Query psy6947
Match_columns 92
No_of_seqs 104 out of 157
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:48:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mea_A SAGA-associated factor 100.0 4.5E-43 1.5E-47 255.4 9.8 91 1-91 89-179 (180)
2 3mp6_A MBP, SGF29, maltose-bin 100.0 1.4E-29 4.9E-34 199.9 7.9 78 2-90 437-514 (522)
3 2l8d_A Lamin-B receptor; DNA b 98.4 4.4E-07 1.5E-11 56.5 4.3 45 25-70 6-50 (66)
4 2dig_A Lamin-B receptor; tudor 98.3 5.5E-07 1.9E-11 56.4 3.8 46 24-70 8-53 (68)
5 2g3r_A Tumor suppressor P53-bi 97.9 9.2E-06 3.2E-10 55.9 3.9 49 30-87 6-54 (123)
6 1mhn_A SurviVal motor neuron p 97.8 3.6E-05 1.2E-09 45.7 5.0 40 28-68 3-42 (59)
7 2equ_A PHD finger protein 20-l 97.8 6.5E-05 2.2E-09 47.2 6.0 40 26-68 7-46 (74)
8 3p8d_A Medulloblastoma antigen 97.8 4E-05 1.4E-09 47.7 4.9 38 27-67 5-42 (67)
9 3qii_A PHD finger protein 20; 97.7 4.1E-05 1.4E-09 49.7 4.8 39 26-67 19-57 (85)
10 2e5q_A PHD finger protein 19; 97.6 0.00023 7.8E-09 43.9 6.3 43 25-69 4-46 (63)
11 4hcz_A PHD finger protein 1; p 97.5 0.00019 6.6E-09 43.6 5.0 40 28-69 3-42 (58)
12 3s6w_A Tudor domain-containing 97.5 0.00024 8.1E-09 41.2 5.0 40 29-69 2-41 (54)
13 4a4f_A SurviVal of motor neuro 97.4 0.00028 9.6E-09 42.5 5.2 44 25-69 5-48 (64)
14 2eqj_A Metal-response element- 97.4 0.00026 8.9E-09 44.0 5.1 43 25-69 10-52 (66)
15 2e5p_A Protein PHF1, PHD finge 97.4 0.00027 9.3E-09 44.1 5.2 43 25-69 6-48 (68)
16 2xk0_A Polycomb protein PCL; t 97.4 0.00059 2E-08 42.7 6.4 41 25-69 12-52 (69)
17 2m0o_A PHD finger protein 1; t 97.3 0.00037 1.3E-08 44.6 5.1 46 22-69 20-65 (79)
18 2ldm_A Uncharacterized protein 96.3 4.7E-05 1.6E-09 48.9 0.0 38 27-67 5-42 (81)
19 1g5v_A SurviVal motor neuron p 97.2 0.00047 1.6E-08 44.5 4.8 42 26-68 8-49 (88)
20 2d9t_A Tudor domain-containing 97.2 0.0012 4E-08 41.3 5.9 44 25-69 6-49 (78)
21 3dlm_A Histone-lysine N-methyl 97.1 0.00082 2.8E-08 49.8 5.5 43 26-68 66-111 (213)
22 1ssf_A Transformation related 97.0 0.0011 3.9E-08 47.0 5.4 39 29-69 9-47 (156)
23 2fhd_A RAD9 homolog, DNA repai 97.0 0.00075 2.6E-08 47.8 4.1 38 32-69 9-50 (153)
24 3pnw_C Tudor domain-containing 96.9 0.0016 5.4E-08 40.7 4.9 42 27-69 16-57 (77)
25 3fdr_A Tudor and KH domain-con 96.6 0.0035 1.2E-07 39.5 5.0 41 27-69 26-66 (94)
26 2diq_A Tudor and KH domain-con 96.3 0.0073 2.5E-07 39.1 5.3 40 28-69 32-71 (110)
27 3ntk_A Maternal protein tudor; 95.4 0.027 9.3E-07 38.8 5.3 40 28-69 47-86 (169)
28 3sd4_A PHD finger protein 20; 94.8 0.098 3.4E-06 31.5 5.8 43 25-69 9-51 (69)
29 2eko_A Histone acetyltransfera 94.7 0.047 1.6E-06 35.0 4.4 45 25-69 6-54 (87)
30 2lcc_A AT-rich interactive dom 94.3 0.026 8.8E-07 35.2 2.5 42 27-68 4-48 (76)
31 2wac_A CG7008-PA; unknown func 94.2 0.071 2.4E-06 37.0 4.8 40 28-70 51-90 (218)
32 4b9w_A TDRD1, tudor domain-con 94.0 0.089 3E-06 36.9 5.0 40 28-69 65-104 (201)
33 3m9q_A Protein MALE-specific l 93.9 0.063 2.2E-06 35.4 3.8 59 26-88 17-84 (101)
34 3oa6_A MALE-specific lethal 3 93.7 0.066 2.3E-06 35.9 3.8 61 24-88 15-84 (110)
35 2f5k_A MORF-related gene 15 is 93.5 0.08 2.7E-06 34.9 3.8 42 25-68 19-61 (102)
36 2qqr_A JMJC domain-containing 93.4 0.07 2.4E-06 36.1 3.4 41 27-70 4-44 (118)
37 4b9x_A TDRD1, tudor domain-con 93.1 0.1 3.5E-06 37.3 4.1 40 28-69 65-104 (226)
38 2lrq_A Protein MRG15, NUA4 com 91.3 0.027 9.4E-07 35.8 0.0 42 25-68 9-51 (85)
39 1wgs_A MYST histone acetyltran 91.5 0.18 6.3E-06 34.2 3.7 41 26-67 10-53 (133)
40 2ro0_A Histone acetyltransfera 91.4 0.46 1.6E-05 30.6 5.3 42 26-69 21-63 (92)
41 2xdp_A Lysine-specific demethy 91.2 0.041 1.4E-06 37.5 0.1 42 26-70 4-45 (123)
42 2hqx_A P100 CO-activator tudor 90.3 0.43 1.5E-05 34.0 4.8 39 28-69 65-103 (246)
43 2rnz_A Histone acetyltransfera 90.3 0.51 1.7E-05 30.6 4.7 43 25-69 22-65 (94)
44 3m9p_A MALE-specific lethal 3 89.9 0.3 1E-05 32.7 3.5 59 26-88 17-84 (110)
45 3dlm_A Histone-lysine N-methyl 89.8 0.29 1E-05 36.1 3.7 42 27-69 7-49 (213)
46 2eqm_A PHD finger protein 20-l 89.1 1.3 4.5E-05 28.0 5.9 45 23-69 14-58 (88)
47 1ri0_A Hepatoma-derived growth 85.5 3.5 0.00012 26.7 6.5 46 23-69 14-63 (110)
48 3bdl_A Staphylococcal nuclease 83.5 1.1 3.6E-05 36.1 4.0 40 28-70 411-450 (570)
49 2eqk_A Tudor domain-containing 81.6 3.6 0.00012 26.2 5.2 42 26-69 19-60 (85)
50 4fu6_A PC4 and SFRS1-interacti 79.1 5.5 0.00019 26.8 5.9 55 27-88 21-79 (153)
51 2gfu_A DNA mismatch repair pro 75.2 11 0.00038 24.8 6.4 59 26-90 20-86 (134)
52 2yrv_A AT-rich interactive dom 74.9 4.6 0.00016 27.2 4.4 49 32-88 14-70 (117)
53 3l42_A Peregrin; transcription 74.2 13 0.00044 25.2 6.6 56 27-89 4-89 (130)
54 1h3z_A Hypothetical 62.8 kDa p 73.8 12 0.0004 23.8 6.0 56 26-88 4-70 (109)
55 3e9g_A Chromatin modification- 72.0 9.6 0.00033 26.1 5.5 25 27-53 6-30 (130)
56 3ask_A E3 ubiquitin-protein li 71.4 4.9 0.00017 29.6 4.2 42 28-69 2-51 (226)
57 3qby_A Hepatoma-derived growth 69.5 16 0.00055 22.8 5.9 54 28-88 5-62 (94)
58 2qqr_A JMJC domain-containing 69.3 4.3 0.00015 27.2 3.2 51 29-89 64-114 (118)
59 2daq_A WHSC1L1 protein, isofor 68.3 8.8 0.0003 24.3 4.5 43 26-69 6-57 (110)
60 2w4y_A Caulobacter 5 virus-lik 68.0 5.7 0.0002 26.2 3.5 51 38-89 33-89 (122)
61 3pfs_A Bromodomain and PHD fin 66.1 31 0.001 24.1 7.5 58 26-89 34-120 (158)
62 3llr_A DNA (cytosine-5)-methyl 63.2 26 0.00089 24.1 6.4 58 25-89 13-75 (154)
63 1khc_A DNA cytosine-5 methyltr 62.2 20 0.0007 24.2 5.6 44 25-69 8-56 (147)
64 2xdp_A Lysine-specific demethy 57.7 6.8 0.00023 26.4 2.5 39 28-69 64-102 (123)
65 3h8z_A FragIle X mental retard 56.4 22 0.00075 23.8 4.9 39 26-67 58-100 (128)
66 1wjq_A KIAA1798 protein; MBT d 52.9 29 0.00098 22.6 4.9 43 26-71 11-54 (107)
67 2k3y_A Chromatin modification- 51.9 14 0.00046 25.3 3.3 27 26-54 7-33 (136)
68 3mea_A SAGA-associated factor 49.4 59 0.002 23.0 6.4 59 27-90 43-104 (180)
69 1ssf_A Transformation related 48.0 8.5 0.00029 27.1 1.8 50 28-87 61-112 (156)
70 2bud_A Males-absent on the fir 40.9 30 0.001 22.1 3.5 38 31-69 17-58 (92)
71 3db3_A E3 ubiquitin-protein li 40.6 30 0.001 24.3 3.7 47 26-73 8-71 (161)
72 2biv_A SCML2 protein, sex COMB 39.5 49 0.0017 24.1 4.9 43 25-70 59-102 (243)
73 3mp6_A MBP, SGF29, maltose-bin 37.6 63 0.0022 24.8 5.5 63 26-90 385-451 (522)
74 2l89_A PWWP domain-containing 33.2 46 0.0016 21.0 3.5 56 27-89 4-68 (108)
75 1wjr_A KIAA1617 protein; MBT d 32.4 48 0.0016 21.9 3.5 44 26-72 9-53 (127)
76 2r58_A Polycomb protein SCM; M 31.5 79 0.0027 23.4 5.0 42 26-70 32-74 (265)
77 2biv_A SCML2 protein, sex COMB 28.9 1.3E+02 0.0044 21.8 5.7 43 25-70 168-211 (243)
78 3qr8_A GPV, baseplate assembly 21.2 1.1E+02 0.0039 21.1 4.0 42 28-69 60-108 (211)
79 4dxt_A SUN domain-containing p 20.5 28 0.00096 24.6 0.6 15 40-54 182-196 (198)
No 1
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=100.00 E-value=4.5e-43 Score=255.39 Aligned_cols=91 Identities=59% Similarity=1.062 Sum_probs=85.6
Q ss_pred CCceeecCCceeecCCCCCCCCCCCCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeee
Q psy6947 1 KGPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGV 80 (92)
Q Consensus 1 k~r~~~~~~~iIpLP~~~~~p~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V 80 (92)
|+||++++++|||||+|+++|++++.++|++|++||||||||||||+|+|+++|++.+++|+|+||||+|+||++|+++|
T Consensus 89 ~~~~~~s~~~IIPLP~~~a~p~t~~~~~f~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde~~dG~sp~~~V 168 (180)
T 3mea_A 89 KERHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNV 168 (180)
T ss_dssp CEEEEEEGGGEEECCSBBCCTTTCGGGSCCTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTTSTTSBCCCEEE
