Query psy6948
Match_columns 69
No_of_seqs 101 out of 142
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 22:49:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3038|consensus 100.0 3.1E-30 6.6E-35 190.2 7.2 66 3-68 196-261 (264)
2 PF07039 DUF1325: SGF29 tudor- 100.0 1.7E-30 3.7E-35 173.5 5.3 62 3-67 69-130 (130)
3 PF09465 LBR_tudor: Lamin-B re 98.5 3.1E-07 6.8E-12 54.8 4.6 45 1-46 1-45 (55)
4 cd04508 TUDOR Tudor domains ar 97.9 3.6E-05 7.8E-10 41.8 4.5 35 9-45 1-35 (48)
5 smart00333 TUDOR Tudor domain. 97.9 4.9E-05 1.1E-09 42.5 5.0 38 5-45 2-39 (57)
6 smart00743 Agenet Tudor-like d 97.2 0.0012 2.5E-08 37.7 4.9 38 5-44 2-39 (61)
7 PF15057 DUF4537: Domain of un 96.9 0.002 4.4E-08 42.6 4.8 48 9-65 1-48 (124)
8 PF09038 53-BP1_Tudor: Tumour 95.9 0.016 3.4E-07 39.4 4.2 49 8-65 5-53 (122)
9 PF11717 Tudor-knot: RNA bindi 95.7 0.016 3.5E-07 33.2 3.2 39 6-45 1-40 (55)
10 PF05641 Agenet: Agenet domain 94.9 0.055 1.2E-06 31.9 3.8 61 6-68 1-66 (68)
11 PF15057 DUF4537: Domain of un 94.7 0.13 2.9E-06 33.9 5.6 44 3-46 53-100 (124)
12 PF06003 SMN: Survival motor n 94.6 0.067 1.4E-06 39.3 4.4 41 4-45 67-107 (264)
13 PF00567 TUDOR: Tudor domain; 93.5 0.093 2E-06 31.3 2.9 41 3-45 49-89 (121)
14 PF08605 Rad9_Rad53_bind: Fung 92.8 0.15 3.3E-06 34.5 3.4 32 12-46 16-47 (131)
15 cd05162 PWWP The PWWP domain, 89.2 1.2 2.5E-05 26.8 4.5 39 6-45 1-47 (87)
16 PF00855 PWWP: PWWP domain; I 89.2 1.3 2.9E-05 25.9 4.7 40 6-46 1-45 (86)
17 smart00293 PWWP domain with co 87.2 2.4 5.3E-05 24.4 4.8 40 6-46 1-49 (63)
18 cd05837 MSH6_like The PWWP dom 83.3 4 8.6E-05 26.2 4.9 42 4-46 1-53 (110)
19 cd05834 HDGF_related The PWWP 82.4 5.8 0.00013 24.4 5.2 40 5-45 2-43 (83)
20 cd05836 N_Pac_NP60 The PWWP do 78.2 7.9 0.00017 23.9 4.8 40 6-46 1-46 (86)
21 cd05840 SPBC215_ISWI_like The 72.5 14 0.0003 23.2 4.9 40 6-46 1-51 (93)
22 cd05839 BR140_related The PWWP 70.9 11 0.00024 24.9 4.4 25 6-31 1-25 (111)
23 PF07039 DUF1325: SGF29 tudor- 70.6 12 0.00026 24.9 4.5 57 7-67 1-60 (130)
24 PLN00104 MYST -like histone ac 68.5 12 0.00027 30.1 4.9 41 4-44 52-97 (450)
25 cd06080 MUM1_like Mutated mela 61.2 33 0.00072 21.3 4.9 39 6-46 1-39 (80)
26 cd05838 WHSC1_related The PWWP 54.5 35 0.00076 21.3 4.3 52 7-65 2-62 (95)
27 cd05841 BS69_related The PWWP 50.8 60 0.0013 20.3 5.2 54 3-65 4-57 (83)
28 COG1137 YhbG ABC-type (unclass 46.0 38 0.00083 25.5 3.9 36 6-45 27-66 (243)
29 PF08940 DUF1918: Domain of un 42.2 28 0.0006 20.9 2.2 16 32-47 31-46 (58)
30 PF15584 Imm44: Immunity prote 39.7 26 0.00056 22.9 2.0 19 37-55 70-88 (94)
31 cd05835 Dnmt3b_related The PWW 34.9 1.1E+02 0.0023 18.7 4.6 39 6-45 1-44 (87)
32 KOG3026|consensus 31.8 51 0.0011 25.1 2.7 40 5-45 90-129 (262)
33 PF14977 FAM194: FAM194 protei 30.9 1.3E+02 0.0028 21.8 4.6 41 5-46 10-56 (208)
34 PF01562 Pep_M12B_propep: Repr 27.9 36 0.00079 21.4 1.2 15 18-32 76-90 (131)
35 TIGR02266 gmx_TIGR02266 Myxoco 27.6 1.3E+02 0.0029 17.4 4.2 44 4-47 35-85 (96)
36 PF12148 DUF3590: Protein of u 27.4 81 0.0018 20.1 2.7 35 12-46 2-41 (85)
37 KOG4525|consensus 27.0 49 0.0011 27.6 2.0 28 15-46 51-78 (614)
38 PF10008 DUF2251: Uncharacteri 26.8 44 0.00094 21.9 1.5 17 34-51 8-24 (97)
39 PF09912 DUF2141: Uncharacteri 24.9 1E+02 0.0023 19.6 3.0 16 7-22 9-24 (112)
40 PRK05396 tdh L-threonine 3-deh 23.4 61 0.0013 22.8 1.8 18 4-22 77-94 (341)
41 PF01082 Cu2_monooxygen: Coppe 23.3 1.1E+02 0.0023 19.9 2.8 30 16-45 13-42 (132)
42 PF08169 RBB1NT: RBB1NT (NUC16 23.3 53 0.0011 21.4 1.3 26 19-44 20-51 (96)
43 PF02513 Spin-Ssty: Spin/Ssty 22.5 84 0.0018 18.2 2.0 23 24-46 20-42 (50)
44 PF14998 Ripply: Transcription 20.5 3.4 7.3E-05 26.6 -4.6 18 7-24 59-78 (87)
No 1
>KOG3038|consensus
Probab=99.96 E-value=3.1e-30 Score=190.19 Aligned_cols=66 Identities=42% Similarity=0.789 Sum_probs=64.1
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEeeeCC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKKS 68 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k~~ 68 (69)
.++|++|++|||+||+|||||+|+||++|++++++|.|+|+|++++||++|++.|+|||||+||+.
