BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy695
(214 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VXN4|SYRC_DROME Probable arginine--tRNA ligase, cytoplasmic OS=Drosophila
melanogaster GN=Aats-arg PE=2 SV=1
Length = 665
Score = 137 bits (345), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 98/153 (64%), Gaps = 10/153 (6%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
S+ ++L VF A+ AFPE D +A N KFGD+QCN+AM L K K+KG
Sbjct: 78 SITEHLESVFRQAIASAFPEFRDTPVIIAPVNSTSA-KFGDYQCNNAMGLSKKLKEKGIN 136
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 129
K P DIA +EL + + +I+K+E+A GFVNVFLS+ YA + +++ NGV
Sbjct: 137 KAPRDIA--------TELKGHCPASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGV 188
Query: 130 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
+PP + KK RVLVDFSSPNIAK+MHVGHL ++
Sbjct: 189 KPPEVIKK-RVLVDFSSPNIAKQMHVGHLRSTI 220
>sp|Q5RA20|SYRC_PONAB Arginine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=RARS PE=2
SV=1
Length = 660
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%), Gaps = 11/161 (6%)
Query: 2 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
N P + ++V L +VF HA++ A+P+L + V + + KFGD+QCN AM + +
Sbjct: 67 NKPTKNMINVISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123
Query: 62 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 121
+ K K +K NP +IA++I T L N + I+K+E+A PGF+N+ L + + EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINIHLRKDFVSEQL 175
Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
++VNGVQ P L + +V+VDFSSPNIAKEMHVGHL ++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTI 216
>sp|P54136|SYRC_HUMAN Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=RARS PE=1
SV=2
Length = 660
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%), Gaps = 11/161 (6%)
Query: 2 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
N P + +++ L +VF HA++ A+P+L + V + + KFGD+QCN AM + +
Sbjct: 67 NKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQA---KFGDYQCNSAMGISQ 123
Query: 62 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 121
+ K K +K NP +IA++I T L N + I+K+E+A PGF+NV L + + EQ+
Sbjct: 124 MLKTKEQKVNPREIAENI----TKHLPDN----ECIEKVEIAGPGFINVHLRKDFVSEQL 175
Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
++VNGVQ P L + +V+VDFSSPNIAKEMHVGHL ++
Sbjct: 176 TSLLVNGVQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTI 216
>sp|P37880|SYRC_CRIGR Arginine--tRNA ligase, cytoplasmic OS=Cricetulus griseus GN=RARS
PE=2 SV=1
Length = 661
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 11/159 (6%)
Query: 4 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
P + +++ L DVF A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 70 PTKNMININSRLQDVFGCAIKAAYPDLDNPPLVVTPSQQP---KFGDYQCNSAMGISQML 126
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 123
K K +K NP IA++I T L N + ID++E+A PGF+NV L + + EQ+ +
Sbjct: 127 KAKEQKVNPRGIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 178
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
++VNG+Q P L + +V+VDFSSPNIAKEMHVGHL ++
Sbjct: 179 LLVNGIQLPALGENKKVIVDFSSPNIAKEMHVGHLRSTI 217
>sp|Q9D0I9|SYRC_MOUSE Arginine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Rars PE=2
SV=2
Length = 660
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 101/159 (63%), Gaps = 11/159 (6%)
Query: 4 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
P + +++ L +VF A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 69 PTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQP---KFGDYQCNSAMGISQML 125
