BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy695
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
K GDF A L K+ K + P +IA+ I + L K ++ G
Sbjct: 37 KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEKLKLNLPEGIKDVKAVN-------G 84
Query: 107 FVNVFLSRV-YAGEQIKDIIVNGVQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
++NVF+ +A I DI+ G + + K +V+V+ +S N K +H+GH ++
Sbjct: 85 YINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAIL 144
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
Length = 607
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 97 IDKIEVAKPGFVNVFLS-RVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSSPNIAK 151
++K+E P F+ F + + A I DI+ G NKK V+++FSSPNIAK
Sbjct: 100 LEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKK--VIIEFSSPNIAK 156
Query: 152 EMHVGHLSRSLCHGW 166
H GHL ++ G+
Sbjct: 157 PFHAGHLRSTIIGGF 171
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|B Chain B, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|C Chain C, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
pdb|3GDZ|D Chain D, Crystal Structure Of Arginyl-Trna Synthetase From
Klebsiella Pneumoniae Subsp. Pneumoniae
Length = 109
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N A+ K P +A+ + S + L + +K+E+A PG
Sbjct: 38 QFGDYQANGVXAVAKKLGXA-----PRQLAEQVLSHL--------DLNGIANKVEIAGPG 84
Query: 107 FVNVFLSRVYAGEQI 121
F+N+FL + + +
Sbjct: 85 FINIFLDPAFLADNV 99
>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Ternary Complex With Product Bound (L)-Lactate
And Nadh.
pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
Coli: The Binary Complex With Nadph
Length = 479
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 33 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 92
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 93 LAKV 96
+A V
Sbjct: 222 VAMV 225
>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
Escherichia Coli
Length = 479
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 33 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 92
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 93 LAKV 96
+A V
Sbjct: 222 VAMV 225
>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
Length = 479
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 33 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 92
K A T V K +F N+A+A KI + G + F++ V ELA NP
Sbjct: 162 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAGNPK 221
Query: 93 LAKV 96
+A V
Sbjct: 222 VAMV 225
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 140 VLVDFSSPNIAKEMHVGHLSRSLCHG 165
VLV+ +S N KE+HVGHL R++ G
Sbjct: 105 VLVEHTSVNPNKELHVGHL-RNIALG 129
>pdb|3QSR|A Chain A, Crystal Structure Of Trichomonas Vaginalis Triosephosphate
Isomerase Tvag_497370 Gene (Ile-45 Variant)
Length = 255
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 55 DAMALCKIFKDKGEKKNPFDIAQSIASVV--------TSELATNPSLAKVIDKIEVAKPG 106
DA +CK+ +D K DIA + + +ELA P + + +PG
Sbjct: 184 DAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNELAAXPDVDGFLVGGASLEPG 243
Query: 107 FVNVFLSRVYA 117
F+N+ S V++
Sbjct: 244 FINIVNSNVHS 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,846,000
Number of Sequences: 62578
Number of extensions: 171647
Number of successful extensions: 523
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 14
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)