RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6948
(69 letters)
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium,
SGC, nucleus, transcription, transcription regulation,
chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo
sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A
3mew_A
Length = 180
Score = 90.0 bits (223), Expect = 6e-25
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 13 MALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKKS 68
+ALYPQTTCFY+A++++ P DDY +LFED SYAD Y+PPL V QRYV+A K+
Sbjct: 124 LALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEP 179
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.14
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 47 YADNYAPPLGV 57
YAD+ AP L +
Sbjct: 32 YADDSAPALAI 42
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA
associated factor 29; histone, tudor domain, histone
binding protei; HET: MLY MAL; 1.48A {Escherichia coli}
PDB: 3mp1_A* 3mp8_A*
Length = 522
Score = 28.3 bits (63), Expect = 0.15
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 8 TKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAYKK 67
TK+L A YP+TT FY AIV GT L F+ D V +R V+
Sbjct: 462 TKVL--ARYPETTTFYPAIVIGTKRDGT--CRLRFDGEEEVDKETE---VTRRLVLPSPT 514
Query: 68 SS 69
+
Sbjct: 515 AL 516
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase;
1.90A {Thermus thermophilus}
Length = 311
Score = 25.6 bits (57), Expect = 1.3
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 33 TGTDDYELLF----EDNSYADNYAPPLGVP 58
G +++E + E + + A G+P
Sbjct: 254 YGGEEFEAVLVVPQEGAAAVEARAKAKGLP 283
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus
flagellatus}
Length = 319
Score = 25.2 bits (56), Expect = 1.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 33 TGTDDYELLF 42
+G DDYEL F
Sbjct: 256 SGGDDYELCF 265
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure,
transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus}
SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A*
1vqv_A
Length = 342
Score = 24.9 bits (55), Expect = 2.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 33 TGTDDYELLF 42
G +DY+LLF
Sbjct: 293 FGGEDYQLLF 302
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone
modification; 1.56A {Homo sapiens}
Length = 123
Score = 24.6 bits (53), Expect = 2.6
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 22 FYKAIVNSLPTTGTDDYELLFEDNSYADNYAP 53
+Y V ++ + YE++F+D S++ + P
Sbjct: 22 YYSCRVMAVTSQTF--YEVMFDDGSFSRDTFP 51
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design,
medicinal CH inhibitor, biosynthetic protein; HET: AOD;
1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A*
3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Length = 185
Score = 24.8 bits (53), Expect = 2.8
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 24 KAIVNSLPTTGTDDYEL--LFEDNSYADNYAPPLGVPQR 60
K + + T G + LF ++ + G P
Sbjct: 45 KIVEQYMHTRGEARLKRHLLFTEDGVGGLWTTDSGQPIA 83
>1lbq_A Ferrochelatase; rossmann fold, PI-helix, lyase; 2.40A
{Saccharomyces cerevisiae} SCOP: c.92.1.1 PDB: 1l8x_A
Length = 362
Score = 24.1 bits (53), Expect = 5.0
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 9/28 (32%)
Query: 8 TKILLMALYPQTTCFYKAIVNSLPTTGT 35
K + + YP + S TTG+
Sbjct: 124 KKAVAFSQYPH----F-----SYSTTGS 142
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 23.3 bits (51), Expect = 7.3
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 9/28 (32%)
Query: 8 TKILLMALYPQTTCFYKAIVNSLPTTGT 35
+ + YPQ Y S TTG+
Sbjct: 119 ERAIAFTQYPQ----Y-----SCSTTGS 137
>1nfp_A LUXF gene product; flavin mononucleotide, myristate, flavoprotein;
HET: FMN MYR; 1.60A {Photobacterium leiognathi} SCOP:
c.1.16.2
Length = 228
Score = 23.2 bits (49), Expect = 8.5
Identities = 13/62 (20%), Positives = 21/62 (33%)
Query: 6 IETKILLMALYPQTTCFYKAIVNSLPTTGTDDYELLFEDNSYADNYAPPLGVPQRYVIAY 65
I+ I A TC + + D+ FE +N + + VI Y
Sbjct: 162 IDEIINSNAAGNFDTCLHHVAEMAQGLNNKVDFLFCFESMKDQENKKSLMINFDKRVINY 221
Query: 66 KK 67
+K
Sbjct: 222 RK 223
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 23.2 bits (51), Expect = 8.6
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 23 YKAIVNSLPTTGTDDYELLFED-NSYAD 49
+ +++S+ G D Y L+ D +Y +
Sbjct: 723 FDQMLHSIGKQGGDPY-LVMADFAAYVE 749
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.390
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,015,523
Number of extensions: 45519
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 13
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)