T Consensus 196 ~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlffD~~ee~g~~pp~~V~~ryVva~~e~ 261 (264)
T KOG3038|consen 196 TALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFFDDEEEDGVSPPTEVARRYVVAFPEG 261 (264)
T ss_pred ccCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeeecCcccccCCCCceeeeEEEEecCcc
Confidence 468999999999999999999999999999999999999999999999999999999999999985
No 2
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=99.96 E-value=1.7e-30 Score=173.45 Aligned_cols=62 Identities=45% Similarity=0.777 Sum_probs=51.1
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEeeeC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 67 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k~ 67 (69)
.++|++|++||||||+|||||+|+|+++|++..+.|+|+||||++++|+ +.||+||||++|+
T Consensus 69 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~Fedd~~~~~~---~~V~~r~Vv~~p~ 130 (130)
T PF07039_consen 69 LAEFPKGTKVLALYPDTTCFYPATVVSPPKKKSGEYKLKFEDDEDADGY---REVPQRYVVAFPQ 130 (130)
T ss_dssp GGS--TT-EEEEE-TTSSEEEEEEEEEE-SSTTS-EEEEECTTTSTTSB---EEE-GGGEEE-H-
T ss_pred hhhCCCCCEEEEECCCCceEEEEEEEeCCCCCCCcEEEEEeCCCCcCCc---EEEccceEEccCC
Confidence 5689999999999999999999999999999999999999999999998 9999999999985
No 3
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=98.48 E-value=3.1e-07 Score=54.80 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=34.5
Q ss_pred CCCCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 1 MDGSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 1 ~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
|++.-|..|..|++.||++..||+|.|.+--.. ++.|.|+|+|-.
T Consensus 1 mp~~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~-~~~y~V~Y~DGt 45 (55)
T PF09465_consen 1 MPSRKFAIGEVVMVRWPGSSLYYEGKVLSYDSK-SDRYTVLYEDGT 45 (55)
T ss_dssp SSSSSS-SS-EEEEE-TTTS-EEEEEEEEEETT-TTEEEEEETTS-
T ss_pred CCcccccCCCEEEEECCCCCcEEEEEEEEeccc-CceEEEEEcCCC
Confidence 788999999999999999999999999994433 446999999843
No 4
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=97.88 E-value=3.6e-05 Score=41.77 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 9 KILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 9 g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
|+.|+|.|++...+|||+|.+... .+.|.|.|.|-
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~--~~~~~V~f~Dy 35 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS--DGKVEVFFVDY 35 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC--CCcEEEEEEcC
Confidence 789999999999999999999876 55699999994
No 5
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.86 E-value=4.9e-05 Score=42.47 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=34.4
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
.+..|+.|+|.| +-..+|||+|.+.... ..|.|.|.|.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~~~--~~~~V~f~D~ 39 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVDGE--QLYEVFFIDY 39 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEECCC--CEEEEEEECC
Confidence 578999999999 9999999999999866 5699999995
No 6
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.21 E-value=0.0012 Score=37.71 Aligned_cols=38 Identities=8% Similarity=0.183 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEcc
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 44 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeD 44 (69)
.|.+|+.|-|++++--++|+|+|..-.. .+.|.|.|.+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~--~~~~~V~~~~ 39 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG--DGKYLVRYLT 39 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC--CCEEEEEECC
Confidence 5899999999999999999999998876 4469999988
No 7
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=96.94 E-value=0.002 Score=42.56 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEee
Q psy6948 9 KILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 9 g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
|+.|||.....=-||+|+|.+.+ ..+.|.|+|++.. ...|+.+.+|..