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 123
K K +K +P +IA++I T L N K IDK+E+A PGF+NV L + + EQ+
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----KYIDKVEIAGPGFINVHLRKDFVSEQLTS 177
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
++VNGVQ P L K +V+VDFSSPNIAKEMHVGHL ++
Sbjct: 178 LLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTI 216
>sp|P40329|SYRC_RAT Arginine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Rars
PE=1 SV=2
Length = 660
Score = 127 bits (319), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 102/159 (64%), Gaps = 11/159 (6%)
Query: 4 PVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF 63
P + +++ L ++F A++ A+P+L + V + + KFGD+QCN AM + ++
Sbjct: 69 PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTPSQQP---KFGDYQCNSAMGISQML 125
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 123
K K +K +P +IA++I T L N + ID++E+A PGF+NV L + + EQ+ +
Sbjct: 126 KAKEQKVSPREIAENI----TKHLPNN----EYIDRVEIAGPGFINVHLRKDFVSEQLTN 177
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
++VNGVQ P L + +V+VDFSSPNIAKEMHVGHL ++
Sbjct: 178 LLVNGVQLPVLGENEKVIVDFSSPNIAKEMHVGHLRSTI 216
>sp|A7YW98|SYRC_BOVIN Arginine--tRNA ligase, cytoplasmic OS=Bos taurus GN=RARS PE=2 SV=1
Length = 660
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 102/161 (63%), Gaps = 11/161 (6%)
Query: 2 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCK 61
N P +++ L +VF A++ A+P L + V + + KFGD+QCN AM +C+
Sbjct: 67 NKPTKTMININSCLEEVFGCAIKAAYPVLENPPLIVTPSQQP---KFGDYQCNSAMGICQ 123
Query: 62 IFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI 121
+ K K +K NP +IA++I L N + I+K+E+A PGF+N+ L + + +Q+
Sbjct: 124 MLKTKEQKVNPREIAENI----VKHLPDN----EYIEKVEIAGPGFINIHLRKGFVSQQL 175
Query: 122 KDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
+++VNGV+ P++ + +V+VDFSSPNIAKEMHVGHL ++
Sbjct: 176 TNLLVNGVKIPSIGENKKVIVDFSSPNIAKEMHVGHLRSTI 216
>sp|Q5ZM11|SYRC_CHICK Arginine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=RARS PE=2
SV=1
Length = 661
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 101/159 (63%), Gaps = 12/159 (7%)
Query: 5 VSDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIF- 63
V +++ L ++F A+Q A+PEL + V + + KFGD+QCN AM + +I
Sbjct: 70 VKSMININSRLQEIFGAAIQAAYPELENPPLVVTPSQQP---KFGDYQCNSAMGITQILL 126
Query: 64 KDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKD 123
K K +K +P +IA+ I T + N + I+K+E+A PGF+NV L + + +Q+
Sbjct: 127 KTKEQKVSPREIAEKI----TKHIPAN----ECIEKVEIAGPGFINVHLRKDFVSKQLSS 178
Query: 124 IIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
++VNGVQPP + K+ +V++DFSSPNIAKEMHVGHL ++
Sbjct: 179 LLVNGVQPPAIGKRKKVILDFSSPNIAKEMHVGHLRSTI 217
>sp|Q6P1S4|SYRC_XENTR Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=rars
PE=2 SV=1
Length = 660
Score = 124 bits (310), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 98/149 (65%), Gaps = 13/149 (8%)
Query: 15 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFD 74
+ ++F A+ A+PEL + +V + + KFGD+QCN AMA+ ++ K +K +P +
Sbjct: 80 IQEIFGTAIGAAYPELQNAPLAVTPSQQP---KFGDYQCNSAMAITQMLKAMNQKVSPRE 136
Query: 75 IAQSIA-SVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPT 133
IA I ++ T+EL ++K+++A PGF+NV L + + +QI ++VNGVQPP
Sbjct: 137 IADKIVKNIPTNEL---------VEKVDIAGPGFINVHLHKDFTSKQISKLLVNGVQPPV 187
Query: 134 LNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
+ ++ +V+VDFSSPNIAKEMHVGHL ++
Sbjct: 188 IWERKKVVVDFSSPNIAKEMHVGHLRSTV 216
