RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy695
(214 letters)
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 126 bits (318), Expect = 8e-34
Identities = 64/151 (42%), Positives = 89/151 (58%), Gaps = 18/151 (11%)
Query: 15 LSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKG-EKKNPF 73
L+ +F ++++ P+ VA+ KFGD+QCN+AM L K KG KNP
Sbjct: 3 LAKLFEASLRLTVPDEPSVEPLVAACTNP---KFGDYQCNNAMGLWSKLKGKGTSFKNPR 59
Query: 74 DIAQSI-ASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQP- 131
+AQ+I ++ SE+ I+ VA PGFVNV LS + ++I+ ++V+G+
Sbjct: 60 AVAQAIVKNLPASEM---------IESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTW 110
Query: 132 -PTLNKKLRVLVDFSSPNIAKEMHVGHLSRS 161
PTL K R +VDFSSPNIAKEMHVGHL RS
Sbjct: 111 APTLPVK-RAVVDFSSPNIAKEMHVGHL-RS 139
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 112 bits (283), Expect = 5e-29
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 26/155 (16%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M +++ L++ A++ + + GD+ N AM L K K
Sbjct: 3 MDIKELLAEALAAALEAGGLPELPAVLIERPKDPE----HGDYATNVAMQLAKKLK---- 54
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 128
KNP +IA+ I + I+K+E+A PGF+N FL E + I+ G
Sbjct: 55 -KNPREIAEEIV--------------EAIEKVEIAGPGFINFFLDPAALAELVLAILEAG 99
Query: 129 VQ--PPTLNKKLRVLVDFSSPNIAKEMHVGHLSRS 161
+ + K +V+V++ S N +HVGHL RS
Sbjct: 100 ERYGRSDIGKGKKVVVEYVSANPTGPLHVGHL-RS 133
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 105 bits (263), Expect = 3e-26
Identities = 61/240 (25%), Positives = 97/240 (40%), Gaps = 59/240 (24%)
Query: 9 MSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGE 68
M+++ L + A+ A ++ + V + + GDF N A L K
Sbjct: 1 MNIKQLLKEKIAEALSAAGLDVEEIEILVEPPKDP---EHGDFATNIAFQLAKK-----L 52
Query: 69 KKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNG 128
KNP +IA+ IA +L T+ +I+K+E+A PGF+N FLS + E + +I+ G
Sbjct: 53 GKNPREIAEEIAE----KLDTDE----IIEKVEIAGPGFINFFLSPEFLAELLLEILEKG 104
Query: 129 VQ---PPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHG-------------------- 165
L K +V++++SS N +H+GHL R+ G
Sbjct: 105 DDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHL-RNAIIGDSLARILEFLGYDVTRENYV 163
Query: 166 --WGK--------LEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEKEEEEKK 206
WG E+ E E + E EE+ +EEE EE +K
Sbjct: 164 NDWGTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEK 223
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 73.5 bits (181), Expect = 3e-15
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 22/117 (18%)
Query: 47 KFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPG 106
+FGD+ N A L K+ K KNP IA+ E+ ++I+K+E A P
Sbjct: 33 EFGDYASNIAFPLAKVLK-----KNPRAIAE--------EIVLKLKTGEIIEKVEAAGP- 78
Query: 107 FVNVFLSRVYAGEQIKDIIVN-----GVQPPTLNKKLRVLVDFSSPNIAKEMHVGHL 158
F+N FLS E++ I+ G + K +++++FSS N A +H+GHL
Sbjct: 79 FINFFLSPQKLLERLIQKILTQKEDYGSKKL---KNKKIIIEFSSANPAGPLHIGHL 132
>gnl|CDD|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
domain. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain 1
(Add-1). It is about 140 residues long and it has been
suggested that this domain will be involved in tRNA
recognition.
Length = 84
Score = 67.3 bits (165), Expect = 5e-15
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 13 DYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNP 72
D L A+ A +L + + + +FGD+ N AM L K K KNP
Sbjct: 1 DLLKKAIAEALAKAGLDLEVIDPVIETPKDP---EFGDYATNVAMKLAKKLK-----KNP 52
Query: 73 FDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 112
+IA+ IA +L + I+K+EVA PGF+N FL
Sbjct: 53 REIAEEIAE----KLPKSDL----IEKVEVAGPGFINFFL 84
>gnl|CDD|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal
dom. This domain is found at the amino terminus of
Arginyl tRNA synthetase, also called additional domain 1
(Add-1). It is about 140 residues long and it has been
suggested that this domain will be involved in tRNA
recognition.
Length = 85
Score = 62.2 bits (152), Expect = 3e-13
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 13 DYLSDVFTHAVQVAFPELGDKT-ASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKN 71
D L + A++ A G+ ++ + GD+ N A L K K KN
Sbjct: 1 DLLKEAIAEALKKALGVEGEPIDIALERPKDP---DHGDYATNVAFRLAKKLK-----KN 52
Query: 72 PFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFL 112
P ++A+ IA + + +++K+E+A PGF+N FL
Sbjct: 53 PRELAEEIAEKL--------PKSDLVEKVEIAGPGFINFFL 85
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 63.5 bits (154), Expect = 7e-12
Identities = 32/44 (72%), Positives = 34/44 (77%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEEEEEEEEEEEEEEEEEEEEEEEEE EE E + R+K I
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQAI 907
Score = 60.8 bits (147), Expect = 6e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
G EEEEEEEEEEEEEEEEEEEEEEEEEE EE
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 59.2 bits (143), Expect = 2e-10
Identities = 27/31 (87%), Positives = 29/31 (93%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEEEEEEEEEEEEEEEEEEEEEEE+E EE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 58.5 bits (141), Expect = 4e-10
Identities = 29/40 (72%), Positives = 32/40 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EEEEEEEEEEEEEEEEEEEEEEEE EE E E ++K+
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 55.8 bits (134), Expect = 3e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ + EEEEEEEEEEEEEEEEEEEEE+EEEE ++
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 53.5 bits (128), Expect = 2e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ + EEEEEEEEEEEEEEEEEEEE+EEEE+ ++
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 52.3 bits (125), Expect = 4e-08
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++ + + EEEEEEEEEEEEEEEEEEE+EEEE++ +
Sbjct: 852 VDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 48.1 bits (114), Expect = 1e-06
Identities = 22/50 (44%), Positives = 34/50 (68%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G K +E+ + + + EEEEEEEEEEEEEE+EEEE++++ +N+
Sbjct: 842 QGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 34.2 bits (78), Expect = 0.048
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 135 NKKLRVLV--DFSSPNIAKEMHVGHLSRSLC----HGWGKLEEEEEEEEEEEEEEEEEEE 188
NK++ + V S +AK M +G LS+ H + EE E E E E EE
Sbjct: 605 NKQIELWVKEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESG 664
Query: 189 EEEEEEEEEEEKEEEEKK 206
E E+E E E K E E +
Sbjct: 665 GEAEQEGETETKGENESE 682
Score = 33.8 bits (77), Expect = 0.060
Identities = 22/61 (36%), Positives = 29/61 (47%)
Query: 154 HVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
H G G+ E E E+E E E EE EE E+E E E E K E E + R++ +
Sbjct: 706 HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE 765
Query: 214 I 214
Sbjct: 766 H 766
Score = 32.3 bits (73), Expect = 0.23
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E + E +++E+ + + + EEEEEE+EEEE++++
Sbjct: 840 ENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEE 878
Score = 31.9 bits (72), Expect = 0.23
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 137 KLRVLVDFSSPNIAKEMHVGHLS----RSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEE 192
K+ L D S ++A+ H G + G+ EE E E+E E E + E E E
Sbjct: 623 KVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESE 682
Query: 193 EEEEEEEKEEEE 204
E E K E+E
Sbjct: 683 GEIPAERKGEQE 694
Score = 31.9 bits (72), Expect = 0.29
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K E E E E E + E+E E E E +E + + E E ++ +
Sbjct: 675 TKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Score = 31.1 bits (70), Expect = 0.50
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E E + E E E E E + E+E E E E +E K
Sbjct: 670 EGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707
Score = 30.7 bits (69), Expect = 0.58
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E+E E E + E E E E E + E+E E E E K+
Sbjct: 668 EQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Score = 30.7 bits (69), Expect = 0.68
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
G G++E +E + + E E EE E E E E E E+E E E ++
Sbjct: 695 GEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE 737
Score = 30.7 bits (69), Expect = 0.69
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 150 AKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
AKE + + E E E+E E E EE EE E+E E E E + E + +
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGD 760
Query: 210 RK 211
RK
Sbjct: 761 RK 762
Score = 30.0 bits (67), Expect = 0.99
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
G + E E E + E E E E E + E+E E E + +E K
Sbjct: 665 GEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707
Score = 30.0 bits (67), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E+E E E + E E E E E + E++ E E + K +K
Sbjct: 664 GGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707
Score = 30.0 bits (67), Expect = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G++ E + E+E E E E +E + + E E EE + E E
Sbjct: 683 GEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE 720
Score = 29.2 bits (65), Expect = 1.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E E E E E + E+E E E E +E + K E E ++
Sbjct: 678 ENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Score = 28.8 bits (64), Expect = 2.4
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
G +L E + E +++E+ + + + EEEE+EEEE++++
Sbjct: 833 GEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEE 876
Score = 28.8 bits (64), Expect = 2.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G++E EE EE E+E E E E + E E E + ++ E E
Sbjct: 730 GEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Score = 28.8 bits (64), Expect = 2.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E+E E E E +E + + E E EE E E E E E
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
Score = 28.8 bits (64), Expect = 2.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EE E+E E E E + E E E + +E E E + E E K+ + +I
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEI 783
Score = 28.8 bits (64), Expect = 2.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + E+E E E E +E + + E E EE E E + E E
Sbjct: 687 AERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
Score = 28.4 bits (63), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G + EE EE E+E E E E + E E E + +E + E E
Sbjct: 730 GEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGE 769
Score = 27.7 bits (61), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE E E+E E E + E E E E E++ E++
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQE 694
Score = 27.3 bits (60), Expect = 8.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E E E E +E + + E E EE E E E E E E
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTE 727
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 55.2 bits (133), Expect = 4e-09
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 120 QIKDIIVNGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHL 158
+ I+ G L + +V+V+FSSPN AK +HVGHL
Sbjct: 1 IVTKILAQGGLGSALLENKKVVVEFSSPNPAKPIHVGHL 39
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 51.3 bits (123), Expect = 9e-08
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEEEEE+EE++EEEE+ ++EEE +EE+E+EEKKKK +K K
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVK 78
Score = 50.5 bits (121), Expect = 2e-07
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEEEEE+EE++EEEE+ ++EEE +EEEEKEE++KK K+ K
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 48.6 bits (116), Expect = 7e-07
Identities = 23/45 (51%), Positives = 37/45 (82%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEEEEE+EE++EEEE+ ++EEE +EEEE++E+++K KK ++
Sbjct: 38 EEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Score = 47.8 bits (114), Expect = 1e-06
Identities = 24/42 (57%), Positives = 36/42 (85%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E +EEEEEE+EE++EEEE+ ++EEE +E+EE+E+KKK+ K
Sbjct: 34 EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTK 75
Score = 35.5 bits (82), Expect = 0.014
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E++EEEE+ ++EEE +EEEE+EE++++ +K +E + NK
Sbjct: 46 EKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKT 90
Score = 32.8 bits (75), Expect = 0.11
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
L +E+EE EEE+EE E E E EE+ E+ K EE
Sbjct: 493 LSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 32.8 bits (75), Expect = 0.13
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 32.0 bits (73), Expect = 0.23
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
++E+EE EEE+EE E E E EE+ E+ + +E
Sbjct: 494 SIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 31.3 bits (71), Expect = 0.36
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 154 HVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+ R + G E+EE EEE+EE E E E EE+ E+ + E
Sbjct: 481 FASRIYRMIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKME 526
Score = 28.2 bits (63), Expect = 4.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ ++EEE +EEEE+EE++++ ++ +E E E K K
Sbjct: 51 EEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 27.8 bits (62), Expect = 4.4
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+E+EE EEE+EE E E E EE E+ K
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
Score = 27.4 bits (61), Expect = 5.9
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ ++EEE +EEEE+EE++++ ++ +E + E K K
Sbjct: 53 KTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 27.0 bits (60), Expect = 8.1
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+E+EE EEE+EE E E E E++ E+ K
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSK 524
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 50.4 bits (121), Expect = 2e-07
Identities = 24/34 (70%), Positives = 24/34 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E EEEEEEEEE EEEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 49.6 bits (119), Expect = 3e-07
Identities = 24/34 (70%), Positives = 24/34 (70%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEEEEEEEE EEEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 46.2 bits (110), Expect = 5e-06
Identities = 23/30 (76%), Positives = 23/30 (76%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
EEEEEEEEE EEEEEEEEEEE EEE
Sbjct: 304 EPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.7 bits (88), Expect = 0.003
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E EEEEEEEEE EE+EEEE++++R
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 31.5 bits (72), Expect = 0.28
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEE 189
+ E EEEEEEEEEEE EEE
Sbjct: 311 EEEEVPEEEEEEEEEEERTFEEE 333
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed.
Length = 562
Score = 49.0 bits (117), Expect = 6e-07
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 66 KGEKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVFLSR-VYAGEQIKDI 124
K KK P IA+ +A ++ T K+E P +VNVF +R + +K I
Sbjct: 48 KQYKKAPAIIAKEVAEKLSDPFFT---------KVEAVGP-YVNVFFNRETVSDAVLKTI 97
Query: 125 IV--NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHL 158
+ + V++D+SSPNIAK +GHL
Sbjct: 98 LAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHL 133
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 46.9 bits (112), Expect = 6e-07
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE+E +++EE+EEEE++EE+++E+E EEEE K+ K
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 45.0 bits (107), Expect = 3e-06
Identities = 18/38 (47%), Positives = 31/38 (81%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE+E +++EE+EEEE++EE+++E+E +EEE KK +
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 43.9 bits (104), Expect = 7e-06
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE+E +++EE+EEEE++EE+++E+E EE+E KK K
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 43.5 bits (103), Expect = 1e-05
Identities = 18/38 (47%), Positives = 31/38 (81%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE+E +++EE+EEEE++EE+++E+E E+EE KK +
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 43.5 bits (103), Expect = 1e-05
Identities = 18/38 (47%), Positives = 31/38 (81%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EE+E +++EE+EEEE++EE+++E+E EEEE ++ K
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 42.3 bits (100), Expect = 2e-05
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
H E+E +++EE+EEEE++EE+++E+E EEEE ++ K
Sbjct: 105 HLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 48.1 bits (115), Expect = 1e-06
Identities = 24/40 (60%), Positives = 36/40 (90%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
LEEEEE+ + +EEE+EE+E+ ++E++EEEE+EE+EKKKK
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKK 381
Score = 46.1 bits (110), Expect = 5e-06
Identities = 22/44 (50%), Positives = 38/44 (86%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EEEEE+ + +EEE+EE+E+ ++E++EE+EEEEK+KK++K+
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384
Score = 46.1 bits (110), Expect = 5e-06
Identities = 22/42 (52%), Positives = 36/42 (85%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEEE+ + +EEE+EE+E+ ++E++EEEEE+E+E+KKKK +
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAE 385
Score = 46.1 bits (110), Expect = 6e-06
Identities = 21/44 (47%), Positives = 37/44 (84%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEEE+ + +EEE+EE+E+ ++E++EEE+EEE++KKK++ +
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAE 385
Score = 45.8 bits (109), Expect = 7e-06
Identities = 20/42 (47%), Positives = 34/42 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEE+ + +EEE+EE+E+ ++E++EEEEEE++E++KKK
Sbjct: 345 EEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAES 386
Score = 44.6 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 38/44 (86%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++ EEEEE+ + +EEE+EE+E+ ++E+++EEEE++K+++K K
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKK 382
Score = 44.6 bits (106), Expect = 2e-05
Identities = 20/44 (45%), Positives = 37/44 (84%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ EEEEE+ + +EEE+EE+E+ ++E++E+EEEE+K+K++K
Sbjct: 340 DDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS 383
Score = 44.2 bits (105), Expect = 2e-05
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+ + +EEE+EE+E+ ++E++EEEEEEEKE+++KK
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRS 389
Score = 43.8 bits (104), Expect = 3e-05
Identities = 19/44 (43%), Positives = 36/44 (81%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++++ EEEEE+ + +EEE+EE+E+ ++E+ EEEE+++K +K K
Sbjct: 338 DDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKK 381
Score = 42.3 bits (100), Expect = 1e-04
Identities = 16/45 (35%), Positives = 37/45 (82%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ + +EEE+EE+E+ ++E++EEEEEEE++++++K + ++++
Sbjct: 347 EDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 40.4 bits (95), Expect = 4e-04
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE+EEEEE+ ++E+EE+++++ EEEEE+ + ++
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDE 354
Score = 40.0 bits (94), Expect = 5e-04
Identities = 16/37 (43%), Positives = 30/37 (81%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+EEEEE+ ++E+EE+++++ EEEEE+ + +EE+
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEE 356
Score = 40.0 bits (94), Expect = 6e-04
Identities = 17/45 (37%), Positives = 33/45 (73%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ + +EEE+EE+E+ ++E++EEEEEEE+EK++++ + R
Sbjct: 348 DVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELP 392
Score = 39.6 bits (93), Expect = 8e-04
Identities = 18/40 (45%), Positives = 32/40 (80%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G G+ +EEEEE+ ++E+EE+++++ EEEEE+ + +EEE
Sbjct: 317 GQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEE 356
Score = 39.2 bits (92), Expect = 0.001
Identities = 16/35 (45%), Positives = 28/35 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEE+ ++E+EE+++++ EEEEE+ + EEE+
Sbjct: 323 EEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Score = 38.8 bits (91), Expect = 0.001
Identities = 14/35 (40%), Positives = 29/35 (82%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE+ ++E+EE+++++ EEEEE+ + +EE++EE+
Sbjct: 326 EEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEED 360
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/35 (42%), Positives = 29/35 (82%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEE+ ++E+EE+++++ EEEEE+ + ++EE+E
Sbjct: 324 EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDE 358
Score = 38.4 bits (90), Expect = 0.002
Identities = 13/40 (32%), Positives = 29/40 (72%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ ++E+EE+++++ EEEEE+ + +EEE+E++E+
Sbjct: 324 EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDS 363
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 33/43 (76%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++ +EEE+EE+E+ ++E++EEEEEEE+E++K++ + +
Sbjct: 349 VDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 36.9 bits (86), Expect = 0.005
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+EEE+EE+E+ ++E++EEEEEEE+E+++++ E + +
Sbjct: 347 EDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 31.9 bits (73), Expect = 0.25
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ + EE+EEEEE+ ++E+EE++++ EEE
Sbjct: 310 DDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEE 345
Score = 31.9 bits (73), Expect = 0.28
Identities = 8/41 (19%), Positives = 25/41 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
++ ++++ + ++ E++EE+E+E+ E+KK ++
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKK 176
Score = 31.1 bits (71), Expect = 0.38
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 168 KLEEEEEEEEEEEEEEEEEE------EEEEEEEEEEEEKEEEE 204
K EEE +EE E ++ E E EEE++EEEE+ KE +
Sbjct: 258 KTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESAD 300
Score = 31.1 bits (71), Expect = 0.47
Identities = 12/59 (20%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 154 HVGH-LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
H+G LS + +++ ++++ + ++ E++EE++EE+ ++KK +K
Sbjct: 118 HLGQSLSEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKK 176
Score = 31.1 bits (71), Expect = 0.50
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L++E E ++++ + EE+EEEEE+ ++++EE+
Sbjct: 302 LDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEED 337
Score = 30.4 bits (69), Expect = 0.74
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++++ + EE+EEEEE+ ++E+EE++ ++ E
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 30.4 bits (69), Expect = 0.75
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E ++++ + EE+EEEEE+ ++E+EE ++++ +
Sbjct: 307 EPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 30.0 bits (68), Expect = 0.97
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++++ + EE+EEEEE+ ++E+EE+ +++ +
Sbjct: 305 EFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 28.4 bits (64), Expect = 3.2
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 168 KLEEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
KLE E EEE++EEEE+ +E ++ ++E E + ++
Sbjct: 273 KLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDN 313
Score = 28.4 bits (64), Expect = 3.5
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K ++ ++E E ++++ + EE+EEEEE +++
Sbjct: 295 SKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDE 333
Score = 27.3 bits (61), Expect = 7.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 175 EEEEEEEEEEEEEEEEEE-----EEEEEEEKEEEEKK 206
EEE +EE E ++ E E EEE+++EEE+ K
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSK 296
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 46.5 bits (111), Expect = 1e-06
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L+++E+EEEEEEE E EE +EEE+ +E E++ + K++KRR+N+
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENER 141
Score = 46.1 bits (110), Expect = 1e-06
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 157 HLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ + L + EEEEEEE E EE +EEE+ +E E+E + K E+ ++ +R++ +I
Sbjct: 89 KVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 41.9 bits (99), Expect = 4e-05
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EEEE E EE +EEE+ +E E+E + + EK E ++K++ K
Sbjct: 103 EEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 41.5 bits (98), Expect = 5e-05
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EE E EE +EEE+ +E E+E + + E+ +E E K+K+ K +
Sbjct: 104 EEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 33.4 bits (77), Expect = 0.040
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
++EE +EEE+ +E E+E + + E+ E E K++E K++ +
Sbjct: 110 EVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKML 154
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. There
are at least three subgroups of ArgRS. One type contains
both characteristic class I HIGH and KMSKS motifs, which
are involved in ATP binding. The second subtype lacks
the KMSKS motif; however, it has a lysine N-terminal to
the HIGH motif, which serves as the functional
counterpart to the second lysine of the KMSKS motif. A
third group, which is found primarily in archaea and a
few bacteria, lacks both the KMSKS motif and the HIGH
loop lysine.
Length = 212
Score = 47.2 bits (113), Expect = 1e-06
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 139 RVLVDFSSPNIAKEMHVGHL 158
++LV+F S N +HVGHL
Sbjct: 1 KILVEFVSANPTGPLHVGHL 20
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 46.5 bits (111), Expect = 3e-06
Identities = 28/43 (65%), Positives = 37/43 (86%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+++EEEEEEE+E++EEE+EEEEEE EEEKEEEE+KKK+
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 44.5 bits (106), Expect = 2e-05
Identities = 22/46 (47%), Positives = 37/46 (80%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +++ +++EEEEEEE+E++EEE+EEEEE+ EEEK+++ K K
Sbjct: 429 EKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Score = 44.5 bits (106), Expect = 2e-05
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +++EEEEEEE+E++EEE+EEEEEE E+E+EE+++K++K
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 43.8 bits (104), Expect = 3e-05
Identities = 21/47 (44%), Positives = 37/47 (78%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K ++++ +++EEEEEEE+E++EEE+EEEE+E EE+K++ + K
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 43.4 bits (103), Expect = 3e-05
Identities = 19/48 (39%), Positives = 37/48 (77%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K E++ EEE++E++++ +++EEEEEEE+EK+EEEK+++ + +
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 43.4 bits (103), Expect = 4e-05
Identities = 18/46 (39%), Positives = 37/46 (80%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EEE++E++++ +++EEEEEEE+E++E+E+EE++++ + K
Sbjct: 421 KKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 43.4 bits (103), Expect = 4e-05
Identities = 17/46 (36%), Positives = 38/46 (82%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E++E++++ +++EEEEEEE+E++EEE++EEEE+ ++ ++ +
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEE 469
Score = 42.6 bits (101), Expect = 6e-05
Identities = 16/41 (39%), Positives = 33/41 (80%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E++ EEE++E++++ +++EEEEEEEKE++E++K+
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 42.2 bits (100), Expect = 8e-05
Identities = 21/47 (44%), Positives = 37/47 (78%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E++++ +++EEEEEEE+E++EEE+EEE+EE E++K+ + K
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 41.8 bits (99), Expect = 1e-04
Identities = 15/44 (34%), Positives = 35/44 (79%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
K+ E+ E++ EEE++E++++ +++EEEEE+E+E+K++++
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 41.4 bits (98), Expect = 2e-04
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ E++ EEE++E++++ +++EEE+EEE++KK+ K +
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 41.4 bits (98), Expect = 2e-04
Identities = 17/46 (36%), Positives = 38/46 (82%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ ++E++++ +++EEEEEEE+E++EEE+E+EEEE ++++ + +
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Score = 41.4 bits (98), Expect = 2e-04
Identities = 16/46 (34%), Positives = 35/46 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K+++ E+ E++ EEE++E++++ +++EE+EEEEK+KK + +
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/46 (34%), Positives = 35/46 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E+ E++ EEE++E++++ +++EEEE+EE+EKK++ ++ +
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 38.4 bits (90), Expect = 0.002
Identities = 15/46 (32%), Positives = 34/46 (73%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K ++ E+ E++ EEE++E++++ +++E+EEEE+K+K+ + K
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 36.1 bits (84), Expect = 0.010
Identities = 12/47 (25%), Positives = 33/47 (70%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K ++ ++ E+ E++ EEE++E++++ +K+EEE+++++ K +
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 32.6 bits (75), Expect = 0.12
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 169 LEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L EEE E ++ ++ E+ E++ EEE++E+++K KKK+ + +
Sbjct: 394 LTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 44.4 bits (105), Expect = 6e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++EEEE EEE +E E+E+ E + E +E+K+ E K K K K
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138
Score = 39.7 bits (93), Expect = 2e-04
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE EEE +E E+E+ E + E +E++++E + K ++ K K
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPK 140
Score = 39.0 bits (91), Expect = 5e-04
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 156 GHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
G L R+L W K+ E ++EEEE EEE +E E+E+ E K E ++KKKR K
Sbjct: 75 GPLVRNLPAMW-KIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKP 132
Score = 39.0 bits (91), Expect = 5e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++EEEE EEE +E E+E+ E + + +E+KK++ K K
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKT 134
Score = 37.4 bits (87), Expect = 0.002
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEE +E E+E+ E + E +E+++ E + + E++K K K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 36.7 bits (85), Expect = 0.003
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEE-----EEEEKEEEEKKKKR 209
EE +E E+E+ E + E +E+++ E E+EK + E KK +
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 35.5 bits (82), Expect = 0.007
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EEE +E E+E+ E + E +E+++ E + + +K+K +
Sbjct: 100 ETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Score = 30.1 bits (68), Expect = 0.45
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E+E+ E + E +E+++ E + + E+E+ K E +K K
Sbjct: 110 EQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 45.4 bits (108), Expect = 8e-06
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
G+ E+++EEEE+E+EEEEEEEEE EE E EE
Sbjct: 337 GRCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 45.4 bits (108), Expect = 9e-06
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
E+++EEEE+E+EEEEEEEEE EE E EE
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 45.1 bits (107), Expect = 1e-05
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
W E+++EEEE+E+EEEEEEEEE EE E EE
Sbjct: 341 WVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 44.3 bits (105), Expect = 2e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E+++EEEE+E+EEEEEEEEE EE E E+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 43.1 bits (102), Expect = 4e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+++EEEE+E+EEEEEEEEE EE + EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 42.7 bits (101), Expect = 6e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
+ +EEEE+E+EEEEEEEEE EE E EE
Sbjct: 346 QKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 42.7 bits (101), Expect = 7e-05
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+++EEEE+E+EEEEEEEEE EE E +E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+++EEEE+E+EEEEEEEEE E+ E E+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 38.9 bits (91), Expect = 0.001
Identities = 25/36 (69%), Positives = 27/36 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EEEEEEEE E +EE+E EEEEEEE EE KEEE
Sbjct: 171 EEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGT 206
Score = 35.8 bits (83), Expect = 0.011
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EEEEEEEEEEE E +E EE + E E +E +
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADS 322
Score = 35.8 bits (83), Expect = 0.013
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
G +LEEEEEEEEEEE E +E EE + E E
Sbjct: 283 GLYQLEEEEEEEEEEEPAERDELEENPDFEGLE 315
Score = 30.8 bits (70), Expect = 0.56
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E E EEEEEEEE E +EE E EE++++
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEE 194
Score = 28.9 bits (65), Expect = 2.0
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E E EEEEEEEE E +E++E E++++ ++
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 45.7 bits (108), Expect = 8e-06
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE EEEEEEEEEEEEEE+E EEEE E+E+EEEE
Sbjct: 441 EEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEE 475
Score = 45.3 bits (107), Expect = 1e-05
Identities = 27/35 (77%), Positives = 30/35 (85%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEEEEEEEEEEEEE+E EEEE E+EEE+EE E
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 45.3 bits (107), Expect = 1e-05
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EEEE EEEEEEEEEEEEEE+E EEEE ++EEE+++ N
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482
Score = 44.9 bits (106), Expect = 1e-05
Identities = 27/38 (71%), Positives = 31/38 (81%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE EEEEEEEEEEEEEE+E EEEE E+EE+EEE
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 44.5 bits (105), Expect = 2e-05
Identities = 27/37 (72%), Positives = 30/37 (81%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E EEEE EEEEEEEEEEEEEE+E EEEE E+EE
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEE 471
Score = 43.7 bits (103), Expect = 3e-05
Identities = 27/43 (62%), Positives = 31/43 (72%)
Query: 163 CHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+EEEEEEEEEEEEEE+E EEEE E+EEEEEE E +
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNG 481
Score = 43.7 bits (103), Expect = 3e-05
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEEEEEEE+E EEEE E+EEEEEE E + EE
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEE 484
Score = 43.4 bits (102), Expect = 4e-05
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEEEEEE+E EEEE E+EEEEEE E + EEE
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485
Score = 43.0 bits (101), Expect = 6e-05
Identities = 25/35 (71%), Positives = 27/35 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEEEEEEEE+E EEEE E+EEEEEE E E
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483
Score = 43.0 bits (101), Expect = 6e-05
Identities = 24/36 (66%), Positives = 28/36 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EEEEEEEE+E EEEE E+EEEEEE E + EEE +
Sbjct: 452 EEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 38.0 bits (88), Expect = 0.003
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
EEEE+E EEEE E+EEEEEE E + EEE E
Sbjct: 455 EEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 37.6 bits (87), Expect = 0.004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE+E EEEE E+EEEEEE E + EEE + E
Sbjct: 457 EEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 37.2 bits (86), Expect = 0.005
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ EE+E EEEE E+EEEEEE E + EEE E E
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 34.5 bits (79), Expect = 0.035
Identities = 23/48 (47%), Positives = 27/48 (56%)
Query: 159 SRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
SRS E +E EEEE EEEEEEEEEEE+EE+E +
Sbjct: 416 SRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESE 463
Score = 34.5 bits (79), Expect = 0.037
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEE--------EEEKEEEEKKK 207
+ EEEE E+EEEEEE E + EEE E EE +E+ E++
Sbjct: 460 QESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRN 507
Score = 33.7 bits (77), Expect = 0.061
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE E+EEEEEE E + EEE E E + EE ++ R+N
Sbjct: 465 EEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRN 507
Score = 33.3 bits (76), Expect = 0.089
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+E EEEE EEEEEEEEEE+EEE++ +
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESE 463
Score = 32.6 bits (74), Expect = 0.16
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EEEEEE E + EEE E E + + EE EE+ +++ I
Sbjct: 469 DEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGI 513
Score = 31.0 bits (70), Expect = 0.53
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E EEEE EEEEEEEEE+EEEE++ +
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESE 463
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 45.5 bits (108), Expect = 8e-06
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE+EEEEEEE+E+E +E ++EE EE + E K + N
Sbjct: 388 RDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNS 434
Score = 41.3 bits (97), Expect = 2e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++EEEE+EEEEEEE+E+E +E + EE E+ K +
Sbjct: 385 NTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYE 428
Score = 40.5 bits (95), Expect = 4e-04
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
LE E+ E ++EEEE+EEEEEEE+E+E KE +
Sbjct: 379 LEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDD 415
Score = 40.1 bits (94), Expect = 5e-04
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ E ++EEEE+EEEEEEE+E+E +E ++EE ++
Sbjct: 383 DANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDV 423
Score = 39.7 bits (93), Expect = 8e-04
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 166 WGKLEEEE----------EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
W K +E E E E+ E ++EEEE+EEEEEEE+E E K
Sbjct: 361 WTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSK 410
Score = 28.9 bits (65), Expect = 2.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
++ EE E E +EEE+ E++E + + +E+E
Sbjct: 63 RVYEEGEAELDEEEDGEDDELSVDSGQSKEDEW 95
Score = 28.2 bits (63), Expect = 3.7
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE E E +EEE+ E++E + + +E+E
Sbjct: 65 YEEGEAELDEEEDGEDDELSVDSGQSKEDEW 95
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 45.1 bits (107), Expect = 1e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+E+EEEE+ +E EEEE E+ EEE + E+ +
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGS 414
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +E EEEE E+ EEE + E+ E + + K K
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKES 424
Score = 36.6 bits (85), Expect = 0.007
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E EEEE E+ EEE + E+ E + + E K K
Sbjct: 384 EHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 35.9 bits (83), Expect = 0.012
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E EEEE E+ EEE + E+ E + + E K +
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 34.3 bits (79), Expect = 0.037
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE E+ EEE + E+ E + E + K+ +
Sbjct: 385 HEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDS 428
Score = 32.4 bits (74), Expect = 0.17
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ E E+ EEE + E+ E + + E K ++E
Sbjct: 387 EEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 31.6 bits (72), Expect = 0.30
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EEE E+ EEE + E+ E + + + + +K+
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 27.8 bits (62), Expect = 4.3
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE + E+ E + + E + ++E + +
Sbjct: 395 EEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 44.2 bits (105), Expect = 2e-05
Identities = 12/46 (26%), Positives = 34/46 (73%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
LEE+++++EE +EE+EE + E++E++++++ +++ ++R +
Sbjct: 122 DLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLER 167
Score = 42.3 bits (100), Expect = 1e-04
Identities = 11/42 (26%), Positives = 32/42 (76%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE +EE+EE + E++E++++++++++ +E ++++RR+
Sbjct: 131 EESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRR 172
Score = 40.7 bits (96), Expect = 3e-04
Identities = 11/46 (23%), Positives = 32/46 (69%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++EE +EE+EE + E++E++++++++++ E ++RR+ +
Sbjct: 128 DDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRRE 173
Score = 39.2 bits (92), Expect = 0.001
Identities = 9/44 (20%), Positives = 33/44 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+++++EE +EE+EE + E++E+++++++ ++ +++ + +
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERR 168
Score = 37.7 bits (88), Expect = 0.003
Identities = 11/45 (24%), Positives = 31/45 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EE+++++EE +EE+EE + E++E+++ ++++ R+ +
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSL 165
Score = 37.3 bits (87), Expect = 0.004
Identities = 9/44 (20%), Positives = 30/44 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE+EE + E++E++++++++++ E+ E ++++R +
Sbjct: 133 SDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEE 176
Score = 36.5 bits (85), Expect = 0.008
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ + EEE ++E ++ + EE+++++EE ++E+EE K
Sbjct: 101 FDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSED 145
Score = 35.3 bits (82), Expect = 0.017
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 5/43 (11%)
Query: 167 GKLEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEEKEEEE 204
G +EEE ++E ++ EE+++++EE +EE+EE K E++
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDD 146
Score = 35.0 bits (81), Expect = 0.027
Identities = 9/44 (20%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE+EE + E++E++++++++++ E E ++++ + K
Sbjct: 134 DEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEK 177
Score = 34.2 bits (79), Expect = 0.040
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++ + EE+++++EE +EE+EE + E++E
Sbjct: 112 DEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDE 147
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 43.9 bits (104), Expect = 2e-05
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
LE+ EEEEEE++ E E+E+EE+E+EEEEE+ +E +K
Sbjct: 283 LEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 41.6 bits (98), Expect = 1e-04
Identities = 19/35 (54%), Positives = 30/35 (85%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
K EEEEEE++ E E+E+EE+E+EEEEE+++E ++
Sbjct: 285 KAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 40.4 bits (95), Expect = 3e-04
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
L E+ EEEEEE++ E E+E+EE+E+EEEEE ++E K
Sbjct: 282 LLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 40.4 bits (95), Expect = 3e-04
Identities = 19/36 (52%), Positives = 30/36 (83%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E+ EEEEEE++ E E+E+EE+E+EEEE++++E K
Sbjct: 284 EKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E+ EEEEEE++ E E+E+EE+E+EEE+E++++ K
Sbjct: 280 EELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 39.3 bits (92), Expect = 7e-04
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 167 GKLEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
G EE+ EE E+ EEEEEE++ E E+E+EE+E++EEEE + K
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 34.3 bits (79), Expect = 0.033
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE+ EE E+ EEEEEE++ E E+E EE+E +++ +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDD 315
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 43.2 bits (102), Expect = 3e-05
Identities = 17/36 (47%), Positives = 32/36 (88%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+LE E+ +EE+E++EEEEEEEEEE+E+ ++++ +++
Sbjct: 162 ELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 43.2 bits (102), Expect = 3e-05
Identities = 19/37 (51%), Positives = 32/37 (86%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
KL+E E E+ +EE+E++EEEEEEEEEE+E+ + ++++
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDD 195
Score = 42.0 bits (99), Expect = 7e-05
Identities = 17/37 (45%), Positives = 30/37 (81%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E E+ +EE+E++EEEEEEEEEE+E+ ++ ++++
Sbjct: 160 LKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 42.0 bits (99), Expect = 7e-05
Identities = 17/37 (45%), Positives = 31/37 (83%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K E E+ +EE+E++EEEEEEEEEE+E+ +++ ++++