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~--~~~~~lV~f~~~~-------~~~v~~~~iI~~ 48 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV--SSGQFLVEFDDGD-------TQEVPISDIIAL 48 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc--CCCEEEEEECCCC-------EEEeChHHeEEc
Confidence 79999999999999999999999 4556999994421 246666666654
No 8
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=95.90 E-value=0.016 Score=39.39 Aligned_cols=49 Identities=20% Similarity=0.474 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEee
Q psy6948 8 TKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 8 ~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
.|-+|+|.|=+-.-||.++|... .+...|.|.||| |+. ..|..+-+|.+
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~--~~~~kykv~FdD-----G~~--~~v~~~div~~ 53 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSD--KGKNKYKVLFDD-----GYE--CRVLGKDIVVC 53 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEE--ETTTEEEEEETT-----S-E--EEEECCCEEEE
T ss_pred cccEEEEEEccCCcccCceEeec--CCCCeEEEEecC-----Ccc--ceeccCcEEEE
Confidence 58899999997777799999985 455579999988 432 45655555544
No 9
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=95.72 E-value=0.016 Score=33.19 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCC-CCCCeEEEEccC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTT-GTDDYELLFEDN 45 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~-~~~~y~l~FeDd 45 (69)
|..|+.|++.+ ....+|+|+|...-.+ +...|-|.|++=
T Consensus 1 ~~vG~~v~~~~-~~~~~y~A~I~~~r~~~~~~~YyVHY~g~ 40 (55)
T PF11717_consen 1 FEVGEKVLCKY-KDGQWYEAKILDIREKNGEPEYYVHYQGW 40 (55)
T ss_dssp --TTEEEEEEE-TTTEEEEEEEEEEEECTTCEEEEEEETTS
T ss_pred CCcCCEEEEEE-CCCcEEEEEEEEEEecCCCEEEEEEcCCC
Confidence 57899999999 8999999999988643 345899999763
No 10
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=94.86 E-value=0.055 Score=31.94 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCC---CCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCC--CccccCcEEEeeeCC
Q psy6948 6 IETKILLMALYPQ---TTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAP--PLGVPQRYVIAYKKS 68 (69)
Q Consensus 6 f~~g~~VLAlYP~---TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp--~~~V~~ryVv~~k~~ 68 (69)
|.+|+.|=-+-=+ ..|.|+|+|.+..... .|.|++.|=.+++|..+ .-.|+.+.+=+++++
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~--~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD--KYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT---EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc--EEEEEECCcccccccccccEEEechheEECcCcC
Confidence 5677776555433 6899999999998665 69999998877777765 337777776665543
No 11
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=94.66 E-value=0.13 Score=33.85 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEcCC-CCceecEEEEcCCCC---CCCCeEEEEccCC
Q psy6948 3 GSTIETKILLMALYPQ-TTCFYKAIVNSLPTT---GTDDYELLFEDNS 46 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~-TT~FY~A~V~~~p~~---~~~~y~l~FeDd~ 46 (69)
-+.+..|+.|||..|. --+|++|+|.+.|.+ ....|.|+|-|..
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f~ng~ 100 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRFYNGK 100 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEEECCC
Confidence 3578999999999864 455889999987743 3448999998864
No 12
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=94.56 E-value=0.067 Score=39.31 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=29.8
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
..+.+|+.++|+|=+..++|+|+|.+--.. .+.+.|.|.+-
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~-~~~~~V~f~gY 107 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDEE-DGTCVVVFTGY 107 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEETT-TTEEEEEETTT
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcCC-CCEEEEEEccc
Confidence 468899999999999999999999987532 23599999873
No 13
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=93.52 E-value=0.093 Score=31.25 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
......|..++++++.-.++|||+|... ...+.+.|.|-|.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~w~Ra~I~~~--~~~~~~~V~~iD~ 89 (121)
T PF00567_consen 49 SPESNPGEGCLCVVSEDGRWYRAVITVD--IDENQYKVFLIDY 89 (121)
T ss_dssp CST--TTEEEEEEETTTSEEEEEEEEEE--ECTTEEEEEETTT
T ss_pred ccccccCCEEEEEEecCCceeeEEEEEe--cccceeEEEEEec
Confidence 3567789999999999999999999222 2455699999994
No 14
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=92.84 E-value=0.15 Score=34.49 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=24.3
Q ss_pred EEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 12 LMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 12 VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
|-|.| .-.||+|++.+.- ..+..|.|+|||..
