Query psy6948
Match_columns 69
No_of_seqs 101 out of 142
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 22:49:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mea_A SAGA-associated factor 100.0 8.5E-34 2.9E-38 198.3 7.4 66 3-68 114-179 (180)
2 3mp6_A MBP, SGF29, maltose-bin 99.9 3.2E-24 1.1E-28 159.5 5.9 61 2-67 454-514 (522)
3 2l8d_A Lamin-B receptor; DNA b 98.5 1.5E-07 5.1E-12 57.1 4.4 45 1-46 5-49 (66)
4 2dig_A Lamin-B receptor; tudor 98.4 1.9E-07 6.6E-12 56.9 4.0 45 1-46 8-52 (68)
5 1mhn_A SurviVal motor neuron p 97.9 2.2E-05 7.6E-10 44.7 4.8 40 4-44 2-41 (59)
6 3p8d_A Medulloblastoma antigen 97.8 2.9E-05 9.8E-10 46.7 4.9 39 3-44 4-42 (67)
7 2equ_A PHD finger protein 20-l 97.8 5.8E-05 2E-09 45.7 5.5 39 4-45 8-46 (74)
8 3qii_A PHD finger protein 20; 97.8 4E-05 1.4E-09 48.1 4.7 39 3-44 19-57 (85)
9 2g3r_A Tumor suppressor P53-bi 97.7 3.2E-05 1.1E-09 51.5 3.7 49 7-64 6-54 (123)
10 3s6w_A Tudor domain-containing 97.6 0.00011 3.8E-09 40.9 5.1 39 6-45 2-40 (54)
11 4hcz_A PHD finger protein 1; p 97.6 0.0001 3.5E-09 43.6 4.9 41 4-46 2-42 (58)
12 2e5p_A Protein PHF1, PHD finge 97.6 0.0001 3.6E-09 44.8 4.7 43 2-46 6-48 (68)
13 4a4f_A SurviVal of motor neuro 97.5 0.00022 7.5E-09 41.2 5.1 42 3-45 6-47 (64)
14 1g5v_A SurviVal motor neuron p 97.3 0.00035 1.2E-08 43.3 4.8 42 3-45 8-49 (88)
15 2d9t_A Tudor domain-containing 97.3 0.00056 1.9E-08 41.0 5.5 41 4-45 8-48 (78)
16 2ldm_A Uncharacterized protein 96.4 3.8E-05 1.3E-09 47.6 0.0 37 5-44 6-42 (81)
17 2eqj_A Metal-response element- 97.3 0.00039 1.3E-08 42.0 4.4 39 5-46 13-52 (66)
18 3pnw_C Tudor domain-containing 97.2 0.00046 1.6E-08 41.5 4.6 42 3-45 15-56 (77)
19 2xk0_A Polycomb protein PCL; t 97.2 0.00091 3.1E-08 40.7 5.7 40 3-46 13-52 (69)
20 2e5q_A PHD finger protein 19; 97.1 0.0015 5E-08 39.2 5.8 41 4-46 6-46 (63)
21 2fhd_A RAD9 homolog, DNA repai 97.0 0.00063 2.2E-08 46.7 4.2 44 1-46 3-50 (153)
22 3fdr_A Tudor and KH domain-con 97.0 0.0014 4.7E-08 39.5 5.1 39 5-45 27-65 (94)
23 3dlm_A Histone-lysine N-methyl 97.0 0.001 3.6E-08 47.4 5.2 40 5-44 68-110 (213)
24 2diq_A Tudor and KH domain-con 96.8 0.0026 8.9E-08 39.3 5.0 39 5-45 32-70 (110)
25 1ssf_A Transformation related 96.6 0.0026 8.9E-08 43.7 4.7 38 6-45 9-46 (156)
26 2m0o_A PHD finger protein 1; t 96.4 0.004 1.4E-07 38.7 4.0 42 3-46 24-65 (79)
27 3ntk_A Maternal protein tudor; 96.2 0.0085 2.9E-07 39.4 5.1 39 5-45 47-85 (169)
28 2wac_A CG7008-PA; unknown func 95.5 0.019 6.5E-07 37.8 4.5 38 5-45 51-88 (218)
29 4b9w_A TDRD1, tudor domain-con 95.3 0.04 1.4E-06 36.8 5.5 39 5-45 65-103 (201)
30 4b9x_A TDRD1, tudor domain-con 94.6 0.04 1.4E-06 37.5 4.2 39 5-45 65-103 (226)
31 2lcc_A AT-rich interactive dom 94.2 0.024 8.2E-07 34.0 2.1 43 2-44 2-47 (76)
32 2qqr_A JMJC domain-containing 93.8 0.05 1.7E-06 35.5 3.2 43 4-49 4-46 (118)
33 3m9q_A Protein MALE-specific l 93.7 0.065 2.2E-06 34.1 3.5 56 3-64 17-83 (101)
34 2eko_A Histone acetyltransfera 93.6 0.069 2.4E-06 33.0 3.4 43 3-45 7-53 (87)
35 2xdp_A Lysine-specific demethy 93.0 0.018 6.1E-07 37.9 0.0 43 4-49 5-47 (123)
36 2hqx_A P100 CO-activator tudor 92.7 0.12 4E-06 35.1 3.8 38 5-45 65-102 (246)
37 3sd4_A PHD finger protein 20; 92.4 0.29 1E-05 28.2 4.7 41 3-45 10-50 (69)
38 1wgs_A MYST histone acetyltran 92.3 0.15 5E-06 33.3 3.8 41 3-44 10-53 (133)
39 3oa6_A MALE-specific lethal 3 91.5 0.21 7.1E-06 32.2 3.7 41 4-44 18-67 (110)
40 2f5k_A MORF-related gene 15 is 90.7 0.26 9.1E-06 31.2 3.6 40 3-44 20-60 (102)
41 3dlm_A Histone-lysine N-methyl 90.6 0.2 6.8E-06 35.6 3.2 40 5-45 8-48 (213)
42 3m9p_A MALE-specific lethal 3 90.0 0.31 1.1E-05 31.4 3.5 56 4-65 18-84 (110)
43 2lrq_A Protein MRG15, NUA4 com 89.1 0.066 2.3E-06 32.7 0.0 40 3-44 10-50 (85)
44 2ro0_A Histone acetyltransfera 89.2 0.72 2.5E-05 28.5 4.6 39 4-44 22-61 (92)
45 3bdl_A Staphylococcal nuclease 89.0 0.39 1.3E-05 36.7 3.9 38 5-45 411-448 (570)
46 1ri0_A Hepatoma-derived growth 86.4 2.4 8.2E-05 26.4 5.8 43 2-45 16-62 (110)
47 3e9g_A Chromatin modification- 84.9 2.7 9.2E-05 27.9 5.8 25 4-30 6-30 (130)
48 2rnz_A Histone acetyltransfera 84.1 0.99 3.4E-05 28.2 3.2 39 4-44 24-63 (94)
49 2eqk_A Tudor domain-containing 83.1 2.1 7.2E-05 26.4 4.4 38 5-44 21-58 (85)
50 2gfu_A DNA mismatch repair pro 79.7 2.9 9.9E-05 26.5 4.3 58 3-66 20-85 (134)
51 2daq_A WHSC1L1 protein, isofor 78.6 3 0.0001 25.4 3.9 43 2-45 5-56 (110)
52 3qby_A Hepatoma-derived growth 78.4 8.5 0.00029 23.1 6.0 41 4-45 4-48 (94)
53 4fu6_A PC4 and SFRS1-interacti 77.0 4.9 0.00017 25.9 4.8 55 4-65 21-79 (153)
54 3l42_A Peregrin; transcription 76.1 7.9 0.00027 25.3 5.7 58 2-66 2-89 (130)
55 2eqm_A PHD finger protein 20-l 76.1 5.8 0.0002 23.9 4.7 41 3-45 17-57 (88)
56 3h8z_A FragIle X mental retard 75.7 2.7 9.3E-05 27.3 3.3 36 20-63 15-50 (128)
57 1h3z_A Hypothetical 62.8 kDa p 74.4 7.6 0.00026 23.6 5.0 56 3-65 4-70 (109)
58 3llr_A DNA (cytosine-5)-methyl 73.6 8.2 0.00028 25.6 5.4 58 2-66 13-75 (154)
59 3ask_A E3 ubiquitin-protein li 72.9 5 0.00017 28.4 4.4 42 5-46 2-51 (226)
60 3pfs_A Bromodomain and PHD fin 71.0 17 0.00059 24.4 6.5 58 3-66 34-120 (158)
61 1khc_A DNA cytosine-5 methyltr 69.2 12 0.00041 24.4 5.3 43 2-45 8-55 (147)
62 2qqr_A JMJC domain-containing 66.4 4.7 0.00016 26.0 2.8 50 7-66 65-114 (118)
63 2xdp_A Lysine-specific demethy 62.2 5.3 0.00018 25.9 2.5 37 7-46 66-102 (123)
64 2w4y_A Caulobacter 5 virus-lik 58.2 7.1 0.00024 25.2 2.5 50 15-65 33-88 (122)
65 3mp6_A MBP, SGF29, maltose-bin 56.6 15 0.00051 26.9 4.4 61 5-67 387-451 (522)
66 2k3y_A Chromatin modification- 56.1 12 0.00042 24.6 3.5 26 4-31 8-33 (136)
67 2yrv_A AT-rich interactive dom 53.0 22 0.00075 23.1 4.2 48 11-65 15-70 (117)
68 2l89_A PWWP domain-containing 50.6 15 0.00053 22.4 3.1 43 2-45 2-53 (108)
69 3db3_A E3 ubiquitin-protein li 44.1 32 0.0011 23.4 4.1 43 4-46 9-68 (161)
70 2bud_A Males-absent on the fir 31.1 54 0.0019 20.2 3.4 36 8-44 17-56 (92)
71 1wjq_A KIAA1798 protein; MBT d 30.6 99 0.0034 19.2 4.9 42 3-47 11-53 (107)
72 4dxt_A SUN domain-containing p 27.5 15 0.0005 25.0 0.3 15 17-31 182-196 (198)
73 3qr8_A GPV, baseplate assembly 26.0 93 0.0032 20.6 4.1 40 6-45 61-107 (211)
74 2gia_B MRP1, mitochondrial RNA 24.8 44 0.0015 23.0 2.3 21 24-44 109-129 (187)
75 2biv_A SCML2 protein, sex COMB 24.3 97 0.0033 21.5 4.1 41 3-46 60-101 (243)