Sbjct: 161 KELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 41.7 bits (98), Expect = 1e-04
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
KL E++ +E E E+ +EE+E++EEEEEEEE+E+E+
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDED 188
Score = 41.3 bits (97), Expect = 1e-04
Identities = 18/37 (48%), Positives = 31/37 (83%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LE++ +E E E+ +EE+E++EEEEEEEEEE+++ ++
Sbjct: 155 MLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDD 191
Score = 39.0 bits (91), Expect = 7e-04
Identities = 18/37 (48%), Positives = 29/37 (78%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E++ +E E E+ +EE+E++EEEEEEEEEE E+ +
Sbjct: 154 SMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFD 190
Score = 36.7 bits (85), Expect = 0.004
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
G EEE+ +E+ E++ +E E E+ +EE+E+ EEEE+
Sbjct: 140 GLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Score = 36.3 bits (84), Expect = 0.005
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ E++ +E E E+ +EE+E++EEEEE+EEEE
Sbjct: 149 IDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 33.2 bits (76), Expect = 0.060
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EEEE+ +E+ E++ +E E E+ +EE+EK+EEE++
Sbjct: 144 EEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Score = 33.2 bits (76), Expect = 0.061
Identities = 11/27 (40%), Positives = 23/27 (85%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEE 193
++EEEEEEEEEE+E+ ++++++++
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 31.6 bits (72), Expect = 0.22
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L EEEE+ +E+ E++ +E E E+ +EE E++E
Sbjct: 139 VGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
Score = 30.1 bits (68), Expect = 0.74
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EEEE+ +E+ E++ +E E E+ EE+EK +
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
Score = 29.7 bits (67), Expect = 0.76
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EEEE+ +E+ E++ +E E E+ +EE++K +
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
Score = 29.3 bits (66), Expect = 1.1
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EEEE+ +E+ E++ +E E E+ ++E+E+ +
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDE 176
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 43.5 bits (103), Expect = 3e-05
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 168 KLEEEEEEEEEEEEEEEE-EEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE EEEEEE EE EEE EE+ + + + +E +E+++ RR++++
Sbjct: 146 ELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQV 193
Score = 33.9 bits (78), Expect = 0.054
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ + E E E EEEEEE EE EEE EE+ + + +K+ +
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAE 179
Score = 28.1 bits (63), Expect = 3.8
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ + E E E EEEEEE EE EE+ EE+ + + +
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKR 176
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 43.2 bits (102), Expect = 4e-05
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 153 MHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ G+ E+EE E++ +E+EE+E EE+E E EE+E+EE + K
Sbjct: 19 LTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
Score = 38.2 bits (89), Expect = 0.002
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EE E++ +E+EE+E EE+E E EEEE EE E K
Sbjct: 38 EEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKA 75
Score = 37.4 bits (87), Expect = 0.003
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+EE E++ +E+EE+E EE+E E EEE++EE + K
Sbjct: 37 DEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKA 75
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 42.9 bits (102), Expect = 5e-05
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+ E EE +++E+EEEEE+E + + K+
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKV 220
Score = 42.1 bits (100), Expect = 1e-04
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ EE+ E EE +++E+EEEEE E ++
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADES 214
Score = 41.3 bits (98), Expect = 2e-04
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EE+ E EE +++E+EEE+E+E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 40.5 bits (96), Expect = 4e-04
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EE+ E EE +++E+EEEE++E + ++++
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216
Score = 37.9 bits (89), Expect = 0.003
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ + E EE +++E+EEEEE+E ++ +E E +K
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 37.1 bits (87), Expect = 0.005
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E EE +++E+EEEEE+E ++ E E +K K
Sbjct: 182 PAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEK 223
Score = 32.1 bits (74), Expect = 0.23
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EKEEEE 204
+EE + ++ E E + + +E+ EEE E E
Sbjct: 60 VEEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 30.9 bits (71), Expect = 0.50
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE + ++ E E + + +E+ EEE +
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVES 97
Score = 30.5 bits (70), Expect = 0.57
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE +++E+EEEEE+E ++ +E E ++ EK K K
Sbjct: 188 ELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQY 231
Score = 30.1 bits (69), Expect = 0.79
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E + ++ E E + + +E+ EEE E
Sbjct: 62 EAPDADDLLLAENEADAQTDEDAEEEAAAALSSVES 97
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 43.1 bits (101), Expect = 7e-05
Identities = 16/37 (43%), Positives = 33/37 (89%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+++++E+E+E++++EE++EEEEEEEEE + +E+E+
Sbjct: 153 IDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
Score = 42.0 bits (98), Expect = 2e-04
Identities = 21/49 (42%), Positives = 36/49 (73%), Gaps = 5/49 (10%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEE-----EEEEEEEKEEEEKKKKRRKNK 213
+E+E+E++++EE++EEEEEEEEE +E+EE+E E+ +K +K
Sbjct: 157 DEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
Score = 42.0 bits (98), Expect = 2e-04
Identities = 15/36 (41%), Positives = 33/36 (91%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++++E+E+E++++EE++EEEEEEEEE + ++E+++
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
Score = 40.4 bits (94), Expect = 5e-04
Identities = 15/36 (41%), Positives = 32/36 (88%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++++E+E+E++++EE++EEEEEEEEE + ++E ++
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEE 189
Score = 37.7 bits (87), Expect = 0.004
Identities = 16/42 (38%), Positives = 32/42 (76%), Gaps = 3/42 (7%)
Query: 169 LEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
L EE+ + ++++E+E+E++++EE++EEE+EEEE+ K
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 36.9 bits (85), Expect = 0.007
Identities = 13/39 (33%), Positives = 30/39 (76%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E+ + ++++E+E+E++++EE++EE+EEEE++ K
Sbjct: 143 EDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 36.2 bits (83), Expect = 0.011
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++++EE++EEEEEEEEE + ++E+EE+E E+ +K
Sbjct: 160 EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200
Score = 34.6 bits (79), Expect = 0.041
Identities = 12/41 (29%), Positives = 29/41 (70%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE+ + ++++E+E+E++++EE+ EEEE++++ K
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 29.2 bits (65), Expect = 2.2
Identities = 8/40 (20%), Positives = 27/40 (67%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+ + ++++E+E+E+++ EE++++++ + +I
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 28.9 bits (64), Expect = 2.5
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ +EEEEEEEEE + ++E+EE+E E+ EK E +K
Sbjct: 167 EEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 41.0 bits (97), Expect = 2e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE +E + + EEEEEEEEEEEEEE EEE
Sbjct: 286 EELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 40.6 bits (96), Expect = 3e-04
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L+EE +E + + EEEEEEEEEEEEE+ EE
Sbjct: 282 DALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 39.1 bits (92), Expect = 8e-04
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
L + + EEEEEEEEEEEEEE EEE
Sbjct: 290 EVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 39.1 bits (92), Expect = 8e-04
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E +E + + EEEEEEEEEEEEEE EEE
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 35.2 bits (82), Expect = 0.016
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K +EE +E + + EEEEEEEEEEE+EE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 35.2 bits (82), Expect = 0.018
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ +EE +E + + EEEEEEEEEE+EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 34.5 bits (80), Expect = 0.029
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
L +++ +EE +E + + EEEEEEE+EEEE++
Sbjct: 276 AALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 40.8 bits (96), Expect = 3e-04
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E ++EE + E EE E E EEE +EEE +E +K RRK
Sbjct: 381 RAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRK 424
Score = 33.9 bits (78), Expect = 0.049
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K EE + E EE E E EEE +EEE EE +K +K
Sbjct: 386 KKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFG 426
Score = 31.6 bits (72), Expect = 0.28
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E + EE+E+E+ + EEE+E+++E++ + E R+K
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGK 360
Score = 31.2 bits (71), Expect = 0.41
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K+E + EE+E+E+ + EEE+E+++E++++ + +KK K K
Sbjct: 317 KIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLK 362
Score = 30.0 bits (68), Expect = 1.1
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+L + E + EE+E+E+ + EEE+E+++E+ ++ E RK
Sbjct: 313 ELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRK 356
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ ++E + E +E++E +EEEE E+EEE K E+ K ++++
Sbjct: 434 AESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSE 479
Score = 28.9 bits (65), Expect = 2.2
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ EE+E+E+ + EEE+E+++E++++ E KK + K
Sbjct: 321 KSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKE 363
Score = 28.5 bits (64), Expect = 2.8
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E + E +E++E +EEEE E+EEE + E+ + K+ ++ + +
Sbjct: 438 KLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKE 484
Score = 28.5 bits (64), Expect = 3.2
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ ++E + E +E++E +EEEE E+EEE + ++ K KR +
Sbjct: 438 KLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQ 482
Score = 28.5 bits (64), Expect = 3.3
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E + EE+E+E+ + EEE+E+++E+++ E +++ K+
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKL 361
Score = 28.1 bits (63), Expect = 4.3
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E+E E ++ ++E + E +E++E +EEEE ++EEE K ++ NK
Sbjct: 428 ENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANK 473
Score = 27.7 bits (62), Expect = 5.6
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
GK EE+E+E+ + EEE+E+++E++++ E ++ K
Sbjct: 320 GKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGK 360
Score = 27.3 bits (61), Expect = 6.7
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
K E +E++E +EEEE E+EEE + E+ + K E+ +K+ +
Sbjct: 444 KNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEE 488
Score = 27.3 bits (61), Expect = 7.2
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E ++ ++E + E +E++E +EEEE E+EEE + E+ K K
Sbjct: 432 KEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLK 476
Score = 27.3 bits (61), Expect = 8.2
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ ++ ++E + E +E++E +EEEE E+EEE + E+ K +R K
Sbjct: 434 AESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKA 481
Score = 27.3 bits (61), Expect = 8.3
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E+E E ++ ++E + E +E++E +EEEE E EEE K +K
Sbjct: 428 ENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEK 469
Score = 26.9 bits (60), Expect = 9.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE + E+ + + E+ ++EEEEEE ++E K K
Sbjct: 462 EEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGK 505
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 39.5 bits (92), Expect = 4e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + EE EE+EEE E+ E+ +EE+EE EE EEE
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 39.5 bits (92), Expect = 4e-04
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+EE+EEE E+ E+ +EE+EE EE EEE +
Sbjct: 31 VEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSS 70
Score = 39.5 bits (92), Expect = 4e-04
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
W EE EE+EEE E+ E+ +EE+EE EE EE+ K +K
Sbjct: 24 WDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKS 72
Score = 36.8 bits (85), Expect = 0.003
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE+ + + EE EE+EEE E+ E+ +EE++E EE
Sbjct: 20 EEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEE 54
Score = 33.0 bits (75), Expect = 0.059
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEE---EEEKEEEE 204
++EEE+ + + EE EE+EEE E+ E +EE EE E
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAE 53
Score = 28.3 bits (63), Expect = 2.0
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
KL+ ++EEE+ + + EE EE+EEE E+ E+
Sbjct: 9 KLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWED 43
Score = 26.4 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 169 LEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+E+ E+ +EE+EE EE EEE + K
Sbjct: 38 MEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSS 74
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 39.8 bits (94), Expect = 4e-04
Identities = 23/35 (65%), Positives = 24/35 (68%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
G+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 8e-04
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 8e-04
Identities = 21/34 (61%), Positives = 23/34 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ E EEEEEE EEEEEEEEEEE EE + E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 37.8 bits (89), Expect = 0.002
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E EEEEEE EEEEEEEEEEE E+ E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 37.5 bits (88), Expect = 0.002
Identities = 22/37 (59%), Positives = 25/37 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
LE + E EEEEEE EEEEEEEEEEE +E E +
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.3 bits (85), Expect = 0.006
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ E EEEEEE EEEEEEEEEEE EE E +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.5 bits (83), Expect = 0.010
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ E EEEEEE EEEEEEEEEE+ EE + +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.5 bits (83), Expect = 0.012
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E EEEEEE EEEEEEEEE+E EE + +
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 31.3 bits (72), Expect = 0.32
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ E EEEEEE EEEEEE+EEEE ++
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAE 256
Score = 29.7 bits (68), Expect = 0.80
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ E EEEEEE EEEEE+EEEE+ ++
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 39.6 bits (93), Expect = 4e-04
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++EEE EE E EE E+E EEE EEE E E +EE+ K
Sbjct: 7 QVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 37.3 bits (87), Expect = 0.003
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EEE EE E EE E+E EEE EEE E E +EE+ K
Sbjct: 9 EEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 36.1 bits (84), Expect = 0.006
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ E+ EEE EE E EE E+E EEE EE+ E E
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAE 37
Score = 35.7 bits (83), Expect = 0.007
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EEE EE E EE E+E EEE EEE E + +E++ K
Sbjct: 9 EEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 35.4 bits (82), Expect = 0.009
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+ E+ EEE EE E EE E+E EEE E+E E + + KI
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKI 46
Score = 35.0 bits (81), Expect = 0.012
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E EE E+E EEE EEE E E +EE+ + E + K
Sbjct: 14 ETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
Score = 34.6 bits (80), Expect = 0.021
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E+E EEE EEE E E +EE+ + E E + +E +++
Sbjct: 19 EAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEER 59
Score = 34.2 bits (79), Expect = 0.024
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE E+E EEE EEE E E +EE+ + E E K + +
Sbjct: 16 EVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEER 59
Score = 33.4 bits (77), Expect = 0.047
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE+ E+ EEE EE E EE E+E EEE +EE E
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESE 35
Score = 32.3 bits (74), Expect = 0.12
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+E EEE EEE E E +EE+ + E E K +E +++ R
Sbjct: 22 EDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLR 62
Score = 31.1 bits (71), Expect = 0.25
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE+ E+ EEE EE E EE E+E EE+ EE+
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEE 33
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 40.4 bits (94), Expect = 4e-04
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
LEEEEE E EE+EE E+E + +E+ EEE+EEE K K
Sbjct: 139 VLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMK 179
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 40.2 bits (94), Expect = 4e-04
Identities = 14/47 (29%), Positives = 36/47 (76%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G++++E + EE E + +EE+ ++EE E++++E+ +E+K+K+++ +
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 39.4 bits (92), Expect = 8e-04
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KL E ++E + EE E + +EE+ ++EE E++++E+ + K ++ K
Sbjct: 384 KLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/41 (34%), Positives = 30/41 (73%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE E + +EE+ ++EE E++++E+ +E +E+ +K +R+K
Sbjct: 394 ASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 38.6 bits (90), Expect = 0.001
Identities = 16/46 (34%), Positives = 32/46 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E + EE E + +EE+ ++EE E++++E+ E++EK++K + K
Sbjct: 389 KDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 37.9 bits (88), Expect = 0.003
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KL++ ++ E ++E + EE E + +EE+ ++EE EKK+K + ++
Sbjct: 377 KLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADE 422
Score = 37.1 bits (86), Expect = 0.005
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++ E ++E + EE E + +EE+ ++EE E+++K++
Sbjct: 380 DYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Score = 30.9 bits (70), Expect = 0.42
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L +E ++ ++ ++ E ++E + EE E K +EEK K+ K
Sbjct: 369 ELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEK 414
Score = 30.5 bits (69), Expect = 0.58
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L+E ++ ++ ++ E ++E + EE E + +EE+ K++ + K
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKK 415
Score = 29.4 bits (66), Expect = 1.5
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE----EEKKKKRRKNK 213
E ++ ++ ++ E ++E + EE E + KEE EE +KK+++
Sbjct: 373 EYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQA 420
Score = 27.1 bits (60), Expect = 8.8
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ +E +E ++ ++ ++ E ++E + +E E K K
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAK 403
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 39.5 bits (93), Expect = 5e-04
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E +EE+ E++++++E+E+E+ EEE
Sbjct: 37 AAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 39.1 bits (92), Expect = 7e-04
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E +EE+ E++++++E+E+E+++EE +
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 38.3 bits (90), Expect = 0.001
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E +EE+ E++++++E+E+E +EEE
Sbjct: 36 AAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 37.9 bits (89), Expect = 0.002
Identities = 13/39 (33%), Positives = 30/39 (76%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E +EE+ E++++++E+E+E++EEE + + EE +++
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARER 83
Score = 37.6 bits (88), Expect = 0.002
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E +EE+ E++++++E+E+E++EEE +
Sbjct: 41 AAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 36.8 bits (86), Expect = 0.003
Identities = 13/40 (32%), Positives = 30/40 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E E +EE+ E++++++E+E+E++EEE + + E+ ++R
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEARER 83
Score = 32.5 bits (75), Expect = 0.095
Identities = 11/31 (35%), Positives = 25/31 (80%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
L+EE+ E++++++E+E+E++EEE + + E
Sbjct: 48 LDEEDLEDDDDDDEDEDEDDEEEADLGPDPE 78
Score = 29.1 bits (66), Expect = 1.2
Identities = 10/28 (35%), Positives = 22/28 (78%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
LE++++++E+E+E++EEE + + EE
Sbjct: 52 DLEDDDDDDEDEDEDDEEEADLGPDPEE 79
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 39.5 bits (93), Expect = 6e-04
Identities = 16/46 (34%), Positives = 33/46 (71%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E +EE +E++EE+++EE E + + EE+++ EEK++K++ K
Sbjct: 277 EEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 37.2 bits (87), Expect = 0.004
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L+ EEE +EE +E++EE+++EE E + + EE++K + ++ K
Sbjct: 273 LKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Score = 36.8 bits (86), Expect = 0.005
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEEE+ + EEE +EE +E+KEE++K+++ K
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLA 301
Score = 36.5 bits (85), Expect = 0.007
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
K+++ EEEEE+ + EEE +EE +E++EE+K+EE + K +
Sbjct: 260 KVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 34.9 bits (81), Expect = 0.019
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEEEE+ + EEE +EE +E++EEK++EE++ K K
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 33.4 bits (77), Expect = 0.065
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEEEE+ + EEE +EE ++++EEKKK+ R+ K+
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKL 300
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 39.9 bits (93), Expect = 6e-04
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E + E E++E+ EE EEE+ EEE +K ++ KK K +KN +
Sbjct: 307 EIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGL 351
Score = 38.0 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ ++ E + E E++E+ EE EEE+ EEE +K KK +K K
Sbjct: 299 EREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345
Score = 36.9 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + E E++E+ EE EEE+ EEE ++ KK K+ K K
Sbjct: 302 DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGK 347
Score = 35.3 bits (81), Expect = 0.019
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E E++E+ EE EEE+ EEE ++ K+ ++ K K+
Sbjct: 309 PAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLD 352
Score = 35.3 bits (81), Expect = 0.020
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E E++E+ EE EEE+ EEE ++ +K ++ K KK +K
Sbjct: 310 AKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDK 353
Score = 33.0 bits (75), Expect = 0.10
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K E E++E+ EE EEE+ EEE ++ ++ +K + +K +
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 32.6 bits (74), Expect = 0.13
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ EE E++ E + E E++E+ +E EE+K
Sbjct: 291 SASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKN 328
Score = 32.2 bits (73), Expect = 0.21
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EE E++ E + E E++E+ E+ EEEK ++
Sbjct: 292 ASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEE 330
Score = 31.9 bits (72), Expect = 0.26
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E++E+ EE EEE+ EEE ++ ++ ++ + KK
Sbjct: 312 PEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 31.9 bits (72), Expect = 0.27
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EE E++ E + E E++E+ EE E++K +
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGG 333
Score = 30.7 bits (69), Expect = 0.63
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ + EE E++ E + E E++E EE +++K +
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEE 330
Score = 28.8 bits (64), Expect = 2.2
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
++E++E+ EE EEE+ EEE ++ ++ ++ K ++ K
Sbjct: 312 PEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
Score = 28.4 bits (63), Expect = 3.5
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ + EE E++ E + E E++E+ ++ + KN
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKN 328
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 39.3 bits (92), Expect = 6e-04
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 6/50 (12%)
Query: 170 EEEEEEEEEEEE------EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EEEEEEEE + E++E E ++EEE E+E ++EE KKKKR K K
Sbjct: 44 EIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKKRVKTK 93
Score = 31.2 bits (71), Expect = 0.26
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LEEE EE+E EEEE++EE E EEE+EEEE
Sbjct: 18 LEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEE 53
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 39.7 bits (93), Expect = 6e-04
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L EE +++ EEE ++E E E E E + ++K K ++NK
Sbjct: 241 LLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKE 286
Score = 33.9 bits (78), Expect = 0.051
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E E EE +++ EEE ++E E + E E K + K
Sbjct: 233 RLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKR 277
Score = 31.6 bits (72), Expect = 0.30
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ EEE ++E E E E E + + K + ++ K++R
Sbjct: 248 DGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKR 288
Score = 29.7 bits (67), Expect = 1.2
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 168 KLEEEEEEEEEEEEE--------EEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ +EE++ +++ + +E ++E+ ++E+ KE EKKK +R+
Sbjct: 294 REAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRR 345
Score = 28.5 bits (64), Expect = 2.5
Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 168 KLEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEKEEEEKKKKRRKNK 213
K E E +EE++ +++ + +E ++E+ ++E++K+R + K
Sbjct: 290 KELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKK 340
Score = 28.5 bits (64), Expect = 2.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEE ++E E E E E + + + K + K+K+R++
Sbjct: 250 EEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKE 291
Score = 27.7 bits (62), Expect = 4.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+L +EE E+E + E++ +E E EE++ E+ E
Sbjct: 195 HQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASR 233
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 39.9 bits (93), Expect = 7e-04
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 157 HLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
HL R LC W EE + + ++ E+E+E E E +EE +K
Sbjct: 529 HLYR-LC--WSLRNSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 36.4 bits (84), Expect = 0.009
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EE + + ++ E+E+E E E +EE KK
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKP 570
Score = 28.3 bits (63), Expect = 4.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE + + ++ E+E E E + + RK
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKP 570
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 39.6 bits (92), Expect = 7e-04
Identities = 13/37 (35%), Positives = 32/37 (86%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
KL +E EEE EEE+++EE+++++++E+E+++ ++++
Sbjct: 40 KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDD 76
Score = 38.8 bits (90), Expect = 0.001
Identities = 13/38 (34%), Positives = 33/38 (86%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
GK EEE EEE+++EE+++++++E+E++++++ +E++
Sbjct: 42 GKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDD 79
Score = 38.1 bits (88), Expect = 0.002
Identities = 12/37 (32%), Positives = 33/37 (89%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEE EEE+++EE+++++++E+E+++++++ E++E
Sbjct: 44 EAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDE 80
Score = 36.1 bits (83), Expect = 0.009
Identities = 10/35 (28%), Positives = 33/35 (94%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE EEE+++EE+++++++E+E+++++++++++E+
Sbjct: 47 EEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDED 81
Score = 35.7 bits (82), Expect = 0.012
Identities = 10/36 (27%), Positives = 35/36 (97%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EEE+++EE+++++++E+E++++++++E++E E+++
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 35.7 bits (82), Expect = 0.013
Identities = 11/35 (31%), Positives = 32/35 (91%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEE+++EE+++++++E+E++++++++E +E+E
Sbjct: 48 EAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 30.7 bits (69), Expect = 0.61
Identities = 7/35 (20%), Positives = 32/35 (91%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+++EE+++++++E+E++++++++E++E+E+ ++
Sbjct: 54 DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 38.3 bits (89), Expect = 8e-04
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEEE+EEE EE E+ E+EEE E+EEEEE++EE+ + K
Sbjct: 53 EEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEK 96
Score = 37.1 bits (86), Expect = 0.002
Identities = 22/44 (50%), Positives = 34/44 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E++EEEEEE+EEE EE E+ E+EEE E++EEEE+ ++ +
Sbjct: 48 QEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDL 91
Score = 37.1 bits (86), Expect = 0.002
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE+EEE EE E+ E+EEE E+EEEEEE EE+ K + K
Sbjct: 54 EEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Score = 36.0 bits (83), Expect = 0.005
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EEE EE E+ E+EEE E+EEEEEE+EE+ + + +K+ N I
Sbjct: 58 DEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDI 102
Score = 35.2 bits (81), Expect = 0.010
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ EEE EE E+ E+EEE E+EEEEEE+EE+ + ++ +KK
Sbjct: 57 EDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNI 99
Score = 29.4 bits (66), Expect = 0.84
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
W K + +E E+ ++E++E++EEEEEE+EEE EE E+ E
Sbjct: 31 WDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIE 69
Score = 26.7 bits (59), Expect = 7.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+EEE E+EEEEEE+EE+ + ++ E++ + +
Sbjct: 69 EDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 39.4 bits (92), Expect = 0.001
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 155 VGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ H+ + GW L+E +E++EE++EE+ EE + EE +EE EEE++
Sbjct: 262 LRHVDKLGIEGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 34.1 bits (78), Expect = 0.053
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EE+ EE + EE +EE EEEE+ E EK E KK K I
Sbjct: 287 DEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVI 331
Score = 32.9 bits (75), Expect = 0.14
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
K EE+ EE + EE +EE EEEE+ E E+ E KK
Sbjct: 286 KDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 29.8 bits (67), Expect = 1.3
Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
Query: 180 EEEEEEEEEEEEE--EEEEEEEKEEEEK 205
E++EE++EE+ EE EE +EE EEEEK
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 38.9 bits (91), Expect = 0.001
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
W E+E+ ++E E + E ++E E + E+EEEK+E KK K
Sbjct: 103 EWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E+EEE++E ++ +E+ +EE EE+EE+ EE++ + K K
Sbjct: 129 SSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKA 174
Score = 37.7 bits (88), Expect = 0.003
Identities = 17/45 (37%), Positives = 33/45 (73%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+EEE++E ++ +E+ +EE EE+EEE +EEE + +K + +++
Sbjct: 133 EDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASEL 177
Score = 36.9 bits (86), Expect = 0.005
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+E+ ++E E + E ++E E + E+E+E++E KK +++
Sbjct: 106 VEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
Score = 36.6 bits (85), Expect = 0.006
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+E+ ++E E + E ++E E + E+EE+++E KK + +
Sbjct: 107 EEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSD 150
Score = 35.4 bits (82), Expect = 0.016
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E + E+EEE++E ++ +E+ +EE EE EEE +++ + +
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 34.6 bits (80), Expect = 0.023
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LE+ +EEE +++E E+ E +++++EEEE E EE+E
Sbjct: 75 LEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDE 110
Score = 34.6 bits (80), Expect = 0.025
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+ ++E E + E ++E E + E+EEE+ E +K K+ ++
Sbjct: 109 DEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEEL 153
Score = 33.9 bits (78), Expect = 0.043
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K EE +++E E+ E +++++EEEE E EE+E ++E
Sbjct: 79 KEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 33.9 bits (78), Expect = 0.044
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ ++E ++ +E+ +EE EE+EEE EEEE + E+EK + +I
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTRI 182
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K +EEE +++E E+ E +++++EEEE E EE E+ +
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSD 113
Score = 32.3 bits (74), Expect = 0.13
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
W + E +++E E+ E +++++EEEE E EE+E+ ++E
Sbjct: 78 WKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEG 116
Score = 32.3 bits (74), Expect = 0.15
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
K +E E+ E +++++EEEE E EE+E+ ++E E
Sbjct: 84 KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 32.3 bits (74), Expect = 0.16
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ ++E E+ E +++++EEEE E EE+E+ +++ E
Sbjct: 82 ERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 31.9 bits (73), Expect = 0.21
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ ++E E + E ++E E + E+EEE++E ++ K+ +
Sbjct: 111 DSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELS 154
Score = 31.5 bits (72), Expect = 0.30
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
+ ++ +E+ +EE EE+EEE EEEE E E++
Sbjct: 138 KDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 31.2 bits (71), Expect = 0.31
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E + E ++E E + E+EEE++E ++ KE+ +++
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDE 158
Score = 30.4 bits (69), Expect = 0.60
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L E+ +EEE +++E E+ E +++++EEEE + EE+
Sbjct: 74 LLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEED 109
Score = 26.9 bits (60), Expect = 7.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEE 193
+ +EE EE+EEE EEEE E E+E
Sbjct: 144 KAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 38.8 bits (91), Expect = 0.001
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-----KEEEEKKKKRRKNKI 214
+ EE EEE + E E E + ++E+E EE EE+E K
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDK 282
Score = 36.9 bits (86), Expect = 0.006
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
KL+E E EE EEE + E E E + ++E++ E+
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEE 262
Score = 34.6 bits (80), Expect = 0.035
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++E E + ++E+E EE+ EE+E+ ++ E K K
Sbjct: 242 EIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKE 288
Score = 33.8 bits (78), Expect = 0.061
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E+E EE+ EE+E+ ++ E+ + E K+K+ +
Sbjct: 251 GTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEEL 294
Score = 32.3 bits (74), Expect = 0.20
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
K ++E+E EE+ EE+E+ ++ E+ +K E K+KK
Sbjct: 249 TKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKD 291
Score = 31.5 bits (72), Expect = 0.34
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+E E EE EEE + E E E + ++E+E ++
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEE 262
Score = 31.1 bits (71), Expect = 0.42
Identities = 10/45 (22%), Positives = 27/45 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ ++E+E EE+ EE+E+ ++ E+ ++ E K+++ ++
Sbjct: 250 KGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEEL 294
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E E EE EEE + E E E + ++++E ++
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDP 264
Score = 30.0 bits (68), Expect = 1.1
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
K E+E EE+ EE+E+ ++ E+ ++ E +E+K +
Sbjct: 253 KQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
Score = 28.8 bits (65), Expect = 2.5
Identities = 10/32 (31%), Positives = 24/32 (75%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+++E + + EE+ ++EE+KE+ ++++K R
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKER 679
Score = 26.9 bits (60), Expect = 9.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+++E + + EE+ K+EE+K+K +R+ K
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 38.4 bits (89), Expect = 0.002
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
G+ + + E EE E +E E E EK
Sbjct: 381 GQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK 419
Score = 36.1 bits (83), Expect = 0.011
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E EE E +E E E EK
Sbjct: 389 VDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Score = 35.7 bits (82), Expect = 0.014
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ + E EE E +E E E E+
Sbjct: 388 QVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Score = 35.3 bits (81), Expect = 0.017
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ + + E EE E +E E +
Sbjct: 380 AGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPE 415
Score = 34.2 bits (78), Expect = 0.043
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ + E EE E +E E E ++ + ++
Sbjct: 388 QVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431
Score = 33.8 bits (77), Expect = 0.054
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ + E EE E +E E E E+
Sbjct: 386 AHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Score = 31.1 bits (70), Expect = 0.42
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+ + + + + E EE E
Sbjct: 374 EQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAH 409
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 38.5 bits (90), Expect = 0.002
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE E++++ E+EEE+++ E++ EE
Sbjct: 265 PEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 38.1 bits (89), Expect = 0.002
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L + EEE E++++ E+EEE+++ E
Sbjct: 258 LPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAE 293
Score = 38.1 bits (89), Expect = 0.003
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEE E++++ E+EEE+++ E+
Sbjct: 262 PQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRA 296
Score = 37.7 bits (88), Expect = 0.003
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ EEE E++++ E+EEE+ + E++
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDR 295
Score = 35.8 bits (83), Expect = 0.014
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE E++++ E+EEE+++ E E
Sbjct: 264 PPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298
Score = 29.6 bits (67), Expect = 1.2
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ EEE E+++ E+++
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEE 287
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L+ E EE E E+ E EE+ E E E E+
Sbjct: 398 LQREAEERLEAEQAERAEEDARLRELYPLPEDEFED 433
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE + E EE E E+ E EE+ E E
Sbjct: 394 EEEALQREAEERLEAEQAERAEEDARLRELYPLPE 428
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+LE E+ E EE+ E E+E E+E+E EE + +++
Sbjct: 405 RLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 37.8 bits (88), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EE+ E E+E E+E+E EE + +EEEE +
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 37.8 bits (88), Expect = 0.003
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ EE E E+ E EE+ E E+E ++E+E ++ + +
Sbjct: 400 REAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEE 444
Score = 37.8 bits (88), Expect = 0.003
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEE + E EE E E+ E EE+ E
Sbjct: 393 EEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
Score = 37.8 bits (88), Expect = 0.003
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEEE + E EE E E+ E EE+ +E
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYP 425
Score = 37.5 bits (87), Expect = 0.004
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + EEEE + E EE E E+ E EE+ E
Sbjct: 389 ISQREEEEALQREAEERLEAEQAERAEEDARLRELY 424
Score = 37.1 bits (86), Expect = 0.004
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EE+ E E+E E+E+E EE + EEE++ +
Sbjct: 410 QAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 37.1 bits (86), Expect = 0.004
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L + EEEE + E EE E E+ E EE+ + E
Sbjct: 388 LISQREEEEALQREAEERLEAEQAERAEEDARLREL 423
Score = 37.1 bits (86), Expect = 0.005
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE + E EE E E+ E EE+ E E+
Sbjct: 395 EEALQREAEERLEAEQAERAEEDARLRELYPLPED 429
Score = 36.7 bits (85), Expect = 0.006
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + E EE E E+ E EE+ E E+E
Sbjct: 396 EALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Score = 36.7 bits (85), Expect = 0.006
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ E EE+ E E+E E+E+E EE + EE+++ R
Sbjct: 410 QAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 36.3 bits (84), Expect = 0.010
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+ E EE+ E E+E E+E+E E+ + E++++ R
Sbjct: 409 EQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 35.5 bits (82), Expect = 0.015
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE+ E E+E E+E+E EE + EE+EE
Sbjct: 412 ERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 35.1 bits (81), Expect = 0.018
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E EE E E+ E EE+ E E+E
Sbjct: 397 ALQREAEERLEAEQAERAEEDARLRELYPLPEDEF 431
Score = 35.1 bits (81), Expect = 0.022
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + EEEE + E EE E E+ E EE
Sbjct: 387 ELISQREEEEALQREAEERLEAEQAERAEEDARLR 421
Score = 34.8 bits (80), Expect = 0.025
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K+ E + EEEE + E EE E E+ E E++ +
Sbjct: 384 KVAELISQREEEEALQREAEERLEAEQAERAEEDARLR 421
Score = 34.4 bits (79), Expect = 0.037
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+ + E + EEEE + E EE E E+ E E+ + R
Sbjct: 380 AEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLR 421
Score = 34.4 bits (79), Expect = 0.040
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ + E + EEEE + E EE E E+ + EE + R
Sbjct: 382 DAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRE 422
Score = 32.1 bits (73), Expect = 0.21
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E E+ + E + EEEE + E EE E ++ E ++ R
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLR 421
Score = 31.3 bits (71), Expect = 0.33
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+E E+ + E + EEEE + E EE E E+ E+
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAER 413
Score = 30.1 bits (68), Expect = 0.86
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E E+ + E + EEEE + E EE + E+
