Query psy695
Match_columns 214
No_of_seqs 142 out of 1186
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:52:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zue_A Arginyl-tRNA synthetase 99.9 1.8E-27 6.1E-32 229.8 13.0 139 9-165 3-146 (629)
2 1f7u_A Arginyl-tRNA synthetase 99.9 4.2E-25 1.4E-29 212.6 9.2 139 8-165 28-170 (607)
3 1iq0_A Arginyl-tRNA synthetase 99.9 1.4E-24 4.8E-29 208.1 5.9 128 11-165 2-130 (592)
4 3gdz_A Arginyl-tRNA synthetase 99.9 2.8E-21 9.6E-26 148.6 12.1 104 7-127 2-105 (109)
5 3fnr_A Arginyl-tRNA synthetase 99.2 1.4E-11 4.7E-16 115.3 4.5 56 110-165 1-57 (464)
6 3al0_C Glutamyl-tRNA(Gln) amid 97.1 0.00013 4.4E-09 70.1 1.7 54 110-165 101-154 (592)
7 1wkb_A Leucyl-tRNA synthetase; 95.5 0.0034 1.2E-07 61.7 1.1 29 137-165 33-61 (810)
8 2o5r_A Glutamyl-tRNA synthetas 95.4 0.0019 6.4E-08 60.5 -1.2 31 137-167 10-40 (481)
9 2d5b_A Methionyl-tRNA syntheta 95.1 0.0049 1.7E-07 57.0 0.8 28 138-165 3-30 (500)
10 2csx_A Methionyl-tRNA syntheta 94.9 0.0055 1.9E-07 56.7 0.6 29 137-165 4-32 (497)
11 3kfl_A Methionyl-tRNA syntheta 94.8 0.0058 2E-07 57.9 0.4 31 135-165 23-53 (564)
12 1li5_A Cysrs, cysteinyl-tRNA s 93.6 0.02 6.8E-07 53.0 1.4 30 136-165 19-48 (461)
13 4dlp_A Aminoacyl-tRNA syntheta 93.0 0.028 9.6E-07 52.6 1.3 30 136-165 23-52 (536)
14 3c8z_A Cysteinyl-tRNA syntheta 92.4 0.037 1.3E-06 50.4 1.3 29 137-165 37-65 (414)
15 2x1l_A Methionyl-tRNA syntheta 91.1 0.062 2.1E-06 49.9 1.3 30 136-165 10-39 (524)
16 1irx_A Lysyl-tRNA synthetase; 90.0 0.1 3.6E-06 48.7 1.7 40 116-165 4-46 (523)
17 3tqo_A Cysteinyl-tRNA syntheta 89.1 0.12 4E-06 48.2 1.4 30 136-165 22-51 (462)
18 3h99_A Methionyl-tRNA syntheta 88.7 0.13 4.4E-06 48.3 1.4 31 135-165 15-45 (560)
19 1ile_A Ilers, isoleucyl-tRNA s 88.3 0.088 3E-06 51.9 -0.1 29 137-165 37-65 (821)
20 2v0c_A Aminoacyl-tRNA syntheta 84.5 0.27 9.3E-06 49.0 1.1 29 136-165 32-60 (878)
21 1rqg_A Methionyl-tRNA syntheta 84.4 0.29 1E-05 47.7 1.3 28 138-165 2-30 (722)
22 4arc_A Leucine--tRNA ligase; l 83.8 0.95 3.3E-05 45.3 4.7 53 113-165 26-80 (880)
23 1gax_A Valrs, valyl-tRNA synth 83.7 0.35 1.2E-05 48.2 1.5 30 136-165 32-61 (862)
24 1ffy_A Isoleucyl-tRNA syntheta 82.6 0.27 9.1E-06 49.3 0.2 29 137-165 47-75 (917)
25 1nzj_A Hypothetical protein YA 82.0 0.3 1E-05 42.8 0.2 18 146-163 11-28 (298)
26 1wz2_A Leucyl-tRNA synthetase; 81.0 0.28 9.6E-06 49.3 -0.3 28 138-165 34-61 (967)
27 4gri_A Glutamate--tRNA ligase; 78.9 0.43 1.5E-05 44.8 0.2 25 138-163 23-47 (512)
28 3afh_A Glutamyl-tRNA synthetas 77.5 0.59 2E-05 43.7 0.7 24 139-163 25-48 (488)
29 3u1f_A Methionyl-tRNA syntheta 76.2 0.61 2.1E-05 43.2 0.4 30 136-165 7-36 (542)
30 2zd7_A VPS75, vacuolar protein 73.9 0.64 2.2E-05 40.1 -0.1 10 105-114 101-111 (264)
31 1j09_A Glutamyl-tRNA synthetas 72.5 0.8 2.7E-05 42.6 0.2 18 146-163 7-24 (468)
32 4g6z_A Glutamate-tRNA ligase; 69.9 1.2 4E-05 41.8 0.7 25 138-163 24-48 (490)
33 2ja2_A Glutamyl-tRNA synthetas 68.6 1.1 3.8E-05 42.0 0.2 24 139-163 6-29 (498)
34 1qtq_A GLNRS, protein (glutami 67.9 1.2 4E-05 42.5 0.2 42 115-164 9-50 (553)
35 3aii_A Glutamyl-tRNA synthetas 65.7 1.4 4.6E-05 42.0 0.2 25 139-164 96-120 (553)
36 2cfo_A Glutamyl-tRNA synthetas 64.9 1.4 4.9E-05 41.1 0.2 18 146-163 7-24 (492)