T Consensus 16 vW~~~--~~~yYPa~~~~~~-~~~~~~~V~Fedg~ 47 (131)
T PF08605_consen 16 VWAGY--NLKYYPATCVGSG-VDRDRSLVRFEDGT 47 (131)
T ss_pred eeecC--CCeEeeEEEEeec-CCCCeEEEEEecCc
Confidence 34555 7899999999993 33445999999975
No 15
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=89.21 E-value=1.2 Score=26.85 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCCC--------CCCeEEEEccC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTTG--------TDDYELLFEDN 45 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~--------~~~y~l~FeDd 45 (69)
|+.|++|+|-..+ -.+.+|.|+.+.... .+.|.|+|=++
T Consensus 1 f~~GdlVwaK~~g-~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~ 47 (87)
T cd05162 1 FRPGDLVWAKMKG-YPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGD 47 (87)
T ss_pred CCCCCEEEEeCCC-CCCCCEEEccccccchhhhccCCCCEEEEEEeCC
Confidence 7899999999965 479999999998542 35899999874
No 16
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=89.19 E-value=1.3 Score=25.94 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCC-----CCCCCeEEEEccCC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPT-----TGTDDYELLFEDNS 46 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~-----~~~~~y~l~FeDd~ 46 (69)
|..|++|.|-..+ -.+.+|.|..++. ...+.|.|.|=++.
T Consensus 1 f~~GdlVWaK~~g-~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~ 45 (86)
T PF00855_consen 1 FRPGDLVWAKLKG-YPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN 45 (86)
T ss_dssp -STTEEEEEEETT-SEEEEEEEEECCHCTSCSSSSTEEEEEETTTT
T ss_pred CCCCCEEEEEeCC-CCCCceEEeecccccccCCCCCEEEEEecCCC
Confidence 6899999999954 4699999999973 34558999998864
No 17
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=87.18 E-value=2.4 Score=24.44 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCC---------CCCCeEEEEccCC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTT---------GTDDYELLFEDNS 46 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~---------~~~~y~l~FeDd~ 46 (69)
|+.|++|+|-..+ -...+|.|+..+.. ....|.|+|=++.
T Consensus 1 f~~GdlVwaK~~G-~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~ 49 (63)
T smart00293 1 FKPGDLVWAKMKG-FPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDK 49 (63)
T ss_pred CCCCCEEEEECCC-CCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCC
Confidence 6789999999874 34899999988732 2458999998864
No 18
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=83.31 E-value=4 Score=26.21 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=33.2
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCC-----------CCCCCeEEEEccCC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPT-----------TGTDDYELLFEDNS 46 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-----------~~~~~y~l~FeDd~ 46 (69)
..|..|++|.|-..+ -.+++|.|...|. .....|.|+|=++.
T Consensus 1 ~~~~~GdlVWaK~~g-~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~ 53 (110)
T cd05837 1 SKYQVGDLVWAKVSG-YPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDN 53 (110)
T ss_pred CCCCCCCEEEEeCCC-CCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCC
Confidence 368999999999986 5899999997653 23458999998764
No 19
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=82.44 E-value=5.8 Score=24.40 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=32.4
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCC--CCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPT--TGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~--~~~~~y~l~FeDd 45 (69)
.|.+|++|+|-. .-=-+.+|.|...+. .....|.|.|=++
T Consensus 2 ~f~~GdlVwaK~-kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt 43 (83)
T cd05834 2 QFKAGDLVFAKV-KGYPAWPARVDEPEDWKPPGKKYPVYFFGT 43 (83)
T ss_pred CCCCCCEEEEec-CCCCCCCEEEecccccCCCCCEEEEEEeCC
Confidence 689999999997 345578999999984 3445799999886
No 20
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=78.17 E-value=7.9 Score=23.89 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCC------CCCCeEEEEccCC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTT------GTDDYELLFEDNS 46 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~------~~~~y~l~FeDd~ 46 (69)
|..|++|.|-.. -=...+|.|..++.. ..+.|.|.|-++.