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQA 411
Score = 30.1 bits (68), Expect = 0.92
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++E E+ + E + EEEE + E EE+ E E
Sbjct: 375 EYDQEAEDAKVAELISQREEEEALQREAEERLEAE 409
Score = 29.0 bits (65), Expect = 2.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E ++E E+ + E + EEEE + E E+ E ++ +R
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAER 413
Score = 27.1 bits (60), Expect = 7.4
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
GW K++ ++ E ++E E+ + E + EEEE + E E++
Sbjct: 365 GW-KIDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEER 405
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 35.7 bits (83), Expect = 0.002
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+ E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 34.1 bits (79), Expect = 0.006
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ E EEEEE E+ E E+EE+EEE+++ + +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 34.1 bits (79), Expect = 0.007
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ E EEEEE E+ E E+EE+EEE++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 33.7 bits (78), Expect = 0.008
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
E EEEEE E+ E E+EE+EEE+++++ +
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 33.7 bits (78), Expect = 0.009
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E EEEEE E+ E E+EE+EEE+ +++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 33.3 bits (77), Expect = 0.010
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E EEEEE E+ E E+EE+EEE++ ++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 31.8 bits (73), Expect = 0.038
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ E EEEEE E+ E E+EE+EE+++++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDD 72
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 38.1 bits (89), Expect = 0.002
Identities = 10/46 (21%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L++ ++EEEE +E++++E++ + +++++EE + + +R
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTI 266
Score = 35.7 bits (83), Expect = 0.015
Identities = 11/46 (23%), Positives = 29/46 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++EEEE +E++++E++ + ++++EEE + E ++ K
Sbjct: 225 IDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVS 270
Score = 33.4 bits (77), Expect = 0.077
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ ++EEEE +E++++E++ + +++ EEE + R + I
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTI 266
Score = 33.4 bits (77), Expect = 0.083
Identities = 9/44 (20%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ ++EEEE +E++++E++ + ++++E+E + + ++ K
Sbjct: 224 DIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIK 267
Score = 27.3 bits (61), Expect = 7.0
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
KL+ E + E ++ ++EEEE +E++++E++ + +
Sbjct: 213 KLDVEIQNELDDIDDEEEERVLADEDDDDEDDMFDMD 249
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 37.9 bits (88), Expect = 0.002
Identities = 18/39 (46%), Positives = 32/39 (82%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
K ++EE+++++ + EE+E +E+EEEEE EEE+EEE++
Sbjct: 246 KSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 36.7 bits (85), Expect = 0.004
Identities = 18/37 (48%), Positives = 30/37 (81%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K ++EE+++++ + EE+E +E+EEEEE EE+EEEE
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEE 281
Score = 35.2 bits (81), Expect = 0.015
Identities = 18/35 (51%), Positives = 30/35 (85%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+++++ + EE+E +E+EEEEE EEEEEE++E+E
Sbjct: 251 EDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 35.2 bits (81), Expect = 0.016
Identities = 15/36 (41%), Positives = 30/36 (83%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++ ++EE+++++ + EE+E +E+EEEEE +EEEE+
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 34.0 bits (78), Expect = 0.044
Identities = 15/38 (39%), Positives = 30/38 (78%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++ ++EE+++++ + EE+E +E+EEEEE EEEE++
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 33.3 bits (76), Expect = 0.073
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
++ + EE+E +E+EEEEE EEEEEEE+E+
Sbjct: 252 DDDQDGDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 31.3 bits (71), Expect = 0.30
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
G EE+E +E+EEEEE EEEEEEE+E+E
Sbjct: 257 GDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 30.9 bits (70), Expect = 0.36
Identities = 13/37 (35%), Positives = 30/37 (81%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++ ++EE+++++ + EE+E +E+EEEE+ EEE+++
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 29.8 bits (67), Expect = 0.87
Identities = 12/37 (32%), Positives = 30/37 (81%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++ ++EE+++++ + EE+E +E+EEE+E EE++++
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 37.9 bits (88), Expect = 0.003
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
E EEEEEEEEEEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/38 (52%), Positives = 22/38 (57%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
L+E+ E EEEEEEEEEEEEE E E EE
Sbjct: 390 LKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPV 427
Score = 37.1 bits (86), Expect = 0.004
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+E EEEEEEEEEEEEE E E EE
Sbjct: 398 VERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 36.7 bits (85), Expect = 0.005
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEE 196
+ EEEEEEEEEEEEE E E EE
Sbjct: 400 RWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 36.7 bits (85), Expect = 0.006
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E EEEEEEEEEEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 36.3 bits (84), Expect = 0.008
Identities = 19/32 (59%), Positives = 19/32 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
EEEEEEEEEEEEE E E EE E E
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPE 434
Score = 35.2 bits (81), Expect = 0.020
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEEEEEEEEEEEE E E +E
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 34.8 bits (80), Expect = 0.023
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E EEEEEEEEEEEEE E E E+
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 34.0 bits (78), Expect = 0.045
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+E+ E EEEEEEEEEEEEE E + E+
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPV 427
Score = 27.9 bits (62), Expect = 4.0
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++E E +E+ E EEEEEEEEEEE+E E +
Sbjct: 383 IDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAE 420
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+EE EE E E+EEEE+ +KEEEE++ +RKNK
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNK 180
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 36.9 bits (86), Expect = 0.003
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E ++ + EE EE E +EEE E +++E KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 33.8 bits (78), Expect = 0.036
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++ + EE EE E +E+E E +KK K K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 33.1 bits (76), Expect = 0.068
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E ++ + EE EE E +EEE E EKK+ ++K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 32.3 bits (74), Expect = 0.13
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E ++ + EE EE E +EEE E E+K+ K++K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.4 bits (69), Expect = 0.54
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
K + EE EE E +EEE E EK+E +KKK
Sbjct: 160 KDAKLLEEFA---AEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 35.5 bits (81), Expect = 0.003
Identities = 13/35 (37%), Positives = 30/35 (85%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
LE EE+ + + +EEE++++E+EE+++E+++E ++E
Sbjct: 6 LEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 34.0 bits (77), Expect = 0.011
Identities = 11/34 (32%), Positives = 30/34 (88%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE+ + + +EEE++++E+EE+++E+++++++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 32.8 bits (74), Expect = 0.027
Identities = 11/34 (32%), Positives = 29/34 (85%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E EE+ + + +EEE++++E+EE+++E++ E++++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 32.8 bits (74), Expect = 0.032
Identities = 10/33 (30%), Positives = 29/33 (87%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
G+ + + + +EEE++++E+EE+++E+++E+++E
Sbjct: 8 GEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.1 bits (67), Expect = 0.26
Identities = 10/31 (32%), Positives = 25/31 (80%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E EE+ + + +EEE++++E+EE++ E++++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDED 37
Score = 28.6 bits (63), Expect = 0.89
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EE+ + + +EEE++++E+EE ++E+ +
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDED 37
Score = 28.6 bits (63), Expect = 0.96
Identities = 10/31 (32%), Positives = 24/31 (77%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E EE+ + + +EEE++++E+EE+ +E++ +
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDED 37
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 37.3 bits (87), Expect = 0.004
Identities = 10/39 (25%), Positives = 35/39 (89%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
L++++ ++++++E+++E++++++ ++E+EE+KE +E +K
Sbjct: 142 LDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEK 180
Score = 37.3 bits (87), Expect = 0.004
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++ ++E+EE++E +E E+ ++++ +E + E ++ R+ K
Sbjct: 162 DDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAK 205
Score = 35.7 bits (83), Expect = 0.012
Identities = 9/41 (21%), Positives = 31/41 (75%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ ++++++E+++E++++++ ++E+EE++E KE E+
Sbjct: 144 DDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Score = 35.4 bits (82), Expect = 0.019
Identities = 8/40 (20%), Positives = 31/40 (77%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+++++++E+++E++++++ ++E+EE++E +E E+
Sbjct: 146 DIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDD 185
Score = 35.0 bits (81), Expect = 0.022
Identities = 9/40 (22%), Positives = 32/40 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
++ ++++++E+++E++++++ ++E+EE++E +E EK
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Score = 35.0 bits (81), Expect = 0.022
Identities = 8/38 (21%), Positives = 34/38 (89%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++++ ++++++E+++E++++++ ++E+EEK+E ++ +K
Sbjct: 143 DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEK 180
Score = 34.6 bits (80), Expect = 0.034
Identities = 7/43 (16%), Positives = 34/43 (79%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+++ ++++++E+++E++++++ ++E+EE+++ +E +K +
Sbjct: 144 DDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Score = 34.2 bits (79), Expect = 0.044
Identities = 6/39 (15%), Positives = 34/39 (87%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ ++++ ++++++E+++E++++++ ++E+E+++E K+ +
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELE 179
Score = 30.7 bits (70), Expect = 0.50
Identities = 7/44 (15%), Positives = 35/44 (79%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++ ++++ ++++++E+++E++++++ ++E EE+++ K+ K
Sbjct: 139 DDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 35.4 bits (82), Expect = 0.004
Identities = 16/35 (45%), Positives = 17/35 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E EEE EEEEE E E+EE
Sbjct: 16 EEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEE 50
Score = 35.0 bits (81), Expect = 0.007
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
KL EE E E EEE EEE+E E
Sbjct: 10 KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAEL 46
Score = 31.9 bits (73), Expect = 0.071
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 158 LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LSR W + + EE E E EEE E+EEE
Sbjct: 3 LSR-----WSRRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEA 44
Score = 31.5 bits (72), Expect = 0.11
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E EEE EEEEE E E+E+ EE
Sbjct: 19 AEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEE 54
Score = 31.1 bits (71), Expect = 0.14
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E EEE EEEEE E E++E E+
Sbjct: 19 AEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEE 54
Score = 31.1 bits (71), Expect = 0.14
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEE EEEEE E E+EE EE
Sbjct: 21 PAETAEEEAAAAAPAPAPEEEEEAELEDEELLEEL 55
Score = 30.3 bits (69), Expect = 0.25
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEE EEEEE E E+EE EE +
Sbjct: 22 AETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56
Score = 29.2 bits (66), Expect = 0.58
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE E E EEE EE+EE E
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAEL 46
Score = 28.8 bits (65), Expect = 0.81
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE EEEEE E E+EE E+ +
Sbjct: 24 TAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLP 58
Score = 28.8 bits (65), Expect = 0.96
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ EEE EEEEE E E+EE EE +
Sbjct: 23 ETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLP 58
Score = 26.1 bits (58), Expect = 7.6
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEE E E+EE EE + + +
Sbjct: 32 AAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPG 66
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 35.3 bits (82), Expect = 0.004
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 35.3 bits (82), Expect = 0.004
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.5 bits (80), Expect = 0.008
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 34.5 bits (80), Expect = 0.009
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE++EEEEEEEE+E+ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 33.0 bits (76), Expect = 0.027
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE++EEEEEEEE+EE E+E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 28.8 bits (65), Expect = 0.96
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 183 EEEEEEEEEEEEEEEEEKEEEEK 205
EE++EEEEEE+E+EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
Score = 27.2 bits (61), Expect = 2.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 186 EEEEEEEEEEEEEEKEEEEKKKK 208
EE++EEE+EEEEK++
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
Score = 27.2 bits (61), Expect = 2.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKK 206
EE++EEEEE+EE+E+
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
Score = 26.8 bits (60), Expect = 3.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKKK 207
EE++EEEE+EEE+++
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 37.0 bits (86), Expect = 0.005
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ +E + + EE +EEE++EE++ ++ EE K+ E+ K R
Sbjct: 58 IAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDE 101
Score = 33.5 bits (77), Expect = 0.074
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K + + EE +EEE++EE++ ++ EE ++ EE K +
Sbjct: 60 KEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARD 100
Score = 32.3 bits (74), Expect = 0.17
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 158 LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
L + K++ EE +EEE++EE++ ++ EE ++ EE
Sbjct: 54 LREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 31.6 bits (72), Expect = 0.32
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ EE +EEE++EE++ ++ EE ++ +E + + + +
Sbjct: 65 IDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEVLEQ 105
Score = 30.8 bits (70), Expect = 0.45
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
EE +EEE++EE++ ++ EE ++ EE K
Sbjct: 64 KIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPK 97
Score = 28.9 bits (65), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EE +E + + EE +EEE++EE++ + EE K
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENK 89
Score = 27.7 bits (62), Expect = 5.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE EE +E + + EE +EEE++EE+ ++
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDS 85
Score = 27.7 bits (62), Expect = 5.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L EE EE +E + + EE +EEE++EE + ++
Sbjct: 49 LTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDD 84
Score = 26.9 bits (60), Expect = 8.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
G + EE EE +E + + EE +EEE+ EE++
Sbjct: 43 RGSFRDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDND 83
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 36.9 bits (86), Expect = 0.005
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ EEE EE E E+E+ EEE+EEEEKE ++ K+ +K
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSK 43
Score = 35.7 bits (83), Expect = 0.012
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E+ EEE EE E E+E+ EEE+EEEE++ E+ K+
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQG 40
Score = 33.4 bits (77), Expect = 0.073
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
KLEEE EE E E+E+ EEE+EEEE+E E K+ K KK I
Sbjct: 6 KLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKNFGKGI 52
Score = 33.0 bits (76), Expect = 0.082
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ EEE EE E E+E+ EEE+EEEE+E E ++ + K
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKNF 48
Score = 30.3 bits (69), Expect = 0.60
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ EEE EE E E+E+ E+E+EE++K+ ++
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERL 37
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 36.1 bits (84), Expect = 0.005
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
LE +E E E++ +E +EE +EEE+++ EE ++KR
Sbjct: 27 ALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKR 68
Score = 33.8 bits (78), Expect = 0.032
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
K EEEE E +E E E++ +E +EE EEE+ +
Sbjct: 21 KEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDR 59
Score = 29.5 bits (67), Expect = 0.88
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E++ +E +EE +EEE++ EE K E K K+K
Sbjct: 35 AHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEKSK 80
Score = 26.8 bits (60), Expect = 7.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ +EEEEE E +E + EKK
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKK 43
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 36.6 bits (85), Expect = 0.005
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 170 EEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEKEEEEKKKKRR 210
+++ ++++ E+E E EE+E EEEE+ EEEK ++
Sbjct: 130 SSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 35.9 bits (83), Expect = 0.009
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEE---------EEEEEEEEKEEEEKKKKRRKNK 213
+ + +++ ++++ E+E +E EE+E+EEEEK + K +
Sbjct: 125 SSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAR 177
Score = 34.3 bits (79), Expect = 0.028
Identities = 12/54 (22%), Positives = 30/54 (55%), Gaps = 9/54 (16%)
Query: 170 EEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ +++ ++++ E+E +E EE+E EE+E+ +++K R+ +I
Sbjct: 128 SDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEI 181
Score = 31.6 bits (72), Expect = 0.23
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
K+++E EE+E EEEE+ EEE+ EEE
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 31.2 bits (71), Expect = 0.32
Identities = 6/53 (11%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE----------EKEEEEKKKKRRK 211
+ ++ + + + +++ ++++ E+E E+ EE+++++ K
Sbjct: 117 SDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEK 169
Score = 30.8 bits (70), Expect = 0.39
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
LE+ ++E EE+E EEEE+ EEE+ EEE
Sbjct: 151 LEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 30.1 bits (68), Expect = 0.71
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 170 EEEEEEEEEEEEEE----------EEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
++ ++++ E+E E EE+E EEEE+ E+E+ +++ N
Sbjct: 133 DDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEILTGN 185
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 36.8 bits (85), Expect = 0.005
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 117 AGEQIKDIIVNGVQPPTLNKKLRVLVDF--SSPNIAKEMHVGHLSRSLCHGWGKLEEEE- 173
G I DI +N + + +LVD + I + G + +E++E
Sbjct: 285 RGGIILDISLNEFE----QDAVPLLVDLERNGNRIKELADFGDYYEDIFEVVEVVEKQEG 340
Query: 174 --EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE +EE E+E E +E EE E E E +
Sbjct: 341 DVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVD 377
Score = 36.8 bits (85), Expect = 0.006
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE +EE E+E E +E EE E E E + ++ ++ + +I
Sbjct: 345 EESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETEI 388
Score = 33.7 bits (77), Expect = 0.048
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE +EE E+E E +E EE E E E + ++
Sbjct: 345 EESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
Score = 32.6 bits (74), Expect = 0.12
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ +EE E+E E +E EE E E E + + E +
Sbjct: 346 ESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAE 385
Score = 29.5 bits (66), Expect = 1.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E++E + EE +EE E+E E +E EE +
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEV 374
Score = 28.7 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+E E +E EE E E E + ++ E E E
Sbjct: 353 EDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 36.2 bits (84), Expect = 0.006
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ E +EEEE EEE E+++EEEE +E EE+ KE+EE +K
Sbjct: 38 REGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 36.2 bits (84), Expect = 0.006
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEE EE ++ EE+ E E +EEEE EEE E+K+EEE++K+R +
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQAR 69
Score = 35.1 bits (81), Expect = 0.012
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEEE EE ++ EE+ E E +EEEE EEE EK++EE+++K R+ +
Sbjct: 23 AEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA 68
Score = 34.7 bits (80), Expect = 0.018
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K E E +EEEE EEE E+++EEEE +E EE+ ++E+E+ +K
Sbjct: 36 EKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 34.3 bits (79), Expect = 0.022
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 148 NIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
A+E + G+ +EEEE EEE E+++EEEE +E EE+ +E++E E+ K
Sbjct: 21 REAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKS 80
Query: 208 K 208
Sbjct: 81 S 81
Score = 33.9 bits (78), Expect = 0.032
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E +EEEE EEE E+++EEEE +E EE+ +E+++ ++ K+
Sbjct: 37 KREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSF 82
Score = 32.0 bits (73), Expect = 0.12
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE ++ EE+ E E +EEEE EEE E++++EEE K+++ + K
Sbjct: 27 EREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Score = 31.6 bits (72), Expect = 0.19
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ ++ E EEEE EE ++ EE+ E E +EEEE +EE EKKK+ + K
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Score = 28.5 bits (64), Expect = 2.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
G + + EE++ ++ E EEEE EE ++ EEK E E+K++
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEEL 48
Score = 27.4 bits (61), Expect = 5.2
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K + EE++ ++ E EEEE EE ++ EE+ + E +++++ + +
Sbjct: 7 KRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEERE 53
Score = 27.0 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K +EEEE +E EE+ +E+EE E+ + E+E +K
Sbjct: 54 KKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDK 91
Score = 27.0 bits (60), Expect = 7.1
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E+++EEEE +E EE+ +E+EE E+ + EE
Sbjct: 50 EEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEE 86
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 36.2 bits (84), Expect = 0.006
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E+ E E E E + EEE +KK
Sbjct: 117 EDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 36.2 bits (84), Expect = 0.007
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE+ E E E E E EE+ +K
Sbjct: 116 EEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 35.8 bits (83), Expect = 0.009
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
L EEE+ E E E E E +++ +K+
Sbjct: 113 LMEEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKS 156
Score = 34.6 bits (80), Expect = 0.022
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E E E E E+E E+K
Sbjct: 117 EDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 28.5 bits (64), Expect = 2.3
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
K +E+ +++ +E + +E+EEE++E
Sbjct: 183 PKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 27.3 bits (61), Expect = 4.9
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
+E+ +++ +E + +E+EEE++E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 27.3 bits (61), Expect = 4.9
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+E+ +++ +E + +E+EEE++E
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 26.9 bits (60), Expect = 8.0
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
E E E + E + E E EEE
Sbjct: 26 EPEPEVPQTEATDPSEVVVETVTEEEGG 53
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 36.3 bits (84), Expect = 0.006
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +EE++ +EE+ E EE E+EE E+ EE E + ++ K NK
Sbjct: 22 ENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNK 65
Score = 35.9 bits (83), Expect = 0.007
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE++ +EE+ E EE E+EE E+ EE E + EE K + K K
Sbjct: 24 KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
Score = 35.9 bits (83), Expect = 0.008
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EE+ E EE E+EE E+ EE E + EE ++E K K K+
Sbjct: 29 GKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKL 73
Score = 35.9 bits (83), Expect = 0.009
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 168 KLEEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E++ +EE+ E EE E+EE E+ EE E + E+ ++E K + +NK
Sbjct: 24 KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENK 71
Score = 35.1 bits (81), Expect = 0.013
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+EE+ +E E +EE++ +EE+ E EE E+EE E+ ++
Sbjct: 13 MEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESN 52
Score = 34.3 bits (79), Expect = 0.022
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EE+ +E E +EE++ +EE+ E EE ++EE + N++
Sbjct: 8 AKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEV 54
Score = 34.3 bits (79), Expect = 0.028
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
LE EE E+EE E+ EE E + EE ++E K +EE KK
Sbjct: 34 LEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
Score = 34.0 bits (78), Expect = 0.037
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E EE E+EE E+ EE E + EE ++E + +++ K+ +N++
Sbjct: 33 DLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENEL 77
Score = 32.8 bits (75), Expect = 0.075
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+ +E E +EE++ +EE+ E EE E++E E ++ + KI
Sbjct: 12 NMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKI 56
Score = 32.8 bits (75), Expect = 0.084
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E ++ + E EE+ +E E +EE++ +EE+ E EE +K+
Sbjct: 4 ECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKE 42
Score = 32.0 bits (73), Expect = 0.16
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++ + E EE+ +E E +EE++ +EE+ E EE EK++
Sbjct: 6 KDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEI 44
Score = 32.0 bits (73), Expect = 0.17
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ + E EE+ +E E +EE++ +EE+ + EE +K++ ++
Sbjct: 5 CKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDS 48
Score = 28.2 bits (63), Expect = 3.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E+E ++ + E EE+ +E E +EE+K +EE
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDL 34
Score = 27.4 bits (61), Expect = 4.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE E+ EE E + EE ++E + +EE +K E E
Sbjct: 40 EKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENE 76
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 35.6 bits (83), Expect = 0.006
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EE +EEEEEE+++ ++ E+E+ E ++ K K R K+
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKV 151
Score = 34.9 bits (81), Expect = 0.011
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EE +EEEEEE+++ ++ E+E+ E K+ + K +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 34.9 bits (81), Expect = 0.011
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E EE +EEEEEE+++ ++ E+E+ E + + K +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.7 bits (78), Expect = 0.028
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E EE +EEEEEE+++ ++ E+E+ E ++ + + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.045
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E EE +EEEEEE+++ ++ E+E+ E ++ + + +
Sbjct: 110 FEPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 35.3 bits (82), Expect = 0.006
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E E + +EE++ +EEE + + EE KE E +KKK
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 33.0 bits (76), Expect = 0.036
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ E + +EE++ +EEE + + EE +E E EK++
Sbjct: 92 RAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 33.0 bits (76), Expect = 0.038
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+E E + +EE++ +EEE + + EE ++ E EKKK
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 32.3 bits (74), Expect = 0.062
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+++E E + +EE++ +EEE + + EE +E+E E+KK
Sbjct: 87 DEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 30.3 bits (69), Expect = 0.28
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E E + +EE++ +EEE + + E+ +E +++K+
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
Score = 27.2 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E E + +EE++ +EEE K + E+ K+R + K
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 26.1 bits (58), Expect = 8.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E E + +EE++ +EEE + + ++ K R+ +
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 36.8 bits (85), Expect = 0.007
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E +++E+E E E+ E E E + E+ EE+E+E++ +
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Score = 36.8 bits (85), Expect = 0.008
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 129 VQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEE 188
V L L VL + + +++ G +E+E E E+ E E E +
Sbjct: 620 VTNEGLQLILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDG 679
Query: 189 EEEEEEEEEEEKEEEEKKKKRRK 211
E+ EE+E+E++ E E K
Sbjct: 680 EDGEEDEQEDDAEANEGVVPIDK 702
Score = 32.2 bits (73), Expect = 0.22
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E+ E E E + E+ EE+E+E++ E E K RR
Sbjct: 665 CEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRA 707
Score = 31.4 bits (71), Expect = 0.38
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E+ E E E + E+ EE+E+E++ E E ++ ++ K
Sbjct: 668 IEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKV 711
Score = 29.1 bits (65), Expect = 2.2
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ E E E + E+ EE+E+E++ E E + +
Sbjct: 668 IEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRA 707
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEE 194
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEE 195
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEE 196
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEE 197
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEE 198
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.6 bits (80), Expect = 0.007
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEE 199
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.9 bits (78), Expect = 0.012
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEEEEEEEEEEEE+ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.9 bits (78), Expect = 0.014
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEE 203
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.034
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEE 202
EEEEEEEEEEEEEEEE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.035
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKE 201
EEEEEEEEEEEEEEEE E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 28.1 bits (63), Expect = 1.7
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEK 205
EEEEEEEEEEE+EEEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEES 92
Score = 27.3 bits (61), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 187 EEEEEEEEEEEEEKEEEEKKKK 208
EEEEEEEE+EEEE+++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEES 92
Score = 26.5 bits (59), Expect = 5.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKK 206
EEEEEEEEEE+EEEE+
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEES 92
Score = 26.5 bits (59), Expect = 5.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 186 EEEEEEEEEEEEEEKEEEEKKK 207
EEEEEEEEE+EEEE++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEES 92
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 36.9 bits (85), Expect = 0.007
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E+EE +E E+ E+E E + +EE+ E+ +E E K
Sbjct: 953 DEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAY 992
Score = 34.6 bits (79), Expect = 0.039
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E+EE +E E+ E+E E + +EE+ E +E + K ++
Sbjct: 953 DEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 34.2 bits (78), Expect = 0.040
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+ E+E E + +EE+ E+ +E E + + K+R+
Sbjct: 958 SDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRRK 1001
Score = 34.2 bits (78), Expect = 0.046
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE--EEKKKKRRK 211
+E E+ E+E E + +EE+ E+ +E E + + + KRRK
Sbjct: 959 DESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRRK 1001
Score = 30.8 bits (69), Expect = 0.53
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 165 GWGKL----EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
GW L ++E +E EEE E E ++E +E +E+EE +E
Sbjct: 919 GWSFLMVGSDDESDESEEEVSEYEASSDDESDETDEDEESDE 960
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 36.5 bits (85), Expect = 0.007
Identities = 14/43 (32%), Positives = 32/43 (74%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
KL+++EE + E+EE+E +E++ + +++EEK+++E +K +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 35.4 bits (82), Expect = 0.019
Identities = 14/46 (30%), Positives = 32/46 (69%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
W ++EE + E+EE+E +E++ + +++EE+K++E +K ++ K
Sbjct: 545 WKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 32.7 bits (75), Expect = 0.12
Identities = 12/44 (27%), Positives = 32/44 (72%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++EE + E+EE+E +E++ + +++E++++++ +K K KI
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 36.4 bits (85), Expect = 0.008
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 146 SPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ AKE+ V L G+ EEEEEE EEEE + E + ++E+++
Sbjct: 212 PVDFAKEL-VAIL-------LGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQA 263
Query: 206 KKKRRKN 212
+R++
Sbjct: 264 PPQRQEP 270
Score = 27.9 bits (63), Expect = 3.8
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE EEEE + E + ++E+++ ++++ K
Sbjct: 231 EEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEA 274
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 35.4 bits (82), Expect = 0.008
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+EE EE+E++E +EEE + ++E++EE + EE
Sbjct: 11 EEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEE 46
Score = 35.4 bits (82), Expect = 0.008
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+EE EE+E++E +EEE + ++E++EE EEE+ R+
Sbjct: 13 DEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQ 54
Score = 34.3 bits (79), Expect = 0.018
Identities = 13/44 (29%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+E++E +EEE + ++E++EE + EEE+ ++++ +
Sbjct: 18 EEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPE 61
Score = 33.1 bits (76), Expect = 0.057
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
L EE+E++E +EEE + ++E++EE + EE++ ++
Sbjct: 16 LPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQ 54
Score = 32.0 bits (73), Expect = 0.15
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E ++ EE+EE EE+E++E +EEE + ++E+
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQ 38
Score = 31.6 bits (72), Expect = 0.15
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++ EE+EE EE+E++E +EEE + + E++E
Sbjct: 6 ESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDE 40
Score = 31.2 bits (71), Expect = 0.24
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ EE+EE EE+E++E +EEE + +++++EE
Sbjct: 7 SDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEE 41
Score = 30.0 bits (68), Expect = 0.50
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E E ++ EE+EE EE+E++E +EEE ++++ +
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEE 41
Score = 30.0 bits (68), Expect = 0.61
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE + ++E++EE + EEE+ +EEE + E
Sbjct: 28 EEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEA 62
Score = 28.9 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E ++ EE+EE EE+E++E +EEE + +
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPD 35
Score = 28.5 bits (64), Expect = 1.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+E++EE + EEE+ +EEE + E E E + E +K
Sbjct: 36 DEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFEK 72
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + ++E++EE + EEE+ +EEE + E E
Sbjct: 30 EVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEA 64
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE + ++E++EE + EEE+ +EEE E E
Sbjct: 29 EEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAE 63
Score = 27.3 bits (61), Expect = 5.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ ++E++EE + EEE+ +EEE + + E E
Sbjct: 31 VDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAE 65
Score = 27.0 bits (60), Expect = 6.6
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
L ++E++EE + EEE+ +EEE + E E E + + +K
Sbjct: 33 LPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFEK 72
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 36.6 bits (84), Expect = 0.008
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE E+ + E E++ EE E E+E+E+E+E E +++ R K
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 36.2 bits (83), Expect = 0.009
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K EE E+ + E E++ EE E E+E+E+E E+E E + ++ K
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 36.2 bits (83), Expect = 0.011
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
KL ++ EE E+ + E E++ EE E E+E+EKE E ++++
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616
Score = 35.4 bits (81), Expect = 0.019
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
K EE E+ + E E++ EE E E+E+E+E + E E++ +R
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 36.6 bits (84), Expect = 0.008
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK--KKKRRKNKI 214
+ E++ + E EE+E EEE+EEEE KE K KKK+RKN +
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNML 803
Score = 31.6 bits (71), Expect = 0.31
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE+E EEE+EEEE +E + +KK+++ K
Sbjct: 768 AESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLK 804
Score = 31.2 bits (70), Expect = 0.42
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E EE+E EEE+EEEE +E ++ +++++K K+
Sbjct: 768 AESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLKS 805
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 35.8 bits (83), Expect = 0.008
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E ++ +++EE EE +E ++ ++ E KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 33.9 bits (78), Expect = 0.030
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E ++ +++EE EE +E ++ ++ E KKK+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 32.4 bits (74), Expect = 0.100
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++ +++EE EE +E K+ +K K K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKK 195
Score = 31.2 bits (71), Expect = 0.23
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++ +++EE EE +E +K +K + +K K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 27.0 bits (60), Expect = 5.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E ++ +++EE EE +E KK K+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKV 190
Score = 26.6 bits (59), Expect = 8.1
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
K +EE EE +E ++ ++ E ++K+
Sbjct: 163 KQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 34.3 bits (79), Expect = 0.008
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E ++EEEEEEEEE++ E+ +E+E +E E E+ ++ RR ++
Sbjct: 5 EAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDR 48
Score = 31.6 bits (72), Expect = 0.074
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEEEEEEEE++ E+ +E+E +E E E + ++ RR+ K
Sbjct: 10 DEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREK 52
Score = 30.1 bits (68), Expect = 0.21
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EEEEEEEEE++ E+ +E+E +E E E+++ ++R K
Sbjct: 11 EEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKE 53
Score = 28.9 bits (65), Expect = 0.58
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEEEEEEEE++ E+ +E+E +E E E+ + +RR+ +
Sbjct: 10 DEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKE 53
Score = 26.3 bits (58), Expect = 5.3
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEEEEE++ E+ +E+E +E E E++ + + +++K +
Sbjct: 14 EEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEE 55
Score = 26.3 bits (58), Expect = 5.7
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E E ++EEEEEEEEE++ E+ +E+E
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDE 30
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 35.5 bits (82), Expect = 0.009
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+L E E E+E + E+E E EEEE++E++K++E KK+K+ K
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 33.2 bits (76), Expect = 0.051
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E E E E+E + E+E E EEEEKK+K++K
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKK 160
Score = 31.6 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E E+E + E+E E EEEEK+E++KKK+ +K K
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEK 167
Score = 30.8 bits (70), Expect = 0.39
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E E E E+E + E+E E +EEE+K+KK++K
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKK 161
Score = 30.5 bits (69), Expect = 0.50
Identities = 17/44 (38%), Positives = 35/44 (79%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E EEEE++E+++++E ++E++E+++++EK E K K++K K
Sbjct: 146 EAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 30.1 bits (68), Expect = 0.64
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G+G + E E E E+E + E+E E EE+E++EKKKK+ K
Sbjct: 117 GYGAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKK 165
Score = 30.1 bits (68), Expect = 0.69
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE--EEKKKKRRKNK 213
E E E+E + E+E E EEEE++E++++KE E+K+KK +K K
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEK 176
Score = 29.7 bits (67), Expect = 0.80
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E+E + E+E E EEEE++E+++++E K+E+++KK +++
Sbjct: 132 SETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 29.3 bits (66), Expect = 1.1
Identities = 16/46 (34%), Positives = 37/46 (80%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E EEEE++E+++++E ++E++E+++++E+ E + KKK++K K
Sbjct: 146 EAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 28.9 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 34/42 (80%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E E EEEE++E+++++E ++E++E+K+++EK + + +K
Sbjct: 143 VEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184