37 2hz7_A Glutaminyl-tRNA synthet 58.0 2.3 7.7E-05 42.5 0.2 42 115-164 49-90 (851)
38 2ayu_A Nucleosome assembly pro 55.5 1.5 5E-05 40.4 -1.5 17 96-112 213-235 (417)
39 1iio_A Conserved hypothetical 48.7 4.1 0.00014 29.4 0.3 74 8-82 5-81 (84)
40 1qy5_A Endoplasmin; GRP94, NEC 34.8 8 0.00027 33.2 -0.1 9 136-144 175-183 (269)
41 2ayu_A Nucleosome assembly pro 31.7 10 0.00035 34.8 0.1 8 137-144 228-235 (417)
42 3sp1_A Cysteinyl-tRNA syntheta 30.7 14 0.00049 34.5 0.9 27 139-165 42-68 (501)
43 2cq1_A PTB-like protein L; RRM 27.6 1.6E+02 0.0054 20.6 6.0 56 95-155 40-98 (101)
44 3bbo_G Ribosomal protein L4; l 20.2 22 0.00074 31.1 0.0 10 115-124 188-197 (293)
No 1
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.94 E-value=1.8e-27 Score=229.80 Aligned_cols=139 Identities=25% Similarity=0.450 Sum_probs=118.1
Q ss_pred ccHHHHHHHHHHHHHHHhCCccCCCccccccCccccccccccchhhHHHHHHHHhcccCCCCChHHHHHHHHHhhhhhhc
Q psy695 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELA 88 (214)
Q Consensus 9 m~i~~~~~~~i~~aI~~a~~~~~~~~i~v~~~~~~~~~~~GDy~~n~A~~lak~lk~~~~~~~P~eiA~~i~~~~~~el~ 88 (214)
|++++.+...|..++....... ...+.|+.|+++ .|||||||+||.|||.++ ++|++||+.|++. |.
T Consensus 3 ~~~~~~i~~~~~~a~~~~~~~~-~~~~~v~~~~~~---~~GD~~~n~a~~lak~~~-----~~P~~iA~~i~~~----l~ 69 (629)
T 2zue_A 3 MEIRESVKERIEEIIKEIAPQW-EGEIELKETPDP---KLGDFGTPIAFKLAKLLK-----RPPIEIAEKIVEK----LK 69 (629)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTC-CCCCCCEECSSG---GGCSEEECHHHHHHHHHT-----SCHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHhcCccc-cccceeeCCCCC---CCCceeHHHHHHHHHHcC-----CCHHHHHHHHHHH----hh
Confidence 5778888888888888764322 234568888888 999999999999999997 8999999999999 75
Q ss_pred c--CCccccccceeEEecCeEEEEEeCHHHHH-HHHHHHHHcCCCCCC--CCCCeeEEEeecCcccccccccccchhhhh
Q psy695 89 T--NPSLAKVIDKIEVAKPGFVNVFLSRVYAG-EQIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 89 ~--~~~~~~~i~~v~iagpGFIN~~l~~~~~~-~~l~~i~~~~~~~~~--~~~~~~V~IEf~Spn~~~~~hvgh~R~~~l 163 (214)
. . ++|++++++| |||||+|++.++. ..+..++..+..||. .+++++|+|||+||||++++||||+|++++
T Consensus 70 ~~~~----~~i~~vevag-GfiN~~l~~~~~~~~~~~~i~~~~~~yG~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~ii 144 (629)
T 2zue_A 70 LNLP----EGIKDVKAVN-GYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAIL 144 (629)
T ss_dssp TSCC----TTEEEEEEET-TEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHH
T ss_pred hccC----CCeEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcchhcCCCccCCCCEEEEEeeCCCCCCCCccchhHHHHH
Confidence 4 4 6799999999 9999999999555 567777877888875 357889999999999999999999999998
Q ss_pred cc
Q psy695 164 HG 165 (214)
Q Consensus 164 g~ 165 (214)
|+
T Consensus 145 gD 146 (629)
T 2zue_A 145 GD 146 (629)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 2
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.91 E-value=4.2e-25 Score=212.57 Aligned_cols=139 Identities=24% Similarity=0.379 Sum_probs=115.2
Q ss_pred cccHHHHHHHHHHHHHHHhCCcc-CCCccccccCccccccccccchhhHHHHHHHHhcccCCCCChHHHHHHHHHhhhhh
Q psy695 8 RMSVRDYLSDVFTHAVQVAFPEL-GDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 86 (214)
Q Consensus 8 ~m~i~~~~~~~i~~aI~~a~~~~-~~~~i~v~~~~~~~~~~~GDy~~n~A~~lak~lk~~~~~~~P~eiA~~i~~~~~~e 86 (214)
.|++.+.++..|..+|..+++.. ......|+.|+++ .||||+||++| +|.++ ++|++||+.|++.