76 2r58_A Polycomb protein SCM; M 20.4 1.4E+02 0.0048 21.1 4.3 41 3-46 32-73 (265)
77 1x6g_A Megakaryocyte-associate 20.2 67 0.0023 17.8 2.1 19 1-19 9-27 (81)
No 1
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=100.00 E-value=8.5e-34 Score=198.26 Aligned_cols=66 Identities=53% Similarity=1.006 Sum_probs=61.1
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEeeeCC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKKS 68 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k~~ 68 (69)
..+|++|++||||||||||||+|+|+++|++++++|+|+||||+|+||++|++.|+|||||+|||+
T Consensus 114 ~~~f~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde~~dG~sp~~~V~~RyVv~~ke~ 179 (180)
T 3mea_A 114 EALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEP 179 (180)
T ss_dssp GGSCCTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTTSTTSBCCCEEECGGGEEEC---
T ss_pred cccCCCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCCccCCCCCCcEecceEEEccCCC
Confidence 357999999999999999999999999999999999999999999999999999999999999986
No 2
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.90 E-value=3.2e-24 Score=159.55 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=51.7
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEeeeC
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 67 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k~ 67 (69)
+.+.|++|++||||||||||||||+|+++|++ ++|+|+||||++ .++.+.|++||||+++.
T Consensus 454 ~~~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~--~~~~~~f~~~~~---~~~~~~~~~~~v~~~~~ 514 (522)
T 3mp6_A 454 PTKNYPPGTKVLARYPETTTFYPAIVIGTKRD--GTCRLRFDGEEE---VDKETEVTRRLVLPSPT 514 (522)
T ss_dssp CCCCCCTTCEEEEECTTCSEEEEEEEEEECTT--SCEEEEETTC-------CCEEECGGGEEECHH
T ss_pred cccCCCCCCEEEEECCCCcceEeEEEecCCCC--CeEEEEecCCCC---CCccccccceeEEecCc
Confidence 35789999999999999999999999998866 469999999854 35788999999999874
No 3
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=98.49 E-value=1.5e-07 Score=57.15 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=40.3
Q ss_pred CCCCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 1 MDGSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 1 ~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
|+...|+.|+.|||.||+...||+|.|.+-- .....|.|+|-|+.
T Consensus 5 mp~~~~~vgd~VmaRW~Gd~~yYparI~Si~-s~~~~Y~V~fKdgT 49 (66)
T 2l8d_A 5 MPNRKYADGEVVMGRWPGSVLYYEVQVTSYD-DASHLYTVKYKDGT 49 (66)
T ss_dssp CSSSSSCSSCEEEEECTTSSCEEEEEEEEEE-TTTTEEEEEETTSC
T ss_pred CCceEeecCCEEEEEcCCCccceEEEEEEec-cCCceEEEEecCCC
Confidence 7888999999999999999999999999887 44568999999954
No 4
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=98.44 E-value=1.9e-07 Score=56.91 Aligned_cols=45 Identities=13% Similarity=0.326 Sum_probs=40.2
Q ss_pred CCCCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 1 MDGSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 1 ~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
|....|+.|+.|||.||+...||+|.|.+-- .....|.|+|.|+.
T Consensus 8 mp~~~f~vgd~VmaRW~Gd~~yYparItSit-s~~~~Y~VkfKdgT 52 (68)
T 2dig_A 8 MPSRKFADGEVVRGRWPGSSLYYEVEILSHD-STSQLYTVKYKDGT 52 (68)
T ss_dssp SCCCSSCSSCEEEEECTTTCCEEEEEEEEEE-TTTTEEEEECTTSC
T ss_pred CCceEeecCCEEEEEccCCccceEEEEEEec-cCCceEEEEecCCC
Confidence 7788999999999999999999999999887 44568999999954
No 5
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.89 E-value=2.2e-05 Score=44.69 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEcc
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 44 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeD 44 (69)
..|++|+.|||.|.+--+||||+|.+.... .+.|.|.|.|
T Consensus 2 ~~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~-~~~~~V~f~D 41 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDGCIYPATIASIDFK-RETCVVVYTG 41 (59)
T ss_dssp CCCCTTCEEEEECTTTSCEEEEEEEEEETT-TTEEEEEETT
T ss_pred CcCCcCCEEEEEECCCCCEEEEEEEEEcCC-CCEEEEEEEc
Confidence 358999999999998889999999987432 3569999987
No 6
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.84 E-value=2.9e-05 Score=46.70 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=33.6
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEcc
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 44 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeD 44 (69)
.+.|..|+.|||.| .=-.||+|+|.+--.. +.|.|+|.|
T Consensus 4 ~~~~~vGd~vmArW-~D~~yYpA~I~si~~~--~~Y~V~F~d 42 (67)
T 3p8d_A 4 SSEFQINEQVLACW-SDCRFYPAKVTAVNKD--GTYTVKFYD 42 (67)
T ss_dssp -CCCCTTCEEEEEC-TTSCEEEEEEEEECTT--SEEEEEETT
T ss_pred CcccccCCEEEEEc-CCCCEeeEEEEEECCC--CeEEEEEeC
Confidence 36899999999999 7778999999988755 459999987
No 7
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.77 E-value=5.8e-05 Score=45.67 Aligned_cols=39 Identities=13% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
..+.+|+.|||.|. --.||+|+|.+-... +.|.|.|+|-
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~--~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKE--GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTT--SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCC--CEEEEEEecC
Confidence 47899999999999 678999999998644 4699999873
No 8
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.75 E-value=4e-05 Score=48.07 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=32.7
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEcc
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 44 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeD 44 (69)
.+.|..|+.|||.| .=--||+|+|.+--.. +.|.|+|.|
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~--~~YtV~F~D 57 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNKD--GTYTVKFYD 57 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECTT--SEEEEEETT
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECCC--CeEEEEEeC
Confidence 35899999999999 7778999999988755 459999987
No 9
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=97.68 E-value=3.2e-05 Score=51.50 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=40.0
Q ss_pred CCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEe
Q psy6948 7 ETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIA 64 (69)
Q Consensus 7 ~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~ 64 (69)
..|.+|||.|.+-.-||+++|.+. .+.+.|+|+|+|.. ...|..++||.