Score = 28.9 bits (65), Expect = 1.5
Identities = 17/44 (38%), Positives = 34/44 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + E+E E EEEE++E+++++E ++E+KE+++KK+K + K
Sbjct: 138 ETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPK 181
Score = 28.5 bits (64), Expect = 2.1
Identities = 16/44 (36%), Positives = 34/44 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E E EEEE++E+++++E ++E++E+++K+E+ + K K K
Sbjct: 143 VEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKK 186
Score = 26.6 bits (59), Expect = 9.3
Identities = 14/47 (29%), Positives = 33/47 (70%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ + E+E E EEEE++E+++++E ++E++EK+++++K K
Sbjct: 137 KETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 35.8 bits (83), Expect = 0.010
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++E+E+++ ++ +EEE+EE+EEE+ + + K KK K KI
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKI 66
Score = 33.5 bits (77), Expect = 0.051
Identities = 13/43 (30%), Positives = 30/43 (69%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E+E+++ ++ +EEE+EE+EEE+ + + + KK + K +
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIE 67
Score = 32.7 bits (75), Expect = 0.10
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
L+ + EE+E+ + E+EE+ E EE+ E+E E+ + +K
Sbjct: 61 ALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRK 101
Score = 32.7 bits (75), Expect = 0.10
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
W + E+EE+EEE+ + + + ++ + + EE+EK + EK++K +
Sbjct: 37 WDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 30.4 bits (69), Expect = 0.56
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ + EE+E+ + E+EE+ E EE+ E+E +K R K+
Sbjct: 63 KAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKL 102
Score = 28.9 bits (65), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K + + E+EE+ E EE+ E+E E+ K +EE
Sbjct: 69 KEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E+ + E+EE+ E EE+ E+E E+ ++ +E
Sbjct: 68 EKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQE 104
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 35.9 bits (83), Expect = 0.010
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K +EE+E E EE E E E EE+ EK
Sbjct: 140 PKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEK 178
Score = 32.8 bits (75), Expect = 0.12
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
G E + +EE+E E EE E E E EE+
Sbjct: 134 GSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQ 172
Score = 32.8 bits (75), Expect = 0.12
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E + +EE+E E EE E E E E++
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQ 172
Score = 32.8 bits (75), Expect = 0.12
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+EE+E E EE E E E EE+ +K
Sbjct: 142 TDEEKELLREVEELESRLATEPSPAPELEEQLALMEK 178
Score = 30.9 bits (70), Expect = 0.42
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+L E + +EE+E E EE E E E +++
Sbjct: 132 ELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQ 172
Score = 28.9 bits (65), Expect = 1.8
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E EE E E E EE+ EK E K
Sbjct: 148 LLREVEELESRLATEPSPAPELEEQLALMEKSYELAAK 185
Score = 28.5 bits (64), Expect = 2.7
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 150 AKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
A+ RS + + E E + +EE+E E EE E E
Sbjct: 110 AETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREVEELESRLATEPSPA 166
Score = 27.8 bits (62), Expect = 4.2
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
L E EE E E E EE+ E+ E K R +
Sbjct: 149 LREVEELESRLATEPSPAPELEEQLALMEKSYELAAKYMPRGQE 192
Score = 27.4 bits (61), Expect = 5.7
Identities = 13/42 (30%), Positives = 15/42 (35%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
L E EE E E E EE+ E+ E K R
Sbjct: 148 LLREVEELESRLATEPSPAPELEEQLALMEKSYELAAKYMPR 189
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 35.5 bits (82), Expect = 0.011
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E++ + E+E+EE EEE EEE+EE +E EKE EEK
Sbjct: 79 EDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Score = 35.1 bits (81), Expect = 0.015
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
K + E+E+EE EEE EEE+EE +E E+E EEK E +K
Sbjct: 81 KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Score = 34.7 bits (80), Expect = 0.020
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E+E+EE EEE EEE+EE +E E+E EE+ E +K
Sbjct: 81 KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Score = 34.3 bits (79), Expect = 0.028
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE +EEE+E E++E++ + E+E+EE EEE +++ +
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Score = 33.9 bits (78), Expect = 0.031
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E++E++ + E+E+EE EEE EEE+EE +E E+E ++K
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Score = 33.9 bits (78), Expect = 0.036
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+EE EEE EEE+EE +E E+E EE+ E E+E
Sbjct: 87 EDEESEEENEEEDEESSDENEKETEEKTESNVEKE 121
Score = 33.6 bits (77), Expect = 0.040
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E+E+EE EEE EEE+EE +E E+E E++ E +K
Sbjct: 82 GDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Score = 33.6 bits (77), Expect = 0.047
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ EE EEE EEE+EE +E E+E EE+ E ++E
Sbjct: 86 KEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 33.2 bits (76), Expect = 0.067
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E EE +EEE+E E++E++ + E+E EE E++ + +
Sbjct: 58 ETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Score = 32.8 bits (75), Expect = 0.073
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E E EE +EEE+E E++E++ + EKE+EE +++ +
Sbjct: 56 DQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Score = 32.8 bits (75), Expect = 0.083
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EEE EEE+EE +E E+E EE+ E EKE K
Sbjct: 90 ESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128
Score = 32.4 bits (74), Expect = 0.100
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EE +EEE+E E++E++ + E+E+EE +EE E++
Sbjct: 59 TAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Score = 32.0 bits (73), Expect = 0.17
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EEE+E E++E++ + E+E+EE EEE E+E+EE +
Sbjct: 67 EEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDE 105
Score = 31.6 bits (72), Expect = 0.18
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +EEE+E E++E++ + E+E+EE EE+ EEE ++ +N+
Sbjct: 64 EVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Score = 31.2 bits (71), Expect = 0.30
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ + E+E+EE EEE EEE+EE +E E+E +E+ E +
Sbjct: 81 KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVE 119
Score = 30.9 bits (70), Expect = 0.31
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K ++ + E+E+EE EEE EEE+EE +E E+E EE+
Sbjct: 77 DKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKT 114
Score = 30.9 bits (70), Expect = 0.32
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +++E E EE +EEE+E E++E++ E+E ++ +N+
Sbjct: 53 KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96
Score = 30.9 bits (70), Expect = 0.38
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E++E++ + E+E+EE EEE EEE+E+ +E +K+
Sbjct: 71 EAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 30.1 bits (68), Expect = 0.58
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E ++ +++E E EE +EEE+E E+KE++ +K +
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEES 91
Score = 29.7 bits (67), Expect = 0.91
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ +++E E EE +EEE+E E++E+K + EK+ + + +
Sbjct: 51 AKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Score = 27.8 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E+E ++ +++E E EE +EEE+E E+K+ K K
Sbjct: 46 ADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEK 86
Score = 27.8 bits (62), Expect = 4.1
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E+E ++ +++E E EE +EEE+E +++E+K ++++
Sbjct: 46 ADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDE 89
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 35.8 bits (83), Expect = 0.011
Identities = 16/25 (64%), Positives = 16/25 (64%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEE 189
W EEEEEEEEEEEEEE E
Sbjct: 401 RWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 34.7 bits (80), Expect = 0.027
Identities = 18/33 (54%), Positives = 19/33 (57%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
+E EEEEEEEEEEEEEEE E E
Sbjct: 399 VERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 34.7 bits (80), Expect = 0.030
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEE 192
+ EEEEEEEEEEEEEEE E
Sbjct: 401 RWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 33.9 bits (78), Expect = 0.050
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 183 EEEEEEEEEEEEEEEEEKEEE 203
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAE 423
Score = 33.9 bits (78), Expect = 0.057
Identities = 20/35 (57%), Positives = 22/35 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
L+E+E E EEEEEEEEEEEEEEE E
Sbjct: 391 LKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 33.9 bits (78), Expect = 0.058
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEE 204
EEEEEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 35.6 bits (82), Expect = 0.012
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
G++E E+ EEEE EE EE+EEEE EEE EE E
Sbjct: 69 GRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 34.4 bits (79), Expect = 0.028
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E++E E E+ EEEE EE EE+EEEE EEE
Sbjct: 65 EDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99
Score = 34.0 bits (78), Expect = 0.037
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E E E+ EEEE EE EE+EEEE E+E EE
Sbjct: 67 DEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEE 101
Score = 34.0 bits (78), Expect = 0.040
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E++E E E+ EEEE EE EE+EEE+ EEE
Sbjct: 64 GEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEE 98
Score = 33.3 bits (76), Expect = 0.079
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+G E++E E E+ EEEE EE EE+EE+E EE
Sbjct: 57 YGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEE 97
Score = 32.9 bits (75), Expect = 0.089
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E E E+ EEEE EE EE+EEEE +EE E
Sbjct: 66 DDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESE 100
Score = 32.9 bits (75), Expect = 0.11
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E+ EEEE EE EE+EEEE EEE +E E
Sbjct: 71 IEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 32.1 bits (73), Expect = 0.17
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
EEEE EE EE+EEEE EEE EE E + EE
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 32.1 bits (73), Expect = 0.18
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EEEE EE EE+EEEE EEE EE E + EE
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 31.7 bits (72), Expect = 0.23
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E+ EEEE EE EE+EEEE EEE E+ E
Sbjct: 71 IEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 35.7 bits (82), Expect = 0.012
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E EE+EEEEEEEEEEEE + E+ + RK
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRK 259
Score = 35.3 bits (81), Expect = 0.018
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E EE+EEEEEEEEEEEE + EK++ K
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRK 259
Score = 34.9 bits (80), Expect = 0.023
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E EE+EEEEEEEEEEEE + EK +K
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRK 259
Score = 33.8 bits (77), Expect = 0.047
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ E EE+EEEEEEEEEEEE + E+ R+ +
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKAS 261
Score = 33.8 bits (77), Expect = 0.051
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEE 191
+ E EE+EEEEEEEEEEEE
Sbjct: 221 SSGSDSESEEDEEEEEEEEEEEE 243
Score = 32.2 bits (73), Expect = 0.16
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE+EEEEEEEEEEEE + E+ +
Sbjct: 227 ESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKA 260
Score = 31.8 bits (72), Expect = 0.23
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEE 185
G EE+EEEEEEEEEEEE
Sbjct: 222 SGSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 35.9 bits (83), Expect = 0.012
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 153 MHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ G L + L GK+EE EE EEE+++ + ++ +KK K K
Sbjct: 827 SNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGK 885
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 36.0 bits (83), Expect = 0.013
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E+ E EE E +E EE+E E + E EE E +
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 34.4 bits (79), Expect = 0.036
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ E EE E +E EE+E E + E +E E
Sbjct: 243 NNEDSEAGREESEGSDESEEDEAEATDGEGEEGEM 277
Score = 34.0 bits (78), Expect = 0.051
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ E EE E +E EE+E E + E E+ E +
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 33.3 bits (76), Expect = 0.079
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E+ E EE E +E EE+E E + E EE E
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGE 276
Score = 32.9 bits (75), Expect = 0.12
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE E +E EE+E E + E EE E + E
Sbjct: 247 SEAGREESEGSDESEEDEAEATDGEGEEGEMDAAE 281
Score = 32.1 bits (73), Expect = 0.18
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E +E EE+E E + E EE E + E E+
Sbjct: 252 EESEGSDESEEDEAEATDGEGEEGEMDAAEASEDS 286
Score = 32.1 bits (73), Expect = 0.19
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +EE+ ++++ + E+ E EE E +E EE+E
Sbjct: 230 DADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
Score = 32.1 bits (73), Expect = 0.19
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G+ E E +E EE+E E + E EE E + E E+ E
Sbjct: 250 GREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSE 287
Score = 31.7 bits (72), Expect = 0.25
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+++ + E+ E EE E +E EE+E E + E +
Sbjct: 238 DDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
Score = 31.7 bits (72), Expect = 0.30
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E E + E EE E + E E+ E +E +++ E + R
Sbjct: 263 DEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDARPATP 307
Score = 31.7 bits (72), Expect = 0.30
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++++ + E+ E EE E +E EE+E E + E +
Sbjct: 237 DDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
Score = 31.0 bits (70), Expect = 0.50
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ +EE+ ++++ + E+ E EE E ++ EE+
Sbjct: 229 EDADEEDGDDDQPDNNEDSEAGREESEGSDESEED 263
Score = 31.0 bits (70), Expect = 0.54
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE+ +EE+ ++++ + E+ E EE E E EE
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEE 262
Score = 31.0 bits (70), Expect = 0.54
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EE+ ++++ + E+ E EE E +E E++E E
Sbjct: 232 DEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAE 266
Score = 30.2 bits (68), Expect = 0.79
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G E EE+E E + E EE E + E E+ E E +E
Sbjct: 256 GSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 29.4 bits (66), Expect = 1.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ EE+ +EE+ ++++ + E+ E EE E +
Sbjct: 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSD 258
Score = 29.0 bits (65), Expect = 1.8
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE+ +EE+ ++++ + E+ E EE + +E
Sbjct: 225 DGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDE 259
Score = 28.7 bits (64), Expect = 2.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE ++ EE+ +EE+ ++++ + E+ E EE
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREES 254
Score = 28.3 bits (63), Expect = 4.1
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++++ + E+ E EE E +E EE+E + + + +
Sbjct: 237 DDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
Score = 27.9 bits (62), Expect = 4.4
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ ++ EE+ +EE+ ++++ + E+ E E+ E
Sbjct: 221 ETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGS 257
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This is
a family that is found predominantly at the C-terminus
of Kelch-containing proteins. However, the exact
function of this region is not known.
Length = 99
Score = 33.9 bits (78), Expect = 0.013
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E EE E+EEEE+ EE +EK+ + +RR
Sbjct: 60 WELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGRRR 99
Score = 26.2 bits (58), Expect = 6.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE E EE E+EEEE+ EE K +
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDW 91
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 35.6 bits (82), Expect = 0.014
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE ++++ E+E ++ E+E +E++++ EE K+ K K
Sbjct: 89 AEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQK 132
Score = 35.6 bits (82), Expect = 0.015
Identities = 10/39 (25%), Positives = 27/39 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+++E+++ EE ++++ E+E ++ E+E +E+KK+
Sbjct: 82 KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA 120
Score = 34.8 bits (80), Expect = 0.024
Identities = 8/44 (18%), Positives = 29/44 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K E+++ EE ++++ E+E ++ E+E ++++++ ++ ++
Sbjct: 83 KKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ 126
Score = 33.6 bits (77), Expect = 0.057
Identities = 10/41 (24%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ +++E+++ EE ++++ E+E ++ E+E +E+KK+
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119
Score = 32.9 bits (75), Expect = 0.11
Identities = 10/54 (18%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 166 WGKLEEEE------EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ + ++++ EE+ +++E+++ EE ++++ E+E K+ E+++ ++ K
Sbjct: 64 YNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQK 117
Score = 32.9 bits (75), Expect = 0.11
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++ E+E ++ E+E +E++++ EE K+ K+K+
Sbjct: 95 KQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
Score = 32.9 bits (75), Expect = 0.12
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++ E+E +E++++ EE ++ ++K+ EE K
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 32.1 bits (73), Expect = 0.21
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+L++ E+E +E++++ EE ++ ++++ EE K
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAA 142
Score = 31.3 bits (71), Expect = 0.30
Identities = 9/43 (20%), Positives = 27/43 (62%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E+++ EE ++++ E+E ++ E+E +E++K+ + +
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ 126
Score = 30.5 bits (69), Expect = 0.52
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E+E +E++++ EE ++ ++++ EE K K
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
Score = 28.6 bits (64), Expect = 2.2
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---KEEEEKKKK 208
+LE+E +E++++ EE ++ ++++ EE K K K
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K E +++ E E ++ E +++ E E K E KKK
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 28.2 bits (63), Expect = 3.6
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E+E +E++++ EE ++ ++++ +E K K K
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 28.2 bits (63), Expect = 3.6
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K + E E + ++ E +++ E E +K E KKK
Sbjct: 146 KAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK 186
Score = 27.8 bits (62), Expect = 5.0
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K E E + E +++ E E +++ E ++K E K K
Sbjct: 186 KAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAK 229
Score = 27.1 bits (60), Expect = 7.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K E +++ E E + E +++ E E ++K E KKK
Sbjct: 178 KAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 34.8 bits (80), Expect = 0.014
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ E E E+ E++E+EE +EEE+EEE E+ K++E KR+K
Sbjct: 69 EAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKP 113
Score = 32.9 bits (75), Expect = 0.061
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K E E E+ E++E+EE +EEE+EEE E+ +++E +RK
Sbjct: 67 EKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRK 111
Score = 32.5 bits (74), Expect = 0.092
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E E+ E++E+EE +EEE+EEE E ++++ ++ K
Sbjct: 69 EAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKK 112
Score = 31.7 bits (72), Expect = 0.15
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+E E E E+ E++E+EE +EEE+EE+ E+ K+++ K
Sbjct: 66 KEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKR 110
Score = 31.3 bits (71), Expect = 0.24
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E+E E E E+ E++E+EE +EEE+E+E E+ K++ +
Sbjct: 65 EKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSF 108
Score = 30.6 bits (69), Expect = 0.36
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E+ E++E+EE +EEE+EEE E+ ++++ K+KK K
Sbjct: 74 EREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFK 115
Score = 30.2 bits (68), Expect = 0.54
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K+E EE E+E+E E E E+ E++E+EE ++EE+E++ + K +
Sbjct: 58 KIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQE 104
Score = 29.8 bits (67), Expect = 0.82
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ ++ E EE E+E+E E E E+ E++E+EE +EE+K++ ++
Sbjct: 55 EEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAED 99
Score = 28.3 bits (63), Expect = 2.5
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE++ E EE E+E+E E E E+ E++EKEE +++++ +
Sbjct: 54 EEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
Score = 27.9 bits (62), Expect = 2.8
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEE++ E EE E+E+E E E E+ E++E+EE ++ K +
Sbjct: 52 SKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95
Score = 27.9 bits (62), Expect = 2.9
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+EEE+E +E + +EEE++ E EE E+EKE E +++ +
Sbjct: 38 EKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQ 82
Score = 27.9 bits (62), Expect = 3.2
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K +E+EEE+E +E + +EEE++ E EE EKE+E
Sbjct: 34 KKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAG 71
Score = 27.5 bits (61), Expect = 4.7
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K +EEE++ E EE E+E+E E E E+ E++++EE +++ ++
Sbjct: 51 KSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 33.4 bits (77), Expect = 0.014
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EEE +E+ EE E+ EE E E +E EE KE+ ++ + R+ KI
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKI 84
Score = 31.1 bits (71), Expect = 0.10
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEE +E+ EE E+ EE E E +E EE +EK + +++R+K
Sbjct: 42 EEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKK 83
Score = 28.4 bits (64), Expect = 0.84
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E+ EE E+ EE E E +E EE +E+ + EE KK + R+
Sbjct: 47 EQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 27.6 bits (62), Expect = 1.8
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E +E+ EE E+ EE E E +E EE +E+ K E+++K+ + +
Sbjct: 44 ERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 34.7 bits (80), Expect = 0.017
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LE++EEEE EEEEE+ EEE EEEEEE + EE
Sbjct: 71 LELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEE 109
Score = 33.5 bits (77), Expect = 0.038
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EE E E++EEEE EEEEE+ EEE E+EEEE +
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQ 102
Score = 33.5 bits (77), Expect = 0.040
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
L+ EE E E++EEEE EEEEE+ EEE +EEEE+ +
Sbjct: 63 SLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQ 102
Score = 33.5 bits (77), Expect = 0.042
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+LE E++EEEE EEEEE+ EEE EEEEEE +
Sbjct: 70 RLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPF 106
Score = 33.2 bits (76), Expect = 0.060
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ EE E E++EEEE EEEEE+ EEE EEEE++ +R
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQR 103
Score = 32.8 bits (75), Expect = 0.069
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EE EEEEE+ EEE EEEEEE + EE+EE+
Sbjct: 78 EEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYD 118
Score = 32.4 bits (74), Expect = 0.097
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 158 LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
LS L + E E E++EEEE EEEEE+ EEE EEE+EE
Sbjct: 56 LSGVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEY 101
Score = 30.5 bits (69), Expect = 0.47
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ EE E E++EEEE EEEEE+ EE+ EEE+++ +R
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGP 105
Score = 29.7 bits (67), Expect = 0.71
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEE+ EEE EEEEEE + EEEEE+ +E
Sbjct: 82 SAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDE 119
Score = 29.7 bits (67), Expect = 0.76
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
LE + EE E E++EEEE EEEEE+ +EE E++++ +
Sbjct: 60 LESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQR 103
Score = 29.7 bits (67), Expect = 0.87
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE+ EEE EEEEEE + EEEEE+ + +E
Sbjct: 85 EEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDEL 120
Score = 28.5 bits (64), Expect = 1.6
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE+ EEE EEEEEE + EEEEE+ + +E ++R
Sbjct: 87 EEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEER 126
Score = 27.0 bits (60), Expect = 6.0
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EEE EEEEEE + EEEEE+ + +E EE+++ R
Sbjct: 91 EEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELRE 131
Score = 26.6 bits (59), Expect = 7.3
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEE EEEEEE + EEEEE+ + +E E++++ R+
Sbjct: 90 PEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELRE 131
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 35.6 bits (83), Expect = 0.018
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G+G L+ + E ++ +EE E+ E ++EEE+E+ +E E KK + K K
Sbjct: 155 GFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKK 203
Score = 31.7 bits (73), Expect = 0.30
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ +EE E+ E ++EEE+E+ +E E +K E EKKK+ +
Sbjct: 166 DDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDP 210
Score = 31.0 bits (71), Expect = 0.51
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++ +EE E+ E ++EEE+E+ +E E ++ E +KK++
Sbjct: 164 EIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKN 207
Score = 30.6 bits (70), Expect = 0.61
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ +EE E+ E ++EEE+E+ +E E K+ E +KKK+ KN
Sbjct: 164 EIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNF 208
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 34.9 bits (81), Expect = 0.020
Identities = 12/35 (34%), Positives = 12/35 (34%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E E E EE EEE EEE
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEE 60
Score = 33.0 bits (76), Expect = 0.075
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ E E E EE EEE EEE E
Sbjct: 27 PPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEA 63
Score = 32.6 bits (75), Expect = 0.11
Identities = 11/36 (30%), Positives = 12/36 (33%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E E E E EE EEE EE
Sbjct: 24 FDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEE 59
Score = 30.7 bits (70), Expect = 0.45
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E E E EE EEE E+E E
Sbjct: 29 EPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEA 63
Score = 29.5 bits (67), Expect = 0.93
Identities = 9/29 (31%), Positives = 9/29 (31%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E E E EE EEE
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAA 54
Score = 29.5 bits (67), Expect = 1.1
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E EE EEE EEE E +++ +
Sbjct: 33 PEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHE 70
Score = 28.0 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E EE EEE EEE E ++ EE
Sbjct: 38 PPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEE 71
Score = 26.8 bits (60), Expect = 7.7
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E EE EEE EEE E ++ EE
Sbjct: 37 APPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEE 71
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 35.2 bits (82), Expect = 0.020
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEEE +EE + E EEE + E EE E +EE + +
Sbjct: 38 VEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPA 82
Score = 33.7 bits (78), Expect = 0.065
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE +EE + E EEE + E EE E E+E + + +
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAE 83
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 34.2 bits (79), Expect = 0.022
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE E+ EEEE EEEE EEE E EEE++E E E + + K+K
Sbjct: 13 AEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDK 58
Score = 32.7 bits (75), Expect = 0.074
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + EE EE E+ EEEE EEEE EEE E E+E++E + + +
Sbjct: 10 EPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLE 53
Score = 32.7 bits (75), Expect = 0.092
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE + EE EE E+ EEEE EEEE EEE E EEE+++ + ++
Sbjct: 8 TEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQL 52
Score = 32.3 bits (74), Expect = 0.096
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K EE + EE EE E+ EEEE EEEE EEE E +EE+++ +
Sbjct: 7 KTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 32.3 bits (74), Expect = 0.098
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EE EE E+ EEEE EEEE EEE E EEE++E + + + +
Sbjct: 12 DAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEEL 55
Score = 31.5 bits (72), Expect = 0.19
Identities = 22/39 (56%), Positives = 26/39 (66%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EEEE EEEE EEE E EEE++E E E + EE + K R
Sbjct: 23 EEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Score = 30.4 bits (69), Expect = 0.46
Identities = 23/40 (57%), Positives = 26/40 (65%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEEE EEEE EEE E EEE++E E E + EE K K R
Sbjct: 23 EEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62
Score = 30.4 bits (69), Expect = 0.46
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E++ EE + EE EE E+ EEEE EEEE +EE E ++++++
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIA 46
Score = 30.0 bits (68), Expect = 0.58
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K ++ EE + EE EE E+ EEEE EEEE EEE E EE++++
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQE 44
Score = 29.2 bits (66), Expect = 1.0
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++E++ EE + EE EE E+ EEEE EEE+ EEE + + + +I
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEI 45
Score = 29.2 bits (66), Expect = 1.2
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E++ EE + EE EE E+ EEEE EEEE E+E E +++++ +
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 28.8 bits (65), Expect = 1.7
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE EEEE EEE E EEE++E E E + EE +++ + +
Sbjct: 25 EEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQ 63
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 34.3 bits (79), Expect = 0.022
Identities = 7/47 (14%), Positives = 35/47 (74%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++++ ++++++++++++++++++ E+++EKE E+K + K+
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Score = 31.6 bits (72), Expect = 0.16
Identities = 8/48 (16%), Positives = 34/48 (70%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
W K + ++++++++++++++++++ E+++E+E E + E+ K +
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 31.2 bits (71), Expect = 0.28
Identities = 6/44 (13%), Positives = 36/44 (81%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+++ + ++++ ++++++++++++++++ + E+K +K ++K+
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 30.8 bits (70), Expect = 0.29
Identities = 4/46 (8%), Positives = 35/46 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K ++++ ++++++++++++++++++ E+++E++ E++ + +
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 30.8 bits (70), Expect = 0.31
Identities = 5/46 (10%), Positives = 34/46 (73%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K + ++++ ++++++++++++++++++ E+++++E E K +
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLT 126
Score = 30.4 bits (69), Expect = 0.42
Identities = 5/42 (11%), Positives = 35/42 (83%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ EE+++ + ++++ +++++++++++++++++K E++ +K+
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 30.0 bits (68), Expect = 0.61
Identities = 7/47 (14%), Positives = 34/47 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K ++++++++++++++++++ E+++E+E E++ E+ K + +
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Score = 29.3 bits (66), Expect = 1.2
Identities = 5/50 (10%), Positives = 36/50 (72%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
W +++ ++++++++++++++++++ E+++E+E E++ + + ++
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSET 132
Score = 28.5 bits (64), Expect = 2.0
Identities = 8/44 (18%), Positives = 28/44 (63%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K +++++++++++++ E+++E+E E++ E+ K E
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 27.7 bits (62), Expect = 3.5
Identities = 7/45 (15%), Positives = 27/45 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++++++++++ E+++E+E E++ E+ + E K +
Sbjct: 99 KDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRK 143
Score = 27.3 bits (61), Expect = 4.2
Identities = 12/45 (26%), Positives = 33/45 (73%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
K +E EE E+ ++E EE+++ + ++++ +++K++++ KK +K+
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKD 107
Score = 27.0 bits (60), Expect = 5.5
Identities = 14/44 (31%), Positives = 32/44 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E +++++E EE E+ ++E EE+++ + ++++ KKK+ K+K
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDK 99
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 35.0 bits (80), Expect = 0.022
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE EE E + E++ + + EE ++EE+E E EE++K +R +
Sbjct: 123 REEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSL 167
Score = 34.2 bits (78), Expect = 0.042
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+EEEE+EE EE EE EE E + E++ + ++ EE +K+ ++
Sbjct: 110 TVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKE 153
Score = 33.1 bits (75), Expect = 0.11
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LEEEE+ ++EE + + EEEE+ +EE E+ E +KR+K
Sbjct: 230 LEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQK 272
Score = 31.9 bits (72), Expect = 0.24
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LE EE +++ EE + EEEE+ ++EE + K EE++K+R K +I
Sbjct: 214 LELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEI 259
Score = 31.5 bits (71), Expect = 0.28
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E EE E + E++ + + EE ++EE+E + EEE+K KR
Sbjct: 122 EREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGS 166
Score = 31.2 bits (70), Expect = 0.35
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEKEEEEKKKKRRKNK 213
G E EEEE+EE EE EE EE E + E++ + + E+ +K K
Sbjct: 105 GAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEP 154
Score = 31.2 bits (70), Expect = 0.42
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+ E E EEEE+EE EE EE EE E + E+K R
Sbjct: 102 EDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWR 142
Score = 28.8 bits (64), Expect = 2.2
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 151 KEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
KE +SL +++E+ E E EEEE+EE EE EE EE E + ++K
Sbjct: 82 KEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQK 138
Score = 27.7 bits (61), Expect = 5.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E++ + + EE ++EE+E E EEEE+ + EE
Sbjct: 135 SEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEE 169
Score = 27.3 bits (60), Expect = 6.1
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
++++E E EE +++ EE + EEEE+ +++EE +K R
Sbjct: 207 QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSR 247
Score = 27.3 bits (60), Expect = 7.9
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
K +++E E EE +++ EE + EEEE+ K+EE +K R
Sbjct: 206 KQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSR 247
Score = 26.9 bits (59), Expect = 9.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
K E++ + + EE ++EE+E E EEEE+ + EE
Sbjct: 134 KSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEE 169
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 34.6 bits (79), Expect = 0.023
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
L + +E +E + EE++ +EE+EEEE EEE K+EE
Sbjct: 203 LSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 34.2 bits (78), Expect = 0.027
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
KL+E +E + EE++ +EE+EEEE EEE ++E+ +
Sbjct: 202 LLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
Score = 34.2 bits (78), Expect = 0.031
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+E + EE++ +EE+EEEE EEE ++EE + ++
Sbjct: 211 QEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 33.5 bits (76), Expect = 0.048
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
L+E + EE++ +EE+EEEE EEE ++EE + ++
Sbjct: 210 LQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 33.5 bits (76), Expect = 0.049
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+L + +E +E + EE++ +EE+EEEE EEE ++EE
Sbjct: 197 PKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 33.5 bits (76), Expect = 0.052
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
K EE++ +EE+EEEE EEE ++EE + ++
Sbjct: 214 KTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 32.7 bits (74), Expect = 0.086
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E + EE++ +EE+EEEE EEE ++EE + ++
Sbjct: 211 QEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 32.3 bits (73), Expect = 0.13
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+E +E + EE++ +EE+EEEE EEE ++EE +
Sbjct: 207 QEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
Score = 30.8 bits (69), Expect = 0.38
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E+ + +E +E + EE++ +EE+EEEE EEE K+++
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 30.8 bits (69), Expect = 0.45
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K ++E+ + +E +E + EE++ +EE+EEE+ EEE K++
Sbjct: 196 KPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQE 236
Score = 29.2 bits (65), Expect = 1.4
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 145 SSPNIAKEMHVGHLSRSL-CHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEE 194
+P +E + L L H + + +EE+EEEE EEE ++EE + ++
Sbjct: 193 KAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 26.9 bits (59), Expect = 7.8
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E+ + +E +E + EE++ +EE+E+EE E++ K+
Sbjct: 199 QEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQ 235
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 34.6 bits (80), Expect = 0.024
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EE EE+EE E E+ E EE EE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAAN 244
Score = 33.9 bits (78), Expect = 0.038
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
W EE EE+EE E E+ E EE E+
Sbjct: 204 WRDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 33.5 bits (77), Expect = 0.053
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE EE+EE E E+ E EE +E
Sbjct: 207 PEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
Score = 31.6 bits (72), Expect = 0.23
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ +EE E E+ E EE EE E
Sbjct: 211 EEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 30.8 bits (70), Expect = 0.38
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+EE E E+ E EE EE E
Sbjct: 210 AEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 29.6 bits (67), Expect = 0.98
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EE EE+EE E E+ + EE ++ N
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 33.8 bits (78), Expect = 0.024
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
E+E +EEEE E++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 33.8 bits (78), Expect = 0.024
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
E+E +EEEE E++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 32.3 bits (74), Expect = 0.089
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E+E +EEEE E++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 31.5 bits (72), Expect = 0.15
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E+E +EEEE E++ ++ +EE EEEE E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 31.1 bits (71), Expect = 0.20
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+E +EEEE E++ ++ +EE EEE++ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 34.9 bits (81), Expect = 0.025
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
LEEE+ +EE EE + + + + EK EEE+ +++R
Sbjct: 176 SLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
Score = 32.9 bits (76), Expect = 0.087
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
KL EEE+ +EE EE + + + ++E+ E+++ RRK
Sbjct: 174 KLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRK 217
Score = 32.9 bits (76), Expect = 0.12
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEE+ +EE EE + + + + ++ EE++ +R++
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
Score = 31.4 bits (72), Expect = 0.35
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEE+ +EE EE + + + + E+ ++++ R+ +
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRF 219
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 34.7 bits (79), Expect = 0.027
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
GK +E+E +E+EEEEEEEEEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 34.3 bits (78), Expect = 0.035
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
G ++ +E+E +E+EEEEEEEEEEE E EE ++
Sbjct: 123 GNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 33.9 bits (77), Expect = 0.040
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
++ +E+E +E+EEEEEEEEEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 33.9 bits (77), Expect = 0.041
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++ +E+E +E+EEEEEEEEEEE E EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 33.9 bits (77), Expect = 0.044
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 163 CHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
++ +E+E +E+EEEEEEEEEEE E EE E+
Sbjct: 120 KKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 32.7 bits (74), Expect = 0.11
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
++ +E+E +E+EEEEEEEEEEE E E+ E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 32.7 bits (74), Expect = 0.11
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ +E+E +E+EEEEEEEEEEE E +E E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 32.0 bits (72), Expect = 0.19
Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 25/60 (41%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEE-------------------------EEEEEEEKEEEE 204
E +E+EEEEEEEEEEE E EE E EE EEE E E
Sbjct: 134 ESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESVTEAE 193
Score = 32.0 bits (72), Expect = 0.19
Identities = 24/59 (40%), Positives = 25/59 (42%), Gaps = 25/59 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEE-------------------------EEEEEEEEEEKEEE 203
E+EEEEEEEEEEE E EE E EE EEE E E E
Sbjct: 137 EDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESVTEAEAE 195
Score = 31.2 bits (70), Expect = 0.31
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++ +E+E +E+EEEEEEEEEEE E EE ++
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 30.8 bits (69), Expect = 0.43
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++ +E+E +E+EEEEEEEEEEE + EE ++