T Consensus 28 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~---~~GD~a~~~~~--~k~~~-----~~P~~iA~~i~~~---- 93 (607)
T 1f7u_A 28 DVNIVDLMRNYISQELSKISGVDSSLIFPALEWTNTM---ERGDLLIPIPR--LRIKG-----ANPKDLAVQWAEK---- 93 (607)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSG---GGCSEEEEGGG--GCCTT-----CCHHHHHHHHHHT----
T ss_pred cccHHHHHHHHHHHHHHHHhCCCccccccceeCCCCC---CCCchhhHHHH--HHhcC-----CCHHHHHHHHHHh----
Confidence 57899999999999999986521 1123357788888 99999998655 26554 8999999999999
Q ss_pred hccCCccccccceeEEecCeEEEEEeCHHHHHH-HHHHHHHcCCCCCC--CCCCeeEEEeecCcccccccccccchhhhh
Q psy695 87 LATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGE-QIKDIIVNGVQPPT--LNKKLRVLVDFSSPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 87 l~~~~~~~~~i~~v~iagpGFIN~~l~~~~~~~-~l~~i~~~~~~~~~--~~~~~~V~IEf~Spn~~~~~hvgh~R~~~l 163 (214)
|+.. ++|++++++|| ||||+|++.++.+ .+..++..+..||. .+++++|+|||+||||++||||||+|++++
T Consensus 94 l~~~----~~i~~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~ii 168 (607)
T 1f7u_A 94 FPCG----DFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTII 168 (607)
T ss_dssp CCCT----TTEEEEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHH
T ss_pred cccc----CceeEEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHH
Confidence 7654 68999999995 9999999999996 56667777778875 357889999999999999999999999998
Q ss_pred cc
Q psy695 164 HG 165 (214)
Q Consensus 164 g~ 165 (214)
|+
T Consensus 169 GD 170 (607)
T 1f7u_A 169 GG 170 (607)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.90 E-value=1.4e-24 Score=208.05 Aligned_cols=128 Identities=26% Similarity=0.306 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHhCCccCCCccccccCccccccccccchhhHHHHHHHHhcccCCCCChHHHHHHHHHhhhhhhccC
Q psy695 11 VRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATN 90 (214)
Q Consensus 11 i~~~~~~~i~~aI~~a~~~~~~~~i~v~~~~~~~~~~~GDy~~n~A~~lak~lk~~~~~~~P~eiA~~i~~~~~~el~~~ 90 (214)
+++.+...|..++...... ..+.|+.|+++ .+|||||| +|.|||.+| ++|++||+.|++. |...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~---~~gD~~~~-~~~lak~~~-----~~P~~iA~~i~~~----l~~~ 65 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGVP---VRLKVARAPKD---KPGDYGVP-LFALAKELR-----KPPQAIAQELKDR----LPLP 65 (592)
T ss_dssp CHHHHHHHHHHHHHTTSCC---CCCCCEECSTT---SSCSEEEE-CSHHHHHTT-----SCHHHHHHHHHHT----CCCC
T ss_pred hHHHHHHHHHHHHHhcCCC---ccceeeCCCCC---CCCcchhh-HHHHHHHcC-----CCHHHHHHHHHHh----cccc
Confidence 4566777777777754221 34557888888 99999999 599999997 8999999999999 7644
Q ss_pred CccccccceeEEecCeEEEEEeCHHHHHHH-HHHHHHcCCCCCCCCCCeeEEEeecCcccccccccccchhhhhcc
Q psy695 91 PSLAKVIDKIEVAKPGFVNVFLSRVYAGEQ-IKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 91 ~~~~~~i~~v~iagpGFIN~~l~~~~~~~~-l~~i~~~~~~~~~~~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
++|++++++| |||||+|++.++... +..++..+..|| +|+|||+||||++++||||+|++++|+
T Consensus 66 ----~~~~~~~~~g-gfiN~~l~~~~~~~~~~~~~~~~~~~~g------~v~ve~~spn~~~~~HiGH~R~~iigD 130 (592)
T 1iq0_A 66 ----EFVEEAVPVG-GYLNFRLRTEALLREALRPKAPFPRRPG------VVLVEHTSVNPNKELHVGHLRNIALGD 130 (592)
T ss_dssp ----TTEEEEEEET-TEEEEEECHHHHHHHHHSCCCCCCCEEE------EEEEECCCCCTTSCCBHHHHHHHHHHH
T ss_pred ----CcEEEEEEcC-CEEEEEECHHHHHHHHHHHHHhcCcccC------eEEEEeeCCCCCCCCcchHHHHHHHHH
Confidence 6899999999 999999999966654 444444555554 899999999999999999999999765
No 4
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.86 E-value=2.8e-21 Score=148.64 Aligned_cols=104 Identities=28% Similarity=0.513 Sum_probs=89.8
Q ss_pred ccccHHHHHHHHHHHHHHHhCCccCCCccccccCccccccccccchhhHHHHHHHHhcccCCCCChHHHHHHHHHhhhhh
Q psy695 7 DRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSE 86 (214)
Q Consensus 7 ~~m~i~~~~~~~i~~aI~~a~~~~~~~~i~v~~~~~~~~~~~GDy~~n~A~~lak~lk~~~~~~~P~eiA~~i~~~~~~e 86 (214)
..|++++.+...|..++....... ...+.|+.|+++ .|||||||+||.|||.+| ++|++||+.|+..