>sp|Q19825|SYRC_CAEEL Probable arginine--tRNA ligase, cytoplasmic OS=Caenorhabditis
elegans GN=rrt-1 PE=2 SV=2
Length = 713
Score = 104 bits (259), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 89/163 (54%), Gaps = 19/163 (11%)
Query: 7 DRMSVRDY-------LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMAL 59
D ++V DY L +F A++ AFP L D +A T +FGD+QCN AM +
Sbjct: 118 DYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-DVPLLLAETPNP---QFGDYQCNSAMPI 173
Query: 60 CKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE 119
K K P D+A+ I A P+ ++KI+V GF+N+FL+ Y
Sbjct: 174 AAKLKANKINKRPGDVAKEIQ-------AKLPTKIDFVEKIDVMPAGFINIFLNTDYLRR 226
Query: 120 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
QI + GV+ P L +K RVLVDFSSPNIAKEMHVGHL ++
Sbjct: 227 QISLLASEGVKLPKLTRK-RVLVDFSSPNIAKEMHVGHLRSTI 268
>sp|Q8RG14|SYR_FUSNN Arginine--tRNA ligase OS=Fusobacterium nucleatum subsp. nucleatum
(strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
GN=argS PE=3 SV=1
Length = 569
Score = 98.2 bits (243), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 83/151 (54%), Gaps = 21/151 (13%)
Query: 15 LSDVFTHAVQVAFP--ELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
L+D+F V+ FP EL +VA TNE FGD+QCN AM KI D NP
Sbjct: 8 LTDIFQKHVENLFPNKELKPVEITVA-TNEN----FGDYQCNFAMINSKIIGD-----NP 57
Query: 73 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPP 132
IA+ E+ N VI+K+EVA PGF+N+FLS Y IK I
Sbjct: 58 RKIAE--------EVKNNFPYGDVIEKLEVAGPGFINIFLSDKYISNSIKKI-GEDYDFS 108
Query: 133 TLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
LN+K +V++DFSSPNIAK MH+GHL ++
Sbjct: 109 FLNRKGKVIIDFSSPNIAKRMHIGHLRSTII 139
>sp|Q9Z7Y3|SYR_CHLPN Arginine--tRNA ligase OS=Chlamydia pneumoniae GN=argS PE=3 SV=1
Length = 561
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 23/156 (14%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
++ LS + + A+ AFP L D + + +++ FG +QCNDAM L ++ K
Sbjct: 3 TLLSILSVICSQAIAKAFPNLEDWAPEITPSTKEH---FGHYQCNDAMKLARVLK----- 54
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQI---KDIIV 126
K P ++IA + +EL P IE+A GF+N S V+ +Q+ KD +
Sbjct: 55 KAP----RAIAEAIVAELPQEP-----FSLIEIAGAGFINFTFSPVFLNQQLEHFKDALK 105
Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
G Q +++ ++++DFSSPNIAK+MHVGHL ++
Sbjct: 106 LGFQ---VSQPKKIIIDFSSPNIAKDMHVGHLRSTI 138
>sp|Q3KLP4|SYR_CHLTA Arginine--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=argS PE=3 SV=1
Length = 563
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 23/156 (14%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
++ +L+ + + A+ AFPEL + T + + +++ FG +QCNDAM L ++ +
Sbjct: 3 TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLR----- 54
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 126
K+P IA+SI + + P IE+A GF+N S+ + Q++ +
Sbjct: 55 KSPRAIAESI----VAHIPPAP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105
Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
NG + + K V++DFSSPNIAK+MHVGHL ++
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTI 138
>sp|O84460|SYR_CHLTR Arginine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=argS PE=3 SV=1
Length = 563
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 23/156 (14%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
++ +L+ + + A+ AFPEL + T + + +++ FG +QCNDAM L ++
Sbjct: 3 TLLSFLTSLCSAAIHQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARVLH----- 54
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---IV 126
K+P IA+SI + + P IE+A GF+N S+ + Q++ +
