 45 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEET-TTTEEEEEETTS-
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecc-cCceEEEEEcCCC
Confidence 46899999999999999999999998532 3346999998754
No 4
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.68 E-value=0.0001 Score=41.81 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 32 GSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 32 g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
|+.|+|.|++...+|+|+|.+-.. .+.|.|.|.|-.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~--~~~~~V~f~DyG 36 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS--DGKVEVFFVDYG 36 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC--CCcEEEEEEcCC
Confidence 789999999999999999999865 455999999854
No 5
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.62 E-value=0.00016 Score=42.22 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
.+..|+.|+|.| +-..+|+|+|.+.... +.|.|.|.|...
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~--~~~~V~f~D~G~ 41 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGE--QLYEVFFIDYGN 41 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCC--CEEEEEEECCCc
Confidence 377899999999 9999999999999765 559999999653
No 6
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=97.12 E-value=0.0011 Score=45.85 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=38.9
Q ss_pred CCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 32 GSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 32 g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
|+.|||+....=-||+|+|.+.+ ..+.|.|.|++.+ ...|+.+++|.+
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~--~~~~~lV~f~~~~-------~~~v~~~~iI~~ 48 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV--SSGQFLVEFDDGD-------TQEVPISDIIAL 48 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc--CCCEEEEEECCCC-------EEEeChHHeEEc
Confidence 78999999999999999999998 4456999994332 357777777764
No 7
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.00 E-value=0.0021 Score=38.29 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEcc
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fed 67 (92)
.|.+|+.|-|++.+--++|+|+|.+-.. .+.|.|.|.+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~--~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG--DGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC--CCEEEEEECC
Confidence 4899999999999999999999998865 3459999988
No 8
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=96.18 E-value=0.0067 Score=36.20 Aligned_cols=40 Identities=20% Similarity=0.489 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCC-CCCCCeEEEEccCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPT-TGTDDYELLFEDNS 69 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~ 69 (92)
|..|++|++.+ ....+|.|+|...-. .+...|.|.|+|=+
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~n 41 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGWN 41 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTST
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCCC
Confidence 56899999999 888999999998844 34457999998754
No 9
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=96.01 E-value=0.03 Score=38.61 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=43.7
Q ss_pred eeecCCceeecCCCCCCCCCCCCCCCCCCCEEEEEcCC-CCcceeEEEecCCCC---CCCCeEEEEccCC
Q psy6947 4 HQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQ-TTCFYKAIVNSLPTT---GTDDYELLFEDNS 69 (92)
Q Consensus 4 ~~~~~~~iIpLP~~~~~p~~~~~~~f~~g~~VLAlYP~-TT~FY~A~V~~~p~~---~~~~y~l~Fedd~ 69 (92)
-.++.+.||++-... ...++.|+.|||+.+. --+|++|+|.+.|.+ ....|.|+|-|..
T Consensus 38 ~~v~~~~iI~~~~~~-------~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~ 100 (124)
T PF15057_consen 38 QEVPISDIIALSDAM-------RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK 100 (124)
T ss_pred EEeChHHeEEccCcc-------cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC
Confidence 356677888887421 3458999999999874 456889999987653 3357999998776
No 10
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=95.92 E-value=0.018 Score=40.39 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 31 IGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 31 ~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
.|-+|+|.|=+---||+++|... .+...|.|.|||-. ...|-.+-+|.+