T Consensus 1 f~~GDlVwaK~~-g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~ 46 (86)
T cd05836 1 LKLGDLVWAKMK-GFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSE 46 (86)
T ss_pred CCCCCEEEEeCC-CCCCCCEEEechhhhcccccCCCCeEEEEEeCCC
Confidence 678999999986 456788999987632 2357999998864
No 21
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=72.51 E-value=14 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcC-----------CCCCCCCeEEEEccCC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSL-----------PTTGTDDYELLFEDNS 46 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~-----------p~~~~~~y~l~FeDd~ 46 (69)
|..|++|+|--. .--..+|.|+.+ ++...+.|.|+|=++.
T Consensus 1 f~~GDlVwaK~~-GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~ 51 (93)
T cd05840 1 FQPGDRVLAKVK-GFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDG 51 (93)
T ss_pred CCCCCEEEEeCC-CCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCC
Confidence 678999999876 445789999874 2344568999998763
No 22
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=70.90 E-value=11 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=20.9
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLP 31 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p 31 (69)
+++|++|.|-- ..--+|+|.|+.++
T Consensus 1 ~~pg~lVwaK~-~g~P~wPa~iidp~ 25 (111)
T cd05839 1 LEPLTLVWAKC-RGYPSYPALIIDPK 25 (111)
T ss_pred CCCcCEeeeee-cCCCCCCeEeeCCC
Confidence 47899999987 66678999999876
No 23
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=70.58 E-value=12 Score=24.90 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=40.2
Q ss_pred CCCCEEEEEcC---CCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEeeeC
Q psy6948 7 ETKILLMALYP---QTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 67 (69)
Q Consensus 7 ~~g~~VLAlYP---~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k~ 67 (69)
++|+.|-|.-+ +...+=-|+|++--..+ ..|.|+=.|+++ + .....++++.||+++.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~~~-~rYeV~D~d~~~--~-~~~~~~~~~~iIPLP~ 60 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNSDG-NRYEVEDPDPEE--E-KKRYKLSRKQIIPLPK 60 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEETTT-TEEEEEETTTCT--T-TEEEEEEGGGEEEE-S
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeCCC-CEEEEecCCCCC--C-CceEEeCHHHEEECCC
Confidence 58999999887 47888999999877655 568886555432 1 1245899999999986
No 24
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=68.52 E-value=12 Score=30.10 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=33.3
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCC-----CCCeEEEEcc
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTG-----TDDYELLFED 44 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~-----~~~y~l~FeD 44 (69)
..|.+|++|+|...+.-.+|.|+|+..-... .-.|-|.|++
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g 97 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTE 97 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEec
Confidence 3589999999999999999999998876422 2258898885
No 25
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=61.24 E-value=33 Score=21.30 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
|..|+.|-|-.-+=- +.+|.|.+.... ...|.|.|=+|.
T Consensus 1 f~~gdlVWaK~~g~P-~WPa~I~~~~~~-~~k~~V~FfG~~ 39 (80)
T cd06080 1 FEKNDLVWAKIQGYP-WWPAVIKSISRK-KQKARVNFIGDN 39 (80)
T ss_pred CCCCCEEEEeCCCCC-CCCEEEeeecCC-CCEEEEEEeCCC
Confidence 678999999865433 468999887654 557999998875
No 26
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=54.54 E-value=35 Score=21.30 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=35.5
Q ss_pred CCCCEEEEEcCCCCceecEEEEcCCCC---------CCCCeEEEEccCCCCCCCCCCccccCcEEEee
Q psy6948 7 ETKILLMALYPQTTCFYKAIVNSLPTT---------GTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 7 ~~g~~VLAlYP~TT~FY~A~V~~~p~~---------~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
..|++|.|-+.+ --+.+|.|..+... ..+.+.|.|=++. .| -.|..+.+.++
T Consensus 2 ~~GdlVWaK~~g-~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~---~y---~Wv~~~~l~pf 62 (95)
T cd05838 2 LYGDIVWAKLGN-FRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTH---DY---YWVHRGRVFPY 62 (95)
T ss_pred CcCCEEEEECCC-CCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCC---CE---EEeccccccch
Confidence 469999999988 77899999976421 2357999998752 11 24555555554
No 27
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=50.79 E-value=60 Score=20.31 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=37.5
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEee
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
.|.+++|++|.|-.-+ --+.+|.|..... ..|.|.|=+.+.+- -.|+.+-+.++
T Consensus 4 ~pc~~p~dLVwAK~kG-yp~WPAkV~~~~~---~~~~V~FFG~t~~~-----a~v~~~~i~~~ 57 (83)
T cd05841 4 EPCRPPHELVWAKLKG-FPYWPAKVMRVED---NQVDVRFFGGQHDR-----AWIPSNNIQPI 57 (83)
T ss_pred cccCCCCCEEEEeCCC-CCCCCEEEeecCC---CeEEEEEcCCCCCe-----EEEehHHeeeh
Confidence 4788999999998766 3468999998754 46999997743222 25555555444
No 28
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=46.00 E-value=38 Score=25.49 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=27.7
Q ss_pred CCCCCEEEEEcCC----CCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 6 IETKILLMALYPQ----TTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 6 f~~g~~VLAlYP~----TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
+.+|..|==|=|+ |||||-.+=...|..+ ++.++|.