Sbjct: 55 KSPRAIAESI----VAHIPPTP-----FSSIEIAGAGFINFTFSKEFLASQLQTFSKELA 105
Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
NG + + K V++DFSSPNIAK+MHVGHL ++
Sbjct: 106 NGFRAASPQK---VIIDFSSPNIAKDMHVGHLRSTI 138
>sp|Q15W53|SYR_PSEA6 Arginine--tRNA ligase OS=Pseudoalteromonas atlantica (strain T6c /
ATCC BAA-1087) GN=argS PE=3 SV=1
Length = 578
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 21/120 (17%)
Query: 48 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 107
FGD+Q N AMAL K+ K K P DIA+ I V L + +K+EVA PGF
Sbjct: 36 FGDYQFNGAMALAKVLKQK-----PRDIAEKIVEAV--------ELDGIAEKLEVAGPGF 82
Query: 108 VNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLR----VLVDFSSPNIAKEMHVGHLSRSLC 163
+N++LS+ + Q+ + P LN + + V+VD+SSPN+AKEMHVGHL ++
Sbjct: 83 INIYLSKEWLAAQLS----HAAADPRLNIESQPTKTVVVDYSSPNLAKEMHVGHLRTTII 138
>sp|Q6MEP4|SYR_PARUW Arginine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25)
GN=argS PE=3 SV=1
Length = 584
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 28/157 (17%)
Query: 15 LSDVFTHAVQVAFPELGDKTAS-----VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
L+++F A AFP+L + ST EK FG +Q N AM L K+ K
Sbjct: 8 LANLFQQATANAFPDLSVLDPNFQPEITPSTQEK----FGHYQFNSAMKLAKLLK----- 58
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN-- 127
KNP +A++I + +T L P L+K IE+A PGF+N+ S + + + DI++
Sbjct: 59 KNPRQVAEAIVNQLTDSL---PPLSK----IEIAGPGFINMTFSTDFLSKNL-DILLRDA 110
Query: 128 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
G+ P K ++++DFSSPN+AKEMHVGHL ++
Sbjct: 111 HFGIPFP--EKPEKIIIDFSSPNVAKEMHVGHLRSTV 145
>sp|B0JLI8|SYR_MICAN Arginine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843)
GN=argS PE=3 SV=1
Length = 585
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 20/128 (15%)
Query: 37 VASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIA-SVVTSELATNPSLAK 95
VA++N + FGD+QCN +++L K K K P ++A ++ ++ +L P
Sbjct: 32 VAASNPR----FGDYQCNISLSLAKELKQK-----PREVAATLLKNLEIDDLCQTP---- 78
Query: 96 VIDKIEVAKPGFVNVFLSRVYAGEQIKDIIV-NGVQPPTLNKKLRVLVDFSSPNIAKEMH 154
E+A PGF+N+ L Y Q+KD+I N + T N +++VDFSSPNIAKEMH
Sbjct: 79 -----EIAGPGFINLTLKPSYLETQLKDLITDNRLGVATANPSQKIIVDFSSPNIAKEMH 133
Query: 155 VGHLSRSL 162
VGHL ++
Sbjct: 134 VGHLRSTI 141
>sp|Q9PJT8|SYR_CHLMU Arginine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=argS PE=3 SV=1
Length = 563
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 17/153 (11%)
Query: 10 SVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEK 69
++ +L+ + + A++ AFPEL + T + + +++ FG +QCNDAM L + +
Sbjct: 3 TLLSFLTSLCSSAIRQAFPELEELTLDITPSTKEH---FGHYQCNDAMKLARALR----- 54
Query: 70 KNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGV 129
K+P ++IA + + + P IE+A GF+N S+ + Q++
Sbjct: 55 KSP----RAIAEEIVAHIPATP-----FSSIEIAGAGFINFTFSKEFLANQLQIFSQELA 105
Query: 130 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
+ ++ +V++DFSSPNIAK+MHVGHL ++
Sbjct: 106 KGFPVSSPQKVIIDFSSPNIAKDMHVGHLRSTI 138
>sp|Q10XL4|SYR_TRIEI Arginine--tRNA ligase OS=Trichodesmium erythraeum (strain IMS101)
GN=argS PE=3 SV=1
Length = 585
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 82/154 (53%), Gaps = 26/154 (16%)
Query: 15 LSDVFTHAVQVAFPE--LGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
L F A+ AF + +G V++TN K FGD+QCN AM+L K KDK
Sbjct: 8 LKSRFDKALITAFGQDLVGTDPMIVSTTNPK----FGDYQCNVAMSLAKKLKDK------ 57
Query: 73 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDII----VNG 128
++IA+ + + L N E+A PGF+N+ L Y ++ II +N
Sbjct: 58 ---PKAIATQIINNLNINDYFYPP----EIAGPGFINLSLKPEYIENCLETIIKDEKLN- 109