T ss_pred ceeEEeCHHHEEECCCcCCCcccCccccCCCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCCccCCCCCCcEe
Confidence 46899999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred cCeEEEeeecC
Q psy6947 81 PQRYVIAYKKS 91 (92)
Q Consensus 81 ~~ryVv~~~~~ 91 (92)
+|||||+|||.
T Consensus 169 ~~RyVv~~ke~ 179 (180)
T 3mea_A 169 AQRYVVACKEP 179 (180)
T ss_dssp CGGGEEEC---
T ss_pred cceEEEccCCC
Confidence 99999999985
No 2
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.96 E-value=1.4e-29 Score=199.92 Aligned_cols=78 Identities=29% Similarity=0.468 Sum_probs=67.3
Q ss_pred CceeecCCceeecCCCCCCCCCCCCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeec
Q psy6947 2 GPHQLSRKQIIPLPTKRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVP 81 (92)
Q Consensus 2 ~r~~~~~~~iIpLP~~~~~p~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~ 81 (92)
+||++|+++|||||. +++.++|++|++||||||||||||+|+|+++|.++ +|+|+||||++. ++++.|+
T Consensus 437 ~~~~~~~~~~~~~p~------~~~~~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~~--~~~~~f~~~~~~---~~~~~~~ 505 (522)
T 3mp6_A 437 KVYKCNRKELLLIPP------GFPTKNYPPGTKVLARYPETTTFYPAIVIGTKRDG--TCRLRFDGEEEV---DKETEVT 505 (522)
T ss_dssp EEEEECGGGEEEECS------SCCCCCCCTTCEEEEECTTCSEEEEEEEEEECTTS--CEEEEETTC-------CCEEEC
T ss_pred eeEEccHHHEEECCC------CCcccCCCCCCEEEEECCCCcceEeEEEecCCCCC--eEEEEecCCCCC---Ccccccc
Confidence 589999999999994 44578899999999999999999999999988764 699999999764 4688999
Q ss_pred CeEEEeeec
Q psy6947 82 QRYVIAYKK 90 (92)
Q Consensus 82 ~ryVv~~~~ 90 (92)
+||||++++
T Consensus 506 ~~~v~~~~~ 514 (522)
T 3mp6_A 506 RRLVLPSPT 514 (522)
T ss_dssp GGGEEECHH
T ss_pred ceeEEecCc
Confidence 999999875
No 3
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=98.36 E-value=4.4e-07 Score=56.55 Aligned_cols=45 Identities=24% Similarity=0.505 Sum_probs=38.5
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
+...|+.|+.|||.||+...||+|.|.+-- .....|.|+|-|+..
T Consensus 6 p~~~~~vgd~VmaRW~Gd~~yYparI~Si~-s~~~~Y~V~fKdgT~ 50 (66)
T 2l8d_A 6 PNRKYADGEVVMGRWPGSVLYYEVQVTSYD-DASHLYTVKYKDGTE 50 (66)
T ss_dssp SSSSSCSSCEEEEECTTSSCEEEEEEEEEE-TTTTEEEEEETTSCE
T ss_pred CceEeecCCEEEEEcCCCccceEEEEEEec-cCCceEEEEecCCCE
Confidence 355799999999999999999999999987 445689999998543
No 4
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.30 E-value=5.5e-07 Score=56.35 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=39.2
Q ss_pred CCCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 24 EPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 24 ~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
-+...|+.|+.|||.||+...||+|.|.+-- .....|.|+|-|+..
T Consensus 8 mp~~~f~vgd~VmaRW~Gd~~yYparItSit-s~~~~Y~VkfKdgT~ 53 (68)
T 2dig_A 8 MPSRKFADGEVVRGRWPGSSLYYEVEILSHD-STSQLYTVKYKDGTE 53 (68)
T ss_dssp SCCCSSCSSCEEEEECTTTCCEEEEEEEEEE-TTTTEEEEECTTSCE
T ss_pred CCceEeecCCEEEEEccCCccceEEEEEEec-cCCceEEEEecCCCE
Confidence 3566799999999999999999999999886 445689999998543
No 5
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=97.90 E-value=9.2e-06 Score=55.90 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=41.1
Q ss_pred CCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEe
Q psy6947 30 PIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIA 87 (92)
Q Consensus 30 ~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~ 87 (92)
..|.+|||+|.+-.-||+++|.+. .+.+.|+|+|||.. .+.|..++||.
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~--~~~~ky~V~FdDg~-------~~~v~~k~iiv 54 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRD--VGAGKYKLLFDDGY-------ECDVLGKDILL 54 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEE--EETTEEEEEETTSC-------EEEEEGGGEEC
T ss_pred ccceEEEEEeccCCcCcccEEEEe--ccCCeEEEEEcCCC-------eeEeecceEEE
Confidence 359999999999989999999875 45556999999886 57788888884
No 6
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.81 E-value=3.6e-05 Score=45.69 Aligned_cols=40 Identities=15% Similarity=0.430 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 68 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd 68 (92)
.+++|+.|||+|.+--.||+|+|.+... ..+.|.|.|.|=
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~-~~~~~~V~f~DY 42 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDF-KRETCVVVYTGY 42 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEET-TTTEEEEEETTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcC-CCCEEEEEEEcC
Confidence 4889999999999778999999998733 235699999763
No 7
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=6.5e-05 Score=47.19 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 68 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd 68 (92)
...+++|+.|||+|. --.||+|+|.+-... +.|.|.|+|=
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~--~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINKE--GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEESTT--SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECCC--CEEEEEEecC
Confidence 457999999999999 569999999988644 4699999864
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.77 E-value=4e-05 Score=47.66 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=32.8
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEcc
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fed 67 (92)
+.|..|+.|||.| .=-.||+|+|.+--.. +.|.|+|.|
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~~--~~Y~V~F~d 42 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNKD--GTYTVKFYD 42 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECTT--SEEEEEETT
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECCC--CeEEEEEeC
Confidence 4699999999999 7778999999988655 459999987
No 9
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.74 E-value=4.1e-05 Score=49.70 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=32.5
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEcc
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fed 67 (92)
...|..|+.|||.| .=--||+|+|.+--.. +.|.|+|.|
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~--~~YtV~F~D 57 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNKD--GTYTVKFYD 57 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECTT--SEEEEEETT
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECCC--CeEEEEEeC
Confidence 46799999999999 7778999999987655 459999987
No 10
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=0.00023 Score=43.88 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=36.3
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
....|..|+.|||.+=|= -||.|+|...-... ..|.|+|||++
T Consensus 4 g~~~f~eGqdVLarWsDG-lfYlgtV~kV~~~~-~~ClV~FeD~s 46 (63)
T 2e5q_A 4 GSSGLTEGQYVLCRWTDG-LYYLGKIKRVSSSK-QSCLVTFEDNS 46 (63)
T ss_dssp SCCCCCTTCEEEEECTTS-CEEEEEECCCCSTT-SEEEEEETTSC
T ss_pred CccceecCCEEEEEecCC-CEEEEEEEEEecCC-CEEEEEEccCc
Confidence 356799999999999887 89999999886543 35999999987
No 11
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=97.49 E-value=0.00019 Score=43.59 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=33.8
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
.|..|+.|||.+=+ --||.|+|.+..+.. +.|.|+|+|.+
T Consensus 3 ~f~~GedVLarwsD-G~fYlGtI~~V~~~~-~~clV~F~D~s 42 (58)
T 4hcz_A 3 RLWEGQDVLARWTD-GLLYLGTIKKVDSAR-EVCLVQFEDDS 42 (58)
T ss_dssp SCCTTCEEEEECTT-SCEEEEEEEEEETTT-TEEEEEETTSC
T ss_pred ccccCCEEEEEecC-CCEEeEEEEEEecCC-CEEEEEEcCCC
Confidence 48899999999999 589999999875433 35999999987
No 12
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.47 E-value=0.00024 Score=41.22 Aligned_cols=40 Identities=28% Similarity=0.366 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
+++|+.++|.|.+=-.+|+|+|.+-... .+.+.|.|.|=.