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 30.8 bits (69), Expect = 0.49
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE + + EEE EEE EEE E+ + E+EE
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGNEDEE 85
Score = 30.4 bits (68), Expect = 0.58
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
G + EEE EEE EEE E+ + E+EE E E
Sbjct: 55 GDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 30.0 bits (67), Expect = 0.78
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ EEE EEE EEE E+ + E+EE E E
Sbjct: 58 DSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 30.0 bits (67), Expect = 0.81
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
G G EEE EEE EEE E+ + E+EE E E
Sbjct: 55 GDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 29.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + + EEE EEE EEE E+ + E EE E
Sbjct: 53 ENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAE 87
Score = 29.3 bits (65), Expect = 1.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE + + EEE EEE EEE E+ + ++EE
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGNEDEE 85
Score = 28.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE + + EEE EEE EEE E+ + E+E+
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGNEDEE 85
Score = 28.5 bits (63), Expect = 2.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ EEE EEE EEE E+ + E+EE + E
Sbjct: 58 DSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 28.1 bits (62), Expect = 3.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ EE + + EEE EEE EEE E+ + E ++ +N
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 27.4 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ EE + + EEE EEE EEE E+ E+++
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEE 85
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 32.9 bits (75), Expect = 0.028
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ K E EE EE +EEEEEEEEEE+E E E + EE E++
Sbjct: 49 SAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEE 91
Score = 31.4 bits (71), Expect = 0.10
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 62 ENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLED 97
Score = 31.0 bits (70), Expect = 0.11
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EE +EEEEEEEEEE+E E E ++EE EE+ E+ +
Sbjct: 61 EENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLED 97
Score = 30.6 bits (69), Expect = 0.16
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE EE +EEEEEEEEEE+E E E ++EE EEE
Sbjct: 58 EESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEI 92
Score = 30.6 bits (69), Expect = 0.18
Identities = 21/35 (60%), Positives = 26/35 (74%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE +EEEEEEEEEE+E E E ++EE +EE E
Sbjct: 59 ESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIE 93
Score = 30.2 bits (68), Expect = 0.21
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE +EEEEEEEEEE+E E E ++EE E+E E+
Sbjct: 58 EESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIED 94
Score = 29.8 bits (67), Expect = 0.34
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+EEEEEEEEEE+E E E ++EE EEE ++ E
Sbjct: 62 ENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 29.5 bits (66), Expect = 0.40
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E EE EE +EEEEEEEEEE+E E E +EE +++
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEE 91
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 33.2 bits (77), Expect = 0.030
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+L EEEE++E E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 32.8 bits (76), Expect = 0.035
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E EEEE++E E EEE EE E E EEE EE K
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 32.0 bits (74), Expect = 0.068
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E EEEE++E E EEE EE E E +EE E+ K
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 31.7 bits (73), Expect = 0.095
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E EEEE++E E EEE EE E E E+E EE K
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 30.5 bits (70), Expect = 0.24
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E EEEE++E E EEE EE E E EE+ EE K
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 30.1 bits (69), Expect = 0.30
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E EEEE++E E EEE EE E E EEE +E +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 26.7 bits (60), Expect = 5.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EEEE++E E EEE +E E + ++ + +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELL 34
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 34.7 bits (79), Expect = 0.031
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+++EE E E +EE + + +E EE++E++E ++ R ++
Sbjct: 295 EQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTEL 338
Score = 34.3 bits (78), Expect = 0.041
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE E E +EE + + +E EE+EE++E EE E+ + +++
Sbjct: 299 EEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADEL 343
Score = 29.7 bits (66), Expect = 1.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ +E EE+EE++E EE E E +E E EK + ++ ++
Sbjct: 313 SDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQM 357
Score = 27.7 bits (61), Expect = 4.7
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEE---EEEKEEEEKKKKRRK 211
+ + +E EE+EE++E EE E E +E E E+ +++R+
Sbjct: 311 VQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRR 355
Score = 27.0 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E EE+EE++E EE E E +E E E+ ++K+R+
Sbjct: 316 PDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMES 359
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 32.9 bits (75), Expect = 0.032
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E ++EE E+E E +EEEEK+KK++KNK
Sbjct: 75 EATFMEIQKEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
Score = 31.8 bits (72), Expect = 0.086
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+E E ++EE E+E E EE+EE+ KKKK+ K
Sbjct: 74 MEATFMEIQKEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 32.6 bits (75), Expect = 0.032
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
G+L E EE+E E EEE++++E+EEEE E E+++
Sbjct: 16 GELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 34.2 bits (79), Expect = 0.033
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 160 RSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
RS+ + L E +EEE EE+EE EE E KEE +
Sbjct: 207 RSIALIYWLLARAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.9 bits (68), Expect = 0.70
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 158 LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEE 194
L+R++ G G +EEE EE+EE EE E +EE E
Sbjct: 216 LARAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 33.9 bits (77), Expect = 0.033
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K +E EE EE E E EE+ +E E++EE+E+E EE+
Sbjct: 130 KARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 32.0 bits (72), Expect = 0.14
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ E EE EE E E EE+ +E E++EE+E E+EE+
Sbjct: 131 ARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 31.6 bits (71), Expect = 0.18
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
W + EE+ +E E++EE+E E EE+ EE+ ++ E E
Sbjct: 144 WERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE 179
Score = 31.6 bits (71), Expect = 0.20
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+LEE E E EE+ +E E++EE+E E EE+ EE+
Sbjct: 137 ELEERMEWERREEKIDEREDQEEQEREREEQTIEEQ 172
Score = 31.6 bits (71), Expect = 0.21
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +E+ E+ +E EE EE E E EE+ +E+E++E++++ R+ +
Sbjct: 123 IRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 31.6 bits (71), Expect = 0.21
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++E+ +E EE EE E E EE+ +E E++E++E E++++
Sbjct: 127 QIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 31.2 bits (70), Expect = 0.28
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E E EE+ +E E++EE+E E EE+ EE+ ++ E
Sbjct: 141 RMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSE 177
Score = 30.8 bits (69), Expect = 0.32
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+ E+ +E EE EE E E EE+ +E +++EE++++R + I
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTI 169
Score = 30.4 bits (68), Expect = 0.43
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E EE E E EE+ +E E++EE+E E EE+ EE+
Sbjct: 137 ELEERMEWERREEKIDEREDQEEQEREREEQTIEEQ 172
Score = 30.0 bits (67), Expect = 0.63
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE EE E E EE+ +E E++EE+E E E++ E++ +++I
Sbjct: 136 EELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEI 180
Score = 30.0 bits (67), Expect = 0.68
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE+E E EE+ EE+ ++ E E E++E E E ++ K ++
Sbjct: 158 EEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 29.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++EE+E E EE+ EE+ ++ E E E++E E E K K
Sbjct: 156 DQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 33.2 bits (76), Expect = 0.034
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 167 GKLEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K +EE+E EE EE + + EE E+EEEE+ + ++KK K N I
Sbjct: 61 YKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKKSKGGYNAI 113
Score = 32.8 bits (75), Expect = 0.038
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 169 LEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEEEKEEEEKKKK 208
+ +EE+E EE EE + EE E+EEEEK E +KKK
Sbjct: 59 RPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKK 105
Score = 29.7 bits (67), Expect = 0.52
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 172 EEEEEEEEEEEEEEEEEEEE------EEEEEEEEKEEEEKKKKRRKNK 213
+ +EE+E EE EE + + EE EKEEEEK++ +K K
Sbjct: 58 RRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKK 105
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 34.6 bits (79), Expect = 0.035
Identities = 11/59 (18%), Positives = 29/59 (49%)
Query: 156 GHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ + +G L E E E E + + ++E+++ EE++ + +++ K +I
Sbjct: 82 DNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERI 140
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 34.0 bits (78), Expect = 0.039
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E++++ EEEE + E+ + EE E E E
Sbjct: 234 EDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Score = 33.2 bits (76), Expect = 0.075
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+ E+E++ +E+E++++ EEEE + E+ +
Sbjct: 221 SEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDA 256
Score = 32.9 bits (75), Expect = 0.096
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE +E E + E+ E+E++ +E+E++++ EEEE
Sbjct: 208 MAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEE 243
Score = 32.9 bits (75), Expect = 0.10
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E++ +E+E++++ EEEE + E+ + EE +
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESG 264
Score = 32.5 bits (74), Expect = 0.11
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E E + E+ E+E++ +E+E++++ EEEE + +
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSE 252
Score = 32.5 bits (74), Expect = 0.13
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E++++ EEEE + E+ + EE E E E
Sbjct: 233 DEDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Score = 32.5 bits (74), Expect = 0.14
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE +E E + E+ E+E++ +E+E++++ +EEE
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEES 244
Score = 32.5 bits (74), Expect = 0.14
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
G E + E+ E+E++ +E+E++++ EEEE + +
Sbjct: 213 GDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSE 252
Score = 32.1 bits (73), Expect = 0.16
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+L +E E + E+ E+E++ +E+E++++ EEE+
Sbjct: 211 ELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSS 247
Score = 32.1 bits (73), Expect = 0.19
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ E+ E+E++ +E+E++++ EEEE + E+
Sbjct: 220 DSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDA 256
Score = 31.7 bits (72), Expect = 0.22
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+E++++ EEEE + E+ + EE E E
Sbjct: 232 EDEDDDQGEEEESGSSDSLSEDSDASSEEMESGE 265
Score = 30.9 bits (70), Expect = 0.45
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E +E E + E+ E+E++ +E+E++++ E+EE
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEES 244
Score = 29.0 bits (65), Expect = 1.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+++ EEEE + E+ + EE E E E E
Sbjct: 236 DDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAE 270
Score = 27.9 bits (62), Expect = 3.8
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L + EE +E E + E+ E+E++ +E++++++
Sbjct: 203 LSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQ 238
Score = 27.1 bits (60), Expect = 6.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE + E+ + EE E E E E ++
Sbjct: 241 EEESGSSDSLSEDSDASSEEMESGEMEAAEASADD 275
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 32.8 bits (75), Expect = 0.039
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
E E +E EEEE+EEE EEE +++
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 32.8 bits (75), Expect = 0.039
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
E E +E EEEE+EEE EEE +++
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 31.6 bits (72), Expect = 0.084
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E E +E EEEE+EEE EEE ++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 31.6 bits (72), Expect = 0.088
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
E E +E EEEE+EEE EEE +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESD 100
Score = 31.6 bits (72), Expect = 0.092
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E +E EEEE+EEE +EE +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESD 100
Score = 31.6 bits (72), Expect = 0.10
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 30.8 bits (70), Expect = 0.20
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E +E EEEE+EEE EE+ +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 27.8 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEE 189
+E EEEE+EEE EEE +++
Sbjct: 80 AAEADEAEEEEKEEEAEEESDDD 102
Score = 26.6 bits (59), Expect = 4.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E +E EEEEKEEE +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAE 96
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 34.1 bits (79), Expect = 0.039
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E +E+E EE + E E+E+ E+ E +E + +++RRK
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRK 302
Score = 32.6 bits (75), Expect = 0.13
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E +E+E EE + E E+E+ E+ E+ EE + + K
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 30.7 bits (70), Expect = 0.51
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+E+E EE + E E+E+ E+ E EE + EE +K
Sbjct: 264 HPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRK 302
Score = 30.7 bits (70), Expect = 0.63
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 160 RSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
R +G +E+E EE + E E+E+ E+ E EE EE++K
Sbjct: 255 RIEYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRK 302
Score = 28.4 bits (64), Expect = 3.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E+E EE + E E+E+ E+ E EE + E+++K
Sbjct: 264 HPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 27.6 bits (62), Expect = 5.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
K EE + E E+E+ E+ E EE + EE+ +
Sbjct: 267 EKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 33.9 bits (78), Expect = 0.040
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+++EEE+E+E E+E++ +E E +E KKK KN
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKN 53
Score = 33.9 bits (78), Expect = 0.042
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
KL +++EEE+E+E E+E++ +E E +E KKK
Sbjct: 9 SKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKK 49
Score = 31.2 bits (71), Expect = 0.30
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++EEE+E+E E+E++ +E E E K++ K
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGK 52
Score = 30.4 bits (69), Expect = 0.54
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++EEE+E+E E+E++ +E + +E +K
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIG 51
Score = 26.9 bits (60), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE+E E EE EE +++E KEEE
Sbjct: 65 AREEKEAELREELREEFLKKQEAVKEEE 92
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.9 bits (78), Expect = 0.042
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E+E+E E E+ +++EE E ++++E EE + +K+
Sbjct: 75 EDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 33.2 bits (76), Expect = 0.069
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E+E+E E E+ +++EE E +++KE EE K ++K
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 30.9 bits (70), Expect = 0.36
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E+E+E E E+ +++EE E ++++E +E + +KK
Sbjct: 75 EDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 29.3 bits (66), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ E+E+E E E+ ++KEE E KKK+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEME 105
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 32.7 bits (75), Expect = 0.043
Identities = 9/37 (24%), Positives = 27/37 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K + +++ +++ +++ +EE+ +EE++E++E+EE
Sbjct: 93 KFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 32.7 bits (75), Expect = 0.045
Identities = 9/37 (24%), Positives = 25/37 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K + +++ +++ +++ +EE+ +EE++E EE+E
Sbjct: 92 KKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Score = 30.0 bits (68), Expect = 0.39
Identities = 7/37 (18%), Positives = 26/37 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K + + +++ +++ +++ +EE+ +EE++++EE+
Sbjct: 91 KKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEED 127
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 34.4 bits (79), Expect = 0.043
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 162 LCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
L G + +E E E ++ E+++EE + EE+ K++ +KK++R+
Sbjct: 145 LLGGLADSDNKEAPETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRK 193
Score = 32.0 bits (73), Expect = 0.24
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G L + + +E E E ++ E+++EE + EE ++K KK+R+ K
Sbjct: 147 GGLADSDNKEAPETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRK 193
Score = 28.2 bits (63), Expect = 4.3
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E ++ E+++EE + EE+ ++K KKK++RK +
Sbjct: 156 EAPETGREGDDGEDDDEEGSDGEEDGAKKK---AKKKRQRKPE 195
Score = 27.8 bits (62), Expect = 4.5
Identities = 10/43 (23%), Positives = 28/43 (65%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E E ++ E+++EE + EE+ +K+ ++K++++ ++ +
Sbjct: 156 EAPETGREGDDGEDDDEEGSDGEEDGAKKKAKKKRQRKPESTL 198
Score = 27.8 bits (62), Expect = 5.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 149 IAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
AK++ V L +++ W ++E E + E EEEEE E EEE
Sbjct: 620 TAKKVDVKKLKQNM---WSLIQERLESTADFESIPPEEEEESESEEE 663
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 34.0 bits (79), Expect = 0.044
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
+++ EEE +E+ E +E EE+E++ E+ E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.076
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ EEE +E+ E +E EE+E++ EK E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 0.23
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ EEE +E+ E +E EE+E++ ++ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.3 bits (72), Expect = 0.36
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEE +E+ E +E EE+E+K E+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 31.3 bits (72), Expect = 0.41
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ EEE +E+ E +E EE++++ EK
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 30.9 bits (71), Expect = 0.45
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.9 bits (71), Expect = 0.53
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ EEE +E+ E +E EEKE++ +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 30.5 bits (70), Expect = 0.75
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EEE +E+ E KE EEK+KK K +I
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Score = 30.2 bits (69), Expect = 0.79
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ EEE +E+ E +E EE+EK+ E+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.4 bits (67), Expect = 1.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EEE +E+ E +E +E+E+K +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEK 540
Score = 29.4 bits (67), Expect = 1.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EEE +E+ E +E E++E++ +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 28.2 bits (64), Expect = 3.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EEE +E+ E +E EE+EKK ++ + I
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITI 545
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 34.4 bits (79), Expect = 0.044
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEE+EEE E + +++E E+E E+EE
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEE 44
Score = 33.2 bits (76), Expect = 0.087
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE+EEE E + +++E E+E+E EE+++
Sbjct: 12 EEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDE 47
Score = 33.2 bits (76), Expect = 0.10
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE+ + EEE+EEE E + + +E
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVP 35
Score = 33.2 bits (76), Expect = 0.10
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EEE+EEE E + +++E E+E+++EE+ +
Sbjct: 11 EEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDE 47
Score = 33.2 bits (76), Expect = 0.11
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ +++E E+E+E+EE++EE E K E K++K R
Sbjct: 24 SAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKAR 64
Score = 32.1 bits (73), Expect = 0.22
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + EEE+EEE E + +++E E+E+
Sbjct: 5 VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDED 40
Score = 31.7 bits (72), Expect = 0.30
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EEE+EEE E + +++E ++E+E
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDE 41
Score = 30.9 bits (70), Expect = 0.55
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ + +++E E+E+E+EE++EE E + E +++K R K
Sbjct: 22 ARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLK 66
Score = 30.5 bits (69), Expect = 0.67
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+ + EEE+EEE E + ++++ E
Sbjct: 3 EQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAED 38
Score = 27.8 bits (62), Expect = 5.8
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ + ++ + ++ + E EE + EE+EE+E+
Sbjct: 781 RYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQ 818
Score = 27.1 bits (60), Expect = 9.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ + ++ + E EE + EE+EE+E+ EE RR
Sbjct: 786 AHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEEGFSTWSRR 830
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 34.3 bits (79), Expect = 0.044
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 168 KLEEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L E +E + E+ E ++ EE EE E+ + KKK+RK K
Sbjct: 385 QLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKK 435
Score = 32.0 bits (73), Expect = 0.21
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + E+ E ++ EE EE EE + +++++KKK K
Sbjct: 395 YYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 30.4 bits (69), Expect = 0.62
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 17/61 (27%)
Query: 168 KLEEEEEEEEEEEEEEEEEEE-----------------EEEEEEEEEEEKEEEEKKKKRR 210
KL+ + + + E +E EE EE EE + KKKKR+
Sbjct: 374 KLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRK 433
Query: 211 K 211
K
Sbjct: 434 K 434
Score = 28.1 bits (63), Expect = 3.4
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+ E ++ EE EE EE + ++++++++E +K R
Sbjct: 403 LEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 28.1 bits (63), Expect = 4.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E+ E ++ EE EE EE + ++++ K++E +K R
Sbjct: 401 TALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 27.4 bits (61), Expect = 6.6
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+L E E++ E+E ++ E + E++E+E EE EK EE ++K
Sbjct: 282 QLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 33.2 bits (76), Expect = 0.044
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE E+E++E +E EE+E + +KE++EKK+K+ K+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKL 130
Score = 32.8 bits (75), Expect = 0.066
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE E+E++E +E EE+E + ++E++E+KE++ +K +K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 30.9 bits (70), Expect = 0.31
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L EE E+E++E +E EE+E + ++E++EK+E++ +K K K
Sbjct: 90 LFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 30.1 bits (68), Expect = 0.47
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E+E++E +E EE+E + ++E++E++EK+ EK K++ K
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKT 138
Score = 26.3 bits (58), Expect = 9.3
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K ++E +E EE+E + ++E++E++E++ EK ++K K KN
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNT 142
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 32.5 bits (74), Expect = 0.045
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEE 196
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.5 bits (74), Expect = 0.045
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEE 197
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.5 bits (74), Expect = 0.045
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEE 198
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.5 bits (74), Expect = 0.045
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEE 199
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.1 bits (73), Expect = 0.062
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE+ EE+EEE+++EEE+E+EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.3 bits (71), Expect = 0.12
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE+ EE+EEE+++EEE+EE+EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.16
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEE 202
EE+ EE+EEE+++EEE+EEE+EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.5 bits (69), Expect = 0.20
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKE 201
EE+ EE+EEE+++EEE+EEEE+E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.0 bits (65), Expect = 0.79
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEE 190
+ + EE+EEE+++EEE+EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 26.7 bits (59), Expect = 4.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKKK 207
EE+ EE+EEE+K+EEEK++
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEE 93
Score = 25.9 bits (57), Expect = 8.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKK 206
EE+ EE+EEE++KEEE+++
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEE 93
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 33.8 bits (78), Expect = 0.046
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
K+EE+ EEEEEEE E EEEEEEE+EEE++E+ +K K
Sbjct: 15 KVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITE 57
Score = 32.6 bits (75), Expect = 0.10
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+ EEEEEEE E EEEEEEE+E+E++EK K KI
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKI 55
Score = 31.5 bits (72), Expect = 0.28
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+ EEEEEEE E EEEEEEE+EEE+KE+ K + +I
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEI 58
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 33.3 bits (77), Expect = 0.048
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EEE+EE E+ E E + E E+ EEEE++ EEK+
Sbjct: 133 EEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
Score = 32.6 bits (75), Expect = 0.088
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEEKEEEEKKKKRRKN 212
KLEEE+EE E+ E E + E E EEE + EEK ++ +K
Sbjct: 129 IKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQ 178
Score = 26.8 bits (60), Expect = 7.1
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 169 LEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LE+ E E + E E EEEE + EE+ +E +K+ ++ K+++
Sbjct: 139 LEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQL 186
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 34.3 bits (78), Expect = 0.050
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++ EE++++ EE ++ EE+E++ E +KE EE KK K
Sbjct: 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Score = 34.0 bits (77), Expect = 0.055
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE ++ EE++++ EE ++ EE+E++ E K+E E+ KK
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 33.6 bits (76), Expect = 0.087
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ EEE + + EE ++ EE++++ EE +K EE++KK K
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695
Score = 33.2 bits (75), Expect = 0.10
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 168 KLEEEEEEEEEEEEEEEEEE----EEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K E EE+++ EE ++ EEE EE ++E EE+++K EE KK + K KI
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Score = 32.8 bits (74), Expect = 0.13
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L+++E EE+++ EE ++ EEE + + EE +K EE+KKK K
Sbjct: 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Score = 32.8 bits (74), Expect = 0.14
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ ++ EE++++ EE ++ EE+E++ E +++ EE KK + K K
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
Score = 32.8 bits (74), Expect = 0.14
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE ++ EE++++ EE ++ EE+E++ E KK+ K
Sbjct: 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
Score = 32.8 bits (74), Expect = 0.16
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K EE++++ EE ++ EE+E++ E ++E EE ++ E+ KK+ +
Sbjct: 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
Score = 32.4 bits (73), Expect = 0.20
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L++ EEE + + EE ++ EE++++ EE ++ EE+EKK K
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
Score = 32.0 bits (72), Expect = 0.24
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ EE+E++ E ++E EE ++ EE ++KE EEKKK K
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 31.3 bits (70), Expect = 0.46
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEKEEEEKKKKRRKNKI 214
K EE+E++ E ++E EE ++ EE +E EE+K+ EE KK +NKI
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Score = 30.9 bits (69), Expect = 0.54
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++++ EE ++ EE+E++ E ++E EE +K EE KKK+ + K
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 30.9 bits (69), Expect = 0.64
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K EE ++ EE + + EE ++ EEE+++ E+ +K+E E+KKK
Sbjct: 1608 KAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
Score = 30.1 bits (67), Expect = 0.90
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E + + EE ++ EEE+++ E+ +++E EE+K+ EE KK +NKI
Sbjct: 1617 EAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Score = 30.1 bits (67), Expect = 0.91
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++E EE+++ EE ++ EEE + + EE +KE EE KKK + K
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
Score = 29.3 bits (65), Expect = 1.7
Identities = 17/39 (43%), Positives = 30/39 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
K EE ++E EE++++ EE +++EEE+++ K+EEEKK
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
Score = 29.3 bits (65), Expect = 1.8
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE ++ +E +++ EE ++ EE +++ EE +K +E KKK K
Sbjct: 1439 KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Score = 29.3 bits (65), Expect = 1.9
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L++ EEE + + EE ++E EE++++ EE ++ EEE+KK K +
Sbjct: 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Score = 29.3 bits (65), Expect = 2.0
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
K EE ++ EEE+++ E+ +++E EE+++ EE K+ EE+ K +
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
Score = 29.0 bits (64), Expect = 2.7
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE+++ +E +++ EE ++ +E +++ EE +K EE KKK K
Sbjct: 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Score = 29.0 bits (64), Expect = 2.7
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE ++ +E +++ EE +++ +E ++ E +K+ +E KK K
Sbjct: 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 28.6 bits (63), Expect = 3.1
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE+++ +E +++ EE++++ +E ++ +K+ +E KKK + K
Sbjct: 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Score = 28.6 bits (63), Expect = 3.3
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE++++ +E ++ +++ +E +++ EE+K+ +E KKK + K
Sbjct: 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Score = 28.6 bits (63), Expect = 3.5
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE++ + EE ++ EE + + EE +K EEEKKK + K
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
Score = 28.2 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE ++ EE +++ EE ++ +E +++ EE +K +E KKK K
Sbjct: 1452 KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Score = 28.2 bits (62), Expect = 4.8
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE++ + EE ++ EE + + EE ++ EEE+K+ E+ KKK + K
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
Score = 28.2 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 32/42 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
K E EE++++ EE +++EEE+++ ++EEEK+ EE +K++
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
Score = 27.8 bits (61), Expect = 5.0
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE ++ +E +++ EE ++ +E +++ EE +K+ +E KK K
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
Score = 27.8 bits (61), Expect = 5.0
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +++ +E +++ EE+++ +E +++ EE K+ +E KKK + K
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Score = 27.8 bits (61), Expect = 5.0
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++ +E +++ EE+++ +E +++ EE +K +E KKK K
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 27.8 bits (61), Expect = 5.5
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E +++ EE +++ +E ++ E +++ +E K+ EE KK K
Sbjct: 1484 KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Score = 27.8 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K EE +++ EE ++ +E +++ EE ++ +E +K+ EE KKK
Sbjct: 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 27.8 bits (61), Expect = 6.3
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K EE +++ +E ++ E +++ +E ++ EE +K +E KK + K
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
Score = 27.8 bits (61), Expect = 6.3
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE+++ +E +++ EE ++ +E +++ EE +K+ + KKK + K
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
Score = 27.8 bits (61), Expect = 6.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE +++ +E ++ E +++ +E ++ EE K+ +E KK K
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Score = 27.4 bits (60), Expect = 6.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E E +E E EE+ E E+++EE ++K + KKK K K
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 27.4 bits (60), Expect = 7.0
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE ++ EE +++ EE ++ +E +++ EE K+ +E KKK + K
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
Score = 27.4 bits (60), Expect = 7.0
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEE++ + EE ++ EE + + EE ++ EEEK++ E+ KK+ +
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
Score = 27.4 bits (60), Expect = 7.1
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE ++ +E +++ EE +++ + +++ EE K+ E K +
Sbjct: 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Score = 27.4 bits (60), Expect = 7.2
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++ EE +++E EE+++ EE ++ EEE + + EE KK+ ++K
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
Score = 27.4 bits (60), Expect = 7.5
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEEKEEEEKKKKRRKNK 213
K EEE+++ E+ +++E EE+++ EE EEE + K EE KK K
Sbjct: 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Score = 27.4 bits (60), Expect = 7.8
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K +E +++ EE ++ +E +++ EE +++ +E K+ E KKK
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 27.4 bits (60), Expect = 8.0
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E ++ +++ +E +++ EE+++ +E +K+ EE KK K
Sbjct: 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
Score = 27.4 bits (60), Expect = 8.1
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E +++ EE+++ +E +++ EE ++ +E +K+ EE KK K
Sbjct: 1419 KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Score = 27.4 bits (60), Expect = 8.1
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
K +E ++ EE+++ +E +++ EE ++ +E ++K EE KKK
Sbjct: 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 27.0 bits (59), Expect = 9.1
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + EEE++ + EE ++ EE + + EE K+ EE+KKK + K
Sbjct: 1596 EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
Score = 27.0 bits (59), Expect = 9.5
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ E ++E EE ++ EE +++E EE+++ EE +K ++ K K
Sbjct: 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
Score = 27.0 bits (59), Expect = 9.5
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E +++ EE ++ +E +++ EE ++ EE +K+ EE KK K
Sbjct: 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
Score = 27.0 bits (59), Expect = 9.5
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E +++ EE ++ EE +++ EE ++ +E +K+ EE KK K
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Score = 27.0 bits (59), Expect = 9.6
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE + +E ++ EE+++ +E ++ EE++K +E KKK K
Sbjct: 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
Score = 27.0 bits (59), Expect = 9.8
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE ++ +E +++ EE ++ EE +++ EE K+ +E KKK + K
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 33.9 bits (77), Expect = 0.051
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 33.5 bits (76), Expect = 0.074
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 33.5 bits (76), Expect = 0.079
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ EE EEE+ + E + E EEE+EEEE E E
Sbjct: 80 AEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 31.2 bits (70), Expect = 0.36
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
E EE EEE+ + E + E EEE+EEEE
Sbjct: 79 FAEAGEEAEEEDNDRECPDTEAEEEDEEEE 108
Score = 28.9 bits (64), Expect = 2.3
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 166 WGKLEEEEEEEE-----------EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
G ++ E E E E EE EEE+ + E + E EE++EEE+ +
Sbjct: 58 HGVIDGENSETERPRDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAP 112
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 34.1 bits (78), Expect = 0.051
Identities = 16/44 (36%), Positives = 33/44 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEE+E+E+ +EE+++++E+ +EE ++ K +EE K+KR +
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Score = 32.2 bits (73), Expect = 0.21
Identities = 14/44 (31%), Positives = 33/44 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E+E+ +EE+++++E+ +EE ++ + +EE +E+ K++ K K
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 32.2 bits (73), Expect = 0.22
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + E +EEE+E+E+ +EE+++++E+ +E+ ++ K K+ K K
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 31.8 bits (72), Expect = 0.24
Identities = 15/47 (31%), Positives = 34/47 (72%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE+E+E+ +EE+++++E+ +EE ++ + ++E +EK+ + K K
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 31.4 bits (71), Expect = 0.31
Identities = 13/47 (27%), Positives = 33/47 (70%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+++++E+ +EE ++ + +EE +E+ +++E+EK+KK + +
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Score = 31.0 bits (70), Expect = 0.40
Identities = 13/43 (30%), Positives = 32/43 (74%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E+ +EE+++++E+ +EE ++ + +EE KE+ K+K ++ +
Sbjct: 109 EKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Score = 30.6 bits (69), Expect = 0.53
Identities = 13/44 (29%), Positives = 33/44 (75%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ +EE+++++E+ +EE ++ + +EE +E++ +EK+K++ K
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 30.6 bits (69), Expect = 0.58
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E+E+E+E++ EE + EEE++ E K +K K++
Sbjct: 140 KRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPN 185
Score = 30.6 bits (69), Expect = 0.61
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +EE +E+ +E+E+E+E++ EE + EEEK+ E + K R K
Sbjct: 132 KPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKK 177
Score = 30.2 bits (68), Expect = 0.90
Identities = 13/42 (30%), Positives = 31/42 (73%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++++E+ +EE ++ + +EE +E+ +E+EKE+E+K ++ R
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 29.9 bits (67), Expect = 1.0
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E+E+E+E++ EE + EEE++ E + + ++ KKK K
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Score = 29.5 bits (66), Expect = 1.3
Identities = 13/47 (27%), Positives = 34/47 (72%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E+E+ +EE+++++E+ +EE ++ + +EE +++ K+K++ K K
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 29.1 bits (65), Expect = 1.8
Identities = 13/43 (30%), Positives = 31/43 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
K ++E+ +EE ++ + +EE +E+ +E+E+EKE++ ++ + R
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 29.1 bits (65), Expect = 1.9
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE +E+ +E+E+E+E++ EE + EEE+K E + K R K
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKP 178
Score = 29.1 bits (65), Expect = 2.0
Identities = 11/43 (25%), Positives = 32/43 (74%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++++E+ +EE ++ + +EE +E+ +E+++E+EKK + +++
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 29.1 bits (65), Expect = 2.1
Identities = 11/46 (23%), Positives = 33/46 (71%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +++E+ +EE ++ + +EE +E+ +E+E+++E++ ++ R + +
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 28.7 bits (64), Expect = 2.3
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E+E+E++ EE + EEE++ E + ++ KKK K K
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKK 188
Score = 28.3 bits (63), Expect = 3.0
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K + +EE ++ + +EE +E+ +E+E+E+E+K EE + ++ K +
Sbjct: 120 KKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 28.3 bits (63), Expect = 3.7
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E+E+E++ EE + EEE++ E + +K ++K ++K
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Score = 27.5 bits (61), Expect = 5.6
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE++ E + ++ +++ +++E EEEK+++ +
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREA 203
Score = 27.5 bits (61), Expect = 5.8
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +E+ +E+E+E+E++ EE + EEE++ E+ + + K+ K
Sbjct: 136 EAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKK 181
Score = 27.5 bits (61), Expect = 6.4
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E+ +EE ++ + +EE +E+ +E+E+E++++ E+ + R + K
Sbjct: 119 KKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
>gnl|CDD|220223 pfam09405, Btz, CASC3/Barentsz eIF4AIII binding. This domain is
found on CASC3 (cancer susceptibility candidate gene 3
protein) which is also known as Barentsz (Btz). CASC3 is
a component of the EJC (exon junction complex) which is
a complex that is involved in post-transcriptional
regulation of mRNA in metazoa. The complex is formed by
the association of four proteins (eIF4AIII, Barentsz,
Mago, and Y14), mRNA, and ATP. This domain wraps around
eIF4AIII and stacks against the 5' nucleotide.