T Consensus 2 ~~M~i~~~l~~~i~~al~~~~~~~-~~~~~ve~p~~~---~~GD~a~n~a~~lak~~~-----~~P~~iA~~i~~~---- 68 (109)
T 3gdz_A 2 NAMNIQALLSEKVSQALIAAGAPA-DCEPQVRQSAKV---QFGDYQANGVMAVAKKLG-----MAPRQLAEQVLSH---- 68 (109)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTCCT-TCCCCEEECSSG---GGCSEEECCHHHHHHHTT-----SCHHHHHHHHHHH----
T ss_pred CccCHHHHHHHHHHHHHHHcCCCc-cCCceeecCCCC---CcceeecHHHHHHHHHhC-----CCHHHHHHHHHHh----
Confidence 369999999999999998763211 234677888888 999999999999999997 8999999999999
Q ss_pred hccCCccccccceeEEecCeEEEEEeCHHHHHHHHHHHHHc
Q psy695 87 LATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVN 127 (214)
Q Consensus 87 l~~~~~~~~~i~~v~iagpGFIN~~l~~~~~~~~l~~i~~~ 127 (214)
|... ++|++++++|||||||+|++.|+.+.|..|+..
T Consensus 69 l~~~----~~i~~vevagpGFINf~l~~~~~~~~l~~il~~ 105 (109)
T 3gdz_A 69 LDLN----GIANKVEIAGPGFINIFLDPAFLADNVNRALQS 105 (109)
T ss_dssp CCCT----TTEEEEEEETTTEEEEEECHHHHHHHHHHHHTT
T ss_pred cCcC----CcEeEEEEeCCCeEEEEECHHHHHHHHHHHHhc
Confidence 7655 689999999999999999999999999998854
No 5
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.16 E-value=1.4e-11 Score=115.35 Aligned_cols=56 Identities=20% Similarity=0.303 Sum_probs=48.9
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCCCC-CCCeeEEEeecCcccccccccccchhhhhcc
Q psy695 110 VFLSRVYAGEQIKDIIVNGVQPPTL-NKKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 110 ~~l~~~~~~~~l~~i~~~~~~~~~~-~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
|+|++.|+...|..|+..+..||.. .++++|+|||+||||++|||+||+|++++|+
T Consensus 1 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd 57 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGD 57 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCCCCSCEEEEECCCCCSSSSCBGGGHHHHHHHH
T ss_pred CEECHHHHHHHHHHHHHhHHhcCCCCCCCCEEEEEeCCCCCCCCCccchhHHHHHHH
Confidence 6899999999999999888888763 2688999999999999999999999999865
No 6
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.11 E-value=0.00013 Score=70.11 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=29.8
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCCCCCCCeeEEEeecCcccccccccccchhhhhcc
Q psy695 110 VFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 110 ~~l~~~~~~~~l~~i~~~~~~~~~~~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
..-...|+...|..++..|..|+.. ..++|++.|+ |+|+++||+||+|++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~RFa-PsPTG~LHiG~artAl~n~ 154 (592)
T 3al0_C 101 SGSGSMFITGAFFDILEVGPKKIRR-CFELVRVRFA-PSPTGHLHVGGARTALFNW 154 (592)
T ss_dssp -------------------CCCCCC-CCCCCEEEEC-CCSSSCCBHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHcChhhccc-CCCeEEEEEC-CCCCCCccHHHHHHHHHHH
Confidence 4445668888999999999888764 3467999999 9999999999999888754
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=95.48 E-value=0.0034 Score=61.73 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=26.9
Q ss_pred CeeEEEeecCcccccccccccchhhhhcc
Q psy695 137 KLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 137 ~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+++++|.+.+||+++++|+||+|+.+++|
T Consensus 33 ~~~~~i~~~~Py~nG~lHiGH~~~~~~~D 61 (810)
T 1wkb_A 33 EKKFYITVAFPYLSGHLHVGHARTYTIPD 61 (810)
T ss_dssp GGEEEEEECCCBTTSCCBHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCCCccccchhHHHHH
Confidence 46899999999999999999999999866
No 8
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=95.35 E-value=0.0019 Score=60.54 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=25.3
Q ss_pred CeeEEEeecCcccccccccccchhhhhcccC
Q psy695 137 KLRVLVDFSSPNIAKEMHVGHLSRSLCHGWG 167 (214)
Q Consensus 137 ~~~V~IEf~Spn~~~~~hvgh~R~~~lg~w~ 167 (214)
.-.|++.+.+|||+++||+||+|+++++...