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~--~~~~ky~V~FdDg~-------~~~v~~k~iiv 54 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRD--VGAGKYKLLFDDGY-------ECDVLGKDILL 54 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEE--EETTEEEEEETTSC-------EEEEEGGGEEC
T ss_pred ccceEEEEEeccCCcCcccEEEEe--ccCCeEEEEEcCCC-------eeEeecceEEE
Confidence 369999999999989999999885 45567999999853 36677888883
No 10
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.65 E-value=0.00011 Score=40.88 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
+++|+.++|.|.+=-.+|||+|.+.... .+.+.|.|.|=
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~-~~~~~V~fvDY 40 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSS-GMTAVVKFIDY 40 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--C-CSEEEEEETTT
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCC-CCEEEEEEEcc
Confidence 7899999999987789999999987543 24699999983
No 11
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=97.63 E-value=0.0001 Score=43.62 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
+.|..|+.|||.+=+ --||.|+|....+.. ..|.|+|+|.+
T Consensus 2 ~~f~~GedVLarwsD-G~fYlGtI~~V~~~~-~~clV~F~D~s 42 (58)
T 4hcz_A 2 PRLWEGQDVLARWTD-GLLYLGTIKKVDSAR-EVCLVQFEDDS 42 (58)
T ss_dssp CSCCTTCEEEEECTT-SCEEEEEEEEEETTT-TEEEEEETTSC
T ss_pred CccccCCEEEEEecC-CCEEeEEEEEEecCC-CEEEEEEcCCC
Confidence 568999999999998 789999999976543 35999999975
No 12
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.0001 Score=44.80 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
..+.|..|+.|||.+=+ --||.|+|...-... ..|.|+|||++
T Consensus 6 ~~~~f~eGqdVLarWsD-GlfYlGtV~kV~~~~-~~ClV~FeD~s 48 (68)
T 2e5p_A 6 SGPRLWEGQDVLARWTD-GLLYLGTIKKVDSAR-EVCLVQFEDDS 48 (68)
T ss_dssp CCCCCCTTCEEEEECTT-SSEEEEEEEEEETTT-TEEEEEETTTE
T ss_pred CCcccccCCEEEEEecC-CcEEEeEEEEEecCC-cEEEEEEccCC
Confidence 35789999999999988 789999999987543 36999999974
No 13
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=97.50 E-value=0.00022 Score=41.21 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=34.5
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
+..+.+|+.|||+|-+=-.||+|+|.+.... .+.+.|.|.|=
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~-~~~~~V~fvdY 47 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEE-NGTAAITFAGY 47 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETT-TTEEEEEETTT
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCC-CCEEEEEEEec
Confidence 3468999999999988889999999987642 23599999983
No 14
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.32 E-value=0.00035 Score=43.32 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=34.4
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
...+.+|+.|||+|.+--+||+|+|.+--.. .+.|.|.|.|=
T Consensus 8 ~~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~-~~~~~V~fiDY 49 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDGCIYPATIASIDFK-RETCVVVYTGY 49 (88)
T ss_dssp -CCCCSSCEEEEECTTTCCEEEEEEEEEETT-TTEEEEEETTT
T ss_pred cCCCCCCCEEEEEECCCCCEEEEEEEEecCC-CCEEEEEEecC
Confidence 3468999999999998889999999997542 24699999873
No 15
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=97.32 E-value=0.00056 Score=40.97 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
..+.+|+.|||.|.+=-.||||+|.+.-.. .+.+.|.|.|=
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~-~~~~~V~fiDY 48 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHSS-GMTAVVKFTDY 48 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECSS-SSEEEEEETTT
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeCC-CCEEEEEEEcC
Confidence 468899999999987789999999987532 35699999883
No 16
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=96.38 E-value=3.8e-05 Score=47.65 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=32.5
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEcc
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 44 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeD 44 (69)
.|.+|+.|||.|. --.||+|+|.+.... +.|.|.|.|
T Consensus 6 ~~kvGd~clAkws-Dg~wY~A~I~~v~~~--~~y~V~F~D 42 (81)
T 2ldm_A 6 EFQINEQVLASWS-DSRFYPAKVTAVNKD--GTYTVKFYD 42 (81)
Confidence 5889999999999 779999999998643 369999998
No 17
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=97.27 E-value=0.00039 Score=41.96 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCCCC-ceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 5 TIETKILLMALYPQTT-CFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT-~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
.|..|+.|||.| |. -||.|+|.+-.+. ++.|.|+|+|++
T Consensus 13 ~f~vGddVLA~w--tDGl~Y~gtI~~V~~~-~gtC~V~F~D~s 52 (66)
T 2eqj_A 13 KFEEGQDVLARW--SDGLFYLGTIKKINIL-KQSCFIIFEDSS 52 (66)
T ss_dssp CSCTTCEEEEEC--TTSCEEEEEEEEEETT-TTEEEEEETTTE
T ss_pred cccCCCEEEEEE--ccCcEEEeEEEEEccC-CcEEEEEEccCC
Confidence 699999999999 44 4999999998864 336999999964
No 18
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=97.24 E-value=0.00046 Score=41.48 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=34.4
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
+..+.+|+.|+|.|.+=-.+|||+|.+..... +.+.|.|.|=
T Consensus 15 ~~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~-~~~~V~fvDY 56 (77)
T 3pnw_C 15 AKMWKPGDECFALYWEDNKFYRAEVEALHSSG-MTAVVKFIDY 56 (77)
T ss_dssp HTTCCTTCEEEEEETTTTEEEEEEEEEECTTS-SEEEEEETTT
T ss_pred cCCCCcCCEEEEEECCCCCEEEEEEEEEeCCC-CEEEEEEEcC
Confidence 35689999999999877899999999875332 4699999983
No 19
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=97.22 E-value=0.00091 Score=40.70 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=33.9
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
+..|..|+.|||.+=+ --||-++|+.. .+..|.|+|||++
T Consensus 13 a~~~~~geDVL~rw~D-G~fYLGtIVd~---~~~~ClV~FeD~S 52 (69)
T 2xk0_A 13 AVTYALQEDVFIKCND-GRFYLGTIIDQ---TSDQYLIRFDDQS 52 (69)
T ss_dssp CCCCCTTCEEEEECTT-SCEEEEEEEEE---CSSCEEEEETTCC
T ss_pred ccccccCCeEEEEecC-CCEEEEEEEec---CCceEEEEecCCc
Confidence 4689999999999888 88999999663 3556999999986
No 20
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.12 E-value=0.0015 Score=39.21 Aligned_cols=41 Identities=17% Similarity=0.351 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
..|..|+.|||.+=+= -||.|+|...-... ..|.|+|||++
T Consensus 6 ~~f~eGqdVLarWsDG-lfYlgtV~kV~~~~-~~ClV~FeD~s 46 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTDG-LYYLGKIKRVSSSK-QSCLVTFEDNS 46 (63)
T ss_dssp CCCCTTCEEEEECTTS-CEEEEEECCCCSTT-SEEEEEETTSC
T ss_pred cceecCCEEEEEecCC-CEEEEEEEEEecCC-CEEEEEEccCc
Confidence 4799999999999764 59999999987553 36999999975
No 21
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=97.05 E-value=0.00063 Score=46.67 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=35.4
Q ss_pred CCCCCCCCCCEEEEEcCC-CCceecEEEEcCCCC---CCCCeEEEEccCC
Q psy6948 1 MDGSTIETKILLMALYPQ-TTCFYKAIVNSLPTT---GTDDYELLFEDNS 46 (69)
Q Consensus 1 ~~~~~f~~g~~VLAlYP~-TT~FY~A~V~~~p~~---~~~~y~l~FeDd~ 46 (69)
|+...| -.+|+|.|++ =.++|+|+.+..+.. ++..|.|+|||..
T Consensus 3 ~~~~~~--~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~ 50 (153)
T 2fhd_A 3 MSRRSF--KNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDAT 50 (153)
T ss_dssp CCCCCG--GGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSC
T ss_pred cccccc--cceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCC
Confidence 444455 4579999995 789999999999865 6778999999963
No 22
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=97.02 E-value=0.0014 Score=39.49 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
...+|+.|+|.|++--.+|||.|.+... .+.+.|.|-|=
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~--~~~~~V~fvDy 65 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE--NGNLDLYFVDF 65 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT--TSCEEEEETTT
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC--CCeEEEEEEcC
Confidence 5689999999999999999999999853 34699999994
No 23
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=97.01 E-value=0.001 Score=47.44 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCCCC--ceecEEEEcCCCC-CCCCeEEEEcc
Q psy6948 5 TIETKILLMALYPQTT--CFYKAIVNSLPTT-GTDDYELLFED 44 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT--~FY~A~V~~~p~~-~~~~y~l~FeD 44 (69)
.++.|++|.|+|-+.+ .||.++|..+|.. ....|.|-|+|
T Consensus 68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDD 110 (213)
T 3dlm_A 68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDD 110 (213)
T ss_dssp GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETT
T ss_pred EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeC
Confidence 5899999999999976 8999999999974 44579998876
No 24
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.77 E-value=0.0026 Score=39.34 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
.+.+|+.|+|.|.+--.+|||+|.+.... +.+.|.|.|=
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~--~~~~V~fvDy 70 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLEN--GNLDLYFVDF 70 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSS--SCEEEEETTT
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC--CeEEEEEEeC
Confidence 56899999999998889999999987643 5699999994
No 25
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=96.64 E-value=0.0026 Score=43.71 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 6 IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 6 f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
-..|..|||.|.+---||+|+|.+. ...+.|.|+|||.