Length = 116
Score = 32.4 bits (74), Expect = 0.053
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E E + E E +E++E + +E E+ + +N
Sbjct: 2 VESERQSGRTPSAEPTEPKEDKERKRREHEKYDDEDDEN 40
Score = 28.6 bits (64), Expect = 1.2
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E E + E E +E++E + E EK ++E +
Sbjct: 2 VESERQSGRTPSAEPTEPKEDKERKRREHEKYDDEDDE 39
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 33.8 bits (78), Expect = 0.053
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
W ++EEE E + +EE EEEEE +
Sbjct: 306 AWYLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 32.2 bits (74), Expect = 0.18
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
++EEE E + +EE EEEEE +
Sbjct: 304 FLAWYLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.3 bits (69), Expect = 0.80
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.5 bits (67), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.8 bits (65), Expect = 2.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++EEE E + +EE EEEE+ +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.4 bits (64), Expect = 3.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEK 205
++EEE E + +EE +EEEE
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEES 337
Score = 28.0 bits (63), Expect = 4.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++EEE E + +EE EE+EE
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIN 339
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 33.4 bits (77), Expect = 0.057
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 169 LEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
LE+E + + E EEEE++E++EE ++EE K R
Sbjct: 284 LEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKARA 326
Score = 30.7 bits (70), Expect = 0.55
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
G + E EEEE++E++EE+++EE + +
Sbjct: 292 GVPQGGGEAAASAEEEEDDEDDEEDDDEETLKARA 326
Score = 30.0 bits (68), Expect = 0.84
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
G + + E EEEE++E++EE+++EE +
Sbjct: 291 GGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKA 324
Score = 27.3 bits (61), Expect = 6.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ E EEEE++E++EE+++EE + +E
Sbjct: 295 QGGGEAAASAEEEEDDEDDEEDDDEETLKARAWDE 329
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 32.2 bits (74), Expect = 0.057
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
W K +EE++ E E+ + EE+ E E E+ E+E EE E + RR+ K
Sbjct: 24 WEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELK 71
Score = 28.4 bits (64), Expect = 1.5
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ + E+++EE++ E E+ + EE+ E E ++ E++ ++
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEA 63
Score = 28.0 bits (63), Expect = 2.1
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E+++EE++ E E+ + EE+ E E EK E+E ++ +
Sbjct: 23 KWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELAR 67
Score = 28.0 bits (63), Expect = 2.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E++ E E+ + EE+ E E E+ E+E E+ E E ++ K +
Sbjct: 28 QEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Score = 27.6 bits (62), Expect = 2.6
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K + + E+++EE++ E E+ + EE+ E E E+ EK+ + + ++
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAEL 65
Score = 26.8 bits (60), Expect = 4.9
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ E E+ + EE+ E E E+ E+E EE E E +++ +
Sbjct: 31 KKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAK 75
Score = 26.1 bits (58), Expect = 8.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
KL + EE+ E E E+ E+E EE E E + + E KK
Sbjct: 37 KLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 32.9 bits (75), Expect = 0.060
Identities = 20/40 (50%), Positives = 22/40 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE + EE EEE E E EE EE EE EK E E +R
Sbjct: 3 EEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANER 42
Score = 31.3 bits (71), Expect = 0.22
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++ EE EEE E E EE EE EE E+ E E ++ +NK
Sbjct: 4 EIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENK 49
Score = 28.6 bits (64), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE E E EE EE EE E+ E E E+ +E + K R
Sbjct: 12 EEVEATETEETVEEVVEETPEKSELELANERADEFENKYLR 52
Score = 28.3 bits (63), Expect = 2.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE + EE EEE E E EE EE EE +K
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKS 34
Score = 27.5 bits (61), Expect = 4.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE + EE EEE E E EE EE +E EK + N+
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANE 41
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 33.4 bits (77), Expect = 0.061
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
K E + EEEEE E E EE E
Sbjct: 266 KRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 32.6 bits (75), Expect = 0.13
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E + EEEEE E E EE E + E
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPELDLET 298
Score = 32.2 bits (74), Expect = 0.15
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ E + EEEEE E E EE E E + R
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPELDLETISAQSLR 305
Score = 31.8 bits (73), Expect = 0.25
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+ + + E + EEEEE E E EE E
Sbjct: 262 RAKAKRAEILAQRAEEEEESSEGAAETIEEPE 293
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 32.0 bits (73), Expect = 0.064
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ +EEE E+ EEE E+EEE+E+ +K+K
Sbjct: 68 GADIQEEERRSARLARLEDREEERLEKEEEREKRARKRK 106
Score = 32.0 bits (73), Expect = 0.074
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E + +EEE E+ EEE E++EE EK+ ++RK
Sbjct: 65 EAGGADIQEEERRSARLARLEDREEERLEKEEEREKRARKRK 106
Score = 31.2 bits (71), Expect = 0.13
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + +EEE E+ EEE ++EEE++K+ RK K
Sbjct: 65 EAGGADIQEEERRSARLARLEDREEERLEKEEEREKRARKRK 106
Score = 28.9 bits (65), Expect = 0.82
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ +EEE E+ EEE E+EEE ++ K+K
Sbjct: 68 GADIQEEERRSARLARLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 33.6 bits (77), Expect = 0.066
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 168 KLEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+++E + E E EE EEE + + ++ KKK +K
Sbjct: 245 SIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQK 290
Score = 32.5 bits (74), Expect = 0.16
Identities = 17/48 (35%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 168 KLEEEEEEE-EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
KL+E+ E +E++E+E++EE +EE +++++ KKK RK K+
Sbjct: 322 KLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKV 369
Score = 30.9 bits (70), Expect = 0.47
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EEE ++E + E E EE EEE + + RR
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRR 282
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+E++E+E++EE +EE E+++K +++ +K++
Sbjct: 334 YMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 33.5 bits (77), Expect = 0.066
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KL E EEE+ E + +EE ++ + E + EE +E E K
Sbjct: 22 EKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEG 68
Score = 31.6 bits (72), Expect = 0.32
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E +E + E+E+ E EEE+ E + +++ + +I
Sbjct: 5 REALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEI 48
Score = 30.8 bits (70), Expect = 0.57
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
L+E E E +E + E+E+ E EEE+ E + K++ K
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDK 43
Score = 30.4 bits (69), Expect = 0.59
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E+ E EEE+ E + +EE ++ + E + E+ + K
Sbjct: 18 LTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
Score = 30.4 bits (69), Expect = 0.64
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+L E E +E + E+E+ E EEE+ E +E+ K
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDA 46
Score = 30.0 bits (68), Expect = 0.77
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE+ E + +EE ++ + E + EE ++ E +
Sbjct: 25 AEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGG 70
Score = 30.0 bits (68), Expect = 0.83
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E + E+E+ E EEE+ E + +EE ++ + + R
Sbjct: 12 AKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDR 50
Score = 29.2 bits (66), Expect = 1.4
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L + E+E+ E EEE+ E + +EE ++ + E + ++ + +
Sbjct: 14 ELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELE 59
Score = 28.9 bits (65), Expect = 2.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +E + E+E+ E EEE+ E + +E+ ++ + R +
Sbjct: 10 ELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEE 53
Score = 28.5 bits (64), Expect = 2.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+L +E + E+E+ E EEE+ E + +EE + + +
Sbjct: 8 LAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAE 47
Score = 27.7 bits (62), Expect = 5.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E + E+E+ E EEE+ E + +EE +K + E +
Sbjct: 11 LAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELL 55
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 32.8 bits (75), Expect = 0.067
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ ++ + E ++++ EE EEEEE+EE+ E E
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLE 34
Score = 32.0 bits (73), Expect = 0.13
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E+ ++ + E ++++ EE EEEEE+EE+ E E
Sbjct: 1 MEDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESS 36
Score = 31.6 bits (72), Expect = 0.15
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
++++ EE EEEEE+EE+ E E + K+ K + +N
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASEN 54
Score = 30.4 bits (69), Expect = 0.40
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ E ++++ EE EEEEE+EE+ E E +
Sbjct: 8 IDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 30.1 bits (68), Expect = 0.56
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ ++ + E ++++ EE EEEEE+EE+ E E +
Sbjct: 3 DSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 27.0 bits (60), Expect = 6.7
Identities = 10/30 (33%), Positives = 22/30 (73%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E+ ++ + E ++++ EE EEEE++EE+ +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAE 31
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 32.3 bits (74), Expect = 0.068
Identities = 16/42 (38%), Positives = 31/42 (73%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+ EE+E E+EE+E +EE+E+E + ++EE++K+ + +
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELE 56
Score = 32.3 bits (74), Expect = 0.076
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+EE+ EE+E E+EE+E +EE+E+E + +KEE EK+ +
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEE 54
Score = 31.5 bits (72), Expect = 0.15
Identities = 20/53 (37%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEKEEEEKKKKRRKNK 213
G++ + EE+ EE+E E+EE+E +EE+E+E ++EE+E+ ++ ++ KNK
Sbjct: 9 GRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 31.5 bits (72), Expect = 0.16
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEE--------EEEEEEEEKEEEEKKKK 208
E+ EE+E E+EE+E +EE+E+E EE E+ E+ E+ K K
Sbjct: 16 EKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 30.4 bits (69), Expect = 0.41
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 8/50 (16%)
Query: 171 EEEEEEEEEEEEEEEEEEE--------EEEEEEEEEEKEEEEKKKKRRKN 212
EE+E E+EE+E +EE+E+E EE E+ EE ++ + K R +
Sbjct: 19 EEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYAD 68
Score = 29.6 bits (67), Expect = 0.56
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ +E E+EE+E +EE+E+E + ++EE E++ EE +K K
Sbjct: 17 KREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAK 59
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 33.4 bits (77), Expect = 0.071
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LE EE EEE EE EE + E+ + E++ +E+
Sbjct: 828 LEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
Score = 32.3 bits (74), Expect = 0.18
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
K++ E E EE EEE EE EE + E+ K E++
Sbjct: 821 KVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDID 859
Score = 31.1 bits (71), Expect = 0.44
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
L EE EEE EE EE + E+ + E++ ++E +
Sbjct: 831 LPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 31.1 bits (71), Expect = 0.45
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E EE EEE EE EE + E+ + E++ ++E+
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
Score = 30.7 bits (70), Expect = 0.55
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E EE EEE EE EE + E+ + E+ ++E
Sbjct: 829 EPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
Score = 30.0 bits (68), Expect = 0.92
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE EEE EE EE + E+ + E++ + E+
Sbjct: 833 YEEPEEETAEEPEEVDPEDVKSEDDIDDEDTG 864
Score = 30.0 bits (68), Expect = 1.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E E EE EEE EE EE + E+ + E + +++
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE EEE EE EE + E+ + E++ ++++ +
Sbjct: 833 YEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 28.0 bits (63), Expect = 4.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E EE EEE EE EE + E+ + +++ + +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 30.4 bits (69), Expect = 0.073
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEK 200
EEE+ E+EEE E+EEE EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 30.4 bits (69), Expect = 0.073
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEK 205
EEE+ E+EEE E+EEE EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 29.2 bits (66), Expect = 0.19
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKK 206
EEE+ E+EEE E+EEE E++ E K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 28.8 bits (65), Expect = 0.26
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 183 EEEEEEEEEEEEEEEEEKEEEEKKK 207
EEE+ E+EEE E+EEE +E+ E K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 28.5 bits (64), Expect = 0.31
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKKKK 208
EEE+ E+EEE E+EEE EE+ + K+
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 27.7 bits (62), Expect = 0.61
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKKKKR 209
EEE+ E+EEE E+EE+ EE+ + KR
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 26.9 bits (60), Expect = 1.3
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 186 EEEEEEEEEEEEEEKEEEEKKKKRR 210
EEE+ E+EEE E+E+E EE+ + +R
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 33.0 bits (75), Expect = 0.075
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E E EEE+E EEEEEE EEEEE + E++ E K RK
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRK 44
Score = 31.0 bits (70), Expect = 0.41
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
LEEE+E EEEEEE EEEEE + E++ E K +KK R
Sbjct: 7 LEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDR 47
Score = 29.1 bits (65), Expect = 1.4
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 18/66 (27%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEE------------------EEEEEEEEEEEKEEEEKKKK 208
+ EEEEEE EEEEE + E++ +E E E +E+ EEE K+K
Sbjct: 11 DESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRK 70
Query: 209 RRKNKI 214
+ K
Sbjct: 71 AEERKR 76
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 33.1 bits (76), Expect = 0.076
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
K EEE E E E+ E+ +++ +EE+K E E+ + R N
Sbjct: 123 KEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETRHRAAN 167
Score = 28.5 bits (64), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++++EEEE E E E+ E+ + ++K K
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAK 151
Score = 27.7 bits (62), Expect = 4.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++++EEEE E E E E+ + K++ K
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAK 151
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 33.3 bits (76), Expect = 0.077
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 168 KLEEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EEE +E EE E+E++ + E E +EE+E+ E EE + R N
Sbjct: 76 KKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNL 123
Score = 32.9 bits (75), Expect = 0.11
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+LEE E+E+++ + E E +EE+E+ E EE + E R
Sbjct: 85 ELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNN 128
Score = 27.5 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
KLE + E E + E +E ++EEE +E EE EK+
Sbjct: 54 KLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDD 94
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 33.5 bits (77), Expect = 0.077
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE EEE EE +EE E EE EE EE EE E+ +R ++
Sbjct: 440 AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
Score = 30.4 bits (69), Expect = 0.73
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E E E E EE EE EE EEE E E E EE E + ++ K
Sbjct: 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
Score = 29.6 bits (67), Expect = 1.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE +EE +E EEE EE E +E EE+ EE E + + ++
Sbjct: 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEEL 286
Score = 29.6 bits (67), Expect = 1.5
Identities = 20/46 (43%), Positives = 24/46 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L E E E EE EE EE EEE E E E EE E + ++ K +
Sbjct: 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
Score = 29.3 bits (66), Expect = 1.7
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
KL+E EE E EE+ EE +EE E E E EE E E ++ + R
Sbjct: 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
Score = 28.9 bits (65), Expect = 2.4
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEE+ EE +EE E E E EE E E EE E + EE +++
Sbjct: 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
Score = 28.9 bits (65), Expect = 2.6
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L EE EE +EE +E EEE EE E +E EEK EE + + +
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE 281
Score = 28.5 bits (64), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ +E E E E EE EE EE EEE E E + ++
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
Score = 28.5 bits (64), Expect = 2.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E + +E E E E EE EE EE EEE E E + + + +I
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
Score = 28.5 bits (64), Expect = 3.3
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E+ EE + +E E E E EE EE EE E++ + +I
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Score = 28.5 bits (64), Expect = 3.6
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 151 KEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEE----EEEEEEEEEEKEEEEKK 206
E L L + +LEE E + EE E + +E EE EE+ EE +EE E E +
Sbjct: 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE 359
Query: 207 KKRRKNKI 214
+ + ++
Sbjct: 360 LEELEAEL 367
Score = 28.5 bits (64), Expect = 3.7
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L EE E EE+ EE +EE E E E EE E + EE + + +
Sbjct: 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
Score = 28.1 bits (63), Expect = 4.8
Identities = 18/33 (54%), Positives = 20/33 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
+LE E EE EE EE EEE E E E EE E +
Sbjct: 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
Score = 28.1 bits (63), Expect = 4.8
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E E E EE EE EE EEE E E E +E E +
Sbjct: 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
Score = 28.1 bits (63), Expect = 4.9
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+LEE EE EE +EE +E EEE EE E +E EE+
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
Score = 27.7 bits (62), Expect = 5.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
++ + +E E E E EE EE EE EEE E E E
Sbjct: 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
Score = 27.7 bits (62), Expect = 5.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+LEE + +E E E E EE EE EE EE+ E + +
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Score = 27.3 bits (61), Expect = 8.5
Identities = 20/41 (48%), Positives = 23/41 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE EE EE EEE E E E EE E + E+ +EE K R
Sbjct: 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
Score = 27.3 bits (61), Expect = 8.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+LE + +E EE E EE+ EE +EE E E + EE + +
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
Score = 26.9 bits (60), Expect = 10.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE E E EE E E EE E EE EE+ E + + + + +
Sbjct: 351 EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
Score = 26.9 bits (60), Expect = 10.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LE+ EE+ EE E+ E E EE EE EE E E + + +
Sbjct: 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 33.2 bits (76), Expect = 0.079
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E E E E EE E EE E+ EEE K +
Sbjct: 211 ETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKP 252
Score = 32.0 bits (73), Expect = 0.19
Identities = 15/42 (35%), Positives = 16/42 (38%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E E E E EE E EE E EE+ K K
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Score = 31.6 bits (72), Expect = 0.27
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E E E E EE E EE E+ +EE K K
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Score = 31.6 bits (72), Expect = 0.27
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E E E EE E EE E+ E+E + K
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPP 253
Score = 31.6 bits (72), Expect = 0.29
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 160 RSLCHGW-GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
R L GW G L+ E E +E E E E E E EE + + +
Sbjct: 185 RGLHEGWLGPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETE 239
Score = 29.7 bits (67), Expect = 1.2
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E E E EE E EE ++ E++ +
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKP 252
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 31.5 bits (72), Expect = 0.086
Identities = 5/35 (14%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E+ +++E+EE+E++ ++++++++++ +
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDL 83
Score = 31.1 bits (71), Expect = 0.11
Identities = 5/35 (14%), Positives = 26/35 (74%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ +++E+EE+E++ +++++++++++ + +
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLD 84
Score = 31.1 bits (71), Expect = 0.13
Identities = 5/35 (14%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E+ +++E+EE+E++ ++++++++ ++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLP 81
Score = 30.4 bits (69), Expect = 0.20
Identities = 5/35 (14%), Positives = 27/35 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ +++E+EE+E++ +++++++++++ + ++
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDD 85
Score = 29.6 bits (67), Expect = 0.36
Identities = 4/35 (11%), Positives = 26/35 (74%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +++E+EE+E++ +++++++++++ +++
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDD 86
Score = 29.6 bits (67), Expect = 0.44
Identities = 4/35 (11%), Positives = 27/35 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+++E+EE+E++ +++++++++++ + ++++
Sbjct: 53 AAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 29.2 bits (66), Expect = 0.54
Identities = 4/36 (11%), Positives = 26/36 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+++E+EE+E++ +++++++++++ + +++
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 28.0 bits (63), Expect = 1.7
Identities = 4/35 (11%), Positives = 27/35 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+++E+EE+E++ +++++++++++ + + ++ +
Sbjct: 55 KKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 27.7 bits (62), Expect = 2.3
Identities = 5/37 (13%), Positives = 28/37 (75%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K E+EE+E++ +++++++++++ + ++++ + ++
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDD 92
Score = 27.3 bits (61), Expect = 2.9
Identities = 5/30 (16%), Positives = 20/30 (66%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ E+ +++E+EE+E++ ++ ++++
Sbjct: 47 AADAEDAAKKDEDEEDEDDVVLDDDDDDDD 76
Score = 25.7 bits (57), Expect = 8.8
Identities = 3/35 (8%), Positives = 27/35 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE+E++ +++++++++++ + ++++ + ++++
Sbjct: 60 EEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDD 94
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 33.2 bits (76), Expect = 0.088
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 169 LEEEEEEEEEE---EEEEEEEEEEEEEEEEEEEEKEEEE 204
L E E + E E EEE +E ++ + ++ EE +
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETD 304
Score = 31.3 bits (71), Expect = 0.33
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E E EEE +E ++ + ++ EE ++ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 31.3 bits (71), Expect = 0.33
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E EEE +E ++ + ++ EE ++ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 31.3 bits (71), Expect = 0.35
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
E E EEE +E ++ + ++ EE ++ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 31.3 bits (71), Expect = 0.41
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E EEE +E ++ + ++ EE ++ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 29.8 bits (67), Expect = 1.1
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E E + E E EEE +E ++ + +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDG 300
Score = 29.0 bits (65), Expect = 1.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
E E EEE +E ++ + ++ EE ++ +E
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 29.0 bits (65), Expect = 1.9
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E E + E E EEE +E ++ + ++
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDG 300
Score = 28.6 bits (64), Expect = 3.0
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E E + E E EEE +E + +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDG 300
Score = 27.5 bits (61), Expect = 5.6
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E + E E EEE +E ++ + ++I
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQI 306
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 33.1 bits (75), Expect = 0.089
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E +E+EE+ ++ +E+ EE + EE ++ +E KKKK +K K
Sbjct: 212 EKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVK 253
Score = 32.3 bits (73), Expect = 0.20
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K E+E +E+EE+ ++ +E+ EE + EE +E +E +KKK ++ ++
Sbjct: 209 KTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEV 255
Score = 29.6 bits (66), Expect = 1.3
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEE---EEEKEEEEKKKKRRK 211
E+ E+E +E+EE+ ++ +E+ EE EE KE +E KKK+ K
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTK 250
Score = 28.1 bits (62), Expect = 4.2
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++ +E+EE+ ++ +E+ EE + EE +E +E +K++ +K K+ K
Sbjct: 214 EVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTK 257
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 33.1 bits (76), Expect = 0.089
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 152 EMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E H S W +L ++ + E E+ E E E E++EE E E
Sbjct: 98 EKHSLSAPESFLERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEG 151
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 32.6 bits (75), Expect = 0.090
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EEE + +E E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLN 69
Score = 29.9 bits (68), Expect = 0.64
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
L EEE + +E E+ E+ +++ +++EE+
Sbjct: 30 ALTEEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLN 69
Score = 29.2 bits (66), Expect = 1.1
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EEE + +E E+ E+ +++ +++E+E
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLN 69
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 31.6 bits (72), Expect = 0.091
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR-RKNK 213
+E + EE +EE EE E + E E E+K K +KN+
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILKKNR 43
Score = 31.2 bits (71), Expect = 0.12
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
L+E + EE +EE EE E + E E EK+ + KK R+
Sbjct: 2 LDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILKKNRR 44
Score = 27.8 bits (62), Expect = 2.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E + EE +EE EE E + E + +++ KI
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKI 38
Score = 27.4 bits (61), Expect = 2.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ EE +EE EE E + E E E++ + KK +R
Sbjct: 3 DESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILKKNRR 44
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 33.1 bits (76), Expect = 0.091
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK-KKKRRKNKI 214
L + +EEE E+E EEEE E E+ K+ EE ++ +N
Sbjct: 394 LSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSE 440
Score = 31.2 bits (71), Expect = 0.37
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ EE EE ++ EE E ++EE+ + EE +++RR+
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEEDILRIIEEYRRERRRE 652
Score = 31.2 bits (71), Expect = 0.39
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
K++EEE E+E EEEE E E+ ++ +E E+ ++
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSE 440
Score = 30.1 bits (68), Expect = 0.92
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
L E + +EEE E+E EEEE E ++ +K ++
Sbjct: 390 LAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEET 430
Score = 28.1 bits (63), Expect = 3.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E EEEE E E+ ++ EE E+ EEE + +R+ +
Sbjct: 402 RPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELE 446
Score = 27.7 bits (62), Expect = 5.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ EE EE ++ EE E ++EE+ EE ++++RR+
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEEDILRIIEEYRRERRRE 652
Score = 27.4 bits (61), Expect = 6.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E EEE E + E EE + E E+ E E E E + K R+ +I
Sbjct: 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREI 476
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 33.1 bits (76), Expect = 0.098
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E EE E+ E EE +EE EE+ EE E+ + + ++
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Score = 32.4 bits (74), Expect = 0.16
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ E +EE EE E EE E+ E EE KEE E+K ++
Sbjct: 328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374
Score = 31.2 bits (71), Expect = 0.49
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE +EE EE E E+EE E+E +E EEE+EE EEE ++ + ++
Sbjct: 857 ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903
Score = 30.8 bits (70), Expect = 0.54
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE +E+ E +EE EE E EE E+ E E+ K+ + K
Sbjct: 321 LEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366
Score = 30.8 bits (70), Expect = 0.55
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EE EE EE +E+ E +EE EE E EE E+ +
Sbjct: 314 LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAK 360
Score = 30.8 bits (70), Expect = 0.55
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE EE +E+ E +EE EE E EE E+ E ++ K +
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEK 366
Score = 30.8 bits (70), Expect = 0.57
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEE EE EE +E+ E +EE EE E EE E+ + + K +
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362
Score = 30.5 bits (69), Expect = 0.81
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
LEE E+ E EE +EE EE+ EE EE E +++
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390
Score = 30.5 bits (69), Expect = 0.82
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +EE EE+ EE EE E EE E E E E + + + K
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELK 403
Score = 30.1 bits (68), Expect = 0.88
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+LEE +EE EE+ EE EE E EE + E E + R +
Sbjct: 355 ELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Score = 30.1 bits (68), Expect = 0.97
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE E EE EE EE +E+ E +EE EE E EE ++ +
Sbjct: 313 ELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359
Score = 29.7 bits (67), Expect = 1.2
Identities = 22/46 (47%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEEE EE EE+ +E EEE EE E+E EE +E+ EE + +K
Sbjct: 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877
Score = 29.7 bits (67), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E EE E+ E EE +EE EE+ E+ EE + R +
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREE 384
Score = 29.7 bits (67), Expect = 1.4
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+LEE E+E EE +EE EE E E+EE E+E +E EEE+++ +
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892
Score = 29.3 bits (66), Expect = 1.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E +EE EE+ EE EE E EE E E E + + ++
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEEL 402
Score = 29.3 bits (66), Expect = 1.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E+ E EE +EE EE+ EE EE E ++ + ++
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL 392
Score = 29.3 bits (66), Expect = 1.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EE +EE EE+ EE EE E EE E E + +N++
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399
Score = 28.9 bits (65), Expect = 2.2
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++EE EEE EE EE+ +E EEE EE E+E EE +EE ++ + K ++
Sbjct: 829 EIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE EE +E+ E +EE EE E EE ++ + ++ ++
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363
Score = 28.9 bits (65), Expect = 2.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E EE +EE EE+ EE EE E EE + + +I
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEI 395
Score = 28.9 bits (65), Expect = 2.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE +E+ E +EE EE E EE E+ + EE K++ K
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368
Score = 28.9 bits (65), Expect = 2.6
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE EE + +EE EE EE+ + +EE EE EEE ++ +RR + +
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDAL 812
Score = 28.5 bits (64), Expect = 2.9
Identities = 22/47 (46%), Positives = 26/47 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE EEE EE EEE EE +E EE EEE E E+ + K +I
Sbjct: 735 LQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781
Score = 28.5 bits (64), Expect = 3.1
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
LEEE EE E+E EE +EE EE E E+EE E++ +E +++K +
Sbjct: 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891
Score = 28.5 bits (64), Expect = 3.4
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE + E EEE E+ + EE EEE EE EEE ++ + R ++
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEEL 763
Score = 28.1 bits (63), Expect = 3.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE EE+ EE EE E EE E E + E + + +
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404
Score = 28.1 bits (63), Expect = 4.0
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LEE +EE EE E+E EE + E EE EE EE +EE + K ++
Sbjct: 255 LEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEEL 300
Score = 28.1 bits (63), Expect = 4.4
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEE E E+EE E+E +E EEE+EE EEE E E E + K K
Sbjct: 863 EELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909
Score = 28.1 bits (63), Expect = 4.6
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+L EEE E+ + EE EEE EE EEE EE +E ++ + +
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770
Score = 28.1 bits (63), Expect = 4.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LEE EE E EE E E E E E EE + E + + R ++
Sbjct: 371 LEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERL 416
Score = 27.8 bits (62), Expect = 5.0
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEEE EEE EE +EE EE E+E EE + + EE +++ +
Sbjct: 241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQE 288
Score = 27.8 bits (62), Expect = 5.0
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
LE+E EE EEE EE EE+ +E EEE EE E++ EE K++
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA 870
Score = 27.8 bits (62), Expect = 5.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L E EE E E EE EE EE +E+ E +E+ EE + +
Sbjct: 304 ISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351
Score = 27.8 bits (62), Expect = 6.0
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE E E EE E E EE EE EE +EK E K++ + +
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345
Score = 27.8 bits (62), Expect = 6.3
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE E+E EE + E EE EE EE +EE E +EE ++ + + +
Sbjct: 261 ELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLL 307
Score = 27.4 bits (61), Expect = 6.5
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+LEEE E EE + +EE EE EE+ + +E+ EE +++
Sbjct: 762 ELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEE 804
Score = 27.4 bits (61), Expect = 6.8
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE EE +E EE EEE E EE + +EE EE E+K++ + ++
Sbjct: 750 EEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEEL 795
Score = 27.4 bits (61), Expect = 6.9
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE EE +EE EE E+E EE + E EE EE EE +++ K +I
Sbjct: 253 EELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297
Score = 27.4 bits (61), Expect = 6.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E+ EE + EE E + EE + E +EE E+ + R +
Sbjct: 699 SLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEE 741
Score = 27.4 bits (61), Expect = 7.6
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE E+E EE +EE EE E E+EE E+E ++ EEEK++ +
Sbjct: 852 EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892
Score = 27.4 bits (61), Expect = 8.0
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++EE EE+ +E EEE EE E+E EE +EE EE E E+++
Sbjct: 834 EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874
Score = 27.0 bits (60), Expect = 8.6
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE E + E E E E EEE EEE E+ + E E++ +R + +I
Sbjct: 915 EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958
Score = 27.0 bits (60), Expect = 9.1
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
++EE E E E EE E E EE EE EE +E+ + K
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338
Score = 27.0 bits (60), Expect = 9.1
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+LEE E + E E E E EEE EEE E+ E E E + ++
Sbjct: 913 RLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953
Score = 27.0 bits (60), Expect = 9.5
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEE EEE EEE EE +EE EE E+E EE + E ++ + +
Sbjct: 239 KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE 285
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 31.8 bits (72), Expect = 0.099
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEE------EEEEKEEEEKKKKRRK 211
+ E+E E E EE EE+ E +E E E+KEE+E ++ RK
Sbjct: 7 MGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRK 55
Score = 30.6 bits (69), Expect = 0.29
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E EE EE+ E +E + E E+++E+E ++ R+
Sbjct: 15 EPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPRKTTPY 59
Score = 27.1 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ + E+E E E EE EE+ E +E K
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVK 35
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 33.0 bits (75), Expect = 0.10
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE E EEE E+ E+E + + ++++ E + KN
Sbjct: 376 ENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNS 420
Score = 33.0 bits (75), Expect = 0.12
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E++ ++ E+ E E EE E EEE E+ E
Sbjct: 359 PLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYE 393
Score = 32.7 bits (74), Expect = 0.16
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
LE++ ++ E+ E E EE E EEE E E+E +R
Sbjct: 360 LEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKR 401
Score = 31.9 bits (72), Expect = 0.29
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K+E E EE E EEE E+ E+E + + ++E + R ++
Sbjct: 372 KMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Score = 31.5 bits (71), Expect = 0.39
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
+K +L S P + + + + E E EEE E+ E+E + + +++E
Sbjct: 348 RKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDE 407
Query: 196 EEEEKEEEEKKKK 208
E ++K
Sbjct: 408 LENHFRAADEKNS 420
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 31.2 bits (71), Expect = 0.10
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE++ EEE +E EEEE EEEE++E EE +K + K K
Sbjct: 48 NEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKRK 93
Score = 31.2 bits (71), Expect = 0.12
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEE----------EEEEEEEEEEEEEEKEEEEKK 206
WG +++E E EE+ EEEE EEE +E EEEE EEEE K
Sbjct: 25 GNWGSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
Score = 31.2 bits (71), Expect = 0.12
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE+ E EE++ EEE +E EEEE EE+E++E
Sbjct: 44 EEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 32.2 bits (74), Expect = 0.11
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
K +E+ EE E E E++EE +E E E+E +E +
Sbjct: 7 KTPQEQVSEEIEAEVEQQEEADEAELEDELDEADA 41
Score = 31.8 bits (73), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE++ +E+ EE E E E++EE +E E E E +E
Sbjct: 4 EEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEA 39
Score = 30.7 bits (70), Expect = 0.35
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE++ +E+ EE E E E++EE +E E ++E ++ R
Sbjct: 3 NEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADAR 42
Score = 30.3 bits (69), Expect = 0.52
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE++ +E+ EE E E E++EE +E + E+E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDE 35
Score = 30.3 bits (69), Expect = 0.54
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE++ +E+ EE E E E++EE +E E E+E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDE 35
Score = 29.5 bits (67), Expect = 0.90
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ EE E E E++EE +E E E+E +E + + E
Sbjct: 12 QVSEEIEAEVEQQEEADEAELEDELDEADARIAE 45
Score = 28.3 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E E++EE +E E E+E +E + E E
Sbjct: 14 SEEIEAEVEQQEEADEAELEDELDEADARIAELE 47
Score = 28.3 bits (64), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ EE E E E++EE +E E E+E +E + E E
Sbjct: 12 QVSEEIEAEVEQQEEADEAELEDELDEADARIAELEA 48
Score = 27.2 bits (61), Expect = 6.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E E E++EE +E E E+E +E + E E + E + + R
Sbjct: 18 EAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEER 58
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 32.6 bits (74), Expect = 0.11
Identities = 7/49 (14%), Positives = 25/49 (51%)
Query: 160 RSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ + +G+ ++E + +EEE+ ++++ E+ ++ +E+
Sbjct: 265 KGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
Score = 29.2 bits (65), Expect = 1.6
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +++E + +EEE+ ++++ E+ + + N
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 30.7 bits (70), Expect = 0.12
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
KL E+ EE E + E E E ++ ++R
Sbjct: 21 KLSAREQLSLFLEELEADAAALEAEAEAAAAPEQPAAPPRRRPG 64
Score = 28.8 bits (65), Expect = 0.50
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE E + E E E E+ +RR +
Sbjct: 32 LEELEADAAALEAEAEAAAAPEQPAAPPRRRPGR 65
Score = 25.7 bits (57), Expect = 7.1
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+L EE E + E E E E+ +++ RK
Sbjct: 26 EQLSLFLEELEADAAALEAEAEAAAAPEQPAAPP----RRRPGRK 66
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 31.1 bits (71), Expect = 0.12
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
G G E+EEE E + + E+E+ + E EEEEEEK+
Sbjct: 67 GDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
Score = 29.9 bits (68), Expect = 0.39
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ + +EE+EEE E + + E+E+ + E EEEE++K+R
Sbjct: 65 DVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
Score = 26.9 bits (60), Expect = 4.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 170 EEEEEEEEEEEEEEEEEEEEE--EEEEEEEEEKEEE 203
+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 73 DEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 26.5 bits (59), Expect = 6.2
Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKE---EEEKKKKRR 210
++ + +EE+EEE E + + E+E+ + E EEE+++K+R
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 32.7 bits (75), Expect = 0.12
Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 14/142 (9%)
Query: 68 EKKNPFDIAQSIASVVTSELATNPSLAKVIDKIEVAKPGFVNVF-LSRVYAGEQIKDIIV 126
+KNP+ + + + L E+A V++F I +I+
Sbjct: 744 SQKNPYQVYTEEGTKKFNIL-----------LQEIAYDVIVSLFNNPNAEKILIITEILS 792
Query: 127 NGVQPPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEE 186
+G+ +N + + L+D + +E + L + EE E EE++ ++E
Sbjct: 793 DGINNSDINDRPQELIDQIIES--EEERLKALRIQREEMLMRPEELELINEEQKNLKQEI 850
Query: 187 EEEEEEEEEEEEEKEEEEKKKK 208
+ E E +E EEE + + K
Sbjct: 851 KLELSEIQEAEEEIQNINENKN 872
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 32.8 bits (75), Expect = 0.13
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E+EEE +E++ E EE EEE E EE ++ E ++ K
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 31.6 bits (72), Expect = 0.26
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 170 EEEEEEEEEEEEEEE---EEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE+EEE +E++ E EE EEE E EE ++++ +E K KR
Sbjct: 128 NEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRG 171
Score = 31.6 bits (72), Expect = 0.29
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 154 HVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G + + + EEE +E++ E EE EEE E EE +++E +E K K+ +
Sbjct: 116 KKGFSFKRPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSL 175
Query: 214 I 214
Sbjct: 176 T 176
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 32.3 bits (74), Expect = 0.13
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ E EEEE+ +EEE E + ++ K+K + K
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQK 160
Score = 31.5 bits (72), Expect = 0.19
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LE+ E EEEE+ +EEE E + E+ + +++ K+ +++
Sbjct: 119 LEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 31.5 bits (72), Expect = 0.24
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E+ E EEEE+ +EEE E + E+ ++K K+ +K
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 30.4 bits (69), Expect = 0.47
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ E EEEE+ +EEE E + E+ + K++ ++
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEM 158