Query: 129 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
PT N + RV++DFSSPNIAKEMHVGHL ++
Sbjct: 110 -ISPTKNPQ-RVVIDFSSPNIAKEMHVGHLRSTI 141
>sp|Q55486|SYR_SYNY3 Arginine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=argS PE=3 SV=1
Length = 584
Score = 80.5 bits (197), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
+S+ L+D F A++ FP D T KFGDFQCN A+ L K
Sbjct: 2 VSILTQLNDHFAQALEGQFPS--DVTLPTPLVVPASNPKFGDFQCNIALPLAKQLG---- 55
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 128
+ P IA I V +L+++ + + +A PGF+N+ L Y GEQ+ + N
Sbjct: 56 -QPPRAIAMEIVDKV--------NLSEICEPLTIAGPGFINIKLLPDYLGEQLIKLQQNQ 106
Query: 129 VQPPTLNK-KLRVLVDFSSPNIAKEMHVGHLSRSL 162
+L K + R++VDFSSPNIAKEMHVGHL ++
Sbjct: 107 QLGVSLVKGEERIVVDFSSPNIAKEMHVGHLRSTI 141
>sp|Q2SMY0|SYR_HAHCH Arginine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=argS PE=3 SV=1
Length = 578
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 68/117 (58%), Gaps = 14/117 (11%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N M K K NP ++A + V+ L + +K+E+A PG
Sbjct: 35 QFGDYQANGVMGAAKALK-----MNPRELATKVLDVL--------DLGDMAEKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVNG-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
F+N+FLS+ + + ++ ++ + + P + K V+VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLSKDWMSQSLRQVLADPRLTIPLDSPKQTVVVDYSAPNLAKEMHVGHLRSTI 138
>sp|Q31CZ4|SYR_PROM9 Arginine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9312)
GN=argS PE=3 SV=1
Length = 604
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 16/122 (13%)
Query: 48 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 107
FGD+QCN + L KI+K K P +I++ + L N S++K+ +E+A PGF
Sbjct: 45 FGDYQCNVCLCLSKIYK-----KKPREISEDFVYL----LNKNKSISKLCKSLEIAGPGF 95
Query: 108 VNVFL-SRVYAGEQIKDIIVNGVQPPTLNKKL------RVLVDFSSPNIAKEMHVGHLSR 160
+N+ L V E +I P + K L +V+VDFSSPNIAKEMHVGHL
Sbjct: 96 INIKLKDEVLINEIKSNIQCPRAGIPLIKKDLDSGLSNKVIVDFSSPNIAKEMHVGHLRS 155
Query: 161 SL 162
++
Sbjct: 156 TI 157
>sp|C4K487|SYR_HAMD5 Arginine--tRNA ligase OS=Hamiltonella defensa subsp. Acyrthosiphon
pisum (strain 5AT) GN=argS PE=3 SV=1
Length = 576
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 86/158 (54%), Gaps = 23/158 (14%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M+++ +LSD HA+ +A G S A + +FGD+Q N M+ K +
Sbjct: 1 MNIQLFLSDRIRHALIMA----GAPDDSDAQLHPSTKAQFGDYQANGVMSAAK-----KQ 51
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 127
+ P ++A+ + + L+ + K+E+A PGF+N+FL+ + ++I+ + +
Sbjct: 52 RIPPRELAERVLE--------HLDLSDIAKKVEIAGPGFINIFLNEQWISQKIESVFIGP 103
Query: 128 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
G+ P T R+++D+S+PN+AKEMHVGHL ++
Sbjct: 104 KLGLTPVTPQ---RIVIDYSAPNVAKEMHVGHLRSTII 138
>sp|B4RU34|SYR_ALTMD Arginine--tRNA ligase OS=Alteromonas macleodii (strain DSM 17117 /
Deep ecotype) GN=argS PE=3 SV=1
Length = 576
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 26/158 (16%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M++ L + FT A+Q E+G + A V + +FG++Q N AMAL K K K
Sbjct: 1 MNIHALLVNRFTEALQ----EMGVENAPVPVSRSAR-PEFGEYQFNGAMALAKQLKQK-- 53
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ----IKDI 124
P DIA+ I V L + K+EVA PGF+NV L+ + Q + D
Sbjct: 54 ---PRDIAEKIVETV--------KLDDIASKLEVAGPGFINVHLNDAWLANQCELSLTDP 102
Query: 125 IVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
+ + P N ++VD+SSPN+AKEMHVGHL ++
Sbjct: 103 RLGIAKSPEQN----IVVDYSSPNLAKEMHVGHLRTTI 136