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~-~~~~~V~fvDYG 41 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSS-GMTAVVKFIDYG 41 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--C-CSEEEEEETTTC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCC-CCEEEEEEEccC
Confidence 6899999999987779999999987532 246999998754
No 13
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=97.44 E-value=0.00028 Score=42.48 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=35.4
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
+...+++|+.|||+|-+=-.||+|+|.+.... .+.|.|.|.|=.
T Consensus 5 ~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~-~~~~~V~fvdYG 48 (64)
T 4a4f_A 5 PTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEE-NGTAAITFAGYG 48 (64)
T ss_dssp CSSCCCTTCEEEEECTTTSSEEEEEEEEEETT-TTEEEEEETTTT
T ss_pred cCCCCCCCCEEEEEECCCCCEEEEEEEEEcCC-CCEEEEEEEecC
Confidence 34579999999999987779999999987532 235999998753
No 14
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=97.43 E-value=0.00026 Score=44.02 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=34.4
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
+...|..|+.|||.|=| =-||.|+|.+-.+. ++.|.|+|+|..
T Consensus 10 ~~~~f~vGddVLA~wtD-Gl~Y~gtI~~V~~~-~gtC~V~F~D~s 52 (66)
T 2eqj_A 10 PACKFEEGQDVLARWSD-GLFYLGTIKKINIL-KQSCFIIFEDSS 52 (66)
T ss_dssp CCCCSCTTCEEEEECTT-SCEEEEEEEEEETT-TTEEEEEETTTE
T ss_pred ccccccCCCEEEEEEcc-CcEEEeEEEEEccC-CcEEEEEEccCC
Confidence 34579999999999933 36999999988653 345999999986
No 15
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00027 Score=44.11 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=36.1
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
..+.|..|+.|||.+=| --||.|+|...-.. +..|.|+|||++
T Consensus 6 ~~~~f~eGqdVLarWsD-GlfYlGtV~kV~~~-~~~ClV~FeD~s 48 (68)
T 2e5p_A 6 SGPRLWEGQDVLARWTD-GLLYLGTIKKVDSA-REVCLVQFEDDS 48 (68)
T ss_dssp CCCCCCTTCEEEEECTT-SSEEEEEEEEEETT-TTEEEEEETTTE
T ss_pred CCcccccCCEEEEEecC-CcEEEeEEEEEecC-CcEEEEEEccCC
Confidence 35679999999999999 48999999988653 335999999986
No 16
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=97.39 E-value=0.00059 Score=42.73 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=34.8
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
|...|..|+.|||.+=| --||.|+|+.. .++.|.|+|||++
T Consensus 12 pa~~~~~geDVL~rw~D-G~fYLGtIVd~---~~~~ClV~FeD~S 52 (69)
T 2xk0_A 12 PAVTYALQEDVFIKCND-GRFYLGTIIDQ---TSDQYLIRFDDQS 52 (69)
T ss_dssp CCCCCCTTCEEEEECTT-SCEEEEEEEEE---CSSCEEEEETTCC
T ss_pred cccccccCCeEEEEecC-CCEEEEEEEec---CCceEEEEecCCc
Confidence 44789999999999998 69999999753 3455999999997
No 17
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=97.34 E-value=0.00037 Score=44.60 Aligned_cols=46 Identities=20% Similarity=0.326 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 22 ETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 22 ~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
.+.+...|..|+.|||.+=|= -||.|+|+..-.. ++.|.|+|||++
T Consensus 20 ~~~p~~~f~eGeDVLarwsDG-lfYLGTI~kV~~~-~e~ClV~F~D~S 65 (79)
T 2m0o_A 20 TSGPRPRLWEGQDVLARWTDG-LLYLGTIKKVDSA-REVCLVQFEDDS 65 (79)
T ss_dssp CCSCCCCCCTTCEEEBCCTTS-CCCEEEEEEEETT-TTEEEEEETTSC
T ss_pred ccCCcceeccCCEEEEEecCC-CEEeEEEEEeccC-CCEEEEEEcCCC
Confidence 344567899999999999887 8999999976442 335999999987
No 18
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=96.32 E-value=4.7e-05 Score=48.90 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=32.5
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEcc
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fed 67 (92)
..|++|+.|||.|. --.||+|+|.+.... +.|.|.|+|
T Consensus 5 ~~~kvGd~clAkws-Dg~wY~A~I~~v~~~--~~y~V~F~D 42 (81)
T 2ldm_A 5 SEFQINEQVLASWS-DSRFYPAKVTAVNKD--GTYTVKFYD 42 (81)
Confidence 35899999999999 569999999998643 369999987
No 19
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.23 E-value=0.00047 Score=44.46 Aligned_cols=42 Identities=14% Similarity=0.396 Sum_probs=33.9
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 68 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd 68 (92)
...+++|+.|||+|-+--+||+|+|.+--.. .+.|.|.|.|=
T Consensus 8 ~~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~-~~~~~V~fiDY 49 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDGCIYPATIASIDFK-RETCVVVYTGY 49 (88)
T ss_dssp -CCCCSSCEEEEECTTTCCEEEEEEEEEETT-TTEEEEEETTT
T ss_pred cCCCCCCCEEEEEECCCCCEEEEEEEEecCC-CCEEEEEEecC
Confidence 4468999999999998889999999987432 24699999764
No 20
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=97.15 E-value=0.0012 Score=41.25 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=34.7
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
+...+.+|+.|||.|.+=-.||+|+|.+.-.. .+.|.|.|.|=.
T Consensus 6 ~~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~-~~~~~V~fiDYG 49 (78)
T 2d9t_A 6 SGKVWKPGDECFALYWEDNKFYRAEVEALHSS-GMTAVVKFTDYG 49 (78)
T ss_dssp CCCCCCTTCEEEEECTTTCCEEEEEEEEECSS-SSEEEEEETTTT
T ss_pred CccCCCcCCEEEEEECCCCCEEEEEEEEEeCC-CCEEEEEEEcCC
Confidence 34568999999999987679999999987432 356999998743
No 21
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=97.09 E-value=0.00082 Score=49.84 Aligned_cols=43 Identities=26% Similarity=0.457 Sum_probs=35.7
Q ss_pred CCCCCCCCEEEEEcCCCC--cceeEEEecCCCCC-CCCeEEEEccC
Q psy6947 26 EALFPIGSVVMALYPQTT--CFYKAIVNSLPTTG-TDDYELLFEDN 68 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT--~FY~A~V~~~p~~~-~~~y~l~Fedd 68 (92)
...++.|++|.|+|-+.+ .||.++|..+|... +..|.|-|||-
T Consensus 66 ~~~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG 111 (213)
T 3dlm_A 66 ADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDG 111 (213)
T ss_dssp GGGCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTS
T ss_pred ccEEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCC
Confidence 346999999999999976 89999999999954 45688888653
No 22
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=97.00 E-value=0.0011 Score=47.05 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=33.0
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
-..|.+|||.|.+---||+|+|... .+.+.|.|+|||..
T Consensus 9 ~~iG~rVfArWsd~~yyYpG~V~~~--~~~~~Y~V~FdDG~ 47 (156)
T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRD--VGAGKYKLLFDDGY 47 (156)
T ss_dssp CSTTCEEEECSSCSSEEEEEEEEEC--CTTTEEEEECTTSC
T ss_pred chhccEEEEEcCCCCcccccEEEEe--ccCCEEEEEEcCCC
Confidence 3679999999999888889999986 34456999998876
No 23
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=96.96 E-value=0.00075 Score=47.84 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=32.6
Q ss_pred CCEEEEEcCC-CCcceeEEEecCCCC---CCCCeEEEEccCC
Q psy6947 32 GSVVMALYPQ-TTCFYKAIVNSLPTT---GTDDYELLFEDNS 69 (92)
Q Consensus 32 g~~VLAlYP~-TT~FY~A~V~~~p~~---~~~~y~l~Fedd~ 69 (92)
-.+|+|.|++ =.++|+|+.++.+.. ++..|.|+|||.+
T Consensus 9 ~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~ 50 (153)
T 2fhd_A 9 KNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDAT 50 (153)
T ss_dssp GGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSC
T ss_pred cceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCC
Confidence 3589999996 679999999999865 6678999999985
No 24
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.92 E-value=0.0016 Score=40.73 Aligned_cols=42 Identities=29% Similarity=0.429 Sum_probs=33.9
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
..+++|+.|+|.|.+=-.+|+|+|.+....+ +.+.|.|.|=.