Score = 30.0 bits (68), Expect = 0.77
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE-------KEEEEKKKKR 209
+LE EEEE+ +EEE E + E+ + KEE+E+ + R
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 27.7 bits (62), Expect = 4.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K +EEE E + E+ +++ +E +++E+EE + +
Sbjct: 127 EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 32.7 bits (75), Expect = 0.13
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 133 TLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEE 192
LNKK++ L + + +++ + +E E E+ EE + E E ++
Sbjct: 276 ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
Query: 193 EEEEEEEKEEEEKKKKRRK 211
E EE E+E EE++K+R K
Sbjct: 336 AEIEELEREIEEERKRRDK 354
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
GK EE EEE EE E + E + ++E +E E + ++ +R+ ++
Sbjct: 861 GKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
Score = 29.3 bits (66), Expect = 1.7
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+L E+E E+E +E +E+ + +E+ + E++ E KK +
Sbjct: 822 NRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
Score = 27.7 bits (62), Expect = 5.9
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E E ++EE EEE EE E + E + +K++ + ++
Sbjct: 854 KEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
Score = 27.3 bits (61), Expect = 8.0
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+++E +E+ + +E+ + E+E E ++EE EEE ++ +
Sbjct: 834 EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE 874
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 32.1 bits (73), Expect = 0.14
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++ E+ + + + E ++ +EK+EE+KK K++K +
Sbjct: 36 INSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKVPL 80
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 32.6 bits (74), Expect = 0.14
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E + ++ ++ E E+E E E+E R
Sbjct: 213 EPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHR 251
Score = 32.2 bits (73), Expect = 0.17
Identities = 4/35 (11%), Positives = 4/35 (11%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E E E
Sbjct: 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Score = 31.9 bits (72), Expect = 0.22
Identities = 5/38 (13%), Positives = 5/38 (13%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G EE E E
Sbjct: 109 GSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGP 146
Score = 31.5 bits (71), Expect = 0.28
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E + ++ ++ E E+E E E E
Sbjct: 210 EPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREG 244
Score = 31.5 bits (71), Expect = 0.29
Identities = 5/36 (13%), Positives = 5/36 (13%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L E E E E
Sbjct: 118 LSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPE 153
Score = 31.5 bits (71), Expect = 0.34
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E E + ++ ++ E E+E + E E
Sbjct: 209 DEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPERE 243
Score = 31.1 bits (70), Expect = 0.46
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E ++ + E+ EE E E
Sbjct: 151 PPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
Score = 30.7 bits (69), Expect = 0.49
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G E E ++ + E+ EE E
Sbjct: 145 GPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPT 182
Score = 30.7 bits (69), Expect = 0.51
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E + ++ ++ E E+E E + E R
Sbjct: 211 PGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHR 251
Score = 30.3 bits (68), Expect = 0.71
Identities = 4/35 (11%), Positives = 4/35 (11%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E
Sbjct: 107 PSGSAEELASGLSPENTSGSSPESPASHSPPPSPP 141
Score = 29.9 bits (67), Expect = 0.91
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
G+ + ++ ++ E E+E E E E
Sbjct: 212 GEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 29.9 bits (67), Expect = 0.99
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++ + E+ EE E E E
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPE 186
Score = 29.9 bits (67), Expect = 1.1
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++ + E+ EE E E E + +
Sbjct: 159 PNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Score = 29.6 bits (66), Expect = 1.1
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+E E + ++ ++ E E+E E E+
Sbjct: 207 PPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Score = 29.6 bits (66), Expect = 1.2
Identities = 6/38 (15%), Positives = 6/38 (15%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G E EE E E
Sbjct: 94 GSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESP 131
Score = 29.6 bits (66), Expect = 1.2
Identities = 8/38 (21%), Positives = 12/38 (31%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L+ E+ EE E E E + + E
Sbjct: 165 SFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSP 202
Score = 29.6 bits (66), Expect = 1.2
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++ + E+ EE E E
Sbjct: 151 PPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSE 184
Score = 29.6 bits (66), Expect = 1.4
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
++ + E+ EE E E E +
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188
Score = 29.6 bits (66), Expect = 1.4
Identities = 4/35 (11%), Positives = 4/35 (11%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSP 140
Score = 29.6 bits (66), Expect = 1.4
Identities = 4/34 (11%), Positives = 4/34 (11%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASH 134
Score = 29.2 bits (65), Expect = 1.8
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ + E+ EE E + E +
Sbjct: 154 SHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPD 188
Score = 29.2 bits (65), Expect = 1.8
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E+ EE E E E + + E
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSE 196
Score = 29.2 bits (65), Expect = 1.9
Identities = 4/35 (11%), Positives = 4/35 (11%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSP 136
Score = 29.2 bits (65), Expect = 1.9
Identities = 4/35 (11%), Positives = 4/35 (11%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHS 135
Score = 29.2 bits (65), Expect = 1.9
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ + E+ EE E E E +
Sbjct: 157 PSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPG 191
Score = 28.8 bits (64), Expect = 2.0
Identities = 3/34 (8%), Positives = 7/34 (20%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E ++ + E+
Sbjct: 141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDS 174
Score = 28.8 bits (64), Expect = 2.0
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + E+ EE E E E + + E
Sbjct: 160 NQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSET 197
Score = 28.8 bits (64), Expect = 2.1
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+E E + ++ ++ E E++ E ++
Sbjct: 206 SPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Score = 28.8 bits (64), Expect = 2.3
Identities = 3/35 (8%), Positives = 7/35 (20%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E ++ + E+
Sbjct: 140 PPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDS 174
Score = 28.8 bits (64), Expect = 2.5
Identities = 5/40 (12%), Positives = 6/40 (15%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G G EE E +
Sbjct: 94 GSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPAS 133
Score = 28.8 bits (64), Expect = 2.6
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ + E+ EE E E + +
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSP 190
Score = 28.4 bits (63), Expect = 2.9
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ +E E + ++ ++ + E+E + R+
Sbjct: 202 PPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREG 244
Score = 28.0 bits (62), Expect = 3.6
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++ + E+ EE +
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTS 183
Score = 28.0 bits (62), Expect = 4.4
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + E EE E+EE + E
Sbjct: 70 ESDTETAEESRHGEKEERGQGGPSGSGSESVGSPT 104
Score = 28.0 bits (62), Expect = 4.6
Identities = 4/35 (11%), Positives = 4/35 (11%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E
Sbjct: 104 TPSPSGSAEELASGLSPENTSGSSPESPASHSPPP 138
Score = 27.6 bits (61), Expect = 4.8
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E+ EE E E E + + E
Sbjct: 172 EDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPP 204
Score = 27.6 bits (61), Expect = 5.5
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E + + E + +E E +
Sbjct: 182 TSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQS 216
Score = 27.6 bits (61), Expect = 6.2
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ EE E E E + + E +
Sbjct: 172 EDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQS 206
Score = 27.2 bits (60), Expect = 6.5
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 156 GHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G R++ + E + E EE E+EE + E
Sbjct: 55 GPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSP 103
Score = 27.2 bits (60), Expect = 8.0
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ EE E E E + + E
Sbjct: 169 PSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPP 203
Score = 27.2 bits (60), Expect = 8.0
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+ EE E E E + + E
Sbjct: 170 SHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPP 204
Score = 26.9 bits (59), Expect = 8.8
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E E + + E + +E
Sbjct: 176 EEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDE 210
Score = 26.9 bits (59), Expect = 9.9
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E E + + E + +E
Sbjct: 179 EPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211
Score = 26.9 bits (59), Expect = 10.0
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE E E E + + E +
Sbjct: 173 DSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP 207
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 32.6 bits (74), Expect = 0.14
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E+EE+ E E E +E +E E + E E EEE
Sbjct: 224 EQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 31.8 bits (72), Expect = 0.24
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
++ ++ E E+EE+ ++++ E E+EE+ E E + +E
Sbjct: 202 EMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQE 237
Score = 31.5 bits (71), Expect = 0.31
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+EE+ E E E +E +E E + E E EEE
Sbjct: 223 NEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 31.5 bits (71), Expect = 0.35
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L EE ++ E E+EE+ ++++ E E+EE+ + E E
Sbjct: 199 LAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGE 234
Score = 31.1 bits (70), Expect = 0.51
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E E + E E EEE + ++++ +E + + E + R +
Sbjct: 242 QESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGARPAR 285
Score = 30.7 bits (69), Expect = 0.57
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E+EE+ ++++ E E+EE+ E E E +E +E + R
Sbjct: 210 EDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDR 249
Score = 30.7 bits (69), Expect = 0.63
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E+EE+ ++++ E E+EE+ E E E +E +E + R+
Sbjct: 210 EDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRE 250
Score = 30.7 bits (69), Expect = 0.65
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E+EE+ E E E +E +E E + E + EE
Sbjct: 222 ENEQEEQGEGEGEGQEGSAPQESEATDRESESGEE 256
Score = 30.3 bits (68), Expect = 0.70
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ E E+EE+ ++++ E E+EE+ E E E +E
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQE 237
Score = 30.3 bits (68), Expect = 0.72
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E+EE+ ++++ E E+EE+ E E E +E +
Sbjct: 208 ESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQ 242
Score = 29.9 bits (67), Expect = 0.92
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E EE ++ E E+EE+ ++++ E E+EE+ E E
Sbjct: 197 MELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGE 232
Score = 29.9 bits (67), Expect = 1.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
G E E+EE+ ++++ E E+EE+ E E E +
Sbjct: 204 GDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQ 236
Score = 29.1 bits (65), Expect = 2.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E+EE+ E E E +E +E E ++E E
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESES 253
Score = 28.8 bits (64), Expect = 2.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++++ E E+EE+ E E E +E +E E + E +
Sbjct: 216 DDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESE 252
Score = 28.4 bits (63), Expect = 3.5
Identities = 10/41 (24%), Positives = 27/41 (65%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ E E+EE+ ++++ E E+EE+ E + E ++ ++++
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESE 245
Score = 26.8 bits (59), Expect = 9.5
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E +E +E E + E E EEE + ++++
Sbjct: 231 GEGEGQEGSAPQESEATDRESESGEEEMVQSDQDD 265
Score = 26.8 bits (59), Expect = 9.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
E E E +E +E E + E E EEE +
Sbjct: 230 EGEGEGQEGSAPQESEATDRESESGEEEMVQ 260
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 32.4 bits (75), Expect = 0.14
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
LE+ EEE E++E+E E++++E E++EEE EE EE+ ++
Sbjct: 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 31.7 bits (73), Expect = 0.27
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L+ + E E+ EEE E++E+E E++++E E+KEEE ++ + +
Sbjct: 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 30.9 bits (71), Expect = 0.50
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE-EKKKKRRKNKI 214
+L ++EE + + E E+ EEE E++E+E E+K++E EKK++ + I
Sbjct: 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
Score = 30.5 bits (70), Expect = 0.69
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE ++E E ++E E +EE + + E EK+ + R+N++
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84
Score = 29.7 bits (68), Expect = 1.1
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
KLE E+ EEE E++E+E E++++E E++EEE EE +++ + +I
Sbjct: 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 32.5 bits (75), Expect = 0.15
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+LE++ EE E +E E+ +EE EE++E+ +E+E++ ++ ++
Sbjct: 531 ELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 31.7 bits (73), Expect = 0.29
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E E++ EE E +E E+ +EE EE++E+ +EEE+K + + +
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA 575
Score = 29.8 bits (68), Expect = 1.1
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E +E E+ +EE EE++E+ +EEE++ E+ E+E ++ ++ K
Sbjct: 538 EAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583
Score = 27.1 bits (61), Expect = 7.5
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+LEE++E+ +EEE++ EE E+E ++ +E +KE +E K+ R
Sbjct: 552 ELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594
Score = 27.1 bits (61), Expect = 9.3
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
L +E E+ +EE EE++E+ +EEE++ EE EKE ++ K+ +K
Sbjct: 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 31.6 bits (72), Expect = 0.15
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E E +E+ ++E E+EE +++ EE++ K+EE+ KKR K
Sbjct: 48 EYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAK 89
Score = 30.8 bits (70), Expect = 0.27
Identities = 14/46 (30%), Positives = 33/46 (71%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LE +E+ ++E E+EE +++ EE++ ++EE+ ++ K++++K K
Sbjct: 52 LELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKK 97
Score = 29.2 bits (66), Expect = 0.98
Identities = 15/46 (32%), Positives = 35/46 (76%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L +E+ ++E E+EE +++ EE++ ++EE+ K+ +++KK++K K
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKK 98
Score = 27.7 bits (62), Expect = 2.5
Identities = 15/45 (33%), Positives = 34/45 (75%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E+ ++E E+EE +++ EE++ ++EE+ +K + +KKK++K K
Sbjct: 55 MDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKK 99
Score = 27.3 bits (61), Expect = 4.1
Identities = 14/44 (31%), Positives = 34/44 (77%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ ++E E+EE +++ EE++ ++EE+ +++ + +KKK+++K K
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKK 100
Score = 26.5 bits (59), Expect = 7.0
Identities = 14/43 (32%), Positives = 33/43 (76%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E E+EE +++ EE++ ++EE+ ++ K +++K+KK++K K
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKK 102
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 32.6 bits (74), Expect = 0.15
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E E++ EEE E ++++EE+ KE+E KK K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLK 37
Score = 31.0 bits (70), Expect = 0.46
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
G E E E++ EEE E ++++EE+ +E+E K+ + +K+ +
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAK 44
Score = 30.3 bits (68), Expect = 0.78
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E++ EEE E ++++EE+ +EKE ++ K +++ K
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAK 44
Score = 29.1 bits (65), Expect = 2.4
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E++ EEE E ++++EE+ +E+E +K + +K+ + K +
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
Score = 28.7 bits (64), Expect = 2.7
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E E++ EEE E ++++EE+ +E+E ++ + +K K K+
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
Score = 28.7 bits (64), Expect = 3.1
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E++ EEE E ++++EE+ +E+E ++ + ++E K K + +
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQA 52
Score = 28.3 bits (63), Expect = 3.3
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E++ EEE E ++++EE+ +E+E ++ K +++ K + + +
Sbjct: 7 EAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQ 50
Score = 27.9 bits (62), Expect = 5.3
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
G E E++ EEE E ++++EE+ +E+E ++ + +K+ K +
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAK 46
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 32.2 bits (74), Expect = 0.15
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+E E +E+ EEE + + EEE + ++
Sbjct: 14 FDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQR 50
Score = 31.5 bits (72), Expect = 0.25
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
L E+ + +E E +E+ EEE + + +EE +
Sbjct: 8 LNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 31.1 bits (71), Expect = 0.32
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ + +E E +E+ EEE + + EE+ + +R
Sbjct: 11 DADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQR 50
Score = 31.1 bits (71), Expect = 0.42
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E+ + +E E +E+ EEE + + EEE
Sbjct: 7 DLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEE 41
Score = 30.7 bits (70), Expect = 0.45
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K+ + E+ + +E E +E+ EEE + EE
Sbjct: 4 KVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEE 40
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 31.5 bits (70), Expect = 0.16
Identities = 25/35 (71%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEE E EEE EEE E EEE EEE E EE EEE
Sbjct: 65 EEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEE 99
Score = 30.7 bits (68), Expect = 0.34
Identities = 23/34 (67%), Positives = 25/34 (73%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E EEEEE E EEE EEE E EEE EEE E EE
Sbjct: 61 DDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
Score = 29.5 bits (65), Expect = 0.86
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
++E EEEEE E EEE EEE E EEE EEE + EE
Sbjct: 61 DDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
Score = 29.2 bits (64), Expect = 0.87
Identities = 23/35 (65%), Positives = 25/35 (71%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EEEEE E EEE EEE E EEE EEE E E+ EE+
Sbjct: 65 EEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEE 99
Score = 29.2 bits (64), Expect = 1.1
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ ++E EEEEE E EEE EEE E EEE EE+ E E
Sbjct: 59 DPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPE 93
Score = 28.8 bits (63), Expect = 1.2
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 156 GHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
G + G + ++E EEEEE E EEE EEE E EEE EEE
Sbjct: 42 GKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEE 89
Score = 28.8 bits (63), Expect = 1.5
Identities = 23/35 (65%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE E EEE EEE E EEE EEE E EE +EE E
Sbjct: 67 EEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPE 101
Score = 28.4 bits (62), Expect = 1.6
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E EEEEE E EEE EEE E EEE EEE E +E E++
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEE 99
Score = 28.4 bits (62), Expect = 1.8
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE EEE E EEE EEE E EE EEE E + E E
Sbjct: 73 EEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPE 107
Score = 28.0 bits (61), Expect = 2.8
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEE EEE E EEE EEE E EE EEE + E E
Sbjct: 71 EPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE 105
Score = 27.6 bits (60), Expect = 3.3
Identities = 22/37 (59%), Positives = 24/37 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E E EEE EEE E EEE EEE E EE EE+ E E +
Sbjct: 69 EPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE 105
Score = 27.6 bits (60), Expect = 3.4
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EE E EEE EEE E EEE EEE E EE E+E E + +
Sbjct: 68 EEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE 105
Score = 27.6 bits (60), Expect = 3.4
Identities = 21/34 (61%), Positives = 21/34 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EE E EEE EEE E EE EEE E E E E E E
Sbjct: 78 EEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 27.6 bits (60), Expect = 3.7
Identities = 21/33 (63%), Positives = 21/33 (63%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EEE E EEE EEE E EE EEE E E E E E
Sbjct: 77 EEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPE 109
Score = 27.2 bits (59), Expect = 4.5
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE E EEE EEE E EE EEE E E E + E E
Sbjct: 77 EEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 26.5 bits (57), Expect = 7.6
Identities = 21/35 (60%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EEE E EEE EEE E EE EEE E E + E E
Sbjct: 75 EGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPE 109
Score = 26.5 bits (57), Expect = 8.5
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
G + + ++E EEEEE E EEE EEE E E+E EE+
Sbjct: 51 GADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEE 89
Score = 26.5 bits (57), Expect = 9.0
Identities = 20/33 (60%), Positives = 20/33 (60%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EEE EEE E EE EEE E E E E E E E E
Sbjct: 83 EEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPE 115
Score = 26.1 bits (56), Expect = 9.5
Identities = 20/35 (57%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEE EEE E EE EEE E E E E E E + E E
Sbjct: 83 EEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPE 117
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 32.0 bits (73), Expect = 0.16
Identities = 11/35 (31%), Positives = 28/35 (80%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E E ++ ++++++ EEE ++ ++++EEEE+K+K
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 30.5 bits (69), Expect = 0.59
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 126 VNGVQPPTLNKKLRVLVDFS-SPNIAKEMHVGHLSRSLCHGW--GKLEEEEEEEEEEEEE 182
N V +L+ L D S KE+ + ++ W K + +++ ++ EE
Sbjct: 51 SNSVPSLSLSSTASSLSDSSTYSRSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEE 110
Query: 183 EEEEEEEEEEEEEEEEEKEEEEKKKK--RRKNK 213
++++E E+E EE E ++ +EK ++ R+K +
Sbjct: 111 KQKQEREKEREEAELRQRLAKEKYEEWCRQKAQ 143
Score = 30.1 bits (68), Expect = 0.74
Identities = 14/46 (30%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE--EKKKKRRK 211
KL++++++ EEE ++ ++++EEEE +++ EE ++ + K+R K
Sbjct: 191 KLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 30.1 bits (68), Expect = 0.82
Identities = 9/35 (25%), Positives = 28/35 (80%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E E ++ ++++++ EEE ++ ++++EEE++K++
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 28.9 bits (65), Expect = 1.6
Identities = 10/39 (25%), Positives = 29/39 (74%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E ++ ++++++ EEE ++ ++++EEEE K++ E+ ++
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 28.5 bits (64), Expect = 2.5
Identities = 13/43 (30%), Positives = 31/43 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E ++ ++++++ EEE ++ ++++EEEE +++ EE +K KN
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKN 230
Score = 28.5 bits (64), Expect = 2.6
Identities = 8/43 (18%), Positives = 33/43 (76%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+EE ++ +E E ++ ++++++ EEE +++++++++++R++
Sbjct: 176 SQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQ 218
Score = 28.5 bits (64), Expect = 2.6
Identities = 10/43 (23%), Positives = 31/43 (72%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE ++ +E E ++ ++++++ EEE ++ +++++++ RK K
Sbjct: 177 QEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 27.4 bits (61), Expect = 4.8
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LEE++++E E+E EE E + +E+ EE +++ ++ K+R K
Sbjct: 107 LLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKH 153
Score = 27.0 bits (60), Expect = 6.4
Identities = 10/42 (23%), Positives = 32/42 (76%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE ++ +E E ++ ++++++ EEE ++ K+++E++++++K
Sbjct: 178 EEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 26.6 bits (59), Expect = 9.2
Identities = 8/43 (18%), Positives = 29/43 (67%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EE ++ +E E ++ ++++++ EEE K+ ++++++ + +
Sbjct: 177 QEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 32.2 bits (74), Expect = 0.17
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EE+EEE +E EEE + EEE+ E ++K++RR+ +
Sbjct: 33 KAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGR 73
Score = 32.2 bits (74), Expect = 0.17
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
K + EE+EEE +E EEE + EEEE+E + K+++R
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 31.8 bits (73), Expect = 0.23
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+++ EE+EEE +E EEE + EEEE E++ +E++++ R
Sbjct: 31 RIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRA 74
Score = 31.0 bits (71), Expect = 0.41
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE++ + EE+EEE +E EEE + EEEE+++KR++ +
Sbjct: 27 EEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERR 70
Score = 31.0 bits (71), Expect = 0.41
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+EE+EE E EEE EE E EEE E + + EEE+++
Sbjct: 297 IEEKEERRAAEREEELEEGERLREEEAERQARIEEERQRL 336
Score = 29.5 bits (67), Expect = 1.3
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
++EE E+E EE +E + +EE E +E +KE+EE +K+RR+
Sbjct: 190 QQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQK 232
Score = 29.1 bits (66), Expect = 1.7
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE +EE EEE E E E++ E+EE E+E EK++ +R
Sbjct: 247 EERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLE 288
Score = 28.3 bits (64), Expect = 2.9
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E++ + EE+EEE +E EEE + E+EE E+K+K + +
Sbjct: 28 EKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 28.3 bits (64), Expect = 3.2
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE +EE EEE E E E++ E+EE E++ E+++ KR +++
Sbjct: 247 EERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHR 290
Score = 28.0 bits (63), Expect = 3.8
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ +EEE+E E EEE + E + E+ E EEE E E E+K+++ +
Sbjct: 139 ERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKER 182
Score = 27.2 bits (61), Expect = 6.2
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E+ +EE EE +E E+ +E E +EE+E E +EK++K++K
Sbjct: 84 EKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKK 125
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 31.6 bits (72), Expect = 0.18
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L EE EE E + EE E+E +E++E +E +K + +K
Sbjct: 16 LHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDKT 61
Score = 28.5 bits (64), Expect = 1.9
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE EE E + EE E+E KE+EE + +
Sbjct: 14 ETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKS 57
Score = 27.0 bits (60), Expect = 6.1
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
L EE EE E + EE E+E +E+EE +E E+ + K
Sbjct: 20 SLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDK 60
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 31.7 bits (72), Expect = 0.18
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
G LE EE E E E+E EEEEEE+ + E E
Sbjct: 57 GGLEVSEETEAEVEDEGGEEEEEEDADVETE 87
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 32.1 bits (74), Expect = 0.18
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
L EE+ E EE E EEEEE++EE++
Sbjct: 60 SLSLEEQRERLEELAPELLEEEEEKKEEKKGLPP 93
Score = 32.1 bits (74), Expect = 0.19
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EE EE+ E EE E EEEEEK+EE+K
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 31.7 bits (73), Expect = 0.24
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
LEE+ E EE E EEEEE++EE++ EK K
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 30.6 bits (70), Expect = 0.61
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EE EE+ E EE E EEEE+++EEKK
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 30.2 bits (69), Expect = 0.90
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE EE+ E EE E EEE+E++E+KK
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 29.4 bits (67), Expect = 1.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE EE+ E EE E EEEEE+KEE++
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 29.0 bits (66), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
+LEE E EEEEE++EE++ E+ K
Sbjct: 69 RLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 28.7 bits (65), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE EE+ E EE E EE+EE++++KK
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 28.3 bits (64), Expect = 3.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EE EE+ E EE E EEEEE+++E++
Sbjct: 55 VEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 27.5 bits (62), Expect = 5.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE EE+ E EE E EEEE+KK+ +K
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKK 89
Score = 27.5 bits (62), Expect = 6.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE EE+ E EE E E+EEE+K++K+
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 32.3 bits (73), Expect = 0.19
Identities = 12/58 (20%), Positives = 18/58 (31%)
Query: 148 NIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
H G+L + E EE +EE+ E E+ EE +
Sbjct: 336 YQPPGWHEPLFEVGPETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGG 393
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEE 190
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 171 EEEEEEEEEEEEEEEEEEEEE 191
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 172 EEEEEEEEEEEEEEEEEEEEE 192
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 173 EEEEEEEEEEEEEEEEEEEEE 193
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 174 EEEEEEEEEEEEEEEEEEEEE 194
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 175 EEEEEEEEEEEEEEEEEEEEE 195
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 176 EEEEEEEEEEEEEEEEEEEEE 196
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 177 EEEEEEEEEEEEEEEEEEEEE 197
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 178 EEEEEEEEEEEEEEEEEEEEE 198
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.21
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 179 EEEEEEEEEEEEEEEEEEEEE 199
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.4 bits (64), Expect = 0.77
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 185 EEEEEEEEEEEEEEEKEEEE 204
EEE++EEEE+EEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 28.4 bits (64), Expect = 0.93
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 184 EEEEEEEEEEEEEEEEKEEEE 204
EEE++EEEEE+EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.0 bits (63), Expect = 1.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 182 EEEEEEEEEEEEEEEEEEKEE 202
EEE++EEEEEEE+++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.0 bits (63), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 181 EEEEEEEEEEEEEEEEEEEKE 201
EEE++EEEEEEEE +
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 1.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 183 EEEEEEEEEEEEEEEEEKEEE 203
EEE++EEEEEE+E++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 32.3 bits (74), Expect = 0.21
Identities = 7/31 (22%), Positives = 22/31 (70%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEE 196
K + E++++ E ++ E+E++E++E+++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 31.6 bits (72), Expect = 0.35
Identities = 7/31 (22%), Positives = 23/31 (74%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
K + + E++++ E ++ E+E++E++E+++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.4 bits (69), Expect = 0.87
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + E++++ E ++ E+E++E +E++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDD 1387
Score = 30.0 bits (68), Expect = 1.1
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.6 bits (67), Expect = 1.4
Identities = 6/29 (20%), Positives = 21/29 (72%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + E++++ E ++ E+E++E+ E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.2 bits (66), Expect = 1.9
Identities = 6/29 (20%), Positives = 21/29 (72%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ + E++++ E ++ E+E++E++E ++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 28.1 bits (63), Expect = 3.9
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 14/61 (22%)
Query: 168 KLEEEEEEEEEEEEE--------------EEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KL E E++E+E E+ ++ EE EE+EE EE+E +E++ K + K K
Sbjct: 1106 KLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGK 1165
Query: 214 I 214
Sbjct: 1166 A 1166
Score = 28.1 bits (63), Expect = 4.2
Identities = 5/29 (17%), Positives = 22/29 (75%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ + E++++ E ++ E+E++E++++++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 27.7 bits (62), Expect = 6.3
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ + E++++ E ++ E+E+ E++E
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDED 1386
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 31.3 bits (71), Expect = 0.22
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 157 HLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+S KL EEE++ E ++++ EE E + + EE + +E
Sbjct: 64 TTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 30.5 bits (69), Expect = 0.49
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++E+ EEE++ E ++++ EE E + + EE ++
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Score = 30.1 bits (68), Expect = 0.55
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ EEE++ E ++++ EE E + + EE + +E + I
Sbjct: 74 EKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDI 118
Score = 29.3 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K +E+ EEE++ E ++++ EE E + + EE + ++
Sbjct: 71 KDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K + EEE++ E ++++ EE E + + EE +E
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.3 bits (71), Expect = 0.22
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ E EE EEEE EE EE EE
Sbjct: 151 KAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 30.9 bits (70), Expect = 0.29
Identities = 14/33 (42%), Positives = 14/33 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E EE EEEE EE EE EE E
Sbjct: 154 EAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 30.5 bits (69), Expect = 0.38
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ E EE EEEE EE EE EE
Sbjct: 151 KAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 30.5 bits (69), Expect = 0.40
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
K E EE EEEE EE EE E+ E
Sbjct: 151 KAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 30.5 bits (69), Expect = 0.42
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E++ E EE EEEE EE EE EE
Sbjct: 149 EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 30.1 bits (68), Expect = 0.60
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K E EE EEEE EE EE +E E
Sbjct: 150 KKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 29.0 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E E++ E EE EEEE EE EE
Sbjct: 142 ARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPA 181
Score = 27.4 bits (61), Expect = 5.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E++ E EE EEEE EE EE ++
Sbjct: 149 EKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEES 184
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 31.7 bits (72), Expect = 0.22
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+LE+ E+ ++ E+ ++ EE++++ EE K ++ + K +
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKA 136
Score = 30.2 bits (68), Expect = 0.66
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++E E+ E+ ++ E+ ++ EE++K+ EE K K+
Sbjct: 89 ARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAA 130
Score = 30.2 bits (68), Expect = 0.86
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KLE++ EE E++ E+ ++E E+ E+ ++ E+ K+ + K
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEK 117
Score = 28.3 bits (63), Expect = 3.0
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EE++++ EE + ++ E + + E E E+K +EE KK+
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQ 151
Score = 27.9 bits (62), Expect = 3.8
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K EE + ++ E + + E E E++ +EE +++ EEE K K
Sbjct: 119 KQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAK 159
Score = 27.9 bits (62), Expect = 3.9
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ ++ E+ ++ EE++++ EE + ++ E + K + + K
Sbjct: 98 AAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
Score = 27.9 bits (62), Expect = 4.1
Identities = 8/46 (17%), Positives = 30/46 (65%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+++++++ ++E+E +++ E++ EE E++ E+ +K+ ++
Sbjct: 52 ANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQR 97
Score = 27.5 bits (61), Expect = 4.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E + + E E E++ +EE +++ EEE + K E KKK + K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Score = 27.5 bits (61), Expect = 5.4
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +EE +++ EEE + + E +++ E +++ E E K K K K
Sbjct: 143 KAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAK 188
Score = 27.5 bits (61), Expect = 5.6
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E++ E+ ++E E+ E+ ++ E+ ++ E+K+K
Sbjct: 79 EAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 27.5 bits (61), Expect = 6.0
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 168 KLEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEKEEEEKKKK 208
+ +E E+ E+ ++ E+ EE++++ EE + K+ E K K
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Score = 27.5 bits (61), Expect = 6.2
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EE++++ EE + ++ E + + E E E++ +EE KK+ + K
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
Score = 27.1 bits (60), Expect = 6.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E E E++ +EE +++ EEE + + E +K+ E KKK
Sbjct: 134 AKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175
Score = 27.1 bits (60), Expect = 7.0
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E E E++ +EE +++ EEE + + E ++K E KKK + K
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAK 180
Score = 27.1 bits (60), Expect = 7.2
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K E+ ++ EE++++ EE + ++ E + + + E EKK K
Sbjct: 105 KQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAK 145
Score = 27.1 bits (60), Expect = 7.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K EEE + + E +++ E +++ E E + K E + K K + K
Sbjct: 150 KQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAK 195
Score = 27.1 bits (60), Expect = 8.7
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ EE + ++ E + + E E E++ +EE +K+ EE+ K +
Sbjct: 120 QAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAA 161
Score = 26.7 bits (59), Expect = 9.3
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E+ ++ EE++++ EE + ++ E + + E E +KK + + K
Sbjct: 106 QAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAK 149
Score = 26.7 bits (59), Expect = 9.4
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E +++ E++ EE E++ E+ ++E E+ E+ K+
Sbjct: 68 ERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQ 106
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 31.7 bits (72), Expect = 0.22
Identities = 12/42 (28%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK-KRR 210
+EE EEE E+++ E ++ ++++E++++EE++ ++ K R
Sbjct: 78 DEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKAR 119
Score = 30.1 bits (68), Expect = 0.79
Identities = 11/36 (30%), Positives = 25/36 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+EE EEE E+++ E ++ ++++E++++EEK
Sbjct: 76 SNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEK 111
Score = 30.1 bits (68), Expect = 0.79
Identities = 11/42 (26%), Positives = 27/42 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EEE E+++ E ++ ++++E++++EEK+ E K +
Sbjct: 78 DEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKAR 119
Score = 29.0 bits (65), Expect = 1.6
Identities = 9/38 (23%), Positives = 26/38 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E +EE EEE E+++ E ++ +++++++++++K
Sbjct: 74 SESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEK 111
Score = 28.6 bits (64), Expect = 2.1
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ E +EE EEE E+++ E ++ +K++E++++
Sbjct: 72 QASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQ 108
Score = 27.8 bits (62), Expect = 4.2
Identities = 11/39 (28%), Positives = 27/39 (69%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EEE E+++ E ++ ++++E++++EE++ E K + R
Sbjct: 83 GEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDR 121
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 31.2 bits (70), Expect = 0.23
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
KL++E EE E++ E+ EE E++ EE E+E+E EE+K
Sbjct: 26 KLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQK 64
Score = 28.2 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
++ E++ E+ EE E++ EE E+EEE EE++ +EE
Sbjct: 33 EIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
Score = 27.4 bits (60), Expect = 4.7
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ EE E++ EE E+EEE EE++ +EE + +E K KN
Sbjct: 41 DIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKN 83
Score = 27.4 bits (60), Expect = 5.5
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+LE++ EE E+EEE EE++ +EE + +E K +EK
Sbjct: 45 ELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEK 82
Score = 27.0 bits (59), Expect = 5.7
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++E EE E++ E+ EE E++ EE E++EE E++K
Sbjct: 28 KKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQK 64
Score = 27.0 bits (59), Expect = 5.9
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E++ E+ EE E++ EE E+EEE EE++ KEE + + K+
Sbjct: 36 EQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKS 78
Score = 27.0 bits (59), Expect = 6.4
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++EE E++ E+ EE E++ EE E+EEE E+++ +++
Sbjct: 30 EVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
Score = 26.6 bits (58), Expect = 7.6
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ ++E EE E++ E+ EE E++ EE ++EEE ++++ K +I
Sbjct: 25 EKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEI 69
Score = 26.6 bits (58), Expect = 7.9
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E+ ++E EE E++ E+ EE E++ EE E+E++ + +K
Sbjct: 23 EREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQK 64
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.1 bits (73), Expect = 0.24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE E E + EE+ EEE+ E + + K E EK++++ +N
Sbjct: 264 EEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQN 305
Score = 31.8 bits (72), Expect = 0.32
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LEE+ E E+ +EE E E + EE+ EEEK E + + K ++
Sbjct: 251 LEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEV 296
Score = 29.8 bits (67), Expect = 1.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE E E + EE+ EEE+ E + + + E E++++K +
Sbjct: 264 EEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE+ +EE E E + EE+ EEE+ E ++ + + + ++R+ K+
Sbjct: 257 ELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKL 303
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 31.7 bits (73), Expect = 0.25
Identities = 8/43 (18%), Positives = 9/43 (20%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+EEE E E E E E
Sbjct: 76 IEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPA 118
Score = 30.9 bits (71), Expect = 0.41
Identities = 8/41 (19%), Positives = 8/41 (19%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAP 117
Score = 28.2 bits (64), Expect = 3.1
Identities = 6/41 (14%), Positives = 6/41 (14%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E E E E E E
Sbjct: 79 EGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAA 119
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.9 bits (72), Expect = 0.26
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E++E+ E+ EE +E EE E+ K +EE ++
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPE 4095
Score = 31.9 bits (72), Expect = 0.32
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
L+E+ ++++ + E++E+ E+ EE +E EE +
Sbjct: 4043 LDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080
Score = 31.1 bits (70), Expect = 0.53
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
LE+++ +E+E+EEE ++ ++E + + +E +
Sbjct: 3945 LEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 30.7 bits (69), Expect = 0.69
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ ++++ + E++E+ E+ EE +E +E E K +
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEEL 4088
Score = 30.7 bits (69), Expect = 0.74
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K+ E+ EE +E EE E+ + +EE E+ E E++
Sbjct: 4060 EKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 30.4 bits (68), Expect = 0.80
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E+ E+ EE +E EE E+ + +EE E+ E
Sbjct: 4058 DDEKMNEDGFEENVQENEESTEDGVKSDEELEQGE 4092
Score = 30.4 bits (68), Expect = 0.92
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+++ +E+E+EEE ++ ++E + + +E +
