RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6948
         (69 letters)



>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 59

 Score = 27.1 bits (60), Expect = 0.053
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 22 FYKAIVNSLPTTGTDDYELLFEDNSYADNYAP 53
          FY+  V  L  T    YE+ F+D S++DN  P
Sbjct: 18 FYQCEVVRL--TTETFYEVNFDDGSFSDNLYP 47


>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
          INMT {Human (Homo sapiens) [TaxId: 9606]}
          Length = 257

 Score = 24.3 bits (51), Expect = 1.6
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 33 TGTDDYELLFEDNSYADNY 51
          TG D+Y+  F    Y   Y
Sbjct: 2  TGGDEYQKHFLPRDYLATY 20


>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3,
          TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 60

 Score = 23.2 bits (50), Expect = 1.9
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 13 MALYPQTTCFYKAIVNSLPTTGTDDYELLFED 44
           ALY +   FY+A V +L ++G     + F D
Sbjct: 10 FALYWEDNKFYRAEVEALHSSG-MTAVVKFTD 40


>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 309

 Score = 23.6 bits (50), Expect = 2.4
 Identities = 4/12 (33%), Positives = 8/12 (66%)

Query: 30 LPTTGTDDYELL 41
          L ++G  D+ L+
Sbjct: 16 LESSGAGDFHLI 27


>d1ryoa_ c.94.1.2 (A:) Transferrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 324

 Score = 22.7 bits (48), Expect = 6.0
 Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)

Query: 36  DDYELLFEDNSYA--DNYAPP 54
           D YELL  DN+    D Y   
Sbjct: 218 DQYELLCLDNTRKPVDEYKDC 238


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
           {Escherichia coli [TaxId: 562]}
          Length = 796

 Score = 22.3 bits (47), Expect = 7.9
 Identities = 5/27 (18%), Positives = 15/27 (55%)

Query: 23  YKAIVNSLPTTGTDDYELLFEDNSYAD 49
           +  +++S+   G D Y ++ +  +Y +
Sbjct: 723 FDQMLHSIGKQGGDPYLVMADFAAYVE 749


>d1lgbc_ c.94.1.2 (C:) Lactoferrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 159

 Score = 21.9 bits (46), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 2/20 (10%)

Query: 36  DDYELLFEDNSYA--DNYAP 53
           D+YELL  DN+    D +  
Sbjct: 135 DEYELLCPDNTRKPVDKFKD 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 247,434
Number of extensions: 8801
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 7
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)