BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy6948
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96ES7|SGF29_HUMAN SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1
           SV=1
          Length = 293

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 11  LLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 67
           L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 233 LVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKE 289


>sp|P0C606|SGF29_RAT SAGA-associated factor 29 homolog OS=Rattus norvegicus GN=Ccdc101
           PE=1 SV=1
          Length = 293

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 11  LLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 67
           L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 233 LVLALYPQTTCFYRALIHTPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKE 289


>sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2
           SV=1
          Length = 293

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 11  LLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 67
           L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 233 LVLALYPQTTCFYRALIHTPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKE 289


>sp|Q5ZL38|SGF29_CHICK SAGA-associated factor 29 homolog OS=Gallus gallus GN=CCDC101 PE=2
           SV=1
          Length = 293

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query: 11  LLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKKS 68
           L++ALYPQTTCFY+A++++ P    DDY +LFED SYAD Y+PPL V QRYV+A K++
Sbjct: 233 LVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKET 290


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,693,812
Number of Sequences: 539616
Number of extensions: 912528
Number of successful extensions: 1540
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1534
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)