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~-~~~~V~fvDYG 57 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSG-MTAVVKFIDYG 57 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTS-SEEEEEETTTC
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCC-CEEEEEEEcCC
Confidence 4589999999999877799999999874322 45999998754
No 25
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=96.64 E-value=0.0035 Score=39.50 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
....+|+.|+|.|.+--.+|||.|.+... .+.+.|.|-|=.
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~--~~~~~V~fvDyG 66 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLE--NGNLDLYFVDFG 66 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECT--TSCEEEEETTTC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECC--CCeEEEEEEcCC
Confidence 35789999999999889999999998753 346999998865
No 26
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.34 E-value=0.0073 Score=39.07 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=33.8
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
...+|+.|+|.|.+--.+|||.|.+.... +.+.|.|-|=.
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~--~~~~V~fvDyG 71 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN--GNLDLYFVDFG 71 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS--SCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC--CeEEEEEEeCC
Confidence 47889999999998789999999987543 46999998865
No 27
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=95.44 E-value=0.027 Score=38.81 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=34.1
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
...+|+.|+|.|++--.+|||.|.+....+ .+.|.|-|=.
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~--~~~V~fvDyG 86 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG--KCEVHFIDFG 86 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT--CEEEEETTTT
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC--EEEEEEEecC
Confidence 578999999999988899999999876543 5999998765
No 28
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=94.77 E-value=0.098 Score=31.52 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=33.6
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
+...|+.|.+|-|+-+.-.. |.|+|......+ ..+.|.|+|=+
T Consensus 9 ~~~~F~vGmkLEa~d~~~p~-~~AtV~~v~~~~-~~~~VhfdGw~ 51 (69)
T 3sd4_A 9 RGISFEVGAQLEARDRLKNW-YPAHIEDIDYEE-GKVLIHFKRWN 51 (69)
T ss_dssp TTCCCSTTCEEEEECTTSCE-EEEEEEEEETTT-TEEEEEETTSC
T ss_pred CCCCcCCCCEEEEEECCCCc-cccEEEEEeccC-CEEEEEeCCCC
Confidence 45679999999999998877 999999852222 34899998743
No 29
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.67 E-value=0.047 Score=35.04 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=35.8
Q ss_pred CCCCCCCCCEEEEEcC---CCCcceeEEEecCCC-CCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYP---QTTCFYKAIVNSLPT-TGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP---~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~ 69 (92)
....|..|.+|++.++ ....+|.|+|.+.-. .+...|-|.|+|=+
T Consensus 6 ~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~N 54 (87)
T 2eko_A 6 SGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFN 54 (87)
T ss_dssp SSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSC
T ss_pred ccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCC
Confidence 3567999999999997 577999999988643 34557999998754
No 30
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=94.30 E-value=0.026 Score=35.22 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=33.0
Q ss_pred CCCCCCCEEEEEcCCC--CcceeEEEecCCC-CCCCCeEEEEccC
Q psy6947 27 ALFPIGSVVMALYPQT--TCFYKAIVNSLPT-TGTDDYELLFEDN 68 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~T--T~FY~A~V~~~p~-~~~~~y~l~Fedd 68 (92)
..|..|.+||+.++++ ...|.|.|.+.-. .+...|.|.|.|=
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gw 48 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGW 48 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTS
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCc
Confidence 4699999999999953 6899999988643 2334699999864
No 31
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=94.18 E-value=0.071 Score=37.00 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
....|+.|+|.|.+--.+|+|.|.+... +.+.|.|-|-..
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~---~~~~V~~vDyG~ 90 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG---SNATVLYIDYGN 90 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET---TEEEEEETTTCC
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC---CeEEEEEEecCC
Confidence 4678999999999777999999998754 569999988653
No 32
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=94.00 E-value=0.089 Score=36.92 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
....|+.++|.|.+--.+|||.|.+.... +.+.|.|-|=.
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~--~~~~V~~vDyG 104 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPS--GNVKVHFVDYG 104 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT--SCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC--CeEEEEEEccC
Confidence 35679999999999889999999986433 35999998865
No 33
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=93.86 E-value=0.063 Score=35.41 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCCCCCCCEEEEEcCC---CCcceeEEEecCCC------CCCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 26 EALFPIGSVVMALYPQ---TTCFYKAIVNSLPT------TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~---TT~FY~A~V~~~p~------~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
...|..|..||+.+++ --..|.|.|...-. .+...|.|.|.|=.. +=...||+--|+.+
T Consensus 17 ~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~----rwDEWV~edRilk~ 84 (101)
T 3m9q_A 17 TPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRP----SYDRAVRATVLLKD 84 (101)
T ss_dssp CCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCG----GGCEEECGGGEEEC
T ss_pred CCcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCc----CceeecCHHHcccC
Confidence 4569999999999986 55799999997633 223479999976431 01236666555543
No 34
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=93.75 E-value=0.066 Score=35.89 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCCCCCCCCCEEEEEcCCCC---cceeEEEecCCC--CCC----CCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 24 EPEALFPIGSVVMALYPQTT---CFYKAIVNSLPT--TGT----DDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 24 ~~~~~f~~g~~VLAlYP~TT---~FY~A~V~~~p~--~~~----~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
.+...|..|.+||+..|+.+ -.|.|.|...-. +.. ..|.|.|.|=.- . =...|++--|+.+
T Consensus 15 ~~k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~--~--WDEWV~~drllk~ 84 (110)
T 3oa6_A 15 GMKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR--S--WDRWAAEDHVLRD 84 (110)
T ss_dssp ---CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCG--G--GCEEEEGGGEEEC
T ss_pred CCCcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCc--c--hhhccChhhhhcC
Confidence 34567999999999999965 699999986521 111 259999976431 0 0236665555543
No 35
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=93.54 E-value=0.08 Score=34.91 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=33.3
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCC-CCCCCeEEEEccC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPT-TGTDDYELLFEDN 68 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd 68 (92)
+...|..|++||+.+ .-..|.|.|.+.-. .+...|.|.|.|=
T Consensus 19 ~~~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~Gw 61 (102)
T 2f5k_A 19 PKPKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGW 61 (102)
T ss_dssp CSCSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTS
T ss_pred CCcccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCc
Confidence 456799999999998 46899999998642 3445799999864
No 36
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=93.36 E-value=0.07 Score=36.10 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=34.0
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
.....|++|+|.-.+. -||+|+|.+.- .+..|.|.|+|-+.
T Consensus 4 ~~v~vGq~V~akh~ng-ryy~~~V~~~~--~~~~y~V~F~DgS~ 44 (118)
T 2qqr_A 4 QSITAGQKVISKHKNG-RFYQCEVVRLT--TETFYEVNFDDGSF 44 (118)
T ss_dssp SCCCTTCEEEEECTTS-SEEEEEEEEEE--EEEEEEEEETTSCE
T ss_pred ceeccCCEEEEECCCC-CEEeEEEEEEe--eEEEEEEEcCCCCc
Confidence 4578899999999966 89999999973 44569999998774
No 37
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=93.06 E-value=0.1 Score=37.30 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
....|+.++|.|.+--.+|||.|.+.... +.+.|.|-|=.
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~~--~~~~V~~vDyG 104 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPS--GNVKVHFVDYG 104 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSS--SEEEEECTTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC--CeEEEEEEecC
Confidence 35679999999998889999999986433 35999998865
No 38
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=91.33 E-value=0.027 Score=35.83 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=33.3
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCC-CCCCCeEEEEccC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPT-TGTDDYELLFEDN 68 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd 68 (92)
+...|..|.+||+.+.+ ..|.|.|.+.-. ++...|.|.|.|=
T Consensus 9 ~~~~~~~Gekv~~~~~~--~~y~AkIl~i~~~~~~~~YyVHY~Gw 51 (85)
T 2lrq_A 9 ANTLFVDGERVLCFHGP--LIYEAKVLKTKPDATPVEYYIHYAGW 51 (85)
Confidence 45679999999999976 579999998743 3445799999863
No 39
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=91.52 E-value=0.18 Score=34.25 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=32.0
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCC---CCCCCCeEEEEcc
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLP---TTGTDDYELLFED 67 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p---~~~~~~y~l~Fed 67 (92)
...|..|++||+.+.+ -.+|.|.|...- ..+...|.|.|.|
T Consensus 10 ~~~~~vGe~v~~~~~d-~~~y~AkIl~i~~~~~~~~~~YyVHY~g 53 (133)
T 1wgs_A 10 EVTVEIGETYLCRRPD-STWHSAEVIQSRVNDQEGREEFYVHYVG 53 (133)
T ss_dssp CCCCCTTSEEEEEETT-TEEEEEEEEEEEEETTTTEEEEEEECTT
T ss_pred ccccCCCCEEEEEeCC-CCEEEEEEEEEEeccCCCceEEEEeccC
Confidence 4569999999999973 479999999853 2344579999985
No 40
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=91.44 E-value=0.46 Score=30.57 Aligned_cols=42 Identities=10% Similarity=-0.054 Sum_probs=33.1
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCC-CCCCCeEEEEccCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPT-TGTDDYELLFEDNS 69 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~ 69 (92)
...|..|++|++.. .-.+|.|.|.+.-. .+...|-|.|.|=+
T Consensus 21 ~~~~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~N 63 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 63 (92)
T ss_dssp TTSCCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSC
T ss_pred cccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 45699999999996 66899999997643 34457999998754
No 41
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=91.17 E-value=0.041 Score=37.52 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=35.0
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
...+..|+.|.|...+ .-||+|.|.+.-. +..|.|.|+|.+.