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~--~~~~kykv~FdDG~-------~~~v~~~div~~ 53 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSD--KGKNKYKVLFDDGY-------ECRVLGKDIVVC 53 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEE--ETTTEEEEEETTS--------EEEEECCCEEEE
T ss_pred cccEEEEEEccCCcccCceEeec--CCCCeEEEEecCCc-------cceeccCcEEEE
Confidence 48999999997767799999985 34556999998764 345665555554
No 11
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=95.53 E-value=0.024 Score=43.58 Aligned_cols=43 Identities=21% Similarity=0.472 Sum_probs=30.8
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 68 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd 68 (92)
+...+.+|+.++|+|=+..++|.|+|.+--. ..+.|.|.|++=
T Consensus 65 ~~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~-~~~~~~V~f~gY 107 (264)
T PF06003_consen 65 PNKKWKVGDKCMAVYSEDGQYYPATIESIDE-EDGTCVVVFTGY 107 (264)
T ss_dssp TTT---TT-EEEEE-TTTSSEEEEEEEEEET-TTTEEEEEETTT
T ss_pred cccCCCCCCEEEEEECCCCCEEEEEEEEEcC-CCCEEEEEEccc
Confidence 3557999999999999999999999998742 234599999873
No 12
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=92.86 E-value=0.14 Score=36.06 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=26.3
Q ss_pred CEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 33 SVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 33 ~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
..|-|.| .-.||+|++.+. ...+..|.|+|||..+
T Consensus 14 ~avW~~~--~~~yYPa~~~~~-~~~~~~~~V~Fedg~~ 48 (131)
T PF08605_consen 14 NAVWAGY--NLKYYPATCVGS-GVDRDRSLVRFEDGTY 48 (131)
T ss_pred cceeecC--CCeEeeEEEEee-cCCCCeEEEEEecCce
Confidence 3456666 679999999998 3334459999999874
No 13
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=91.54 E-value=0.38 Score=29.49 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCCCCEEEEEcCC---CCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCC--CeeecCeEEEeee
Q psy6947 29 FPIGSVVMALYPQ---TTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAP--PLGVPQRYVIAYK 89 (92)
Q Consensus 29 f~~g~~VLAlYP~---TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp--~~~V~~ryVv~~~ 89 (92)
|.+|+.|=-+-=+ ..|.|+|+|.+..... .|.|+++|=.+++|..+ .-.|+.+.+=+++
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~--~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~p 64 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD--KYLVEYDDLPDEDGESPPLKEWVDARRIRPCP 64 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT---EEEEEETT-SS--------EEEEEGGGEEE--
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc--EEEEEECCcccccccccccEEEechheEECcC
Confidence 4556665444322 5789999999987665 59999988777777665 3367777655444
No 14
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=90.55 E-value=0.88 Score=27.45 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCC---------CCCCeEEEEccCCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTT---------GTDDYELLFEDNSY 70 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~---------~~~~y~l~Fedd~~ 70 (92)
|+.|+.|+|-..+= ...+|.|+..+.. ....|.|+|=|+.+
T Consensus 1 f~~GdlVwaK~~G~-p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~ 50 (63)
T smart00293 1 FKPGDLVWAKMKGF-PWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKD 50 (63)
T ss_pred CCCCCEEEEECCCC-CCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCC
Confidence 67899999998865 6899999988642 23579999988864
No 15
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=90.14 E-value=0.38 Score=30.25 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
......|..++++++.-.++|||.|... ...+.+.|.|-|..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~w~Ra~I~~~--~~~~~~~V~~iD~G 90 (121)
T PF00567_consen 49 SPESNPGEGCLCVVSEDGRWYRAVITVD--IDENQYKVFLIDYG 90 (121)
T ss_dssp CST--TTEEEEEEETTTSEEEEEEEEEE--ECTTEEEEEETTTT
T ss_pred ccccccCCEEEEEEecCCceeeEEEEEe--cccceeEEEEEecC
Confidence 3456789999999999999999999222 24446999999886
No 16
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=89.89 E-value=0.84 Score=28.77 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCC--------CCCCeEEEEccCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTT--------GTDDYELLFEDNS 69 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~--------~~~~y~l~Fedd~ 69 (92)
|+.|+.|+|-..+- .+.+|.|+.+... ..+.|.|+|=|+.