T Consensus 9 ~~iG~rVfArWsd~~yyYpG~V~~~--~~~~~Y~V~FdDG 46 (156)
T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRD--VGAGKYKLLFDDG 46 (156)
T ss_dssp CSTTCEEEECSSCSSEEEEEEEEEC--CTTTEEEEECTTS
T ss_pred chhccEEEEEcCCCCcccccEEEEe--ccCCEEEEEEcCC
Confidence 3789999999998888999999986 3455699999984
No 26
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=96.39 E-value=0.004 Score=38.70 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=33.8
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
...|..|+.|||.+=+= -||.|+|+..-.. +..|.|+|+|++
T Consensus 24 ~~~f~eGeDVLarwsDG-lfYLGTI~kV~~~-~e~ClV~F~D~S 65 (79)
T 2m0o_A 24 RPRLWEGQDVLARWTDG-LLYLGTIKKVDSA-REVCLVQFEDDS 65 (79)
T ss_dssp CCCCCTTCEEEBCCTTS-CCCEEEEEEEETT-TTEEEEEETTSC
T ss_pred cceeccCCEEEEEecCC-CEEeEEEEEeccC-CCEEEEEEcCCC
Confidence 45799999999998663 5999999977643 336999999975
No 27
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=96.21 E-value=0.0085 Score=39.39 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=33.8
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
...+|+.++|.|++--.+|||+|.+....+ .+.|.|-|=
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~--~~~V~fvDy 85 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLDDG--KCEVHFIDF 85 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECSTT--CEEEEETTT
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECCCC--EEEEEEEec
Confidence 578999999999988899999999876543 599999984
No 28
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=95.50 E-value=0.019 Score=37.84 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=32.9
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
...+|+.|+|.|.+--.+|||+|.+... +.+.|.|-|-
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~---~~~~V~~vDy 88 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG---SNATVLYIDY 88 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET---TEEEEEETTT
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC---CeEEEEEEec
Confidence 4678999999999878999999998754 6799999984
No 29
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=95.27 E-value=0.04 Score=36.82 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
....|+.++|.|.+--.+|||.|.+.... +.+.|.|-|=
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~~--~~~~V~~vDy 103 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILPS--GNVKVHFVDY 103 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTT--SCEEEEETTT
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCC--CeEEEEEEcc
Confidence 45679999999999999999999986533 4599999994
No 30
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=94.64 E-value=0.04 Score=37.50 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
....|+.++|.|.+--.+|||.|.+... .+.+.|.|-|=
T Consensus 65 ~~~~G~~c~a~~~~d~~WyRa~V~~~~~--~~~~~V~~vDy 103 (226)
T 4b9x_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILP--SGNVKVHFVDY 103 (226)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECS--SSEEEEECTTT
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC--CCeEEEEEEec
Confidence 4568999999999999999999998653 34599999994
No 31
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=94.20 E-value=0.024 Score=34.04 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=33.8
Q ss_pred CCCCCCCCCEEEEEcCCC--CceecEEEEcCCCC-CCCCeEEEEcc
Q psy6948 2 DGSTIETKILLMALYPQT--TCFYKAIVNSLPTT-GTDDYELLFED 44 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~T--T~FY~A~V~~~p~~-~~~~y~l~FeD 44 (69)
+...|..|.+||+.++++ ...|+|.|...-.. +...|.|.|.+
T Consensus 2 e~~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~g 47 (76)
T 2lcc_A 2 DMEPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYG 47 (76)
T ss_dssp CCCCSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETT
T ss_pred cccccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCC
Confidence 456899999999999953 68999999886532 33479999965
No 32
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=93.84 E-value=0.05 Score=35.49 Aligned_cols=43 Identities=26% Similarity=0.392 Sum_probs=35.1
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYAD 49 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~d 49 (69)
+.+..|++|.|--. ..-||+|+|.+.- .+..|.|.|+|.+.-+
T Consensus 4 ~~v~vGq~V~akh~-ngryy~~~V~~~~--~~~~y~V~F~DgS~s~ 46 (118)
T 2qqr_A 4 QSITAGQKVISKHK-NGRFYQCEVVRLT--TETFYEVNFDDGSFSD 46 (118)
T ss_dssp SCCCTTCEEEEECT-TSSEEEEEEEEEE--EEEEEEEEETTSCEEE
T ss_pred ceeccCCEEEEECC-CCCEEeEEEEEEe--eEEEEEEEcCCCCccC
Confidence 46889999999988 5689999999974 4457999999976544
No 33
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=93.75 E-value=0.065 Score=34.08 Aligned_cols=56 Identities=13% Similarity=0.281 Sum_probs=39.6
Q ss_pred CCCCCCCCEEEEEcCC---CCceecEEEEcCCC------CCCCCeEEEEccCCCCCCCCCC--ccccCcEEEe
Q psy6948 3 GSTIETKILLMALYPQ---TTCFYKAIVNSLPT------TGTDDYELLFEDNSYADNYAPP--LGVPQRYVIA 64 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~---TT~FY~A~V~~~p~------~~~~~y~l~FeDd~~~dG~sp~--~~V~~ryVv~ 64 (69)
.+.|..|..||+.+++ --..|.|.|...-. .+...|.|.|.+ .+.. ..||.--|+.
T Consensus 17 ~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~G------Wn~rwDEWV~edRilk 83 (101)
T 3m9q_A 17 TPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQG------WRPSYDRAVRATVLLK 83 (101)
T ss_dssp CCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETT------SCGGGCEEECGGGEEE
T ss_pred CCcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCC------CCcCceeecCHHHccc
Confidence 4689999999999986 56799999987653 233479999955 3222 3566555544
No 34
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.63 E-value=0.069 Score=32.97 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=34.8
Q ss_pred CCCCCCCCEEEEEcC---CCCceecEEEEcCCC-CCCCCeEEEEccC
Q psy6948 3 GSTIETKILLMALYP---QTTCFYKAIVNSLPT-TGTDDYELLFEDN 45 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP---~TT~FY~A~V~~~p~-~~~~~y~l~FeDd 45 (69)
.+.|..|.+|++.++ ....+|.|+|.+.-. .+...|-|.|.+=
T Consensus 7 ~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~ 53 (87)
T 2eko_A 7 GGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDF 53 (87)
T ss_dssp SCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSS
T ss_pred cccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCC
Confidence 468999999999997 577999999987653 3455899999763
No 35
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=93.03 E-value=0.018 Score=37.88 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=36.1
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYAD 49 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~d 49 (69)
+.+..|+.|.|-..+ .-||+|+|...-. +..|.|.|+|.+.-+
T Consensus 5 ~~v~vGq~V~ak~~n-gryy~~~V~~~~~--~~~y~V~F~DgS~s~ 47 (123)
T 2xdp_A 5 KVISVGQTVITKHRN-TRYYSCRVMAVTS--QTFYEVMFDDGSFSR 47 (123)
T ss_dssp CCCCTTCCCCCCCCC-CCCCCCEEEEEEE--EEEEEEEETTSCEEE
T ss_pred cccccCCEEEEECCC-CcEEeEEEEEEee--EEEEEEEcCCCCccC
Confidence 578899999999887 8999999999874 556999999976543
No 36
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=92.69 E-value=0.12 Score=35.11 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
...+|+.++|.|. -.++|||.|.+.... +.+.|.|-|-
T Consensus 65 ~~~~G~~c~a~~~-d~~wyRa~V~~~~~~--~~~~V~~vDy 102 (246)
T 2hqx_A 65 APRRGEFCIAKFV-DGEWYRARVEKVESP--AKIHVFYIDY 102 (246)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEET--TEEEEEETTT
T ss_pred CCCCCCEEEEEcC-CCCEEEEEEEEEcCC--CeEEEEEEeC
Confidence 4578999999998 578999999987532 4699999984
No 37
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=92.36 E-value=0.29 Score=28.18 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
+..|++|.++-|+-+.-.. |.|+|......+ ..+.|.|++=
T Consensus 10 ~~~F~vGmkLEa~d~~~p~-~~AtV~~v~~~~-~~~~VhfdGw 50 (69)
T 3sd4_A 10 GISFEVGAQLEARDRLKNW-YPAHIEDIDYEE-GKVLIHFKRW 50 (69)
T ss_dssp TCCCSTTCEEEEECTTSCE-EEEEEEEEETTT-TEEEEEETTS
T ss_pred CCCcCCCCEEEEEECCCCc-cccEEEEEeccC-CEEEEEeCCC
Confidence 4589999999999998877 999999863222 3589999764
No 38
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=92.35 E-value=0.15 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCC---CCCCCeEEEEcc
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPT---TGTDDYELLFED 44 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~---~~~~~y~l~FeD 44 (69)
.+.|..|..||+.+. .-.+|.|.|...-. .+...|.|.|.+
T Consensus 10 ~~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~g 53 (133)
T 1wgs_A 10 EVTVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVG 53 (133)
T ss_dssp CCCCCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTT
T ss_pred ccccCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccC
Confidence 346999999999997 34899999987442 344579999974
No 39
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=91.51 E-value=0.21 Score=32.24 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCCCCCCEEEEEcCCCC---ceecEEEEcCCCC--CC----CCeEEEEcc
Q psy6948 4 STIETKILLMALYPQTT---CFYKAIVNSLPTT--GT----DDYELLFED 44 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT---~FY~A~V~~~p~~--~~----~~y~l~FeD 44 (69)
..|..|.+||+..|+.+ -.|.|.|...-.. .. ..|.|.|.+
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~G 67 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNG 67 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETT
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECC
Confidence 46999999999999965 6999999864311 11 258998855
No 40
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=90.72 E-value=0.26 Score=31.18 Aligned_cols=40 Identities=8% Similarity=0.139 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCC-CCCCCCeEEEEcc
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLP-TTGTDDYELLFED 44 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p-~~~~~~y~l~FeD 44 (69)
.+.|..|.+||+.. ....|.|.|...- ..+...|.|.|.|
T Consensus 20 ~~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~G 60 (102)
T 2f5k_A 20 KPKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSG 60 (102)
T ss_dssp SCSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CcccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 35799999999998 4689999999865 2344579999965
No 41
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=90.59 E-value=0.2 Score=35.65 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCC-CCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTG-TDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~-~~~y~l~FeDd 45 (69)
++..|..|||.. .|-++|+|+|..--+.+ .-.|.|+|++.