>sp|Q8Z5V7|SYR_SALTI Arginine--tRNA ligase OS=Salmonella typhi GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B5R142|SYR_SALEP Arginine--tRNA ligase OS=Salmonella enteritidis PT4 (strain
P125109) GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B5BH46|SYR_SALPK Arginine--tRNA ligase OS=Salmonella paratyphi A (strain AKU_12601)
GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|Q5PMZ2|SYR_SALPA Arginine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B0UUF1|SYR_HAES2 Arginine--tRNA ligase OS=Haemophilus somnus (strain 2336) GN=argS
PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA K NP D AQ + ++ L + +K+E+A PG
Sbjct: 35 QFGDYQANGIMATAKKLG-----LNPRDFAQKVLDLI--------DLKNIAEKMEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + + E I+ + + T+ + ++VD+SSPN+AKEMHVGHL ++
Sbjct: 82 FINIFLDKNWLAENIQVTLQDKKLGVTVEEIQTIVVDYSSPNVAKEMHVGHLRSTII 138
>sp|Q7NWM1|SYR_CHRVO Arginine--tRNA ligase OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=argS PE=3 SV=1
Length = 572
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 21/120 (17%)
Query: 48 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 107
FGD+Q N M K K NP +A+ + + + LA + DK+E+A PGF
Sbjct: 35 FGDYQANGVMGAAKALK-----TNPRALAEKVVAAL--------DLAGIADKVEIAGPGF 81
Query: 108 VNVFLSRVYAGEQ----IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
+N+ L+ Y + +KD + G+ P K LRV+V++SSPN+AKEMHVGHL S+
Sbjct: 82 INIHLAPEYLARRSEAALKDDKL-GIAPV---KPLRVMVEYSSPNLAKEMHVGHLRSSII 137
>sp|B5FSM1|SYR_SALDC Arginine--tRNA ligase OS=Salmonella dublin (strain CT_02021853)
GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B4TYT3|SYR_SALSV Arginine--tRNA ligase OS=Salmonella schwarzengrund (strain
CVM19633) GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|Q0I3B0|SYR_HAES1 Arginine--tRNA ligase OS=Haemophilus somnus (strain 129Pt) GN=argS
PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 13/117 (11%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA K NP D AQ + ++ L + +K+E+A PG
Sbjct: 35 QFGDYQANGIMATAKKLG-----LNPRDFAQKVLDLI--------DLKNIAEKMEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + + E I+ + + T+ + ++VD+SSPN+AKEMHVGHL ++
Sbjct: 82 FINIFLDKNWLAENIQVTLQDKKLGVTVEEIQTIVVDYSSPNVAKEMHVGHLRSTII 138
>sp|Q824H4|SYR_CHLCV Arginine--tRNA ligase OS=Chlamydophila caviae (strain GPIC) GN=argS
PE=3 SV=1
Length = 564
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 84/159 (52%), Gaps = 27/159 (16%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M++ YLS + A AFP++ + + + +++ FG +QCNDAM L + K
Sbjct: 3 MTLLSYLSSLCREATLSAFPQIDTFSPDITQSTKEH---FGHYQCNDAMKLARTLK---- 55
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDI---I 125
P IA++I + + E+ T+ IE+A GF+N S+ + +K +
Sbjct: 56 -MAPRAIAEAIVNHIPKEIFTS---------IEIAGAGFINFTFSKEFLNNSLKTFSEEL 105
Query: 126 VNG--VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
+G V+ P +V++DFSSPNIAK+MHVGHL ++
Sbjct: 106 SSGFRVKDPK-----KVVIDFSSPNIAKDMHVGHLRSTI 139
>sp|B5F3I0|SYR_SALA4 Arginine--tRNA ligase OS=Salmonella agona (strain SL483) GN=argS
PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASERLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|A9MUA9|SYR_SALPB Arginine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|P0CL51|SYR_SALTY Arginine--tRNA ligase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|E1WGF0|SYR_SALTS Arginine--tRNA ligase OS=Salmonella typhimurium (strain SL1344)
GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B4SVG0|SYR_SALNS Arginine--tRNA ligase OS=Salmonella newport (strain SL254) GN=argS
PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B4T808|SYR_SALHS Arginine--tRNA ligase OS=Salmonella heidelberg (strain SL476)
GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|Q57N89|SYR_SALCH Arginine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67)
GN=argS PE=3 SV=1
Length = 577
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLAEQVQQALASDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B5R8C8|SYR_SALG2 Arginine--tRNA ligase OS=Salmonella gallinarum (strain 287/91 /
NCTC 13346) GN=argS PE=3 SV=1
Length = 577
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 19/120 (15%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+Q N MA+ K P +A+ ++ T+ L+ + K+E+A PG
Sbjct: 35 QFGDYQANGMMAVAKKLG-----MAPRQLAE--------QVLTHLDLSGIASKVEIAGPG 81
Query: 107 FVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
F+N+FL + EQ++ + + GV PT + ++VD+S+PN+AKEMHVGHL ++
Sbjct: 82 FINIFLEPAFLSEQVQQALTSDRLGVSQPT---RQTIVVDYSAPNVAKEMHVGHLRSTII 138
>sp|B3PKE3|SYR_CELJU Arginine--tRNA ligase OS=Cellvibrio japonicus (strain Ueda107)
GN=argS PE=3 SV=1
Length = 579
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 20/156 (12%)
Query: 9 MSVRDYLSD-VFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG 67
M++RD L+ V P D A +A + FGD+Q N AM K
Sbjct: 1 MNIRDLLNQRVLAAMATCGVP--ADLPALIAPGKKA---GFGDYQANGAMGAAKAMG--- 52
Query: 68 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 127
NP D+A I + + E + DK+E+A PGF+N++L + G+QI +
Sbjct: 53 --TNPRDLAGKIVAALDLE--------GIADKLEIAGPGFINIYLKPAWLGKQIALAQTD 102
Query: 128 G-VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
+ P V++D+S PN+AKEMHVGHL ++
Sbjct: 103 ARLAVPQAEHAQTVVIDYSGPNLAKEMHVGHLRSTI 138
>sp|Q5N643|SYR_SYNP6 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC
6301 / SAUG 1402/1) GN=argS PE=3 SV=1
Length = 584
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 24/153 (15%)
Query: 15 LSDVFTHAVQVAF-PELGDK-TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
L D F A+ +F PE V +TN K FGD+Q N AM+L K + P
Sbjct: 8 LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58
Query: 73 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 129
IA++ L N +LA + + +A PGF+N L Y Q++ + + G+
Sbjct: 59 RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110
Query: 130 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
QP ++ RV+VDFSSPNIAKEMHVGHL ++
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTI 141
>sp|Q7V396|SYR_PROMP Arginine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=argS PE=3 SV=1
Length = 603
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 15/121 (12%)
Query: 48 FGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGF 107
FGD+QCN + L KI+K NP +IA IA + T L N ++ + + +E+A PGF
Sbjct: 45 FGDYQCNICLVLSKIYKS-----NPREIA--IAFIET--LKENKKISNLCENLEIAGPGF 95
Query: 108 VNVFLSRVYAGEQIKDII------VNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRS 161
+N+ L E IK I V + K +V+VDFSSPNIAKEMHVGHL +
Sbjct: 96 INIKLKNKVLIEAIKSNIKCPRAGVPLSHKNNIYSKKKVIVDFSSPNIAKEMHVGHLRST 155
Query: 162 L 162
+
Sbjct: 156 I 156
>sp|P57851|SYR_PASMU Arginine--tRNA ligase OS=Pasteurella multocida (strain Pm70)
GN=argS PE=3 SV=1
Length = 563
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 21/137 (15%)
Query: 31 GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 90
G T S A + +FGD+Q N MA K +NP + AQ + +
Sbjct: 5 GADTQSDALVRQSAKVQFGDYQANGIMAAAKKLG-----RNPREFAQQVIEQL------- 52