T Consensus 10 ~~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~ 40 (481)
T 2o5r_A 10 HHHMVRVRFAPSPTGFLHVGGARTALFNFLF 40 (481)
T ss_dssp ---CCEEEECCCCCSCCBHHHHHHHHHHHHH
T ss_pred cceEEEEEECCCCCCCcCHHHHHHHHHHHHH
Confidence 3468999999999999999999999886543
No 9
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=95.10 E-value=0.0049 Score=56.96 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=26.1
Q ss_pred eeEEEeecCcccccccccccchhhhhcc
Q psy695 138 LRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 138 ~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+++.|.+.+|||++++|+||+|+.+++|
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D 30 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVAD 30 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHH
Confidence 5799999999999999999999999866
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=94.91 E-value=0.0055 Score=56.68 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=26.8
Q ss_pred CeeEEEeecCcccccccccccchhhhhcc
Q psy695 137 KLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 137 ~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+++++|...+|||++++|+||+|+.+++|
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D 32 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAAD 32 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHH
Confidence 46899999999999999999999998866
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=94.79 E-value=0.0058 Score=57.86 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=27.7
Q ss_pred CCCeeEEEeecCcccccccccccchhhhhcc
Q psy695 135 NKKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 135 ~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
.+++++.|...+|+|++++||||+|+.+++|
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D 53 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVD 53 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHH
Confidence 3567899999999999999999999999876
No 12
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=93.60 E-value=0.02 Score=53.05 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=26.8
Q ss_pred CCeeEEEeecCcccccccccccchhhhhcc
Q psy695 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 136 ~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
.+.+|.+.+++|++.+++||||+|+.++.+
T Consensus 19 ~~~~v~~yv~gPt~y~~~HiGHar~~v~~D 48 (461)
T 1li5_A 19 HAGEVGMYVCGITVYDLCHIGHGRTFVAFD 48 (461)
T ss_dssp STTEEEEEECCCBSSSCCBHHHHHHHHHHH
T ss_pred CCCCeeEEEcCCcCCCCCcccccHHHHHHH
Confidence 356799999999999999999999998865
No 13
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=92.97 E-value=0.028 Score=52.59 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=26.6
Q ss_pred CCeeEEEeecCcccccccccccchhhhhcc
Q psy695 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 136 ~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+++++.|-...|+|++++|+||+|+.+++|
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D 52 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATD 52 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHH
Confidence 345899999999999999999999998865
No 14
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=92.43 E-value=0.037 Score=50.35 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=26.2
Q ss_pred CeeEEEeecCcccccccccccchhhhhcc
Q psy695 137 KLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 137 ~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+.+|.+..++|++.+++||||+|+.+++|
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar~~v~~D 65 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFD 65 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHH
T ss_pred CCCceEEeCCCcCCCCcCccccHHHHHHH
Confidence 45689999999999999999999999876
No 15
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=91.13 E-value=0.062 Score=49.90 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=26.3
Q ss_pred CCeeEEEeecCcccccccccccchhhhhcc
Q psy695 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 136 ~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
..+++.|--.-||+++++|+||+|+.+++|
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D 39 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATD 39 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHH
Confidence 456799999999999999999999999876
No 16
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=89.98 E-value=0.1 Score=48.73 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCeeEEEeecC---cccccccccccchhhhhcc
Q psy695 116 YAGEQIKDIIVNGVQPPTLNKKLRVLVDFSS---PNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 116 ~~~~~l~~i~~~~~~~~~~~~~~~V~IEf~S---pn~~~~~hvgh~R~~~lg~ 165 (214)
|....+..++..+.. ++ +|++ |+|++++||||+|++++.+
T Consensus 4 W~~~~a~~~~~~~~~------~~----~yv~~tgPsPtG~lHIGhaR~al~~D 46 (523)
T 1irx_A 4 WADYIADKIIRERGE------KE----KYVVESGITPSGYVHVGNFRELFTAY 46 (523)
T ss_dssp HHHHHHHHHHHHSCC------CS----EEEEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCC------CC----eEEECCCCCCCCCcccCCcHHHHHHH
Confidence 444556666654321 22 4666 9999999999999988764
No 17
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=89.14 E-value=0.12 Score=48.21 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=26.7
Q ss_pred CCeeEEEeecCcccccccccccchhhhhcc
Q psy695 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 136 ~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
.+.+|.+-+++|++.+++|+||+|+.++.|
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~~v~~D 51 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRSWIIFD 51 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHHHHHHH
Confidence 456799999999999999999999988765
No 18
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=88.74 E-value=0.13 Score=48.30 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCCeeEEEeecCcccccccccccchhhhhcc
Q psy695 135 NKKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 135 ~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+.++++.|=-..|+|++++|+||+|+.+++|
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D 45 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLEHIQAD 45 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHHHHHHH
Confidence 3467889988899999999999999999876
No 19
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=88.31 E-value=0.088 Score=51.92 Aligned_cols=29 Identities=24% Similarity=0.179 Sum_probs=25.6
Q ss_pred CeeEEEeecCcccccccccccchhhhhcc
Q psy695 137 KLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 137 ~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+++.+|-...||+++.+|+||+|+.+++|
T Consensus 37 ~~~f~i~~~pPy~nG~lHiGH~~~~~~~D 65 (821)
T 1ile_A 37 GPRYTVYEGPPTANGLPHVGHAQARSYKD 65 (821)
T ss_dssp SCBCCBCCCCCCTTSCCCTTHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCCchhhhHhHHHHH
Confidence 45678888999999999999999999866
No 20
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=84.49 E-value=0.27 Score=49.01 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=22.5
Q ss_pred CCeeEEEeecCcccccccccccchhhhhcc
Q psy695 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 136 ~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+++.++++ ..|+|++.+|+||+|+.+++|
T Consensus 32 ~~k~~v~~-~~Py~nG~lHiGHa~~~~~~D 60 (878)
T 2v0c_A 32 RGKQYVLV-MFPYPSGDLHMGHLKNYTMGD 60 (878)
T ss_dssp --EEEEEE-CCCCCSSCCBHHHHHHHHHHH
T ss_pred CCCEEEEC-CCCCCCCCcchhhhHHHHHHH
Confidence 34445555 589999999999999999866
No 21
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=84.42 E-value=0.29 Score=47.65 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.7
Q ss_pred eeEEEeecCcccccccccccchh-hhhcc
Q psy695 138 LRVLVDFSSPNIAKEMHVGHLSR-SLCHG 165 (214)
Q Consensus 138 ~~V~IEf~Spn~~~~~hvgh~R~-~~lg~ 165 (214)
++++|-...|++++.+|+||+|+ .++.|
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~D 30 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPAD 30 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHH
Confidence 47899999999999999999998 67644
No 22
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=83.76 E-value=0.95 Score=45.26 Aligned_cols=53 Identities=9% Similarity=-0.030 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCC-C-CCCeeEEEeecCcccccccccccchhhhhcc
Q psy695 113 SRVYAGEQIKDIIVNGVQPPT-L-NKKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 113 ~~~~~~~~l~~i~~~~~~~~~-~-~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
++..+.......-.....|.. . ..+++..|=-..|+|++++|+||+|+.+++|
T Consensus 26 ~~~~iE~kw~~~W~~~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~D 80 (880)
T 4arc_A 26 RPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGD 80 (880)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHH
Confidence 444555444443333334422 1 1234555555789999999999999999866
No 23
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=83.67 E-value=0.35 Score=48.19 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.7
Q ss_pred CCeeEEEeecCcccccccccccchhhhhcc
Q psy695 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 136 ~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
.+++.+|-...||+++.+|+||+++.++.|
T Consensus 32 ~~~~f~i~~ppPy~nG~lHiGHa~~~~l~D 61 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQD 61 (862)
T ss_dssp CSCEEEEECCCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCCCcchhhhHHHHHHH
Confidence 356799999999999999999999999865
No 24
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=82.56 E-value=0.27 Score=49.31 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=26.0
Q ss_pred CeeEEEeecCcccccccccccchhhhhcc
Q psy695 137 KLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 137 ~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+++.+|-...|++++.+|+||+++.+++|
T Consensus 47 ~~~f~i~~~pPY~nG~lHiGHa~n~~~~D 75 (917)
T 1ffy_A 47 NETFILHDGPPYANGNLHMGHALNKILKD 75 (917)
T ss_dssp SCBCCEECCCCBSSSCCCHHHHHHHHHHH
T ss_pred CCceeeCCCCCCCCCcchHHHHHHHHHHH
Confidence 45688999999999999999999999866
No 25
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=82.05 E-value=0.3 Score=42.81 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=16.2
Q ss_pred Ccccccccccccchhhhh
Q psy695 146 SPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 146 Spn~~~~~hvgh~R~~~l 163 (214)
.|+|++++|+||+|++++
T Consensus 11 APsPtG~LHiG~~rtal~ 28 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALG 28 (298)
T ss_dssp CCCTTSCCCHHHHHHHHH
T ss_pred CcCCCCCccHHHHHHHHH
Confidence 599999999999997775
No 26
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=80.99 E-value=0.28 Score=49.31 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=25.7
Q ss_pred eeEEEeecCcccccccccccchhhhhcc
Q psy695 138 LRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 138 ~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
++.+|-...|++++.+|+||+++.+++|
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~D 61 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPD 61 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHH
Confidence 5788999999999999999999999865
No 27
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=78.94 E-value=0.43 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=19.5
Q ss_pred eeEEEeecCcccccccccccchhhhh