T Consensus 1 f~~GdlVwaK~~g~-pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~ 48 (87)
T cd05162 1 FRPGDLVWAKMKGY-PWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDK 48 (87)
T ss_pred CCCCCEEEEeCCCC-CCCCEEEccccccchhhhccCCCCEEEEEEeCCC
Confidence 67899999999765 7999999999753 2357999998853
No 17
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=87.99 E-value=1.6 Score=26.95 Aligned_cols=53 Identities=15% Similarity=0.078 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCC-----CCCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPT-----TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~-----~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
|..|+.|.|-..+= .+.+|.|..++. ...+.|.|.|=|+.+ .-.|+..-+..+
T Consensus 1 f~~GdlVWaK~~g~-pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~------~~wv~~~~i~~f 58 (86)
T PF00855_consen 1 FRPGDLVWAKLKGY-PWWPARVCDPDEKSKKKRKDGHVLVRFFGDND------YAWVKPSNIKPF 58 (86)
T ss_dssp -STTEEEEEEETTS-EEEEEEEEECCHCTSCSSSSTEEEEEETTTTE------EEEEEGGGEEEC
T ss_pred CCCCCEEEEEeCCC-CCCceEEeecccccccCCCCCEEEEEecCCCC------EEEECHHHhhCh
Confidence 67899999999655 699999999963 234679999988762 125555545444
No 18
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=85.92 E-value=2.8 Score=26.89 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=39.0
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCC--CCCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPT--TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~--~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
.|..|+.|+|-..+= -+.+|.|...+. .....|.|.|=|+.+ .-.|+..-+.+|
T Consensus 2 ~f~~GdlVwaK~kGy-p~WPa~I~~~~~~~~~~~~~~V~FfGt~~------~a~v~~~~l~pf 57 (83)
T cd05834 2 QFKAGDLVFAKVKGY-PAWPARVDEPEDWKPPGKKYPVYFFGTHE------TAFLKPEDLFPY 57 (83)
T ss_pred CCCCCCEEEEecCCC-CCCCEEEecccccCCCCCEEEEEEeCCCC------EeEECHHHceec
Confidence 589999999998554 688999999985 334579999988753 224555544444
No 19
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=82.47 E-value=4 Score=27.36 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=39.7
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCC-----------CCCCCeEEEEccCCCCCCCCCCeeecCeEEEeee
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPT-----------TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 89 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~-----------~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~ 89 (92)
.|+.|+.|.|-..+- .+++|.|...|. .....|.|+|=|+...- -.|+..-+++|.
T Consensus 2 ~~~~GdlVWaK~~g~-PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~-----aWv~~~~l~pf~ 68 (110)
T cd05837 2 KYQVGDLVWAKVSGY-PWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPER-----AWISEKSLKPFK 68 (110)
T ss_pred CCCCCCEEEEeCCCC-CCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCE-----EEecHHHccccC
Confidence 488999999999874 899999997554 22357999998875211 255555555544
No 20
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=79.18 E-value=6.2 Score=25.39 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=31.4
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCC------CCCCeEEEEccCCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTT------GTDDYELLFEDNSY 70 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~------~~~~y~l~Fedd~~ 70 (92)
|+.|+.|.|-... =..-+|.|..++.. ..+.|.|.|-|+.+
T Consensus 1 f~~GDlVwaK~~g-~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~ 47 (86)
T cd05836 1 LKLGDLVWAKMKG-FPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSEN 47 (86)
T ss_pred CCCCCEEEEeCCC-CCCCCEEEechhhhcccccCCCCeEEEEEeCCCC
Confidence 6789999999874 46788999987532 23569999998863
No 21
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=76.22 E-value=7.9 Score=32.45 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=33.4
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCC-----CCCCeEEEEcc
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTT-----GTDDYELLFED 67 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~-----~~~~y~l~Fed 67 (92)
..|.+|++|+|...+.-.+|.|+|+..-.. +.-.|-|.|++
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g 97 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTE 97 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEec
Confidence 459999999999998889999999988542 22358899986
No 22
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=75.40 E-value=9.5 Score=24.95 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecC-----------CCCCCCCeEEEEccCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSL-----------PTTGTDDYELLFEDNS 69 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~-----------p~~~~~~y~l~Fedd~ 69 (92)
|..|+.|+|--.+ --..+|.|+.+ ++...+.|.|+|=++.
T Consensus 1 f~~GDlVwaK~~G-yPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~ 51 (93)
T cd05840 1 FQPGDRVLAKVKG-FPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDG 51 (93)
T ss_pred CCCCCEEEEeCCC-CCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCC
Confidence 6789999998774 36789999874 2334567999988764
No 23
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=72.80 E-value=12 Score=24.23 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
|..|+.|-|-.-+= -+.+|.|.+.... ...|.|.|=||..