T Consensus 4 ~~~v~vGq~V~ak~~n-gryy~~~V~~~~~--~~~y~V~F~DgS~ 45 (123)
T 2xdp_A 4 EKVISVGQTVITKHRN-TRYYSCRVMAVTS--QTFYEVMFDDGSF 45 (123)
T ss_dssp CCCCCTTCCCCCCCCC-CCCCCCEEEEEEE--EEEEEEEETTSCE
T ss_pred ccccccCCEEEEECCC-CcEEeEEEEEEee--EEEEEEEcCCCCc
Confidence 3457889999999997 6999999998864 4569999998874
No 42
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=90.32 E-value=0.43 Score=34.02 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
....|+.|+|.|. --++|||.|.+.... +.+.|.|-|-.
T Consensus 65 ~~~~G~~c~a~~~-d~~wyRa~V~~~~~~--~~~~V~~vDyG 103 (246)
T 2hqx_A 65 APRRGEFCIAKFV-DGEWYRARVEKVESP--AKIHVFYIDYG 103 (246)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEET--TEEEEEETTTC
T ss_pred CCCCCCEEEEEcC-CCCEEEEEEEEEcCC--CeEEEEEEeCC
Confidence 4678999999998 468999999987432 35999998865
No 43
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=90.26 E-value=0.51 Score=30.63 Aligned_cols=43 Identities=9% Similarity=-0.049 Sum_probs=33.3
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCC-CCCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPT-TGTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~ 69 (92)
....|..|++|++.. .-.+|.|+|.+.-. .+...|-|.|.|=+
T Consensus 22 ~~~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~N 65 (94)
T 2rnz_A 22 SVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYN 65 (94)
T ss_dssp CGGGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSC
T ss_pred ccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcC
Confidence 345699999999996 66899999997643 34457999987653
No 44
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=89.92 E-value=0.3 Score=32.66 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=40.0
Q ss_pred CCCCCCCCEEEEEcCC---CCcceeEEEecCCCC----C--CCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 26 EALFPIGSVVMALYPQ---TTCFYKAIVNSLPTT----G--TDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~---TT~FY~A~V~~~p~~----~--~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
...|..|..||+.+++ +-..|.|.|+..-.. + ...|.|.|.|=.. . =...||.-.|+.+
T Consensus 17 ~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~--~--wDEWV~e~rllk~ 84 (110)
T 3m9p_A 17 KFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR--S--WDRWAAEDHVLRD 84 (110)
T ss_dssp -CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCG--G--GCEEEEGGGEEEC
T ss_pred CCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCc--c--hhhccCHhhhhcC
Confidence 4569999999999987 357999999987331 1 2469999976431 1 1236776666543
No 45
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=89.82 E-value=0.29 Score=36.12 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCCC-CCCeEEEEccCC
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTTG-TDDYELLFEDNS 69 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~-~~~y~l~Fedd~ 69 (92)
..++.|.+|||.. -|-++|+|+|..--..+ ...|.|+|++..
T Consensus 7 ~~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~g 49 (213)
T 3dlm_A 7 GDLIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNKG 49 (213)
T ss_dssp TTEETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSSC
T ss_pred CcEEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCCC
Confidence 3578999999999 77899999999843322 245999999543
No 46
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=89.08 E-value=1.3 Score=27.96 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=32.8
Q ss_pred CCCCCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 23 TEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 23 ~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
..+...|+.|.+|-|+-..=. .|.|+|...-..+. .|.|.|+|=+
T Consensus 14 ~~~~~~F~vGmkLEA~D~~~~-~~~a~i~~v~~~~~-~v~VHfdGW~ 58 (88)
T 2eqm_A 14 NRPGITFEIGARLEALDYLQK-WYPSRIEKIDYEEG-KMLVHFERWS 58 (88)
T ss_dssp SCSSCCCCSSCEEEEECTTSC-EEEEEEEEEETTTT-EEEEEESSST
T ss_pred CCCcCcCCCCCEEEEEcCCCC-eeEEEEEEEeccCC-EEEEEECCCC
Confidence 335667999999999987653 48888876543333 5999998754
No 47
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=85.46 E-value=3.5 Score=26.72 Aligned_cols=46 Identities=15% Similarity=0.375 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCEEEEEcCCCCcceeEEEecCCCC----CCCCeEEEEccCC
Q psy6947 23 TEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTT----GTDDYELLFEDNS 69 (92)
Q Consensus 23 ~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~----~~~~y~l~Fedd~ 69 (92)
......|..|+.|+|-. ..=.+.+|.|...|.. ..+.|.|.|=|+.
T Consensus 14 ~~~~~~~~~GdlVwaK~-kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~ 63 (110)
T 1ri0_A 14 SNRQKEYKCGDLVFAKM-KGYPHWPARIDEMPEAAVKSTANKYQVFFFGTH 63 (110)
T ss_dssp CCCSSSCCTTCEEEEEE-TTEEEEEEEEECCCSSSSCCCSSCEEEEETTTT
T ss_pred ccccCCCCCCCEEEEEe-CCCCCCCEEEecccHhhcCCCCCEEEEEEecCC
Confidence 33456799999999986 3346899999987753 3457999998774
No 48
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=83.48 E-value=1.1 Score=36.14 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
....|+.|+|.|. --++|+|.|.+... .+.+.|.|-|-..
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~--~~~~~V~fvDyGn 450 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVES--PAKIHVFYIDYGN 450 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEE--TTEEEEEETTTCC
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcC--CCeEEEEEEeCCC
Confidence 4678999999998 46899999998754 3469999998653
No 49
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.63 E-value=3.6 Score=26.22 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=35.2
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
......|..|-|.|+++-..|||.|.+.-+.+. ..|.|=|=.
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~--veVl~~DyG 60 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTL--VEVLLYDVG 60 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSE--EEEECTTTC
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCe--EEEEEEccC
Confidence 446788999999999999999999999876665 788886653
No 50
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=79.05 E-value=5.5 Score=26.84 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=39.9
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCCC----CCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPTT----GTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~----~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
..|..|+.|+|-..+ -.+.+|.|..++.. ....|.|.|=|+.+ .-.|..+-+.+|
T Consensus 21 ~~f~~GdlVwaK~~g-~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~------~awv~~~~l~~f 79 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG-YPHWPARVDEVPDGAVKPPTNKLPIFFFGTHE------TAFLGPKDIFPY 79 (153)
T ss_dssp GGCCTTCEEEECCTT-SCCEEEEECCCC---CCCCTTCEEEEETTTCC------EEEECGGGEEEH
T ss_pred cCCCCCCEEEEeCCC-CCCCCEEEeEchhhccCCCCCEEEEEecCCCC------eEEeCHHHccCh
Confidence 359999999999866 47999999988653 23579999988752 236666666655
No 51
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=75.18 E-value=11 Score=24.78 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=41.5
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCCC--------CCCeEEEEccCCCCCCCCCCeeecCeEEEeeec
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTTG--------TDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 90 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~--------~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~~ 90 (92)
...|..|+.|+|-.-+- .+++|.|...+..+ ...|.|.|=|+... .-.|+..-+.+|.+
T Consensus 20 ~~~~~~GdlVwaK~~g~-P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~-----~aWv~~~~l~pf~~ 86 (134)
T 2gfu_A 20 SSDFSPGDLVWAKMEGY-PWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPT-----RGWVSKRLLKPYTG 86 (134)
T ss_dssp SCCCCTTSEEEECCTTS-CCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCE-----EEEECGGGEEESCC
T ss_pred CCCCCCCCEEEEeecCC-CCCCeeecchhhhhhhhhccCCCceEEEEECCCCCc-----eEEECHHHcccCcc
Confidence 35799999999987643 78999999987432 24699999877410 12666666666543
No 52
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=74.91 E-value=4.6 Score=27.20 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=33.6
Q ss_pred CCEEEEEcCCC--CcceeEEEecCCCC-----CCCCeEEE-EccCCCCCCCCCCeeecCeEEEee
Q psy6947 32 GSVVMALYPQT--TCFYKAIVNSLPTT-----GTDDYELL-FEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 32 g~~VLAlYP~T--T~FY~A~V~~~p~~-----~~~~y~l~-Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
|. |.+++.++ +++|+|.|++|--. +.++|.|+ |-|.- -..||++-|-.+
T Consensus 14 Gk-VV~V~~~~kk~~WfPALVVsPs~~d~v~vkKd~~LVRSFkDgK-------f~sV~rkdv~e~ 70 (117)
T 2yrv_A 14 GK-VVSVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDSK-------FYSIARKDIKEV 70 (117)
T ss_dssp TS-EEEEECSSCSSCEEEEEEECCSSCSSCCCCTTCEEEEESSSCC-------EEEECTTTEECC
T ss_pred Cc-EEEEecCCCCCceeeeEEECCCCCCCeeeccceEEEEeeccCe-------EEEEEhHhhhhc
Confidence 54 56778764 58999999998432 34678888 75553 357777766554
No 53
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=74.24 E-value=13 Score=25.23 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=40.4
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecC--CCCC---------------------------CCCeEEEEccCCCCCCCCCC
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSL--PTTG---------------------------TDDYELLFEDNSYADNYAPP 77 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~--p~~~---------------------------~~~y~l~Fedd~~~~G~sp~ 77 (92)
..|..|+.|.|-= .+-=+|+|.|+.+ |..+ ...|.|+|=|+.. .