Query: 91 PSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN----GVQPPTLNKKLRVLVDFSS 146
L+++ +KIE+A PGF+N+FL + + EQI + VN G+Q + V+ D+SS
Sbjct: 53 -DLSEIAEKIEIAGPGFINLFLDKNWLAEQIS-LAVNDDKLGIQA---TETQTVVADYSS 107
Query: 147 PNIAKEMHVGHLSRSLC 163
PN+AKEMHVGHL ++
Sbjct: 108 PNVAKEMHVGHLRSTII 124
>sp|Q8KPU9|SYR_SYNE7 Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942)
GN=argS PE=3 SV=2
Length = 584
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 80/153 (52%), Gaps = 24/153 (15%)
Query: 15 LSDVFTHAVQVAF-PELGDK-TASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
L D F A+ +F PE V +TN K FGD+Q N AM+L K + P
Sbjct: 8 LRDRFQAALAASFGPEWAATDPLLVPATNPK----FGDYQSNVAMSLAKQLG-----QPP 58
Query: 73 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN---GV 129
IA++ L N +LA + + +A PGF+N L Y Q++ + + G+
Sbjct: 59 RAIAET--------LVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGI 110
Query: 130 QPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
QP ++ RV+VDFSSPNIAKEMHVGHL ++
Sbjct: 111 QP--VSPPQRVIVDFSSPNIAKEMHVGHLRSTI 141
>sp|B1XPX8|SYR_SYNP2 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=argS PE=3 SV=1
Length = 585
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 69/121 (57%), Gaps = 20/121 (16%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVV-TSELATNPSLAKVIDKIEVAKP 105
KFGD+Q N A++L KI K KNP +IAQSI + ++ NP+ +A P
Sbjct: 38 KFGDYQSNVALSLTKILK-----KNPREIAQSIIEALDIADTCENPT---------IAGP 83
Query: 106 GFVNVFLSRVYAGEQIKDIIVN---GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSL 162
GF+N L Y +K++ + ++P +K V+VDFSSPNIAKEMHVGHL ++
Sbjct: 84 GFINFSLKPSYLATLLKEVQQSDRLAIEPAENPQK--VIVDFSSPNIAKEMHVGHLRSTI 141
Query: 163 C 163
Sbjct: 142 I 142
>sp|A5UCH1|SYR_HAEIE Arginine--tRNA ligase OS=Haemophilus influenzae (strain PittEE)
GN=argS PE=3 SV=1
Length = 577
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 23/158 (14%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M+++ LSD A+ +A G + A + +FGD+Q N MA K
Sbjct: 1 MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 127
NP + AQ + N L+ + +K+E+A PGF+N+FL+ + +I + +
Sbjct: 53 -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103
Query: 128 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
G+Q K V++D+SSPN+AKEMHVGHL ++
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTII 138
>sp|Q4QL12|SYR_HAEI8 Arginine--tRNA ligase OS=Haemophilus influenzae (strain 86-028NP)
GN=argS PE=3 SV=1
Length = 577
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 23/158 (14%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M+++ LSD A+ +A G + A + +FGD+Q N MA K
Sbjct: 1 MNIQSILSDKIKQAMVIA----GADQSCDALVRQSGKPQFGDYQANGIMAAAKKLG---- 52
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN- 127
NP + AQ + N L+ + +K+E+A PGF+N+FL+ + +I + +
Sbjct: 53 -LNPREFAQKVLD--------NLQLSDIAEKLEIAGPGFINIFLNPTWLTTEISAALSHK 103
Query: 128 --GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163
G+Q K V++D+SSPN+AKEMHVGHL ++
Sbjct: 104 NLGIQA---TNKQTVVIDYSSPNVAKEMHVGHLRSTII 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.128 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,654,665
Number of Sequences: 539616
Number of extensions: 4439381
Number of successful extensions: 482703
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5959
Number of HSP's successfully gapped in prelim test: 723
Number of HSP's that attempted gapping in prelim test: 186232
Number of HSP's gapped (non-prelim): 146174
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)