T Consensus 27 v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G----~i~ld~~ 66 (243)
T COG1137 27 VNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSG----KILLDDE 66 (243)
T ss_pred EcCCcEEEEECCCCCCceeEEEEEEEEEecCCc----eEEECCc
Confidence 4577887777787 9999999888888766 4667664
No 29
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=42.23 E-value=28 Score=20.91 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=10.4
Q ss_pred CCCCCCeEEEEccCCC
Q psy6948 32 TTGTDDYELLFEDNSY 47 (69)
Q Consensus 32 ~~~~~~y~l~FeDd~~ 47 (69)
..+..-|.|+|+|+..
T Consensus 31 ~dG~PPY~VRw~D~Gh 46 (58)
T PF08940_consen 31 PDGSPPYLVRWDDTGH 46 (58)
T ss_dssp SSS-S-EEEEETTTTE
T ss_pred CCCCCCEEEEecCCCc
Confidence 3455689999999643
No 30
>PF15584 Imm44: Immunity protein 44
Probab=39.71 E-value=26 Score=22.94 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=16.7
Q ss_pred CeEEEEccCCCCCCCCCCc
Q psy6948 37 DYELLFEDNSYADNYAPPL 55 (69)
Q Consensus 37 ~y~l~FeDd~~~dG~sp~~ 55 (69)
..+|.|||+-|+||..|.-
T Consensus 70 ~WRLiWeD~RY~DGtIP~E 88 (94)
T PF15584_consen 70 RWRLIWEDKRYEDGTIPDE 88 (94)
T ss_pred EEEEEEecccccCCCCCcc
Confidence 6899999999999987753
No 31
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=34.92 E-value=1.1e+02 Score=18.65 Aligned_cols=39 Identities=10% Similarity=-0.004 Sum_probs=28.9
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCCC-----CCCeEEEEccC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTTG-----TDDYELLFEDN 45 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~-----~~~y~l~FeDd 45 (69)
|..|++|.|--.+ -...+|.|+..+... .+.|.|.|=++
T Consensus 1 f~vGDlVWaK~kg-~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs 44 (87)
T cd05835 1 FNVGDLVWGKIKG-FPWWPGRVVSITVTSKRPPVVGMRWVTWFGS 44 (87)
T ss_pred CCCCCEEEEecCC-CCCCCeEEechhhcccccCCCCeEEEEEeCC
Confidence 6789999998633 337899999886432 34799999875
No 32
>KOG3026|consensus
Probab=31.78 E-value=51 Score=25.08 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
.|++|++|.|.|++---.|-|+|..--.- .....+.|+..
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~-~~~~ai~f~s~ 129 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAM-EGTVAIIFASY 129 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCC-CCceeEEEeec
Confidence 69999999999999999999998765431 23456777653
No 33
>PF14977 FAM194: FAM194 protein
Probab=30.88 E-value=1.3e+02 Score=21.83 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEcCCCCc--eec----EEEEcCCCCCCCCeEEEEccCC
Q psy6948 5 TIETKILLMALYPQTTC--FYK----AIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~--FY~----A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
.++.|.+.+-++||=|+ ||+ |+...+...++ .+.+-|||.+
T Consensus 10 ~Y~~g~~f~~~f~DGsg~i~YPSGnlAi~~~~~~~~~-~~~~v~eD~~ 56 (208)
T PF14977_consen 10 YYKNGRKFHYMFPDGSGQIFYPSGNLAICISPTCRGG-FTYIVYEDSP 56 (208)
T ss_pred eCCCCcEEEEEcCCCCEEEEeCCCCEEEEEeccCCCc-eEEEEEecCC
Confidence 57889999999999654 676 78877774433 6778888875
No 34
>PF01562 Pep_M12B_propep: Reprolysin family propeptide; InterPro: IPR002870 This signature covers the region of the propeptide for members of the MEROPS peptidase family M12B (clan MA(M), adamalysin family). The propeptide contains a sequence motif similar to the "cysteine switch" of the matrixins, which mediate cell-cell or cell-matrix interactions.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis
Probab=27.93 E-value=36 Score=21.38 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=13.4
Q ss_pred CCCceecEEEEcCCC
Q psy6948 18 QTTCFYKAIVNSLPT 32 (69)
Q Consensus 18 ~TT~FY~A~V~~~p~ 32 (69)
+..|||++.|...|.