T Consensus 4 ~~~~~~dlVWAK~-~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~------t 76 (130)
T 3l42_A 4 SPLDALDLVWAKC-RGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKR------T 76 (130)
T ss_dssp SSSCTTCEEEECC-TTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTC------C
T ss_pred ccCCCCCEEEEec-ccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCC------c
Confidence 4599999999987 6666999999985 3311 3459999987542 2
Q ss_pred e-eecCeEEEeee
Q psy6947 78 L-GVPQRYVIAYK 89 (92)
Q Consensus 78 ~-~V~~ryVv~~~ 89 (92)
+ .|+.+.+-++.
T Consensus 77 ~aWv~~~~i~pl~ 89 (130)
T 3l42_A 77 WQWLPRTKLVPLG 89 (130)
T ss_dssp EEEEEGGGEEESS
T ss_pred eEeecccceeecC
Confidence 3 77777776654
No 54
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=73.79 E-value=12 Score=23.79 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=38.7
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecC-----------CCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSL-----------PTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~-----------p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
...|..|+.|+|-.-+ -..++|.|..+ |+.....|.|+|=|+.+ .-.|+.+-+.++
T Consensus 4 ~~~~~~GdlVwaK~~g-yP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~------~aWv~~~~l~p~ 70 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSG-FPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKE------YLWTGSDSLTPL 70 (109)
T ss_dssp CCCCCTTCEEEEEETT-EEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTC------CEEEEGGGEEEC
T ss_pred cccCCCCCEEEEEeCC-cCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCCC------EEEECHHHeeeC
Confidence 4469999999998743 47899999953 22224579999988752 235666655555
No 55
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=71.96 E-value=9.6 Score=26.06 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecC
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSL 53 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~ 53 (92)
+.|++|..|||.+=.+ .|.|.|...
T Consensus 6 p~f~~gE~VlcfHg~~--~YeAKIl~i 30 (130)
T 3e9g_A 6 QEFALGGRCLAFHGPL--MYEAKILKI 30 (130)
T ss_dssp -CCCTTCEEEEEETTE--EEEEEEEEE
T ss_pred ccccCCCEEEEEeCCc--ceeeEEEEe
Confidence 4699999999999876 899999987
No 56
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=71.37 E-value=4.9 Score=29.60 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCC--------CCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTG--------TDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~--------~~~y~l~Fedd~ 69 (92)
.|..|+.|.|+-...-+||.|.|+.--+.. .-.|.++|||..
T Consensus 2 ~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~ 51 (226)
T 3ask_A 2 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYP 51 (226)
T ss_dssp CSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCG
T ss_pred ccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCc
Confidence 589999999999999999999998764321 136999999884
No 57
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=69.55 E-value=16 Score=22.75 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCC----CCCCeEEEEccCCCCCCCCCCeeecCeEEEee
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTT----GTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 88 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~----~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~ 88 (92)
.|..|+.|+|-.-. =-+-+|.|...+.. ..+.|.|.|=|+.+ .-.|+.+-+.+|
T Consensus 5 ~f~~GdlVwaK~~g-~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~------~awv~~~~l~pf 62 (94)
T 3qby_A 5 AFKPGDLVFAKMKG-YPHWPARIDDIADGAVKPPPNKYPIFFFGTHE------TAFLGPKDLFPY 62 (94)
T ss_dssp CCCTTCEEEECCTT-SCCEEEEECCCCTTSBCCCTTCEEEEETTTCC------EEEECGGGEEEH
T ss_pred cCccCCEEEEecCC-CCCCCEEEeecccccccCCCCEEEEEEEcCCC------cceEchhHeeEH
Confidence 59999999998744 36789999988643 23579999988752 225655555544
No 58
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=69.25 E-value=4.3 Score=27.17 Aligned_cols=51 Identities=25% Similarity=0.266 Sum_probs=37.4
Q ss_pred CCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEeee
Q psy6947 29 FPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 89 (92)
Q Consensus 29 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~ 89 (92)
=+.|+.|.=+|+|=. -|.|+..+.-. ...|.|.|||.+ .+.+++.-|-...
T Consensus 64 P~~G~~V~V~W~DG~-~y~a~f~g~~~--~~~Y~V~feDgs-------~~~~kR~~iyt~~ 114 (118)
T 2qqr_A 64 PAEGEVVQVRWTDGQ-VYGAKFVASHP--IQMYQVEFEDGS-------QLVVKRDDVYTLD 114 (118)
T ss_dssp CCTTCEEEEECTTSC-EEEEEEEEEEE--EEEEEEEETTSC-------EEEECGGGEEETT
T ss_pred CCCCCEEEEEcCCCC-EeeeEEeceeE--EEEEEEEECCCC-------EEEEcHHHeeccc
Confidence 457999999999985 89999886533 235999999986 4566666554433
No 59
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=68.34 E-value=8.8 Score=24.32 Aligned_cols=43 Identities=9% Similarity=0.152 Sum_probs=32.7
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCC---------CCCCCeEEEEccCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPT---------TGTDDYELLFEDNS 69 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~---------~~~~~y~l~Fedd~ 69 (92)
...+..|+.|.|-.-. -.+++|.|..+.. .....|.|.|=|+.
T Consensus 6 g~~~~~GdlVwaK~~g-~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~ 57 (110)
T 2daq_A 6 SGKLHYKQIVWVKLGN-YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSH 57 (110)
T ss_dssp CCSCCSSEEEEEECSS-SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTT
T ss_pred CCCCCCCCEEEEEeCC-CCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCC
Confidence 4468899999999876 5799999998831 12356999998764
No 60
>2w4y_A Caulobacter 5 virus-like particle; structure, assembly, calcium ION, RNA; HET: AMP; 2.90A {Unclassified levivirus} PDB: 2w4z_A*
Probab=68.01 E-value=5.7 Score=26.20 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=37.7
Q ss_pred EcCCCCcceeEEEecCC-----CCCC-CCeEEEEccCCCCCCCCCCeeecCeEEEeee
Q psy6947 38 LYPQTTCFYKAIVNSLP-----TTGT-DDYELLFEDNSYADNYAPPLGVPQRYVIAYK 89 (92)
Q Consensus 38 lYP~TT~FY~A~V~~~p-----~~~~-~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~ 89 (92)
..|+|++=++|.|.-.. .+.+ +.-.+.|...-++.|-+|+ -|-|-||+.--
T Consensus 33 ylpetsssfrakvrhtkesvkpnqvqyerhnveftetvyasgstpe-fvrqayvvirh 89 (122)
T 2w4y_A 33 YLPETSSSFRAKVRHTKESVKPNQVQYERHNVEFTETVYASGSTPE-FVRQAYVVIRH 89 (122)
T ss_dssp EEECSSEEEEEEEEEEECCCCTTSCCEEEEEEEEEEEECCBTTBCC-EEEEEEEEEEE
T ss_pred EccccchHHHHHhhhcccccCccceeeeeccceEEEEEEecCCChH-HhheeeEEEEe
Confidence 45999999999997552 2222 3457889999999997765 57788888643
No 61
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=66.12 E-value=31 Score=24.06 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCCCC-----------------------------CCCCeEEEEccCCCCCCCCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLPTT-----------------------------GTDDYELLFEDNSYADNYAP 76 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~-----------------------------~~~~y~l~Fedd~~~~G~sp 76 (92)
...|..|+.|.|-- .+==+|+|.|+.+... ....|.|+|=|+...
T Consensus 34 ~~~~~pgdlVWAK~-~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t----- 107 (158)
T 3pfs_A 34 RGDLEPLELVWAKC-RGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRT----- 107 (158)
T ss_dssp CSCCCTTCEEEEEC-TTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCC-----
T ss_pred CCCCCCCCEEEEec-CCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCc-----
Confidence 45699999999998 5667999999985321 234699999886421
Q ss_pred CeeecCeEEEeee
Q psy6947 77 PLGVPQRYVIAYK 89 (92)
Q Consensus 77 ~~~V~~ryVv~~~ 89 (92)
--.|+++.+.++.