T Consensus 8 ~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~ 48 (213)
T 3dlm_A 8 DLIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNK 48 (213)
T ss_dssp TEETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSS
T ss_pred cEEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCC
Confidence 578999999999 77999999999844322 23699999964
No 42
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=89.98 E-value=0.31 Score=31.43 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCCCCCCEEEEEcCC---CCceecEEEEcCCCC----C--CCCeEEEEccCCCCCCCCCC--ccccCcEEEee
Q psy6948 4 STIETKILLMALYPQ---TTCFYKAIVNSLPTT----G--TDDYELLFEDNSYADNYAPP--LGVPQRYVIAY 65 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~---TT~FY~A~V~~~p~~----~--~~~y~l~FeDd~~~dG~sp~--~~V~~ryVv~~ 65 (69)
+.|..|..||+.+++ +-..|.|.|...-.. + ...|.|.|.+ .+.. ..||.-.|+.+
T Consensus 18 ~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~G------Wn~~wDEWV~e~rllk~ 84 (110)
T 3m9p_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNG------WNRSWDRWAAEDHVLRD 84 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETT------SCGGGCEEEEGGGEEEC
T ss_pred CcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECC------CCcchhhccCHhhhhcC
Confidence 569999999999986 357999999887532 1 2479999965 3222 35666555543
No 43
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=89.08 E-value=0.066 Score=32.73 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=31.9
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCC-CCCCCeEEEEcc
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPT-TGTDDYELLFED 44 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~FeD 44 (69)
.+.|..|.+||+.+.+ ..|.|.|...-. .+...|.|.|.+
T Consensus 10 ~~~~~~Gekv~~~~~~--~~y~AkIl~i~~~~~~~~YyVHY~G 50 (85)
T 2lrq_A 10 NTLFVDGERVLCFHGP--LIYEAKVLKTKPDATPVEYYIHYAG 50 (85)
Confidence 3579999999999976 579999998763 344579999975
No 44
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=89.17 E-value=0.72 Score=28.52 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=31.5
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCC-CCCCCeEEEEcc
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPT-TGTDDYELLFED 44 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~FeD 44 (69)
..|..|.+|++.. .-.+|.|.|.+.-. .+...|-|.|.+
T Consensus 22 ~~~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g 61 (92)
T 2ro0_A 22 DDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVN 61 (92)
T ss_dssp TSCCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETT
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 4699999999996 66899999987653 344589999976
No 45
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=88.95 E-value=0.39 Score=36.69 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=32.1
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
...+|+.++|.|. --++|||+|..... .+.+.|.|.|-
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~--~~~~~V~fvDy 448 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVES--PAKIHVFYIDY 448 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEE--TTEEEEEETTT
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcC--CCeEEEEEEeC
Confidence 4678999999998 57899999998765 35699999994
No 46
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=86.39 E-value=2.4 Score=26.37 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=34.0
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCCC----CCCCeEEEEccC
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPTT----GTDDYELLFEDN 45 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~----~~~~y~l~FeDd 45 (69)
.+..|..|++|+|-. ..=.+++|.|...|.. ....|.|.|=++
T Consensus 16 ~~~~~~~GdlVwaK~-kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt 62 (110)
T 1ri0_A 16 RQKEYKCGDLVFAKM-KGYPHWPARIDEMPEAAVKSTANKYQVFFFGT 62 (110)
T ss_dssp CSSSCCTTCEEEEEE-TTEEEEEEEEECCCSSSSCCCSSCEEEEETTT
T ss_pred ccCCCCCCCEEEEEe-CCCCCCCEEEecccHhhcCCCCCEEEEEEecC
Confidence 467899999999986 4456899999988743 345899999875
No 47
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=84.90 E-value=2.7 Score=27.88 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=21.9
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSL 30 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~ 30 (69)
+.|.+|..|||.+=.+ .|.|.|...
T Consensus 6 p~f~~gE~VlcfHg~~--~YeAKIl~i 30 (130)
T 3e9g_A 6 QEFALGGRCLAFHGPL--MYEAKILKI 30 (130)
T ss_dssp -CCCTTCEEEEEETTE--EEEEEEEEE
T ss_pred ccccCCCEEEEEeCCc--ceeeEEEEe
Confidence 6899999999999866 899999887
No 48
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=84.09 E-value=0.99 Score=28.20 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=31.2
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCC-CCCCCeEEEEcc
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPT-TGTDDYELLFED 44 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~FeD 44 (69)
..|..|.+|++.. .-.+|.|+|.+.-. .+...|-|.|.|
T Consensus 24 ~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g 63 (94)
T 2rnz_A 24 DDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVN 63 (94)
T ss_dssp GGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTT
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCC
Confidence 3689999999996 66899999987653 344579999976
No 49
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.10 E-value=2.1 Score=26.43 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=33.4
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEcc
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFED 44 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeD 44 (69)
....|..|-|.|+++-..|||.|.+.-+... ..|+|=|
T Consensus 21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~~~--veVl~~D 58 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKNQWRRGQIIRMVTDTL--VEVLLYD 58 (85)
T ss_dssp CCCSSCEEEEECSSSCCEEEEEEEEECSSSE--EEEECTT
T ss_pred CccCCCEEEEEeCCCCeEEEEEEEEecCCCe--EEEEEEc
Confidence 5678999999999999999999999876555 8888887
No 50
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=79.73 E-value=2.9 Score=26.49 Aligned_cols=58 Identities=21% Similarity=0.217 Sum_probs=39.6
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCC--------CCCeEEEEccCCCCCCCCCCccccCcEEEeee
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTG--------TDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 66 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~--------~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k 66 (69)
+..|..|++|+|-.- .-.+++|.|..+|... ...|.|.|=++... .-.|+..-+.++.