T Consensus 1 f~~gdlVWaK~~g~-P~WPa~I~~~~~~-~~k~~V~FfG~~~ 40 (80)
T cd06080 1 FEKNDLVWAKIQGY-PWWPAVIKSISRK-KQKARVNFIGDNM 40 (80)
T ss_pred CCCCCEEEEeCCCC-CCCCEEEeeecCC-CCEEEEEEeCCCC
Confidence 57899999987665 4669999888654 5579999988863
No 24
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=68.04 E-value=12 Score=25.73 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=19.9
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLP 54 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p 54 (92)
++.|+.|.|-- ..--+|+|.|+.++
T Consensus 1 ~~pg~lVwaK~-~g~P~wPa~iidp~ 25 (111)
T cd05839 1 LEPLTLVWAKC-RGYPSYPALIIDPK 25 (111)
T ss_pred CCCcCEeeeee-cCCCCCCeEeeCCC
Confidence 46789999987 55678999999875
No 25
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=67.77 E-value=13 Score=24.20 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCCCcceeEEEecCCC---------CCCCCeEEEEccCCCCCCCCCCeeecCeEEEeee
Q psy6947 31 IGSVVMALYPQTTCFYKAIVNSLPT---------TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 89 (92)
Q Consensus 31 ~g~~VLAlYP~TT~FY~A~V~~~p~---------~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~ 89 (92)
.|+.|.|-+.. --+.+|.|..+.. ...+.|.|.|=|+.+ .-.|..+-+.+|.
T Consensus 3 ~GdlVWaK~~g-~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~------y~Wv~~~~l~pf~ 63 (95)
T cd05838 3 YGDIVWAKLGN-FRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHD------YYWVHRGRVFPYQ 63 (95)
T ss_pred cCCEEEEECCC-CCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCC------EEEeccccccchh
Confidence 49999999988 6799999997632 123579999987753 2366666666654
No 26
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=63.54 E-value=19 Score=24.91 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=39.3
Q ss_pred CCCCEEEEEcC---CCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEeeec
Q psy6947 30 PIGSVVMALYP---QTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 90 (92)
Q Consensus 30 ~~g~~VLAlYP---~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~~ 90 (92)
++|+.|-|.-+ +...+=-|+|++--..+ ..|.|+=.|++++.+ ...++++.||+++.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~~-~rYeV~D~d~~~~~~---~~~~~~~~iIPLP~ 60 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSDG-NRYEVEDPDPEEEKK---RYKLSRKQIIPLPK 60 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEETTT-TEEEEEETTTCTTTE---EEEEEGGGEEEE-S
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeCCC-CEEEEecCCCCCCCc---eEEeCHHHEEECCC
Confidence 57999999887 46788899999875555 458887555543112 45899999999876
No 27
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=53.05 E-value=27 Score=27.15 Aligned_cols=38 Identities=32% Similarity=0.498 Sum_probs=29.9
Q ss_pred CCCCCCEEEEEcCC----CCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQ----TTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~----TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
...+|..|==|=|+ |||||-.+=...|+.+ ++.++|.+
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G----~i~ld~~d 67 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG----KILLDDED 67 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCc----eEEECCcc
Confidence 46778888888888 9999998877778766 57776654
No 28
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=49.10 E-value=39 Score=21.96 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=37.3
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
.++.|+.|.|-.-+= .+.+|.|..... ..|.|.|=|+..+ .-.|+.+-+.++
T Consensus 6 c~~p~dLVwAK~kGy-p~WPAkV~~~~~---~~~~V~FFG~t~~-----~a~v~~~~i~~~ 57 (83)
T cd05841 6 CRPPHELVWAKLKGF-PYWPAKVMRVED---NQVDVRFFGGQHD-----RAWIPSNNIQPI 57 (83)
T ss_pred cCCCCCEEEEeCCCC-CCCCEEEeecCC---CeEEEEEcCCCCC-----eEEEehHHeeeh
Confidence 478899999998775 679999998754 4599999885432 226666655554
No 29
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=47.62 E-value=56 Score=20.79 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCCC-----CCCeEEEEccCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTTG-----TDDYELLFEDNS 69 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~-----~~~y~l~Fedd~ 69 (92)
|..|+.|.|--.+= ..-+|.|+..+... .+.+.|.|=|+.