T Consensus 108 ~aWV~~~~L~Pl~ 120 (158)
T 3pfs_A 108 WQWLPRDKVLPLG 120 (158)
T ss_dssp EEEEEGGGEEECS
T ss_pred eEeeccccEeecC
Confidence 2277777776654
No 62
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=63.19 E-value=26 Score=24.08 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=42.2
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCC-----CCCCCeEEEEccCCCCCCCCCCeeecCeEEEeee
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPT-----TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 89 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-----~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~ 89 (92)
....|..|+.|.|---. -...+|.|...+. ...+.|.|.|=|+.+ .-.|...-+.+|.
T Consensus 13 dg~~f~~GDLVWaKvkG-~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~------~awv~~~~L~pf~ 75 (154)
T 3llr_A 13 DGRGFGIGELVWGKLRG-FSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGK------FSVVCVEKLMPLS 75 (154)
T ss_dssp SSCCCCTTCEEEECCTT-SCCEEEEEECGGGTTSCCCCTTEEEEEETTTCC------EEEEEGGGEEEGG
T ss_pred cCCCCccCCEEEEecCC-CCCCCEEEecccccccccCCCCEEEEEEeCCCC------EEEEcHHHCcchh
Confidence 34579999999999855 4889999998752 233579999988862 2366666666653
No 63
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=62.22 E-value=20 Score=24.23 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCCCCCCCCEEEEEcCCCCcceeEEEecCCCC-----CCCCeEEEEccCC
Q psy6947 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTT-----GTDDYELLFEDNS 69 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~-----~~~~y~l~Fedd~ 69 (92)
....|..|+.|.|--- .-..++|.|..++.. ..+.|.|.|=|+.
T Consensus 8 ~~~~~~~GDlVWaKvk-GyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~ 56 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIK-GFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDG 56 (147)
T ss_dssp SSSSCCTTCEEEEEET-TTEEEEEEEECGGGTTSCCCCTTEEEEEETTTC
T ss_pred CCccCcCCCEEEEecC-CcCCCCEEeccchhhhcccCCCCeEEEEEecCC
Confidence 3457999999999863 347899999987653 2357999998875
No 64
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=57.69 E-value=6.8 Score=26.37 Aligned_cols=39 Identities=28% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~ 69 (92)
.-+.|+.|.=+|+|=. -|.|+..+.-.. ..|.|.|||.+
T Consensus 64 pP~~G~~V~V~W~DG~-~y~a~f~g~~~~--~~YtV~FeDgs 102 (123)
T 2xdp_A 64 PPAEGEVVQVKWPDGK-LYGAKYFGSNIA--HMYQVEFEDGS 102 (123)
T ss_dssp CCCTTCEEEEECTTSC-EEEEEEEEEEEE--EEEEEECTTSC
T ss_pred CCCCCCEEEEEcCCCC-EEeEEEeeeeeE--EEEEEEECCCC
Confidence 3567999999999864 889998876433 35999999886
No 65
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=56.35 E-value=22 Score=23.85 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCCCCCCCEEEEEcCCCC----cceeEEEecCCCCCCCCeEEEEcc
Q psy6947 26 EALFPIGSVVMALYPQTT----CFYKAIVNSLPTTGTDDYELLFED 67 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT----~FY~A~V~~~p~~~~~~y~l~Fed 67 (92)
...|..|+.|=++.-..- +.|+|+|.... .+.|.|.|.+
T Consensus 58 ~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k---g~f~~V~y~~ 100 (128)
T 3h8z_A 58 NKEITEGDEVEVYSRANEQEPCGWWLARVRMMK---GDFYVIEYAA 100 (128)
T ss_dssp --CCCTTCEEEEEECC---CCCEEEEEEEEEEE---TTEEEEEETT
T ss_pred ccCCCCCCEEEEEecCCCCCcCccEEEEEEEee---CCEEEEEEcC
Confidence 467999999999987543 59999998764 3469999876
No 66
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=52.92 E-value=29 Score=22.59 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=33.5
Q ss_pred CCCCCCCCEEEEEcCCC-CcceeEEEecCCCCCCCCeEEEEccCCCC
Q psy6947 26 EALFPIGSVVMALYPQT-TCFYKAIVNSLPTTGTDDYELLFEDNSYA 71 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~T-T~FY~A~V~~~p~~~~~~y~l~Fedd~~~ 71 (92)
...|++|.++=|+=|.- ..++.|+|...- ....+|+|||-++.
T Consensus 11 ~~~F~~GMKLEAvD~~~p~~icvATV~~v~---g~rl~v~fDGw~~~ 54 (107)
T 1wjq_A 11 PHGFQKKMKLEVVDKRNPMFIRVATVADTD---DHRVKVHFDGWNNC 54 (107)
T ss_dssp SSSCCSSCEEEEECTTCTTCEEEEEEEEEC---SSCEEEECSSSCGG
T ss_pred cccCCCCCEEEEEcCCCCCcEEeEEEEEec---CCEEEEEeCCCCCc
Confidence 45699999999999885 458899999882 23489999876643
No 67
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=51.87 E-value=14 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSLP 54 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p 54 (92)
...|..|.+|||.. + -.+|.|.|...-
T Consensus 7 ~~~f~~gekvl~~h-g-~llYeAKVl~v~ 33 (136)
T 2k3y_A 7 EQEFALGGRVLAFH-G-PLMYEAKILKIW 33 (136)
T ss_dssp GGSCCTTSEEEEEC-S-SCEEEEEEEEEE
T ss_pred ccccCCCCEEEEEE-C-CeeEEEEEEEEE
Confidence 34699999999999 3 459999998753
No 68
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=49.44 E-value=59 Score=22.98 Aligned_cols=59 Identities=22% Similarity=0.153 Sum_probs=39.5
Q ss_pred CCCCCCCEEEEEcCC---CCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCCCeeecCeEEEeeec
Q psy6947 27 ALFPIGSVVMALYPQ---TTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 90 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~---TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~~ 90 (92)
..+.+|+.|-|.=-. ...+--|.|++--. ....|.|+=+|+ +|. ....++++.||+++.
T Consensus 43 ~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~-~~~rYeV~D~d~---eg~-~~~~~s~~~IIPLP~ 104 (180)
T 3mea_A 43 YVARPGDKVAARVKAVDGDEQWILAEVVSYSH-ATNKYEVDDIDE---EGK-ERHTLSRRRVIPLPQ 104 (180)
T ss_dssp CCCCTTCEEEEEEECCC--EEEEEEEEEEEET-TTTEEEEEECCT---TCC-EEEEEEGGGEEECCS
T ss_pred cccCCCCEEEEEcCCCCCCccEEEEEEEEEcC-CCCEEEEecCCC---CCc-eeEEeCHHHEEECCC
Confidence 368999999998542 25788899987432 334587764443 342 134888899998874
No 69
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=47.98 E-value=8.5 Score=27.09 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCCCCCEEEEEcCCCCcceeEEEecCCCC--CCCCeEEEEccCCCCCCCCCCeeecCeEEEe
Q psy6947 28 LFPIGSVVMALYPQTTCFYKAIVNSLPTT--GTDDYELLFEDNSYADNYAPPLGVPQRYVIA 87 (92)
Q Consensus 28 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~--~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~ 87 (92)
.+|+|+.|+|+ ..-+||-+-|+....+ +...|.|++++.. .++++.=|+.
T Consensus 61 ~LP~~~~V~A~--~~ddy~s~giI~~h~~~~~e~~Y~Ve~~G~t--------~~~~~~dI~L 112 (156)
T 1ssf_A 61 PIPLDTEVTAL--SEDEYFSAGVVKGHRKESGELYYSIEKEGQR--------KWYKRMAVIL 112 (156)
T ss_dssp CSCSSEEEEES--SCTTTCEEEEEEEEEEETTEEEEEEEETTEE--------EEECGGGEEE
T ss_pred ccCCCcEEEEc--cCCccccccEEEeecCCCCcEEEEEEeCCcE--------EEEEeeeEEE
Confidence 46778999999 5578888777764332 2346999995542 4566554443
No 70
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=40.88 E-value=30 Score=22.12 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCcceeEEEecCCCC----CCCCeEEEEccCC
Q psy6947 31 IGSVVMALYPQTTCFYKAIVNSLPTT----GTDDYELLFEDNS 69 (92)
Q Consensus 31 ~g~~VLAlYP~TT~FY~A~V~~~p~~----~~~~y~l~Fedd~ 69 (92)
.|++||+...+- .+|+|+|.+.-.. +.-.|-|.|.|=.