T Consensus 20 ~~~~~~GdlVwaK~~-g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~-----~aWv~~~~l~pf~ 85 (134)
T 2gfu_A 20 SSDFSPGDLVWAKME-GYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPT-----RGWVSKRLLKPYT 85 (134)
T ss_dssp SCCCCTTSEEEECCT-TSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCE-----EEEECGGGEEESC
T ss_pred CCCCCCCCEEEEeec-CCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCc-----eEEECHHHcccCc
Confidence 568999999999865 4468999999987432 34799999775310 1245555555554
No 51
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=78.57 E-value=3 Score=25.43 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=33.5
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCC---------CCCCCeEEEEccC
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPT---------TGTDDYELLFEDN 45 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~---------~~~~~y~l~FeDd 45 (69)
+|..+..|++|.|-..+ -.+++|.|..+.. .....|.|.|=++
T Consensus 5 ~g~~~~~GdlVwaK~~g-~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~ 56 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGN-YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGS 56 (110)
T ss_dssp CCCSCCSSEEEEEECSS-SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTT
T ss_pred CCCCCCCCCEEEEEeCC-CCCCceeeCChhhCCHHHhhccCCCCcEEEEEecC
Confidence 46789999999999766 6799999998831 1234799999775
No 52
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=78.43 E-value=8.5 Score=23.12 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCC----CCCCeEEEEccC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTT----GTDDYELLFEDN 45 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~----~~~~y~l~FeDd 45 (69)
..|..|++|+|-. .-=-+-+|.|...+.. ....|.|.|=++
T Consensus 4 ~~f~~GdlVwaK~-~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt 48 (94)
T 3qby_A 4 HAFKPGDLVFAKM-KGYPHWPARIDDIADGAVKPPPNKYPIFFFGT 48 (94)
T ss_dssp CCCCTTCEEEECC-TTSCCEEEEECCCCTTSBCCCTTCEEEEETTT
T ss_pred CcCccCCEEEEec-CCCCCCCEEEeecccccccCCCCEEEEEEEcC
Confidence 5899999999987 3345789999988742 245899999875
No 53
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=76.97 E-value=4.9 Score=25.91 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=38.2
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCCCC----CCCCeEEEEccCCCCCCCCCCccccCcEEEee
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLPTT----GTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~----~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
..|..|++|+|-..+ -.+.+|.|..++.. ....|.|.|=++. . .-.|+.+-+.+|
T Consensus 21 ~~f~~GdlVwaK~~g-~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~---~---~awv~~~~l~~f 79 (153)
T 4fu6_A 21 RDFKPGDLIFAKMKG-YPHWPARVDEVPDGAVKPPTNKLPIFFFGTH---E---TAFLGPKDIFPY 79 (153)
T ss_dssp GGCCTTCEEEECCTT-SCCEEEEECCCC---CCCCTTCEEEEETTTC---C---EEEECGGGEEEH
T ss_pred cCCCCCCEEEEeCCC-CCCCCEEEeEchhhccCCCCCEEEEEecCCC---C---eEEeCHHHccCh
Confidence 468999999999855 56999999987753 2347999998752 1 125555555544
No 54
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=76.14 E-value=7.9 Score=25.32 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=40.9
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCCCC-----------------------------CCCeEEEEccCCCCCCCC
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPTTG-----------------------------TDDYELLFEDNSYADNYA 52 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~-----------------------------~~~y~l~FeDd~~~dG~s 52 (69)
+...|..|++|.|-- .+-=+|+|.|+-|.... ...|.|+|=|+.
T Consensus 2 ~~~~~~~~dlVWAK~-~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~------ 74 (130)
T 3l42_A 2 EDSPLDALDLVWAKC-RGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNK------ 74 (130)
T ss_dssp CCSSSCTTCEEEECC-TTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTT------
T ss_pred CcccCCCCCEEEEec-ccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCC------
Confidence 457899999999987 66669999998854221 346999998853
Q ss_pred CCc-cccCcEEEeee
Q psy6948 53 PPL-GVPQRYVIAYK 66 (69)
Q Consensus 53 p~~-~V~~ryVv~~k 66 (69)
+.+ .|+.+.+.++.
T Consensus 75 ~t~aWv~~~~i~pl~ 89 (130)
T 3l42_A 75 RTWQWLPRTKLVPLG 89 (130)
T ss_dssp CCEEEEEGGGEEESS
T ss_pred CceEeecccceeecC
Confidence 123 66666666654
No 55
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=76.11 E-value=5.8 Score=23.93 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDN 45 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd 45 (69)
...|.+|.+|-|+=+.=. .|.|+|...-..+. .|.|.|++=
T Consensus 17 ~~~F~vGmkLEA~D~~~~-~~~a~i~~v~~~~~-~v~VHfdGW 57 (88)
T 2eqm_A 17 GITFEIGARLEALDYLQK-WYPSRIEKIDYEEG-KMLVHFERW 57 (88)
T ss_dssp SCCCCSSCEEEEECTTSC-EEEEEEEEEETTTT-EEEEEESSS
T ss_pred cCcCCCCCEEEEEcCCCC-eeEEEEEEEeccCC-EEEEEECCC
Confidence 357999999999987643 48888876543333 699999764
No 56
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=75.73 E-value=2.7 Score=27.33 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=25.5
Q ss_pred CceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEE
Q psy6948 20 TCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVI 63 (69)
Q Consensus 20 T~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv 63 (69)
-+||+|+|..- ..+.+.|.|+++- .|+..||...|=
T Consensus 15 G~~y~a~V~~v---~~d~~~V~f~n~w-----~~~~~vp~~~vR 50 (128)
T 3h8z_A 15 GAFYKGFVKDV---HEDSVTIFFENNW-----QSERQIPFGDVR 50 (128)
T ss_dssp SCEEEEEEEEE---CSSEEEEEETTCT-----TCCEEEEGGGEE
T ss_pred CCEEEEEEEEE---eCCcEEEEEcccc-----CcceEechhhEE
Confidence 58999999775 4667999998753 245666655543
No 57
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=74.36 E-value=7.6 Score=23.61 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=37.6
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcC-----------CCCCCCCeEEEEccCCCCCCCCCCccccCcEEEee
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSL-----------PTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~-----------p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
...|..|++|+|-. ..-..++|.|..+ |.+....|.|.|=++. . --.|+.+-+.++
T Consensus 4 ~~~~~~GdlVwaK~-~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~---~---~aWv~~~~l~p~ 70 (109)
T 1h3z_A 4 RVNYKPGMRVLTKM-SGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNK---E---YLWTGSDSLTPL 70 (109)
T ss_dssp CCCCCTTCEEEEEE-TTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTT---C---CEEEEGGGEEEC
T ss_pred cccCCCCCEEEEEe-CCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCC---C---EEEECHHHeeeC
Confidence 45899999999987 3446899999954 2222467999998763 1 124555555544
No 58
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=73.62 E-value=8.2 Score=25.61 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=41.4
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCC-----CCCCCeEEEEccCCCCCCCCCCccccCcEEEeee
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPT-----TGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 66 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-----~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k 66 (69)
++..|..|++|.|-- .--...+|.|..++. ...+.|.|.|=++. -.-.|...-+.++.
T Consensus 13 dg~~f~~GDLVWaKv-kG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~------~~awv~~~~L~pf~ 75 (154)
T 3llr_A 13 DGRGFGIGELVWGKL-RGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDG------KFSVVCVEKLMPLS 75 (154)
T ss_dssp SSCCCCTTCEEEECC-TTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTC------CEEEEEGGGEEEGG
T ss_pred cCCCCccCCEEEEec-CCCCCCCEEEecccccccccCCCCEEEEEEeCCC------CEEEEcHHHCcchh
Confidence 567899999999987 446789999998762 23457999998863 11356655555543
No 59
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=72.93 E-value=5 Score=28.35 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCCCCCEEEEEcCCCCceecEEEEcCCCCC------C--CCeEEEEccCC
Q psy6948 5 TIETKILLMALYPQTTCFYKAIVNSLPTTG------T--DDYELLFEDNS 46 (69)
Q Consensus 5 ~f~~g~~VLAlYP~TT~FY~A~V~~~p~~~------~--~~y~l~FeDd~ 46 (69)
.|..|+.|.|.-...-+||.|.|+.--+.. . -.|.++|||..
T Consensus 2 ~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~ 51 (226)
T 3ask_A 2 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYP 51 (226)
T ss_dssp CSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCG
T ss_pred ccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCc
Confidence 578999999999999999999998765432 1 27999999873
No 60
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=71.02 E-value=17 Score=24.41 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCCCCCCCEEEEEcCCCCceecEEEEcCCCC-----------------------------CCCCeEEEEccCCCCCCCCC
Q psy6948 3 GSTIETKILLMALYPQTTCFYKAIVNSLPTT-----------------------------GTDDYELLFEDNSYADNYAP 53 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~-----------------------------~~~~y~l~FeDd~~~dG~sp 53 (69)
...|..|++|+|-- .+=-+|+|+|+-+... ....|.|+|=|+...=
T Consensus 34 ~~~~~pgdlVWAK~-~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~---- 108 (158)
T 3pfs_A 34 RGDLEPLELVWAKC-RGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTW---- 108 (158)
T ss_dssp CSCCCTTCEEEEEC-TTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCE----
T ss_pred CCCCCCCCEEEEec-CCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCce----
Confidence 35799999999997 5666999999874431 1346999998853111
Q ss_pred CccccCcEEEeee
Q psy6948 54 PLGVPQRYVIAYK 66 (69)
Q Consensus 54 ~~~V~~ryVv~~k 66 (69)
-.|+.+.+.++.