Q psy695 138 LRVLVDFSSPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 138 ~~V~IEf~Spn~~~~~hvgh~R~~~l 163 (214)
.+|.+=| .|+|+++||+||+|++++
T Consensus 23 ~~vrtRF-APsPtG~LHiG~artAl~ 47 (512)
T 4gri_A 23 LSTRVRY-APSPTGLQHIGGIRTALF 47 (512)
T ss_dssp -CCEEEE-CCCSSSCCBHHHHHHHHH
T ss_pred CceeEEe-CcCCCCcccHHHHHHHHH
Confidence 3455555 499999999999998776
No 28
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=77.55 E-value=0.59 Score=43.73 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.1
Q ss_pred eEEEeecCcccccccccccchhhhh
Q psy695 139 RVLVDFSSPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 139 ~V~IEf~Spn~~~~~hvgh~R~~~l 163 (214)
+|.+=|+ |.|++.||+||+|++++
T Consensus 25 ~v~~RFA-PsPtG~LHiG~~rtal~ 48 (488)
T 3afh_A 25 LVRVRFA-PSPTGHLHVGGARTALF 48 (488)
T ss_dssp CCEEEEC-CCCSSSCBHHHHHHHHH
T ss_pred CceEEEC-CCCCCCccHHHHHHHHH
Confidence 4667676 99999999999997765
No 29
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=76.17 E-value=0.61 Score=43.22 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=26.2
Q ss_pred CCeeEEEeecCcccccccccccchhhhhcc
Q psy695 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 136 ~~~~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+.|+..|.-.-|++++.+|+||+|+.++.|
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~D 36 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITD 36 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHH
Confidence 457788998889999999999999998755
No 30
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=73.93 E-value=0.64 Score=40.11 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=6.1
Q ss_pred CeEE-EEEeCH
Q psy695 105 PGFV-NVFLSR 114 (214)
Q Consensus 105 pGFI-N~~l~~ 114 (214)
.||- .|++++
T Consensus 101 ~gf~i~F~F~~ 111 (264)
T 2zd7_A 101 RDFSITFHFHG 111 (264)
T ss_dssp TCEEEEEEECC
T ss_pred CceEEEEEeCC
Confidence 3564 677765
No 31
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=72.50 E-value=0.8 Score=42.56 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=16.1
Q ss_pred Ccccccccccccchhhhh
Q psy695 146 SPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 146 Spn~~~~~hvgh~R~~~l 163 (214)
.|.|++.||+||+|++++
T Consensus 7 aPsPtG~LHiG~~rtal~ 24 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALF 24 (468)
T ss_dssp CCCCSSSCBHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHH
Confidence 489999999999997776
No 32
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=69.91 E-value=1.2 Score=41.78 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.1
Q ss_pred eeEEEeecCcccccccccccchhhhh
Q psy695 138 LRVLVDFSSPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 138 ~~V~IEf~Spn~~~~~hvgh~R~~~l 163 (214)
.+|.+=|+ |+|++.+|+||+|++++
T Consensus 24 ~~v~~RFA-PSPTG~lHiG~~rtal~ 48 (490)
T 4g6z_A 24 RPVRTRFA-PSPTGFIHLGNIRSALY 48 (490)
T ss_dssp CCCEEEEC-CCCCSCCBHHHHHHHHH
T ss_pred CCceEEeC-CCCCCCccHHHHHHHHH
Confidence 34777776 99999999999997776
No 33
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=68.63 E-value=1.1 Score=42.03 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=19.6
Q ss_pred eEEEeecCcccccccccccchhhhh
Q psy695 139 RVLVDFSSPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 139 ~V~IEf~Spn~~~~~hvgh~R~~~l 163 (214)
+|.+=|+ |.|++.||+||+|++++
T Consensus 6 ~vr~RFA-PsPTG~LHiG~~rtAL~ 29 (498)
T 2ja2_A 6 TVRVRFC-PSPTGTPHVGLVRTALF 29 (498)
T ss_dssp CCEEEEC-CCSSSSCBHHHHHHHHH
T ss_pred CeeEEEC-cCCCCCccHHHHHHHHH
Confidence 3666665 99999999999997765
No 34
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=67.87 E-value=1.2 Score=42.51 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCeeEEEeecCcccccccccccchhhhhc
Q psy695 115 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCH 164 (214)
Q Consensus 115 ~~~~~~l~~i~~~~~~~~~~~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg 164 (214)
.||.+.+..-+..|. + .+|+.=| .|.|++.+|+||+|++++-
T Consensus 9 ~fi~~~i~~dl~~~~-~------~~v~tRF-aPSPtG~LHIGhaRtal~n 50 (553)
T 1qtq_A 9 NFIRQIIDEDLASGK-H------TTVHTRF-PPEPNGYLHIGHAKSICLN 50 (553)
T ss_dssp CHHHHHHHHHHHHTS-C------SSCEEEE-CCCTTSCCBHHHHHHHHHH
T ss_pred hHHHHHHHhHhhcCC-c------CceEEEe-CCCCCCCccHHHHHHHHHH
Confidence 366666665555442 2 1344444 5899999999999988873
No 35
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=65.72 E-value=1.4 Score=42.02 Aligned_cols=25 Identities=28% Similarity=0.662 Sum_probs=20.1
Q ss_pred eEEEeecCcccccccccccchhhhhc
Q psy695 139 RVLVDFSSPNIAKEMHVGHLSRSLCH 164 (214)
Q Consensus 139 ~V~IEf~Spn~~~~~hvgh~R~~~lg 164 (214)
+|+.=| .|.|++.+|+||+|++++.
T Consensus 96 ~v~tRF-aPsPtG~LHIGhaRtal~n 120 (553)
T 3aii_A 96 EVVLRF-APNPSGPLHIGHARAAILN 120 (553)
T ss_dssp CCEEEE-CCCSSSSCBHHHHHHHHHH
T ss_pred ceEEEe-CCCCCCCccHHHHHHHHHH
Confidence 455555 4899999999999988874
No 36
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=64.92 E-value=1.4 Score=41.11 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=16.2
Q ss_pred Ccccccccccccchhhhh
Q psy695 146 SPNIAKEMHVGHLSRSLC 163 (214)
Q Consensus 146 Spn~~~~~hvgh~R~~~l 163 (214)
.|.|++.+|+||+|++++
T Consensus 7 APSPtG~lHiG~artal~ 24 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVF 24 (492)
T ss_dssp CCCTTSCCBHHHHHHHHH
T ss_pred CCCCCCCccHHHHHHHHH
Confidence 489999999999998776
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=57.95 E-value=2.3 Score=42.51 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCeeEEEeecCcccccccccccchhhhhc
Q psy695 115 VYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCH 164 (214)
Q Consensus 115 ~~~~~~l~~i~~~~~~~~~~~~~~~V~IEf~Spn~~~~~hvgh~R~~~lg 164 (214)
.|+.+.+..-+..|. + ++|+.=| .|.|++.+|+||+|++++.