T Consensus 17 ~~e~vlc~~~dg-~~yeAeIl~ir~~~~~~~~~~YYVHY~g~N 58 (92)
T 2bud_A 17 PDKIYFIRREDG-TVHRGQVLQSRTTENAAAPDEYYVHYVGLN 58 (92)
T ss_dssp TTSCEEEECTTS-CEEEEEEEEEECTTTCSSCCEEEEECSSSC
T ss_pred CCCEEEEEeCCC-CEEEEEEEEEeeccCCCCCcEEEEEeCCcc
Confidence 388999999743 6999999986433 2346889987653
No 71
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=40.58 E-value=30 Score=24.34 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCCCCCCCEEEEEcCCCCcceeEEEecC-CCC----------------CCCCeEEEEccCCCCCC
Q psy6947 26 EALFPIGSVVMALYPQTTCFYKAIVNSL-PTT----------------GTDDYELLFEDNSYADN 73 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~-p~~----------------~~~~y~l~Fedd~~~~G 73 (92)
...|+.|..|=|+=.+.-+.+.|.|+.- .+. ..-.|.|+|||.. ++|
T Consensus 8 ~glYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddyp-e~g 71 (161)
T 3db3_A 8 LGLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYP-ENG 71 (161)
T ss_dssp CCSSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCG-GGC
T ss_pred cceEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCc-cCC
Confidence 4579999999999999999999999983 211 1126999999886 455
No 72
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=39.47 E-value=49 Score=24.11 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=34.3
Q ss_pred CCCCCCCCCEEEEEcCC-CCcceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 25 PEALFPIGSVVMALYPQ-TTCFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~-TT~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
+...|..|.++=|+=|. .+.|+.|+|...- + +..+|+|||.++
T Consensus 59 ~~~~f~vGmKLEa~D~~~~~~~~vATV~~v~--g-~~l~l~~dG~d~ 102 (243)
T 2biv_A 59 PVNDFKVGMKLEARDPRNATSVCIATVIGIT--G-ARLRLRLDGSDN 102 (243)
T ss_dssp CCCCCCTTCEEEEEETTEEEEEEEEEEEEEE--T-TEEEEEETTSCS
T ss_pred CcccccCCCEEEEecCCCCCcEEEEEEEEEe--C-CEEEEEECCCCC
Confidence 34579999999999987 4589999999873 2 358999998764
No 73
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=37.63 E-value=63 Score=24.83 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=40.8
Q ss_pred CCCCCCCCEEEEEcC---CCCcceeEEEecCCCCCCCCeEEEEccCCCCCCCCC-CeeecCeEEEeeec
Q psy6947 26 EALFPIGSVVMALYP---QTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAP-PLGVPQRYVIAYKK 90 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP---~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~G~sp-~~~V~~ryVv~~~~ 90 (92)
.....+|+.|-|.=. +....=-|+|++--..+. .|.|.=+|.++ +|-.. ...++++.||++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~~-~y~v~d~~~~~-~~~~~~~~~~~~~~~~~~p~ 451 (522)
T 3mp6_A 385 NAPILVGSEVAYKPRRGSADGEWIQCEVLKVVADGT-RFEVRDPEPDE-LGNSGKVYKCNRKELLLIPP 451 (522)
T ss_dssp CCCBCTTCEEEECCC-----CCEEEEEEEEEETTTT-EEEEEECSCBT-TBTTCEEEEECGGGEEEECS
T ss_pred ccccCCCCEEEEecCCCCCCCCEEEEEEEEEeCCCC-EEEEeCCCCCC-CCCCCeeEEccHHHEEECCC
Confidence 345788999998732 346778888876643332 58887554443 33222 34999999999974
No 74
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=33.23 E-value=46 Score=21.04 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEEcCCCCcceeEEEecCCC---------CCCCCeEEEEccCCCCCCCCCCeeecCeEEEeee
Q psy6947 27 ALFPIGSVVMALYPQTTCFYKAIVNSLPT---------TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 89 (92)
Q Consensus 27 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~---------~~~~~y~l~Fedd~~~~G~sp~~~V~~ryVv~~~ 89 (92)
..|..|+.|+|--- .=-.++|.|..+.. .....|.|.|=|+.+ .-.|+.+-+.++.
T Consensus 4 ~~~~~GdlVwaK~~-gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~------~aWv~~~~l~p~~ 68 (108)
T 2l89_A 4 DRLNFGDRILVKAP-GYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFN------FAWVKRNSVKPLL 68 (108)
T ss_dssp CCCCTTEEEEEECS-SSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTE------EEEECGGGEEECC
T ss_pred CcccCCCEEEEEeC-CcCCCceEecCcccCcHHHhhccCCCCeEEEEECCCCC------EEEEchhhceeCC
Confidence 46899999999854 22478999987521 123579999977642 1255555555443
No 75
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=32.36 E-value=48 Score=21.89 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=33.8
Q ss_pred CCCCCCCCEEEEEcCCC-CcceeEEEecCCCCCCCCeEEEEccCCCCC
Q psy6947 26 EALFPIGSVVMALYPQT-TCFYKAIVNSLPTTGTDDYELLFEDNSYAD 72 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~T-T~FY~A~V~~~p~~~~~~y~l~Fedd~~~~ 72 (92)
...|+.|.++=|+=|.. ..|.-|+|+..-. +..+|+|||-++.+
T Consensus 9 ~~~f~~GmKLEa~D~~~p~~~~vAtV~~v~g---~rl~l~~dG~~~~~ 53 (127)
T 1wjr_A 9 IDLITVGSLIELQDSQNPFQYWIVSVIENVG---GRLRLRYVGLEDTE 53 (127)
T ss_dssp HHHCCTTCEEEEECSSCSSCEEEEECCCEET---TEEEECBTTCSSCC
T ss_pred hhhccCCCEeEEecCCCCCcEEEEEEeeeeC---CEEEEEecCCCCCC
Confidence 45699999999999986 5788888886642 35888898877533
No 76
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=31.54 E-value=79 Score=23.38 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=33.3
Q ss_pred CCCCCCCCEEEEEcCCCC-cceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 26 EALFPIGSVVMALYPQTT-CFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 26 ~~~f~~g~~VLAlYP~TT-~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
...|++|.++=|+=|... .|+.|+|...-.. .+.|+|||.++
T Consensus 32 ~~~F~vGMKLEavDp~~~~~icvATV~~v~g~---~l~l~~DG~d~ 74 (265)
T 2r58_A 32 NNDFKIGMKLEALDPRNVTSTCIATVVGVLGS---RLRLRLDGSDS 74 (265)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEETT---EEEEEETTSCS
T ss_pred ccccccCCEeEEecCCCCCCEEEEEEEEEeCC---EEEEEeCCCCC
Confidence 456999999999998854 6889999987532 58999997643
No 77
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=28.94 E-value=1.3e+02 Score=21.84 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCCCCCCCCEEEEEcCCCC-cceeEEEecCCCCCCCCeEEEEccCCC
Q psy6947 25 PEALFPIGSVVMALYPQTT-CFYKAIVNSLPTTGTDDYELLFEDNSY 70 (92)
Q Consensus 25 ~~~~f~~g~~VLAlYP~TT-~FY~A~V~~~p~~~~~~y~l~Fedd~~ 70 (92)
+...|..|.++=|+=|.-. ..+.|+|...- .+.+.|+|||-++
T Consensus 168 ~~~~F~~GmKLEavD~~~p~~icvATV~~v~---g~rl~v~fDgw~~ 211 (243)
T 2biv_A 168 PLNNFKVGMKLEAIDKKNPYLICPATIGDVK---GDEVHITFDGWSG 211 (243)
T ss_dssp SSCCCCTTCEEEEECTTSTTCEEEEEEEEEE---TTEEEEEETTSCG
T ss_pred ccccccCCCEEEEEccCCCCeEEEEEEEEec---CCEEEEEECCCCC
Confidence 3457999999999988854 56689998774 2348999987653
No 78
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=21.22 E-value=1.1e+02 Score=21.13 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEcCC---CCcceeEEEec----CCCCCCCCeEEEEccCC
Q psy6947 28 LFPIGSVVMALYPQ---TTCFYKAIVNS----LPTTGTDDYELLFEDNS 69 (92)
Q Consensus 28 ~f~~g~~VLAlYP~---TT~FY~A~V~~----~p~~~~~~y~l~Fedd~ 69 (92)
.-..|+.||-++|. ...|--+-+.+ +|....+.++++|.|-+
T Consensus 60 ~P~vGeqV~v~f~~Gd~~~gvVlg~~~s~~~~~P~~~~~~~~~~~~dG~ 108 (211)
T 3qr8_A 60 APSVGEQVLILAVGGELDTAFVLPGIYSGDNPSPSVSADALHIRFPDGA 108 (211)
T ss_dssp CCCTTCEEEEEECCTTTCCEEEEEEECCSSSCCSCCCSSCEEEECTTSC
T ss_pred CCCCCCEEEEEeCCCccCccEEEeeecCcccCCCCCCCCeEEEEcCCCC
Confidence 46789999999996 33443333222 23334456777776543
No 79
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=20.48 E-value=28 Score=24.57 Aligned_cols=15 Identities=40% Similarity=0.844 Sum_probs=13.2
Q ss_pred CCCCcceeEEEecCC
Q psy6947 40 PQTTCFYKAIVNSLP 54 (92)
Q Consensus 40 P~TT~FY~A~V~~~p 54 (92)
|+-||.|+-.||+-|
T Consensus 182 ~~~TClYr~RVhG~~ 196 (198)
T 4dxt_A 182 PEYTCIYRFRVHGEP 196 (198)
T ss_dssp SSEEEECEEEEEEEC
T ss_pred CCcEEEEEEEEcCEe
Confidence 678999999999876
Done!