RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6947
         (92 letters)



>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 28.6 bits (64), Expect = 0.024
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 31 IGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAP 76
           G  V++ + +   FY+  V  L  T    YE+ F+D S++DN  P
Sbjct: 5  AGQKVISKH-KNGRFYQCEVVRL--TTETFYEVNFDDGSFSDNLYP 47


>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3,
          TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 28.6 bits (64), Expect = 0.028
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 31 IGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67
           G    ALY +   FY+A V +L ++G     + F D
Sbjct: 5  PGDECFALYWEDNKFYRAEVEALHSSG-MTAVVKFTD 40


>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 27.5 bits (61), Expect = 0.070
 Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 31 IGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67
          +G    A++ +  C Y A + S+     +   +++  
Sbjct: 6  VGDKCSAIWSEDGCIYPATIASIDFKR-ETCVVVYTG 41


>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 55

 Score = 26.8 bits (59), Expect = 0.11
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 25 PEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67
          P   F  G VV   +P ++ +Y+  + S  +T +  Y + ++D
Sbjct: 2  PSRKFADGEVVRGRWPGSSLYYEVEILSHDST-SQLYTVKYKD 43


>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
          TDRKH {Human (Homo sapiens) [TaxId: 9606]}
          Length = 97

 Score = 24.9 bits (54), Expect = 1.1
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 17 KRANPETEPEALFPIGSVVMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 67
               +        +G +V A  P    +Y+A V      G    +L F D
Sbjct: 18 NSVPEDLTVH----VGDIVAAPLPTNGSWYRARVLGTLENGN--LDLYFVD 62


>d1vzia1 b.1.13.1 (A:38-125) Desulfoferrodoxin C-terminal domain
          {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId:
          887]}
          Length = 88

 Score = 24.3 bits (53), Expect = 1.4
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 16 TKRANPETEPEALFPIGSVVMALY 39
          T+   P   PEA+F I +  +   
Sbjct: 52 TQFLKPGQAPEAVFLIEAAKVVAR 75


>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
          INMT {Human (Homo sapiens) [TaxId: 9606]}
          Length = 257

 Score = 24.6 bits (52), Expect = 1.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 56 TGTDDYELLFEDNSYADNY 74
          TG D+Y+  F    Y   Y
Sbjct: 2  TGGDEYQKHFLPRDYLATY 20


>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 324

 Score = 23.5 bits (50), Expect = 5.2
 Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)

Query: 59  DDYELLFEDNSYA--DNYAPP 77
           D YELL  DN+    D Y   
Sbjct: 218 DQYELLCLDNTRKPVDEYKDC 238


>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 309

 Score = 23.2 bits (49), Expect = 7.3
 Identities = 4/12 (33%), Positives = 8/12 (66%)

Query: 53 LPTTGTDDYELL 64
          L ++G  D+ L+
Sbjct: 16 LESSGAGDFHLI 27


>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 159

 Score = 22.6 bits (48), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 2/20 (10%)

Query: 59  DDYELLFEDNSYA--DNYAP 76
           D+YELL  DN+    D +  
Sbjct: 135 DEYELLCPDNTRKPVDKFKD 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,487
Number of extensions: 13108
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 10
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)