T Consensus 109 -aWV~~~~L~Pl~ 120 (158)
T 3pfs_A 109 -QWLPRDKVLPLG 120 (158)
T ss_dssp -EEEEGGGEEECS
T ss_pred -EeeccccEeecC
Confidence 266666666553
No 61
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=69.19 E-value=12 Score=24.35 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=33.4
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCCC-----CCCCeEEEEccC
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPTT-----GTDDYELLFEDN 45 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~~-----~~~~y~l~FeDd 45 (69)
++..|..|++|.|-- ..-..++|.|..++.. ..+.|.|.|=++
T Consensus 8 ~~~~~~~GDlVWaKv-kGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~ 55 (147)
T 1khc_A 8 DDKEFGIGDLVWGKI-KGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGD 55 (147)
T ss_dssp SSSSCCTTCEEEEEE-TTTEEEEEEEECGGGTTSCCCCTTEEEEEETTT
T ss_pred CCccCcCCCEEEEec-CCcCCCCEEeccchhhhcccCCCCeEEEEEecC
Confidence 456899999999986 4456899999987653 235799999875
No 62
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=66.35 E-value=4.7 Score=26.01 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=35.9
Q ss_pred CCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCCCCccccCcEEEeee
Q psy6948 7 ETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYK 66 (69)
Q Consensus 7 ~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~k 66 (69)
+.|+.|.=++++=. -|.|+..+.-.. -.|.|.|||.+ .+.+++.-|-...
T Consensus 65 ~~G~~V~V~W~DG~-~y~a~f~g~~~~--~~Y~V~feDgs-------~~~~kR~~iyt~~ 114 (118)
T 2qqr_A 65 AEGEVVQVRWTDGQ-VYGAKFVASHPI--QMYQVEFEDGS-------QLVVKRDDVYTLD 114 (118)
T ss_dssp CTTCEEEEECTTSC-EEEEEEEEEEEE--EEEEEEETTSC-------EEEECGGGEEETT
T ss_pred CCCCEEEEEcCCCC-EeeeEEeceeEE--EEEEEEECCCC-------EEEEcHHHeeccc
Confidence 57899999999876 789988875433 35999999964 3566665554433
No 63
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=62.19 E-value=5.3 Score=25.95 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCCCCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 7 ETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 7 ~~g~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
+.|+.|.=++++=. -|.|+..+.-... .|.|.|||.+
T Consensus 66 ~~G~~V~V~W~DG~-~y~a~f~g~~~~~--~YtV~FeDgs 102 (123)
T 2xdp_A 66 AEGEVVQVKWPDGK-LYGAKYFGSNIAH--MYQVEFEDGS 102 (123)
T ss_dssp CTTCEEEEECTTSC-EEEEEEEEEEEEE--EEEEECTTSC
T ss_pred CCCCEEEEEcCCCC-EEeEEEeeeeeEE--EEEEEECCCC
Confidence 57899999998766 7888888775433 5999999964
No 64
>2w4y_A Caulobacter 5 virus-like particle; structure, assembly, calcium ION, RNA; HET: AMP; 2.90A {Unclassified levivirus} PDB: 2w4z_A*
Probab=58.15 E-value=7.1 Score=25.15 Aligned_cols=50 Identities=24% Similarity=0.372 Sum_probs=36.7
Q ss_pred EcCCCCceecEEEEcCCCC-----CC-CCeEEEEccCCCCCCCCCCccccCcEEEee
Q psy6948 15 LYPQTTCFYKAIVNSLPTT-----GT-DDYELLFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 15 lYP~TT~FY~A~V~~~p~~-----~~-~~y~l~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
..|+|++=++|.|...... .+ ..-.+.|...-++.|.+|+ -|-|-|||.-
T Consensus 33 ylpetsssfrakvrhtkesvkpnqvqyerhnveftetvyasgstpe-fvrqayvvir 88 (122)
T 2w4y_A 33 YLPETSSSFRAKVRHTKESVKPNQVQYERHNVEFTETVYASGSTPE-FVRQAYVVIR 88 (122)
T ss_dssp EEECSSEEEEEEEEEEECCCCTTSCCEEEEEEEEEEEECCBTTBCC-EEEEEEEEEE
T ss_pred EccccchHHHHHhhhcccccCccceeeeeccceEEEEEEecCCChH-HhheeeEEEE
Confidence 3599999999999754322 11 2446899999999998874 5778888753
No 65
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=56.61 E-value=15 Score=26.87 Aligned_cols=61 Identities=7% Similarity=-0.030 Sum_probs=39.5
Q ss_pred CCCCCCEEEEEcC---CCCceecEEEEcCCCCCCCCeEEEEccCCCCCCCC-CCccccCcEEEeeeC
Q psy6948 5 TIETKILLMALYP---QTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYA-PPLGVPQRYVIAYKK 67 (69)
Q Consensus 5 ~f~~g~~VLAlYP---~TT~FY~A~V~~~p~~~~~~y~l~FeDd~~~dG~s-p~~~V~~ryVv~~k~ 67 (69)
...+|+.|-|.=. +....=-|+|++--..+ ..|.|.=+|.+ ++|.. ....+++|.||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~~~-~~y~v~d~~~~-~~~~~~~~~~~~~~~~~~~p~ 451 (522)
T 3mp6_A 387 PILVGSEVAYKPRRGSADGEWIQCEVLKVVADG-TRFEVRDPEPD-ELGNSGKVYKCNRKELLLIPP 451 (522)
T ss_dssp CBCTTCEEEECCC-----CCEEEEEEEEEETTT-TEEEEEECSCB-TTBTTCEEEEECGGGEEEECS
T ss_pred ccCCCCEEEEecCCCCCCCCEEEEEEEEEeCCC-CEEEEeCCCCC-CCCCCCeeEEccHHHEEECCC
Confidence 3578999988732 35677888886665433 26888655433 23322 234999999999984
No 66
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=56.12 E-value=12 Score=24.59 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=21.5
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEcCC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNSLP 31 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~~p 31 (69)
+.|..|.+|||.. + -.+|.|.|...-
T Consensus 8 ~~f~~gekvl~~h-g-~llYeAKVl~v~ 33 (136)
T 2k3y_A 8 QEFALGGRVLAFH-G-PLMYEAKILKIW 33 (136)
T ss_dssp GSCCTTSEEEEEC-S-SCEEEEEEEEEE
T ss_pred cccCCCCEEEEEE-C-CeeEEEEEEEEE
Confidence 4799999999998 3 459999998644
No 67
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=53.01 E-value=22 Score=23.07 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=30.3
Q ss_pred EEEEEcCCC--CceecEEEEcCCCC-----CCCCeEE-EEccCCCCCCCCCCccccCcEEEee
Q psy6948 11 LLMALYPQT--TCFYKAIVNSLPTT-----GTDDYEL-LFEDNSYADNYAPPLGVPQRYVIAY 65 (69)
Q Consensus 11 ~VLAlYP~T--T~FY~A~V~~~p~~-----~~~~y~l-~FeDd~~~dG~sp~~~V~~ryVv~~ 65 (69)
+|.+++.++ +++|+|.|++|--. +.++|.| .|-|. .-..||++-|-++
T Consensus 15 kVV~V~~~~kk~~WfPALVVsPs~~d~v~vkKd~~LVRSFkDg-------Kf~sV~rkdv~e~ 70 (117)
T 2yrv_A 15 KVVSVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDS-------KFYSIARKDIKEV 70 (117)
T ss_dssp SEEEEECSSCSSCEEEEEEECCSSCSSCCCCTTCEEEEESSSC-------CEEEECTTTEECC
T ss_pred cEEEEecCCCCCceeeeEEECCCCCCCeeeccceEEEEeeccC-------eEEEEEhHhhhhc
Confidence 367788875 58999999998532 2356777 45552 1246666655443
No 68
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=50.65 E-value=15 Score=22.40 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCCCCCCCCEEEEEcCCCCceecEEEEcCCC---------CCCCCeEEEEccC
Q psy6948 2 DGSTIETKILLMALYPQTTCFYKAIVNSLPT---------TGTDDYELLFEDN 45 (69)
Q Consensus 2 ~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~---------~~~~~y~l~FeDd 45 (69)
.+..|..|++|+|--- .=-.++|.|..++. .....|.|.|=++
T Consensus 2 ~~~~~~~GdlVwaK~~-gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~ 53 (108)
T 2l89_A 2 ADDRLNFGDRILVKAP-GYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPD 53 (108)
T ss_dssp CSCCCCTTEEEEEECS-SSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTT
T ss_pred CCCcccCCCEEEEEeC-CcCCCceEecCcccCcHHHhhccCCCCeEEEEECCC
Confidence 3568999999999843 23478999977531 1234799999774
No 69
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=44.07 E-value=32 Score=23.42 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=33.7
Q ss_pred CCCCCCCEEEEEcCCCCceecEEEEc-CCCC----------------CCCCeEEEEccCC
Q psy6948 4 STIETKILLMALYPQTTCFYKAIVNS-LPTT----------------GTDDYELLFEDNS 46 (69)
Q Consensus 4 ~~f~~g~~VLAlYP~TT~FY~A~V~~-~p~~----------------~~~~y~l~FeDd~ 46 (69)
..|..|..|=|.=...-+.+.|.|+. ..+. ..-.|.|+|||..