T Consensus 1 f~vGDlVWaK~kg~-pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~ 45 (87)
T cd05835 1 FNVGDLVWGKIKGF-PWWPGRVVSITVTSKRPPVVGMRWVTWFGSG 45 (87)
T ss_pred CCCCCEEEEecCCC-CCCCeEEechhhcccccCCCCeEEEEEeCCC
Confidence 56799999986544 58899999886532 356999998864
No 30
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.25 E-value=13 Score=25.24 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=13.7
Q ss_pred CCCCCeEEEEccCCCCCCC
Q psy6947 56 TGTDDYELLFEDNSYADNY 74 (92)
Q Consensus 56 ~~~~~y~l~Fedd~~~~G~ 74 (92)
+..+.|.+-||||. +.||
T Consensus 7 ~~~~~~~vVFEDdG-eTGY 24 (97)
T PF10008_consen 7 TPHGPYAVVFEDDG-ETGY 24 (97)
T ss_pred cCCCCEEEEEEeCC-CcEE
Confidence 34556999999998 4676
No 31
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=46.11 E-value=22 Score=23.95 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCEEEE-EcCCCCcceeEEEecCCCC-----CCCCeEEE-EccCCCCCCCCCCeeecCeEEE
Q psy6947 32 GSVVMA-LYPQTTCFYKAIVNSLPTT-----GTDDYELL-FEDNSYADNYAPPLGVPQRYVI 86 (92)
Q Consensus 32 g~~VLA-lYP~TT~FY~A~V~~~p~~-----~~~~y~l~-Fedd~~~~G~sp~~~V~~ryVv 86 (92)
|..|.= .=..-+++|+|.|++|--. +.+.|.|+ |-|.- -..|+++-+-
T Consensus 9 GkVV~V~~~~~k~~W~PALVVsPsc~ddv~VkKD~~lVRSFkD~K-------fysV~rkd~~ 63 (96)
T PF08169_consen 9 GKVVCVESTKKKTSWFPALVVSPSCNDDVTVKKDQCLVRSFKDGK-------FYSVARKDVR 63 (96)
T ss_dssp TSEEEEE-SS-SS-EEEEEEE--SS-SS----TT-EEEEESSS---------EEEE-TTTEE
T ss_pred CcEEEEEcCCCCCceeeEEEEcCCccceeeeccceEEEEEeccCc-------eEEEEhhhhh
Confidence 555443 1122468999999997432 34567777 65532 2356655443
No 32
>PF15584 Imm44: Immunity protein 44
Probab=38.32 E-value=25 Score=23.69 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=16.6
Q ss_pred CeEEEEccCCCCCCCCCCe
Q psy6947 60 DYELLFEDNSYADNYAPPL 78 (92)
Q Consensus 60 ~y~l~Fedd~~~~G~sp~~ 78 (92)
..+|.+||+-|+||..|.-
T Consensus 70 ~WRLiWeD~RY~DGtIP~E 88 (94)
T PF15584_consen 70 RWRLIWEDKRYEDGTIPDE 88 (94)
T ss_pred EEEEEEecccccCCCCCcc
Confidence 6899999999999987754
No 33
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=36.72 E-value=38 Score=20.92 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=12.9
Q ss_pred EEEecCC-CCCCCCeEEEEccCCC
Q psy6947 48 AIVNSLP-TTGTDDYELLFEDNSY 70 (92)
Q Consensus 48 A~V~~~p-~~~~~~y~l~Fedd~~ 70 (92)
|+|...- ..+..-|.|+|+|+..