T Consensus 76 ~~~c~Y~G~V~g~~~ 90 (131)
T PF01562_consen 76 QEHCHYQGHVEGDPG 90 (131)
T ss_pred ccceEEEeeeCCCCC
Confidence 489999999999985
No 35
>TIGR02266 gmx_TIGR02266 Myxococcus xanthus paralogous domain TIGR02266. This domain is related to Type IV pilus assembly protein PilZ (Pfam model pfam07238). It is found in at least 12 copies in Myxococcus xanthus DK 1622.
Probab=27.64 E-value=1.3e+02 Score=17.42 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCCCCCEEEEEc--CC-C-CceecEEEEcCCCCCCC---CeEEEEccCCC
Q psy6948 4 STIETKILLMALY--PQ-T-TCFYKAIVNSLPTTGTD---DYELLFEDNSY 47 (69)
Q Consensus 4 ~~f~~g~~VLAlY--P~-T-T~FY~A~V~~~p~~~~~---~y~l~FeDd~~ 47 (69)
..++.|+.|...+ |+ . .---.|+|+.......+ .|-|+|.+.+.
T Consensus 35 ~~~~~g~~v~l~l~l~~~~~~i~~~g~Vv~~~~~~~~~~~~~Gv~F~~~~~ 85 (96)
T TIGR02266 35 KPLAVGTRVELKLTLPGGERPVELKGVVAWVRPAADGGPPGMGVRFEDLDA 85 (96)
T ss_pred CCcCCCCEEEEEEEcCCCCeEEEEEEEEEEeCCCCCCCCCeeEEEeccCCH
Confidence 4678898886666 44 2 22347888777654433 58999998754
No 36
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=27.37 E-value=81 Score=20.09 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=24.5
Q ss_pred EEEEcCCCCceecEEEEcCCCCCC-----CCeEEEEccCC
Q psy6948 12 LMALYPQTTCFYKAIVNSLPTTGT-----DDYELLFEDNS 46 (69)
Q Consensus 12 VLAlYP~TT~FY~A~V~~~p~~~~-----~~y~l~FeDd~ 46 (69)
|=|.-..+.+.+.|.|+..-++.. -.|.++|||..
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddyp 41 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYP 41 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-G
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCC
Confidence 457778889999999987765432 27999999875
No 37
>KOG4525|consensus
Probab=26.97 E-value=49 Score=27.63 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.3
Q ss_pred EcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 15 LYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 15 lYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
-||.+-.|+||++++.|- +.+|+|+-|+
T Consensus 51 t~p~h~~~fkat~~~~pG----enkllF~td~ 78 (614)
T KOG4525|consen 51 TLPEHLSQFKATQLSAPG----ENKLLFDTDQ 78 (614)
T ss_pred cchhhhhhhheeEEecCC----cceEEEEcCC
Confidence 378899999999999983 4689998764
No 38
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.81 E-value=44 Score=21.92 Aligned_cols=17 Identities=29% Similarity=0.634 Sum_probs=12.5
Q ss_pred CCCCeEEEEccCCCCCCC
Q psy6948 34 GTDDYELLFEDNSYADNY 51 (69)
Q Consensus 34 ~~~~y~l~FeDd~~~dG~ 51 (69)
..+.|.+-||||.+ -||
T Consensus 8 ~~~~~~vVFEDdGe-TGY 24 (97)
T PF10008_consen 8 PHGPYAVVFEDDGE-TGY 24 (97)
T ss_pred CCCCEEEEEEeCCC-cEE
Confidence 45679999999863 455
No 39
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=24.93 E-value=1e+02 Score=19.58 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.1
Q ss_pred CCCCEEEEEcCCCCce
Q psy6948 7 ETKILLMALYPQTTCF 22 (69)
Q Consensus 7 ~~g~~VLAlYP~TT~F 22 (69)
.+|+..++||.+-..|
T Consensus 9 ~~G~v~v~ly~~~~~f 24 (112)
T PF09912_consen 9 DKGQVRVALYNSAEGF 24 (112)
T ss_pred CCcEEEEEEEcChhch
Confidence 5899999999997777
No 40
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=23.38 E-value=61 Score=22.82 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=13.7
Q ss_pred CCCCCCCEEEEEcCCCCce
Q psy6948 4 STIETKILLMALYPQTTCF 22 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~F 22 (69)
..|..|+.|+|+ |.++|+
T Consensus 77 ~~~~~Gd~V~~~-~~~~~~ 94 (341)
T PRK05396 77 TGFKVGDRVSGE-GHIVCG 94 (341)
T ss_pred CcCCCCCEEEEC-CCCCCC
Confidence 467889999988 666664
No 41
