BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6948
         (69 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
 pdb|3ME9|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
 pdb|3MET|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me2
 pdb|3MET|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me2
 pdb|3MEU|A Chain A, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
 pdb|3MEU|B Chain B, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
 pdb|3MEV|A Chain A, Crystal Structure Of Sgf29 In Complex With R2ak4me3
 pdb|3MEV|B Chain B, Crystal Structure Of Sgf29 In Complex With R2ak4me3
          Length = 180

 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 6   IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65
            + + L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A 
Sbjct: 115 FQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVAC 174

Query: 66  KK 67
           K+
Sbjct: 175 KE 176


>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing
           Protein Sgf29
          Length = 174

 Score = 81.6 bits (200), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 6   IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65
            + + L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A 
Sbjct: 109 FQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVAC 168

Query: 66  KK 67
           K+
Sbjct: 169 KE 170


>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3
          Length = 180

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 48/62 (77%)

Query: 6   IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65
            + + L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A 
Sbjct: 117 FQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVAC 176

Query: 66  KK 67
           K+
Sbjct: 177 KE 178


>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing Protein
           Sgf29
          Length = 159

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 46/59 (77%)

Query: 6   IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIA 64
            + + L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A
Sbjct: 100 FQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVA 158


>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
 pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
 pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
          Length = 522

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 12  LMALYPQTTCFYKAIVNSLPTTGT 35
           ++A YP+TT FY AIV      GT
Sbjct: 464 VLARYPETTTFYPAIVIGTKRDGT 487


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,154,574
Number of Sequences: 62578
Number of extensions: 75226
Number of successful extensions: 137
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 5
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)