T Consensus 23 GeIveV~g~dG~PPY~VRw~D~Gh 46 (58)
T PF08940_consen 23 GEIVEVRGPDGSPPYLVRWDDTGH 46 (58)
T ss_dssp EEEEE-S-SSS-S-EEEEETTTTE
T ss_pred eEEEEEECCCCCCCEEEEecCCCc
Confidence 4444432 2455679999999764
No 34
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=36.47 E-value=34 Score=22.56 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=25.2
Q ss_pred EEEEcCCCCcceeEEEecCCCCC-----CCCeEEEEccCCCCCC
Q psy6947 35 VMALYPQTTCFYKAIVNSLPTTG-----TDDYELLFEDNSYADN 73 (92)
Q Consensus 35 VLAlYP~TT~FY~A~V~~~p~~~-----~~~y~l~Fedd~~~~G 73 (92)
|=|+-..+.+.+-|.|+..-++. .-.|.++|||.. ++|
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddyp-e~g 44 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYP-ENG 44 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-G-GG-
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCC-CcC
Confidence 45777888899999998775543 236999999887 455
No 35
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=31.78 E-value=61 Score=23.66 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEcCCC------Cccee--EEEecCCCCCC-CCeEEEE
Q psy6947 28 LFPIGSVVMALYPQT------TCFYK--AIVNSLPTTGT-DDYELLF 65 (92)
Q Consensus 28 ~f~~g~~VLAlYP~T------T~FY~--A~V~~~p~~~~-~~y~l~F 65 (92)
.+..|...|.+||.- -.|++ ++|...|.... -...|+|
T Consensus 125 ~Lr~G~~~L~~W~~~~~~~~~~~~np~~gt~~~NP~~~~~~~l~~~f 171 (178)
T cd08399 125 LLRTGEYVLHMWQISGKGEDQGSVNADKLTSATNPDKENSMSISILL 171 (178)
T ss_pred ceecCCEEEEEecCCCcccccceeCCcccccccCCCCCCceEEEEEe
Confidence 589999999999954 46888 89999998764 3577888
No 36
>PF14977 FAM194: FAM194 protein
Probab=31.52 E-value=1.2e+02 Score=22.93 Aligned_cols=44 Identities=25% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCCCCCCCEEEEEcCCCC--ccee----EEEecCCCCCCCCeEEEEccCCC
Q psy6947 26 EALFPIGSVVMALYPQTT--CFYK----AIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT--~FY~----A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
...|+.|...+-++||=| .||+ |+.+.+...+ +.+.+-|||.+.
T Consensus 8 ~~~Y~~g~~f~~~f~DGsg~i~YPSGnlAi~~~~~~~~-~~~~~v~eD~~~ 57 (208)
T PF14977_consen 8 EKYYKNGRKFHYMFPDGSGQIFYPSGNLAICISPTCRG-GFTYIVYEDSPE 57 (208)
T ss_pred heeCCCCcEEEEEcCCCCEEEEeCCCCEEEEEeccCCC-ceEEEEEecCCC
Confidence 456899999999999955 4676 7777776433 367778888863
No 37
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=28.64 E-value=1.7e+02 Score=19.03 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=33.2
Q ss_pred CCCCCCCCCEEEEEcCCCC-cceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 25 PEALFPIGSVVMALYPQTT-CFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT-~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
....|+.|.++=|+=|.-. ....|+|...- + +...|.|||-++
T Consensus 24 ~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~--g-~~l~v~~dg~~~ 67 (96)
T smart00561 24 PPNGFKVGMKLEAVDPRNPSLICVATVVEVK--G-YRLLLHFDGWDD 67 (96)
T ss_pred ccCcccCCCEEEEECCCCCceEEEEEEEEEE--C-CEEEEEEccCCC
Confidence 4557999999999988854 46689998774 2 258999998764
No 38
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=28.58 E-value=53 Score=24.16 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=21.2
Q ss_pred ecCCceeecCCCCCCCCCCCCCCCCCCCEEEEEcC
Q psy6947 6 LSRKQIIPLPTKRANPETEPEALFPIGSVVMALYP 40 (92)
Q Consensus 6 ~~~~~iIpLP~~~~~p~~~~~~~f~~g~~VLAlYP 40 (92)
++-+.||| |...--...+....|+.|++|-.++=
T Consensus 40 V~vSSIlP-p~~~~V~~e~gl~kl~pG~iv~~V~A 73 (163)
T COG1945 40 VPVSSILP-PNCEIVDPEDGLPKLPPGAILFCVMA 73 (163)
T ss_pred EEEecccC-CcccccchhhcCCcCCCCcEEeEEEe
Confidence 34577888 64332222334666999999877664
No 39
>PF14998 Ripply: Transcription Regulator
Probab=27.33 E-value=2.3 Score=28.29 Aligned_cols=20 Identities=35% Similarity=0.728 Sum_probs=15.7
Q ss_pred CCCCCCEEEEEcCC--CCccee
Q psy6947 28 LFPIGSVVMALYPQ--TTCFYK 47 (92)
Q Consensus 28 ~f~~g~~VLAlYP~--TT~FY~ 47 (92)
+++.|..||+=||= |-|||-
T Consensus 57 Ly~~gE~lL~nFPVQATI~fY~ 78 (87)
T PF14998_consen 57 LYSEGEKLLANFPVQATIHFYE 78 (87)
T ss_pred HHHHHHHHHHcCCceeEEEecc
Confidence 46778889999995 778874
No 40
>KOG3026|consensus
Probab=26.30 E-value=65 Score=25.32 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
.|++|++|.|.|++---.|-|+|..--. ..+...+.|+...