>PF01082 Cu2_monooxygen: Copper type II ascorbate-dependent monooxygenase, N-terminal domain; InterPro: IPR000323 Copper type II, ascorbate-dependent monooxygenases [] are a class of enzymes that requires copper as a cofactor and which uses ascorbate as an electron donor. This family contains two related enzymes, Dopamine-beta-monooxygenase (1.14.17.1 from EC) and Peptidyl-glycine alpha-amidating monooxygenase (1.14.17.3 from EC). There are a few regions of sequence similarities between these two enzymes, two of these regions contain clusters of conserved histidine residues which are most probably involved in binding copper.; GO: 0004497 monooxygenase activity, 0005507 copper ion binding, 0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen, 0055114 oxidation-reduction process; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=23.34 E-value=1.1e+02 Score=19.91 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=18.3
Q ss_pred cCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 16 YPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 16 YP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
-|...+.|...+...|....+.+.++||--
T Consensus 13 vP~~~t~Y~C~~~~lp~~~~~~hIi~~ep~ 42 (132)
T PF01082_consen 13 VPSQDTTYWCFVFKLPDLTEKHHIIGFEPI 42 (132)
T ss_dssp --SSSSEEEEEEEE-S-S-S-EEEEEEEEE
T ss_pred cCCCCCeEEEEEEECCcccccceEEEeeee
Confidence 366677888888888876566678888653
No 42
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=23.25 E-value=53 Score=21.38 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=13.4
Q ss_pred CCceecEEEEcCCCC-----CCCCeEE-EEcc
Q psy6948 19 TTCFYKAIVNSLPTT-----GTDDYEL-LFED 44 (69)
Q Consensus 19 TT~FY~A~V~~~p~~-----~~~~y~l-~FeD 44 (69)
-+++|+|.|++|--. +.+.|.| .|-|
T Consensus 20 k~~W~PALVVsPsc~ddv~VkKD~~lVRSFkD 51 (96)
T PF08169_consen 20 KTSWFPALVVSPSCNDDVTVKKDQCLVRSFKD 51 (96)
T ss_dssp SS-EEEEEEE--SS-SS----TT-EEEEESSS
T ss_pred CCceeeEEEEcCCccceeeeccceEEEEEecc
Confidence 468999999997532 2345666 3544
No 43
>PF02513 Spin-Ssty: Spin/Ssty Family; InterPro: IPR003671 Spindlin (Spin) and Ssty were first identified for their involvement in gametogenesis. Spindlin was identified as a maternal transcript present in the unfertilised egg and early embryo, and was subsequently shown to interact with the spindle apparatus during oogenesis, and may therefore be important for mitosis []. In addition, spindlin appears to be a target for cell cycle-dependent phosphorylation, and as such may play a role in cell cycle regulation during the transition from gamete to embryo []. Ssty is a multi-copy, Y-linked spermatogenesis-specific transcript that appears to be required for normal spermatogenesis []. Ssty may play an analogous role to spindlin in sperm cells, namely during the transition from sperm cells to early embryo, and in mitosis.; GO: 0007276 gamete generation; PDB: 2NS2_A.
Probab=22.48 E-value=84 Score=18.22 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=14.3
Q ss_pred cEEEEcCCCCCCCCeEEEEccCC
Q psy6948 24 KAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 24 ~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
+++|...-+....-|-++||+|.
T Consensus 20 ~G~Vl~Qvp~~ps~y~Ikyd~d~ 42 (50)
T PF02513_consen 20 KGMVLHQVPAKPSLYYIKYDGDD 42 (50)
T ss_dssp EEEEEEE-TTSTTEEEEEETTES
T ss_pred EEEEEEEeecCCcEEEEEECCCc
Confidence 45555444444457999999974
No 44
>PF14998 Ripply: Transcription Regulator
Probab=20.53 E-value=3.4 Score=26.64 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=11.3
Q ss_pred CCCCEEEEEcCC--CCceec
Q psy6948 7 ETKILLMALYPQ--TTCFYK 24 (69)
Q Consensus 7 ~~g~~VLAlYP~--TT~FY~ 24 (69)
+.|..||+=||= |.|||.
T Consensus 59 ~~gE~lL~nFPVQATI~fY~ 78 (87)
T PF14998_consen 59 SEGEKLLANFPVQATIHFYE 78 (87)
T ss_pred HHHHHHHHcCCceeEEEecc
Confidence 446667777774 666663
Done!