T Consensus 9 glYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddyp 68 (161)
T 3db3_A 9 GLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYP 68 (161)
T ss_dssp CSSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCG
T ss_pred ceEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCc
Confidence 36889999999999999999999988 2221 1127999999874
No 70
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=31.12 E-value=54 Score=20.19 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCceecEEEEcCCCCC----CCCeEEEEcc
Q psy6948 8 TKILLMALYPQTTCFYKAIVNSLPTTG----TDDYELLFED 44 (69)
Q Consensus 8 ~g~~VLAlYP~TT~FY~A~V~~~p~~~----~~~y~l~FeD 44 (69)
.|.+||..-.+ -.+|+|.|.+.-... .-.|-|.|.+
T Consensus 17 ~~e~vlc~~~d-g~~yeAeIl~ir~~~~~~~~~~YYVHY~g 56 (92)
T 2bud_A 17 PDKIYFIRRED-GTVHRGQVLQSRTTENAAAPDEYYVHYVG 56 (92)
T ss_dssp TTSCEEEECTT-SCEEEEEEEEEECTTTCSSCCEEEEECSS
T ss_pred CCCEEEEEeCC-CCEEEEEEEEEeeccCCCCCcEEEEEeCC
Confidence 47899999963 469999999865432 3478898865
No 71
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=30.60 E-value=99 Score=19.21 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=32.8
Q ss_pred CCCCCCCCEEEEEcCCCC-ceecEEEEcCCCCCCCCeEEEEccCCC
Q psy6948 3 GSTIETKILLMALYPQTT-CFYKAIVNSLPTTGTDDYELLFEDNSY 47 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT-~FY~A~V~~~p~~~~~~y~l~FeDd~~ 47 (69)
...|.+|.++=|+=|.-. .++.|+|...- .....|+||+-++
T Consensus 11 ~~~F~~GMKLEAvD~~~p~~icvATV~~v~---g~rl~v~fDGw~~ 53 (107)
T 1wjq_A 11 PHGFQKKMKLEVVDKRNPMFIRVATVADTD---DHRVKVHFDGWNN 53 (107)
T ss_dssp SSSCCSSCEEEEECTTCTTCEEEEEEEEEC---SSCEEEECSSSCG
T ss_pred cccCCCCCEEEEEcCCCCCcEEeEEEEEec---CCEEEEEeCCCCC
Confidence 357999999999988854 58899999983 3358899987643
No 72
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=27.49 E-value=15 Score=24.98 Aligned_cols=15 Identities=40% Similarity=0.844 Sum_probs=13.3
Q ss_pred CCCCceecEEEEcCC
Q psy6948 17 PQTTCFYKAIVNSLP 31 (69)
Q Consensus 17 P~TT~FY~A~V~~~p 31 (69)
|+-||.||-.||.-|
T Consensus 182 ~~~TClYr~RVhG~~ 196 (198)
T 4dxt_A 182 PEYTCIYRFRVHGEP 196 (198)
T ss_dssp SSEEEECEEEEEEEC
T ss_pred CCcEEEEEEEEcCEe
Confidence 678999999999876
No 73
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=25.96 E-value=93 Score=20.58 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=23.1
Q ss_pred CCCCCEEEEEcCC---CCceecEEEE----cCCCCCCCCeEEEEccC
Q psy6948 6 IETKILLMALYPQ---TTCFYKAIVN----SLPTTGTDDYELLFEDN 45 (69)
Q Consensus 6 f~~g~~VLAlYP~---TT~FY~A~V~----~~p~~~~~~y~l~FeDd 45 (69)
-+.|+.||-++|+ ...|--+-+. .+|....+.+.++|.|-
T Consensus 61 P~vGeqV~v~f~~Gd~~~gvVlg~~~s~~~~~P~~~~~~~~~~~~dG 107 (211)
T 3qr8_A 61 PSVGEQVLILAVGGELDTAFVLPGIYSGDNPSPSVSADALHIRFPDG 107 (211)
T ss_dssp CCTTCEEEEEECCTTTCCEEEEEEECCSSSCCSCCCSSCEEEECTTS
T ss_pred CCCCCEEEEEeCCCccCccEEEeeecCcccCCCCCCCCeEEEEcCCC
Confidence 4689999999995 2333333322 23333445677777653
No 74
>2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D
Probab=24.76 E-value=44 Score=23.00 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=19.2
Q ss_pred cEEEEcCCCCCCCCeEEEEcc
Q psy6948 24 KAIVNSLPTTGTDDYELLFED 44 (69)
Q Consensus 24 ~A~V~~~p~~~~~~y~l~FeD 44 (69)
++.||..+.+...+++|+||.
T Consensus 109 ~GqvhR~~SQ~~EeWsVrFen 129 (187)
T 2gia_B 109 HGKVHRVASQRMEDWSVKFDN 129 (187)
T ss_dssp EEEECBTTCCCCEEEEEEEET
T ss_pred eeeEeechhhhhhhhheeecc
Confidence 689999999999999999975
No 75
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=24.27 E-value=97 Score=21.54 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=32.8
Q ss_pred CCCCCCCCEEEEEcCC-CCceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 3 GSTIETKILLMALYPQ-TTCFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~-TT~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
...|.+|.++=|+=|. .+.|+-|+|...- .+...|+|++.+
T Consensus 60 ~~~f~vGmKLEa~D~~~~~~~~vATV~~v~---g~~l~l~~dG~d 101 (243)
T 2biv_A 60 VNDFKVGMKLEARDPRNATSVCIATVIGIT---GARLRLRLDGSD 101 (243)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEE---TTEEEEEETTSC
T ss_pred cccccCCCEEEEecCCCCCcEEEEEEEEEe---CCEEEEEECCCC
Confidence 3579999999899887 4589999999883 246889998865
No 76
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=20.37 E-value=1.4e+02 Score=21.09 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCCCCCCCEEEEEcCCCC-ceecEEEEcCCCCCCCCeEEEEccCC
Q psy6948 3 GSTIETKILLMALYPQTT-CFYKAIVNSLPTTGTDDYELLFEDNS 46 (69)
Q Consensus 3 ~~~f~~g~~VLAlYP~TT-~FY~A~V~~~p~~~~~~y~l~FeDd~ 46 (69)
...|.+|.++=|+=|... .++.|+|...-. ..+.|+||+.+
T Consensus 32 ~~~F~vGMKLEavDp~~~~~icvATV~~v~g---~~l~l~~DG~d 73 (265)
T 2r58_A 32 NNDFKIGMKLEALDPRNVTSTCIATVVGVLG---SRLRLRLDGSD 73 (265)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEET---TEEEEEETTSC
T ss_pred ccccccCCEeEEecCCCCCCEEEEEEEEEeC---CEEEEEeCCCC
Confidence 357999999999988855 588899998853 36899998754
No 77
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.21 E-value=67 Score=17.85 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=14.5
Q ss_pred CCCCCCCCCCEEEEEcCCC
Q psy6948 1 MDGSTIETKILLMALYPQT 19 (69)
Q Consensus 1 ~~~~~f~~g~~VLAlYP~T 19 (69)
|....++.+..+.|||.-+
T Consensus 9 ~~~~~~~~~~~~~Alydy~ 27 (81)
T 1x6g_A 9 MPTRRWAPGTQCITKCEHT 27 (81)
T ss_dssp CCCCSCCTTCEEEESSCBS
T ss_pred cccCCCCCCCEEEECCCCC
Confidence 3455678899999999754
Done!