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita-~~~~~ai~f~s~~ 130 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITA-MEGTVAIIFASYG 130 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccC-CCCceeEEEeecc
Confidence 5999999999999988999999876533 1234677787554
No 41
>KOG4525|consensus
Probab=26.20 E-value=52 Score=28.34 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.6
Q ss_pred cCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 39 YPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 39 YP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
||.+-.|++|++++.|. +.+|.|+-|+
T Consensus 52 ~p~h~~~fkat~~~~pG----enkllF~td~ 78 (614)
T KOG4525|consen 52 LPEHLSQFKATQLSAPG----ENKLLFDTDQ 78 (614)
T ss_pred chhhhhhhheeEEecCC----cceEEEEcCC
Confidence 69999999999999884 3589998664
No 42
>CHL00057 rpl14 ribosomal protein L14
Probab=22.77 E-value=94 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=18.4
Q ss_pred cceeEEEecCCC--CCCCCeEEEEccCC
Q psy6947 44 CFYKAIVNSLPT--TGTDDYELLFEDNS 69 (92)
Q Consensus 44 ~FY~A~V~~~p~--~~~~~y~l~Fedd~ 69 (92)
-=++|+|+..-. ...+-..++|||+.
T Consensus 56 ~v~kAvIVrtk~~~~r~dG~~i~F~~Na 83 (122)
T CHL00057 56 EVVRAVIVRTCKELKRDNGMIIRFDDNA 83 (122)
T ss_pred CEEEEEEEEeccccCcCCCcEEEcCCce
Confidence 346899998854 23345789999876
No 43
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=22.29 E-value=1.7e+02 Score=19.35 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=13.7
Q ss_pred CCCCEEEEEcCCCCcc
Q psy6947 30 PIGSVVMALYPQTTCF 45 (92)
Q Consensus 30 ~~g~~VLAlYP~TT~F 45 (92)
.+|...+|||.+-..|
T Consensus 9 ~~G~v~v~ly~~~~~f 24 (112)
T PF09912_consen 9 DKGQVRVALYNSAEGF 24 (112)
T ss_pred CCcEEEEEEEcChhch
Confidence 3699999999997777
No 44
>PF01562 Pep_M12B_propep: Reprolysin family propeptide; InterPro: IPR002870 This signature covers the region of the propeptide for members of the MEROPS peptidase family M12B (clan MA(M), adamalysin family). The propeptide contains a sequence motif similar to the "cysteine switch" of the matrixins, which mediate cell-cell or cell-matrix interactions.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis
Probab=22.06 E-value=57 Score=21.48 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=13.3
Q ss_pred CCCcceeEEEecCCC
Q psy6947 41 QTTCFYKAIVNSLPT 55 (92)
Q Consensus 41 ~TT~FY~A~V~~~p~ 55 (92)
+..|||.+.|.+.|.
T Consensus 76 ~~~c~Y~G~V~g~~~ 90 (131)
T PF01562_consen 76 QEHCHYQGHVEGDPG 90 (131)
T ss_pred ccceEEEeeeCCCCC
Confidence 488999999999886
No 45
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=20.95 E-value=1.2e+02 Score=21.52 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=23.1
Q ss_pred CCCCCCCEEEEEcCCCC----ccee-EEEecCCCCCCCCeEEEE
Q psy6947 27 ALFPIGSVVMALYPQTT----CFYK-AIVNSLPTTGTDDYELLF 65 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT----~FY~-A~V~~~p~~~~~~y~l~F 65 (92)
..+..|...|.|||... -|++ +++...|...+-...++|
T Consensus 108 ~~Lr~G~~~L~lW~~~~~~~~~~np~g~~~~Np~~~~~~l~~~f 151 (158)
T cd08398 108 DTLVSGKMALNLWPVPHGLEDLLNPIGVTGSNPNKDTPCLELEF 151 (158)
T ss_pred ChhhCCCEEEEEEcCCcCchhhcCCcCcCcCCCCCCceEEEEEE
Confidence 35889999999999532 2333 445555655442334444
Done!