T Consensus 49 ~fi~~ii~~dl~~g~-~------~~v~tRF-aPSPtG~LHIGhARtAL~n 90 (851)
T 2hz7_A 49 NFITEIIERDLEAGK-Y------PRVVTRF-PPDPSGYAHLGHVFASLLD 90 (851)
T ss_dssp CHHHHHHHHHHHTTS-C------SSCEEEE-CCCSSSCCBHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC-c------CceEEEe-CCCCCCCccHHHHHHHHHH
Confidence 466676665555432 1 2344433 5899999999999988873
No 38
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=55.47 E-value=1.5 Score=40.39 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=9.9
Q ss_pred ccceeEEe-----cCeEE-EEEe
Q psy695 96 VIDKIEVA-----KPGFV-NVFL 112 (214)
Q Consensus 96 ~i~~v~ia-----gpGFI-N~~l 112 (214)
++..|.+. .+||. .|++
T Consensus 213 ~L~DI~Ve~~~d~~~gF~L~F~F 235 (417)
T 2ayu_A 213 YLQDIGLEYLTDGRPGFKLLFRF 235 (417)
T ss_dssp GEEEEECCBCCSSSCEEEEEEEE
T ss_pred hccceEEEEccCCCcceEEEEEe
Confidence 44555542 45775 7777
No 39
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=48.67 E-value=4.1 Score=29.39 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=42.1
Q ss_pred cccHHHHHHHHHHHHHHHhCCccC-CCccccccCc-cccccccccchhhHHHHHHHHhcccCCC-CChHHHHHHHHHh
Q psy695 8 RMSVRDYLSDVFTHAVQVAFPELG-DKTASVASTN-EKYVHKFGDFQCNDAMALCKIFKDKGEK-KNPFDIAQSIASV 82 (214)
Q Consensus 8 ~m~i~~~~~~~i~~aI~~a~~~~~-~~~i~v~~~~-~~~~~~~GDy~~n~A~~lak~lk~~~~~-~~P~eiA~~i~~~ 82 (214)
.|+++..|...|..++..+--.+. .....-..|. .++.-+.||.... |+-+.|.++...++ +++.++|..|+.+
T Consensus 5 ~m~~~~ei~~qi~~a~~~a~FPI~s~~EL~~AlP~G~~t~c~~Gd~~~t-a~El~kll~~~DFP~ksA~~lAd~iv~r 81 (84)
T 1iio_A 5 KMGVKEDIRGQIIGALAGADFPINSPEELMAALPNGPDTTCKSGDVELK-ASDAGQVLTADDFPFKSAEEVADTIVNK 81 (84)
T ss_dssp CCSHHHHHHHHHHHHHTTSSSTTBHHHHHHHHCTTSSCCCCCBTTBCCC-TTTTGGGSCGGGSBCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCCCCCCHHHHHHhCCCCCCCceeeCCEeee-HHHHHhhCCcccCCCCCHHHHHHHHHHH
Confidence 588888888888888776631110 0011111111 1111134888777 78888777543333 4788888888765
No 40
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=34.82 E-value=8 Score=33.21 Aligned_cols=9 Identities=0% Similarity=0.106 Sum_probs=5.5
Q ss_pred CCeeEEEee
Q psy695 136 KKLRVLVDF 144 (214)
Q Consensus 136 ~~~~V~IEf 144 (214)
.|.+|.|..
T Consensus 175 ~GT~I~L~L 183 (269)
T 1qy5_A 175 RGTTITLVL 183 (269)
T ss_dssp SEEEEEEEE
T ss_pred CCeEEEEEE
Confidence 466677654
No 41
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=31.66 E-value=10 Score=34.78 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=4.3
Q ss_pred CeeEEEee
Q psy695 137 KLRVLVDF 144 (214)
Q Consensus 137 ~~~V~IEf 144 (214)
+-+|...|
T Consensus 228 gF~L~F~F 235 (417)
T 2ayu_A 228 GFKLLFRF 235 (417)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEe
Confidence 34555555
No 42
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=30.75 E-value=14 Score=34.50 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.4
Q ss_pred eEEEeecCcccccccccccchhhhhcc
Q psy695 139 RVLVDFSSPNIAKEMHVGHLSRSLCHG 165 (214)
Q Consensus 139 ~V~IEf~Spn~~~~~hvgh~R~~~lg~ 165 (214)
+|-+=.+.|++.+.+|+||+|+.++.|
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~D 68 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGD 68 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHH
Confidence 444545778888999999999988755
No 43
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.59 E-value=1.6e+02 Score=20.62 Aligned_cols=56 Identities=9% Similarity=0.049 Sum_probs=30.3
Q ss_pred cccceeEEe---cCeEEEEEeCHHHHHHHHHHHHHcCCCCCCCCCCeeEEEeecCccccccccc
Q psy695 95 KVIDKIEVA---KPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHV 155 (214)
Q Consensus 95 ~~i~~v~ia---gpGFIN~~l~~~~~~~~l~~i~~~~~~~~~~~~~~~V~IEf~Spn~~~~~hv 155 (214)
..|..|.+. |-|||.|.- .......+..+..++..+ .+++|.|.|+.+...+..+.
T Consensus 40 G~v~~v~i~~~kg~aFVef~~-~~~A~~Ai~~l~~~~~~~----~Gr~l~V~~a~~~~~~~~~~ 98 (101)
T 2cq1_A 40 GKVTNILMLKGKNQAFLELAT-EEAAITMVNYYSAVTPHL----RNQPIYIQYSNHKELKTSGP 98 (101)
T ss_dssp SCEEEEEEETTTTEEEEEESS-HHHHHHHHHHHHHSCCEE----TTEECEEEECSCSSCCCCCC
T ss_pred CCEEEEEEECCCCEEEEEECC-HHHHHHHHHHhccCCceE----CCcEEEEEEcCcccCcCCCC
Confidence 345566654 335666532 223334444333233221 57899999999887655443
No 44
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.24 E-value=22 Score=31.14 Aligned_cols=10 Identities=0% Similarity=-0.316 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q psy695 115 VYAGEQIKDI 124 (214)
Q Consensus 115 ~~~~~~l~~i 124 (214)
+.+...|..+
T Consensus 188 K~~~~~Lk~l 197 (293)
T 3bbo_G 188 KDFIAAMQRW 197 (293)
T ss_dssp HHHHTTHHHH
T ss_pred HHHHHHHHHc
Confidence 4555555543
Done!