Sbjct: 3946 EDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 29.6 bits (66), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+ E+ EE +E EE E+ + +EE E+ E +
Sbjct: 4060 EKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPE 4095
Score = 29.2 bits (65), Expect = 2.0
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+E+ ++++ + E++E+ E+ EE ++ EE +
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080
Score = 29.2 bits (65), Expect = 2.1
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E+ ++++ + E++E+ E+ EE +E EE +
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080
Score = 29.2 bits (65), Expect = 2.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E++E+ E+ EE +E EE E+ + +EE ++
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQ 4090
Score = 28.8 bits (64), Expect = 2.5
Identities = 8/37 (21%), Positives = 25/37 (67%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E++ + E+++ +E+E+EEE ++ ++E + + ++
Sbjct: 3939 EDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Score = 28.8 bits (64), Expect = 2.9
Identities = 7/34 (20%), Positives = 22/34 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E+++ +E+E+EEE ++ ++E + + ++ +
Sbjct: 3946 EDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 28.8 bits (64), Expect = 3.1
Identities = 8/38 (21%), Positives = 25/38 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K ++ + E+++ +E+E+EEE ++ ++E + + ++
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Score = 28.4 bits (63), Expect = 3.2
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E +EE + E++E ++E+ EE +E+ ++++
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDD 4051
Score = 28.4 bits (63), Expect = 3.3
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +E+E+EEE ++ ++E + + +E + E
Sbjct: 3949 DRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPE 3983
Score = 28.4 bits (63), Expect = 3.8
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E+E+EEE ++ ++E + + +E + E E
Sbjct: 3948 KDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
Score = 28.4 bits (63), Expect = 3.9
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 170 EEEEEEE--EEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E+ E+ EE +E EE E+ + +EE E+ E E
Sbjct: 4059 DEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPE 4095
Score = 28.0 bits (62), Expect = 4.5
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E+ EE +E+ ++++ + E++EK E+
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNED 4065
Score = 28.0 bits (62), Expect = 5.0
Identities = 9/39 (23%), Positives = 26/39 (66%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E++ + E+++ +E+E+EEE ++ ++E + ++N
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN 3976
Score = 27.3 bits (60), Expect = 8.2
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E +EE + E++E ++E+ EE +E+ ++++
Sbjct: 4017 DENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDD 4051
Score = 27.3 bits (60), Expect = 8.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+ EE +E EE E+ + +EE E+ + E++
Sbjct: 4062 MNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 27.3 bits (60), Expect = 8.4
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEE------------EEEEEEEKEEEEKKKKRRKNK 213
G ++ E E + EEE ++ +EE E+ +E EE+ + +K+
Sbjct: 3866 GVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSN 3924
Score = 26.9 bits (59), Expect = 9.9
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E++ + E+++ +E+E+EEE ++ ++E + + N
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 3978
Score = 26.9 bits (59), Expect = 10.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E+ E + +E++ + E+++ +E+E EEE
Sbjct: 3925 EQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMS 3960
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 31.5 bits (72), Expect = 0.26
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
L+E+ EE + EEE E +E E++ + E E++K+
Sbjct: 193 ALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEE 234
Score = 29.6 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+L + EEE E +E E++ E E EKEE KK + +
Sbjct: 200 ELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEK 242
Score = 28.8 bits (65), Expect = 2.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE E +E+ EE + EEE E KE +K+ R + +
Sbjct: 186 EEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFE 229
Score = 28.5 bits (64), Expect = 2.6
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L + EEE E +E E++ E E E++E +K +++ + ++
Sbjct: 202 LSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQEL 247
Score = 28.5 bits (64), Expect = 3.3
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E +E E++ E E E+EE ++ EE+ +++ R+ +
Sbjct: 207 EELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEA 253
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 31.9 bits (72), Expect = 0.27
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E+ ++E E++EE++ EEEE E++E ++ R K
Sbjct: 142 NESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKF 185
Score = 31.5 bits (71), Expect = 0.31
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E E+ ++E E++EE++ EEEE EE+E ++ + K
Sbjct: 140 LFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 31.5 bits (71), Expect = 0.32
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L E E E+ ++E E++EE++ EEEE +E+E ++ R+ K
Sbjct: 140 LFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKK 184
Score = 31.1 bits (70), Expect = 0.40
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E+ ++E E++EE++ EEEE EE+E E+ ++K+
Sbjct: 145 ESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSG 189
Score = 30.3 bits (68), Expect = 0.79
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
LE+ ++E E++EE++ EEEE EE+E E+ E+K K
Sbjct: 148 LEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDK 187
Score = 30.3 bits (68), Expect = 0.85
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + E E E+ ++E E++EE++ EE+E E+K+ +
Sbjct: 136 DEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQAT 180
Score = 30.3 bits (68), Expect = 0.87
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E+ ++E E++EE++ EEEE EE++ E+ ++++ +K
Sbjct: 143 ESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDK 187
Score = 29.2 bits (65), Expect = 1.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
KL++ E E+ + + + E+ ++EEEEEE++ E++
Sbjct: 92 AKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Score = 29.2 bits (65), Expect = 1.7
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E + E E E+ ++E E++EE++ +EEE ++K +
Sbjct: 135 EDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQ 178
Score = 29.2 bits (65), Expect = 2.0
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E E E+ ++E E++EE++ EEE+ EEK+ + +
Sbjct: 138 ADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATR 181
Score = 28.8 bits (64), Expect = 2.4
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++E+E + E E E+ ++E E++EE+K EEE+ + +++
Sbjct: 132 IDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESV 176
Score = 28.0 bits (62), Expect = 3.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++ E E+ + + + E+ ++EEEEEE E E +
Sbjct: 94 LQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Score = 27.6 bits (61), Expect = 5.9
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
L + ++ E E+ + + + E+ ++EEEE+E+E + +
Sbjct: 90 VLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Score = 27.3 bits (60), Expect = 6.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+EE++E+E++++EEE E ++ + +E E + K
Sbjct: 295 EEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 31.6 bits (72), Expect = 0.27
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LEE ++ +E EE E+ E+ E+ E +E+ KK K+
Sbjct: 452 LEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKV 497
Score = 31.6 bits (72), Expect = 0.27
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EE E+ E+ E+ E +EE +KE +K KK
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 29.7 bits (67), Expect = 1.3
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ EE E+ E+ E+ E +EE ++E ++ K+ E
Sbjct: 466 SILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Score = 29.3 bits (66), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E EE E+ E+ E+ E +EE K+E KK K+
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L EE E+ E+ E+ E +EE ++E +K ++
Sbjct: 464 ALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKI 500
Score = 28.9 bits (65), Expect = 2.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
K EE E+ E+ E+ E +EE ++E ++ KK
Sbjct: 460 VKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 28.5 bits (64), Expect = 2.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E EE E+ E+ E+ E +E+ ++E KK +K
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 28.5 bits (64), Expect = 3.5
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E EE E+ E+ E+ E +EE +++ ++ KK
Sbjct: 459 IVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 27.7 bits (62), Expect = 6.1
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ +E EE E+ E+ E+ E ++E +++ K+ K
Sbjct: 456 KQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIP 501
Score = 27.0 bits (60), Expect = 8.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ ++ +E EE E+ E+ E+ E +EE +K+ ++ KI
Sbjct: 454 EFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKI 500
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 31.6 bits (71), Expect = 0.28
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
H W K E E+ ++E+E EEEEE + E E + E+EK KK+
Sbjct: 184 HLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKK 229
Score = 28.5 bits (63), Expect = 2.9
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E EEEE E E +E+E+E+ + + K + + KK RK I
Sbjct: 241 METSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHI 284
Score = 28.1 bits (62), Expect = 3.3
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ +E+E EEEEE + E E ++ E+E+ +K++ EK
Sbjct: 195 KRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEK 233
Score = 27.7 bits (61), Expect = 4.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++ E E EEEE E E +E+E+E+ K + K+K
Sbjct: 237 SDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKT 273
Score = 27.7 bits (61), Expect = 5.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++ E E EEEE E E +E E+E+ K K RK K
Sbjct: 237 SDQSMETSESEEEESSESESDEDEDEDNKGKIRKRK 272
Score = 27.7 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E E EEEE E E +E+E+E+ + + + K ++ KK ++ I
Sbjct: 240 SMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHI 286
Score = 27.7 bits (61), Expect = 5.3
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
LE+ ++ E E EEEE E E +E+E+++ + K +KR+ +
Sbjct: 231 LEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTD 274
Score = 27.3 bits (60), Expect = 7.1
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E+ ++E+E EEEEE + E E ++ EK+K ++K
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKK 229
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 31.7 bits (72), Expect = 0.29
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEE 192
+ E +EEE EEEEE + EE E E
Sbjct: 398 RVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 31.4 bits (71), Expect = 0.29
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKE 201
E +EEE EEEEE + EE E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEME 423
Score = 31.0 bits (70), Expect = 0.45
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEE 196
++ E +EEE EEEEE + EE E E
Sbjct: 396 VKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 30.6 bits (69), Expect = 0.66
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEE 202
E +EEE EEEEE + EE E E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 30.2 bits (68), Expect = 0.70
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKE 201
E +EEE EEEEE + EE E E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 30.2 bits (68), Expect = 0.71
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEE 197
E +EEE EEEEE + EE E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEME 423
Score = 29.8 bits (67), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L+E+ + E +EEE EEEEE + E+ E E
Sbjct: 388 LKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 29.1 bits (65), Expect = 2.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEK 205
E +EEE EEEEE + EE E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEM 422
Score = 28.7 bits (64), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKK 206
E +EEE EEEEE + EE +
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEM 422
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 31.7 bits (72), Expect = 0.30
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEE 195
LE++EE+EE+ EE +E+EEE+ E+E
Sbjct: 52 LEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.9 bits (70), Expect = 0.49
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEE 196
+L E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 50 QLLEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.2 bits (68), Expect = 0.93
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEE 197
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.2 bits (68), Expect = 0.93
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEE 198
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.2 bits (68), Expect = 0.93
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEE 199
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.4 bits (66), Expect = 1.5
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEE 204
E++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.6 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEE 203
E++EE+EE+ EE +E+EEE+ ++E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.6 bits (64), Expect = 2.5
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKE 201
E++EE+EE+ EE +E+EEE+ E++
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 3.9
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEE 202
E++EE+EE+ EE +E+EEE+ E E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.5 bits (61), Expect = 7.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEE 191
K E+EE+ EE +E+EEE+ E+E
Sbjct: 54 QKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.1 bits (71), Expect = 0.30
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 168 KLEEEEEEEEEEEEEEEE--EEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KL++E EE ++ E + E+ ++ EE EE + EE K+ ++ K
Sbjct: 73 KLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELK 120
Score = 29.9 bits (68), Expect = 0.58
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L++ E + + E+ ++ EE EE E EE ++ EK+ K+ K +
Sbjct: 80 ELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
Score = 28.0 bits (63), Expect = 2.6
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++E+ ++ EE EE E EE ++ E+E ++ K E EK +K
Sbjct: 91 QIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKYEK 131
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 31.3 bits (71), Expect = 0.32
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 15/63 (23%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEE---------------EEEEEEKEEEEKKKK 208
G + E ++ +EE+EE E+E EEE E E E+ EE K+ +
Sbjct: 102 SGATRNYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQ 161
Query: 209 RRK 211
R+
Sbjct: 162 SRR 164
Score = 29.7 bits (67), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++ +EE+EE E+E EEE + +K + R +
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADS 144
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E ++ +EE+EE E+E EEE + ++ E + K ++
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREM 148
Score = 28.9 bits (65), Expect = 1.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
LE E++EEEEEEEE+E + E EE+ +
Sbjct: 171 SMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRR 209
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 30.8 bits (70), Expect = 0.32
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E+E EEE EE EE++EEEE + EE E +++E +KK+++
Sbjct: 137 EDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 29.2 bits (66), Expect = 1.1
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E EEE EE EE++EEEE + EE E K++E +KKK+ K
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 30.4 bits (69), Expect = 0.32
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ + EEE ++EE+ E E+ E+ E++E E E
Sbjct: 74 EALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTD 112
Score = 28.4 bits (64), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LEEE ++EE+ E E+ E+ E++E E E + E
Sbjct: 77 KLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYE 114
Score = 28.4 bits (64), Expect = 1.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E+ E E+ E+ E++E E E + EEE +E+K K
Sbjct: 86 EEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYK 124
Score = 28.1 bits (63), Expect = 2.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++EE+ E E+ E+ E++E E E + EEE
Sbjct: 83 NDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEY 117
Score = 27.3 bits (61), Expect = 3.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE+ E E+ E+ E++E E E + EE+ +E K K
Sbjct: 86 EEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYK 124
Score = 27.3 bits (61), Expect = 3.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
L+E +E + EEE ++EE+ E E+ E+ E+ E E
Sbjct: 69 LKERKEALKLLEEENDDEEDAETEDTEDVEDDEWE 103
Score = 26.9 bits (60), Expect = 5.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E + EEE ++EE+ E E+ E+ E++E + E
Sbjct: 73 KEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPE 107
Score = 26.9 bits (60), Expect = 5.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+EE+ E E+ E+ E++E E E + E+E ++ K +
Sbjct: 85 DEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYK 124
Score = 26.5 bits (59), Expect = 7.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K +E +E + EEE ++EE+ E E+ E+ E +E E
Sbjct: 67 KQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEG 104
Score = 26.5 bits (59), Expect = 7.2
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+LE++ +E +E + EEE ++EE+ E E+ E E+++
Sbjct: 64 ELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDE 101
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 31.2 bits (70), Expect = 0.32
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
G +EEEE+E+ EE EE EE E EEE +++E+ E++++K
Sbjct: 104 GTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEK 143
Score = 30.8 bits (69), Expect = 0.45
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
G K EEE+E+ EE EE EE E EEE +++E+ EK++E++
Sbjct: 104 GTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDE 151
Score = 29.6 bits (66), Expect = 1.2
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EE+E+ EE EE EE E EEE +++E+ E+ +E+E + +N++
Sbjct: 108 EEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENEL 154
Score = 28.9 bits (64), Expect = 2.2
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE ++EEEE+E+ EE EE EE E EEE +++E +K
Sbjct: 101 EERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEK 139
Score = 28.1 bits (62), Expect = 3.7
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E ++EEEE+E+ EE EE EE E EEE ++E+ +K K
Sbjct: 102 ERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEK 143
Score = 27.3 bits (60), Expect = 6.0
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
G + + EEE ++EEEE+E+ EE EE EE E EEE
Sbjct: 92 GLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEE 130
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 30.9 bits (70), Expect = 0.35
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E E EE+ + E E E + +EK + EKK K+ K K
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKP 101
Score = 29.8 bits (67), Expect = 1.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E EE+ + E E E + +E+ K E++ KK + K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Score = 29.4 bits (66), Expect = 1.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + E E EE+ + E E E + KE+ + +KK +K K
Sbjct: 55 EPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Score = 27.8 bits (62), Expect = 4.3
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EE+ + E E E + +E+ + E++ KK K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98
Score = 27.1 bits (60), Expect = 7.9
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E EE+ + E E E + +E+ + +++ +K K + K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 30.4 bits (69), Expect = 0.35
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 157 HLSRSLCHGWGKLEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L + GK+E+ E E+ E E + E E + EE +++EEK+ ++
Sbjct: 8 SLFIKIIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKDAVN 65
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 31.3 bits (71), Expect = 0.36
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
E EE E E EE+EE+++E+++
Sbjct: 576 ANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 0.99
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.8 bits (67), Expect = 1.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEE 194
+ EE E E EE+EE+++E+++
Sbjct: 579 NEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.4 bits (66), Expect = 1.6
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
E EE E E EE+EE+++E++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 2.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE E E EE+EE++ E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 2.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E EE E E EE+EE+ +E++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 2.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E EE E E EE+EE+++++++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 2.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E EE E E EE+EE+++E ++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 3.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
E EE E E EE+EE+++E+ +
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 31.4 bits (72), Expect = 0.37
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G L E ++ +++ + E++ E+EE E+ +K+ E KK +
Sbjct: 404 GNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 30.7 bits (70), Expect = 0.54
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
K + E++ E+EE E+ +++ E ++ + + E KK
Sbjct: 417 KQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 29.9 bits (68), Expect = 1.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E++ E+EE E+ +++ E ++ + + E KK
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 29.9 bits (68), Expect = 1.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 169 LEEEEEEEEEEEEEEEEEEE---------EEEEEEEEEEEKEEEEKKKKRRKNK 213
L E EEEE E E E++ E+EE EK +KK + K
Sbjct: 392 LLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKK 445
Score = 28.4 bits (64), Expect = 3.1
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
KL +++ + E++ E+EE E+ +++ E +K + + ++ +
Sbjct: 413 KLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVD 457
Score = 28.4 bits (64), Expect = 3.3
Identities = 9/47 (19%), Positives = 25/47 (53%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G+ E ++ +++ + E++ E+EE E+ +++ + +K K
Sbjct: 401 GENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAK 447
Score = 26.8 bits (60), Expect = 9.8
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K E+EE E+ +++ E ++ + + E +K + +
Sbjct: 423 KKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 29.9 bits (68), Expect = 0.37
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 14/59 (23%)
Query: 168 KLEEEEEEEEEEEEEEEEEE--------------EEEEEEEEEEEEKEEEEKKKKRRKN 212
K EEEE+EE +E E +E+ EE E + +EKE+++KKKK ++
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELED 90
Score = 29.9 bits (68), Expect = 0.42
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 15/59 (25%)
Query: 170 EEEEEEEEEEEEEEEEEEEEE---------------EEEEEEEEEKEEEEKKKKRRKNK 213
++ EEEE+EE +E E +E+ EE E + KE+E+KKKK+++ +
Sbjct: 31 DKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELE 89
Score = 29.1 bits (66), Expect = 0.63
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 15/59 (25%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEE---------------EEEEEEKEEEEKKKKRRKNK 213
EE ++ EEEE+EE +E E +E+ EE E + +EK+KK++K K
Sbjct: 28 EEFDKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKK 86
>gnl|CDD|236012 PRK07406, PRK07406, RNA polymerase sigma factor RpoD; Validated.
Length = 373
Score = 31.3 bits (71), Expect = 0.38
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LEE+ + ++ + +E+EE E +E EKE + K R K
Sbjct: 10 LLEEDRQPAATDDLDSDEDEESSSENADELSEKEAKAKALARIK 53
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 30.1 bits (68), Expect = 0.39
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
W K E ++ + EE ++EE E EE EE + EE +K+
Sbjct: 86 WEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 27.8 bits (62), Expect = 2.2
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E++ E ++ + EE ++EE E EE EE + + + +
Sbjct: 87 EKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 27.0 bits (60), Expect = 4.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G +E E++ E ++ + EE ++EE E +E EE + + + +
Sbjct: 80 GPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMR 126
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 30.6 bits (69), Expect = 0.39
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+EE E E+ +E E+ + EEE E+EK EK K
Sbjct: 41 LVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLK 80
Score = 28.7 bits (64), Expect = 1.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
K ++E EE E E+ +E E+ + EEE E+EK
Sbjct: 35 KKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKV 74
Score = 28.7 bits (64), Expect = 2.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K ++E EE E E+ +E E+ + EE+ E++K K K
Sbjct: 35 KKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKE 81
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 29.6 bits (67), Expect = 0.40
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEE 190
GK+E +E + EE EEE E E E E
Sbjct: 76 GKIEIKERKNEETEEENEIEGESE 99
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 31.0 bits (69), Expect = 0.40
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E E E EE E +++ + EEEEEEKEEE+++ R K K
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPK 237
Score = 27.9 bits (61), Expect = 3.7
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E EE E +++ + EEEEEE+EEEK++ + K ++
Sbjct: 201 EGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKK 238
Score = 27.5 bits (60), Expect = 4.8
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE E +++ + EEEEEE+EEE+++ + KK RR++
Sbjct: 203 EEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARRRDP 245
Score = 26.8 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE E +++ + EEEEEE+EEE+++ + + +K +RR
Sbjct: 203 EEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCKPKKPARRR 243
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 30.7 bits (69), Expect = 0.41
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 170 EEEEEEEEEEEEEEEEEEEE-------EEEEEEEEEEKEEEEK 205
EEEE EE + EEEE+EE E E EEE+EE E
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEG 218
Score = 30.3 bits (68), Expect = 0.56
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EE + EEEE+EE + E E +EEEE+ +
Sbjct: 180 ERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEG 218
Score = 30.3 bits (68), Expect = 0.59
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+ EE + EEEE+EE + E E E+EEEE +
Sbjct: 178 EEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEG 218
Score = 30.3 bits (68), Expect = 0.65
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 161 SLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
W E+ +E + + + EEEE EE + EEE++EE
Sbjct: 153 RFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEE 195
Score = 26.9 bits (59), Expect = 8.5
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ EEEE EEE E E EEE EE +E KK+K
Sbjct: 236 KQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQK 277
Score = 26.9 bits (59), Expect = 8.9
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEEE EEE E E EEE EE + EE K++K
Sbjct: 239 EEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQK 277
Score = 26.9 bits (59), Expect = 9.0
Identities = 18/39 (46%), Positives = 20/39 (51%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EEEE EEE E E EEE EE EE KK++
Sbjct: 239 EEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQK 277
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 30.3 bits (69), Expect = 0.44
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE+EEEEE E+EEE EEE EE EEE EE + + R
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLR 36
Score = 29.1 bits (66), Expect = 1.3
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE+EEEEE E+EEE EEE EE EE+ EE K + R
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLL 38
Score = 28.7 bits (65), Expect = 1.6
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE+EEEEE E+EEE EEE EE EEE EE K+ + +N
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFEN 43
Score = 27.6 bits (62), Expect = 3.8
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+EEEEE E+EEE EEE EE E++ + K++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 31.0 bits (70), Expect = 0.46
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++++EEE E E+E + EE E++ ++EEEE + E
Sbjct: 166 SSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 30.2 bits (68), Expect = 0.69
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K +E ++++EEE E E+E + EE E++ + EEEE
Sbjct: 161 KEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
Score = 29.0 bits (65), Expect = 2.2
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++++EEE E E+E + EE E++ ++EEE++ + + + +
Sbjct: 167 SDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGML 211
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 30.8 bits (70), Expect = 0.48
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L++ +E ++++ E EE+ E E E++ + +EE KKKK +++K
Sbjct: 222 PLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESK 267
Score = 26.9 bits (60), Expect = 8.3
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E ++++ E EE+ E E E++ + +EE K+++ K+ K K
Sbjct: 227 LKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALK 273
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 30.6 bits (69), Expect = 0.48
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
LE E E EEE EE E+E E E E+EE+ +E+ + ++
Sbjct: 210 LESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALA 255
Score = 28.7 bits (64), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EEE EE E+E E E E+EE+ +E+ E+ +++
Sbjct: 214 VEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGD 257
Score = 28.3 bits (63), Expect = 3.2
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + E E E EEE EE E+E E E E EE+
Sbjct: 206 EPFQLESEVEASPEEENYEEYEDETELEVEDEEKA 240
Score = 27.5 bits (61), Expect = 5.1
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E + E E E EEE EE E+E E E E+EEK
Sbjct: 206 EPFQLESEVEASPEEENYEEYEDETELEVEDEEK 239
Score = 27.2 bits (60), Expect = 7.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E + E E E EEE EE E+E E + E+E+K
Sbjct: 206 EPFQLESEVEASPEEENYEEYEDETELEVEDEEK 239
Score = 27.2 bits (60), Expect = 8.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E + E E E EEE EE E+E E E E+++K
Sbjct: 206 EPFQLESEVEASPEEENYEEYEDETELEVEDEEK 239
Score = 26.8 bits (59), Expect = 9.1
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEE EE E+E E E E+EE+ +E+ E+ ++E+ +K
Sbjct: 218 PEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKK 260
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 30.5 bits (69), Expect = 0.49
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K +++++E+EE E EE + EE EE ++K + E K
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKV 105
Score = 30.2 bits (68), Expect = 0.54
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K ++E+EE E EE + EE EE +++ + + + + N
Sbjct: 69 KKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNH 114
Score = 28.6 bits (64), Expect = 1.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
K +EE E EE + EE EE +++ + E K + +
Sbjct: 71 KKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAE 111
Score = 27.9 bits (62), Expect = 3.0
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +++++E+EE E EE + EE EE +++ + E K + +
Sbjct: 66 KTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAE 111
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 29.9 bits (67), Expect = 0.50
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E +EEEE +E +E +E + E EE +EEE EE E
Sbjct: 96 EADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 29.5 bits (66), Expect = 0.55
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE E + +E+ +E E + +E +EE+E +E
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEADEEEETDE 105
Score = 28.8 bits (64), Expect = 1.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE E + +E+ +E E + +E EEEE
Sbjct: 68 AAAEAAEEAEAADADEDADEAAEADAADEADEEEE 102
Score = 28.8 bits (64), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E + +E+ +E E + +E +EEEE +E
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEETDEAV 107
Score = 28.8 bits (64), Expect = 1.3
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E +EEEE +E +E +E + E EE +E+E+EE
Sbjct: 94 ADEADEEEETDEAVDETADEADAEAEEADEEEDEE 128
Score = 28.8 bits (64), Expect = 1.3
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE E + +E+ +E E + E +E
Sbjct: 65 AATAAAEAAEEAEAADADEDADEAAEADAADEADE 99
Score = 28.8 bits (64), Expect = 1.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +E +EEEE +E +E +E + E EE +EEE
Sbjct: 91 ADAADEADEEEETDEAVDETADEADAEAEEADEEE 125
Score = 28.4 bits (63), Expect = 1.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E + +E+ +E E + +E +EEEE E +
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEETDEAVD 108
Score = 28.4 bits (63), Expect = 1.5
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EEEE +E +E +E + E EE +EEE++E E
Sbjct: 97 ADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 28.4 bits (63), Expect = 1.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE E + +E+ +E E + +E +EEE
Sbjct: 67 TAAAEAAEEAEAADADEDADEAAEADAADEADEEE 101
Score = 28.4 bits (63), Expect = 1.8
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +E +EEEE +E +E +E + E EE EEE+
Sbjct: 92 DAADEADEEEETDEAVDETADEADAEAEEADEEED 126
Score = 28.0 bits (62), Expect = 1.9
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E +EEEE +E +E +E + E EE ++EE+E
Sbjct: 93 AADEADEEEETDEAVDETADEADAEAEEADEEEDE 127
Score = 28.0 bits (62), Expect = 2.1
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G E EE E + +E+ +E E + +E +
Sbjct: 59 EKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEAD 98
Score = 28.0 bits (62), Expect = 2.1
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E EE E + +E+ +E E + ++ +EE
Sbjct: 66 ATAAAEAAEEAEAADADEDADEAAEADAADEADEE 100
Score = 28.0 bits (62), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + +E+ +E E + +E +EEEE +E +E
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDET 110
Score = 28.0 bits (62), Expect = 2.2
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G+ E+ E EE E + +E+ +E E +
Sbjct: 56 GRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADA 93
Score = 27.6 bits (61), Expect = 2.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + +E+ +E E + +E +EEEE +E +E
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETA 111
Score = 27.6 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E + +E+ +E E + +E +EEEE ++ +E
Sbjct: 75 EAEAADADEDADEAAEADAADEADEEEETDEAVDE 109
Score = 27.2 bits (60), Expect = 4.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E+ +E E + +E +EEEE +E +E E +
Sbjct: 82 DEDADEAAEADAADEADEEEETDEAVDETADEADA 116
Score = 26.8 bits (59), Expect = 5.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +E+ +E E + +E +EEEE +E +E +E
Sbjct: 80 DADEDADEAAEADAADEADEEEETDEAVDETADEA 114
Score = 26.8 bits (59), Expect = 5.7
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +E+ +E E + +E +EEEE +E E +
Sbjct: 78 AADADEDADEAAEADAADEADEEEETDEAVDETAD 112
Score = 26.5 bits (58), Expect = 6.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ +E+ +E E + +E +EEEE +E ++ +E
Sbjct: 79 ADADEDADEAAEADAADEADEEEETDEAVDETADE 113
Score = 26.5 bits (58), Expect = 7.3
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
G + E EE E + +E+ +E E +
Sbjct: 56 GRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAA 94
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 30.0 bits (68), Expect = 0.50
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E +EEEEEE EEEE E E K + R
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 29.3 bits (66), Expect = 0.72
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E +EEEEEE EEEE E + E + + +
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSRPL 84
Score = 28.1 bits (63), Expect = 2.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E +EEEEEE EEEE + + + + +++
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSRP 83
Score = 28.1 bits (63), Expect = 2.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E +EEEEEE EEEE E + E + + +
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 27.7 bits (62), Expect = 2.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 183 EEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E +EEEEEE EEEE E + E K +
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 27.7 bits (62), Expect = 2.7
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKE 201
E +EEEEEE EEEE E + E K
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKS 79
Score = 27.3 bits (61), Expect = 4.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E +EEEEEE EEEE E + E K + +
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 26.6 bits (59), Expect = 6.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
E +EEEEEE EEEE E + E + + +
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 26.6 bits (59), Expect = 6.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEE 191
E +EEEEEE EEEE E + E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVE 74
Score = 26.2 bits (58), Expect = 9.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E +EEEEEE EEEE E + + + + + ++I
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSRPLVDEI 88
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 29.8 bits (67), Expect = 0.51
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
G G +EEEEEEEE E++++ +E + ++ ++ E E
Sbjct: 90 GTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAE 127
Score = 29.4 bits (66), Expect = 0.76
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EEEEEEEE E++++ +E + ++ ++ E E E
Sbjct: 93 HTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGE 130
Score = 29.0 bits (65), Expect = 0.83
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EEEEEEEE E++++ +E + ++ ++ E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
Score = 29.0 bits (65), Expect = 0.84
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+EEEEEEEE E++++ +E + ++ ++ E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
Score = 28.6 bits (64), Expect = 1.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+EEEEEEEE E++++ +E + ++
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQ 118
Score = 28.2 bits (63), Expect = 1.8
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+EEEEEEEE E++++ E + ++ ++ ++
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEH 124
Score = 28.2 bits (63), Expect = 1.9
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
EEEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 98 EEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 28.2 bits (63), Expect = 2.0
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EEEEEEEE E++++ +E + ++ ++++
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
Score = 27.9 bits (62), Expect = 2.2
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EEEEEEEE E++++ +E + ++ ++ E + EE
Sbjct: 97 EEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 31.1 bits (71), Expect = 0.51
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
+ L + +E++ EE+E+ EE ++EEEEEEEE +
Sbjct: 320 AY-LLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDD 355
Score = 30.7 bits (70), Expect = 0.58
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E++ EE+E+ EE ++EEEEEEEE ++ +
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
Score = 30.7 bits (70), Expect = 0.59
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
K +E++ EE+E+ EE ++EEEEEEEE ++ +
Sbjct: 325 KRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDP 361
Score = 29.9 bits (68), Expect = 1.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ E++ EE+E+ EE ++EEEEEEEE ++ +
Sbjct: 324 SKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDP 361
Score = 27.2 bits (61), Expect = 6.9
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE+E+ EE ++EEEEEEEE ++ + E E
Sbjct: 331 AEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 30.9 bits (70), Expect = 0.55
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L+ + E + + EE+ +E + EE K+ K ++K
Sbjct: 895 LQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDK 939
Score = 28.6 bits (64), Expect = 2.9
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E + + EE+ +E + EE K +E + K +
Sbjct: 901 TEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 28.2 bits (63), Expect = 4.0
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
K E + + EE+ +E + EE ++ +E + K +
Sbjct: 900 KTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHK 941
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 30.1 bits (68), Expect = 0.56
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+L E+EE E+ EEE+E +EE+ ++EE++++ K+K +++
Sbjct: 87 RLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 29.7 bits (67), Expect = 0.83
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+EE E+ EEE+E +EE+ +KEE+E+K + K+K
Sbjct: 91 EQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDK 128
Score = 28.2 bits (63), Expect = 2.9
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K E+EE E+ EEE+E +EE+ ++E++E++ K++ K +I
Sbjct: 85 KRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEI 131
>gnl|CDD|236876 PRK11191, PRK11191, RNase E inhibitor protein; Provisional.
Length = 138
Score = 29.5 bits (67), Expect = 0.57
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEE 192
GWG E+ E+ ++E+ +E+++
Sbjct: 110 GWGTYFEDPNAEDGDDEDFVDEDDDGVR 137
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 30.5 bits (70), Expect = 0.58
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEE-EEEKEEEE 204
LEE E EEEE EEE + EEEE++ ++E+
Sbjct: 323 AELLEETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 30.6 bits (69), Expect = 0.59
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 134 LNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEE 193
R + AK G + KL E+E E++ E E+ +E+E+
Sbjct: 486 FEIAQRYGIPHFIIEQAKT-FYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKL 544
Query: 194 EEEEEEKEEEEKKKKRRKNK 213
++E E++ EE K+++R K
Sbjct: 545 KKELEQEMEELKERERNKKL 564
Score = 28.6 bits (64), Expect = 2.9
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
KL +E+E+ ++E E+E EE +E E ++ E EKE +E K +K
Sbjct: 536 KLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKK 579
Score = 28.2 bits (63), Expect = 3.8
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+ E+E E++ E E+ +E+E+ ++E E+E ++ K R+
Sbjct: 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562
Score = 27.9 bits (62), Expect = 5.5
Identities = 14/40 (35%), Positives = 28/40 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+LE++ E E+ +E+E+ ++E E+E EE +E+E +K +
Sbjct: 526 ELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLE 565
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 28.5 bits (64), Expect = 0.59
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
KL+ +++E + EEE+ EEEEE + EE +E EK
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEARKREERKEREKN 54
Score = 27.7 bits (62), Expect = 0.95
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E + EEE+ EEEEE + EE +E E+ K EE
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEE 59
Score = 27.3 bits (61), Expect = 1.4
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
L+ EEE+ EEEEE + EE +E E+ + EE E +
Sbjct: 29 LKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 27.3 bits (61), Expect = 1.4
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E + EEE+ EEEEE + E++K+R KNK
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 27.3 bits (61), Expect = 1.7
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++E + EEE+ EEEEE + EE++E EK K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.5 bits (59), Expect = 2.7
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++E + EEE+ EEEEE + EE KE E+ K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 26.1 bits (58), Expect = 3.5
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E + EEE+ EEEEE + EE +E E+ + EE
Sbjct: 25 KKKELKAEEEKREEEEEARKREERKEREKNKSFEEL 60
Score = 26.1 bits (58), Expect = 4.4
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++E + EEE+ EEEEE + EE ++ E+ K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 25.4 bits (56), Expect = 8.3
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
K EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 30.5 bits (69), Expect = 0.60
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
K+ EEE +EE EE + + + ++ E K RR
Sbjct: 181 KISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARR 223
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K EEE +EE EE + + + +K E K R+
Sbjct: 180 KKISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARR 223
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.5 bits (69), Expect = 0.62
Identities = 11/44 (25%), Positives = 29/44 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K E +++ E+++++++E++E + E E + K ++ KK ++K
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 30.5 bits (69), Expect = 0.70
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +++ E+++++++E++E + E E + + ++ KK K++ K
Sbjct: 65 ESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPK 108
Score = 30.1 bits (68), Expect = 0.79
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E +++ E+++++++E++E + E E + + KK K+ K K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
Score = 30.1 bits (68), Expect = 0.99
Identities = 11/46 (23%), Positives = 32/46 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +++E++ E +++ E+++++++E++E + E E + K +K+K
Sbjct: 55 KKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSK 100
Score = 28.5 bits (64), Expect = 2.6
Identities = 10/47 (21%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K ++ E +++ E+++++++E++E + E E + + KK ++ K
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKK 105
Score = 28.1 bits (63), Expect = 3.8
Identities = 11/44 (25%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++ E+++++++E++E + E E + + K+ ++ KKK K K
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPK 110
Score = 27.4 bits (61), Expect = 6.1
Identities = 10/43 (23%), Positives = 27/43 (62%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +++ E+++++++E++E + E E + + +K KK +K
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKP 106
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 30.5 bits (69), Expect = 0.69
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEE--------EEEEEEKEEEEKKKKRRKNK 213
++E +EE+E + E E ++E++ +E+ E++ E K+RKNK
Sbjct: 1519 EIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNK 1572
Score = 30.5 bits (69), Expect = 0.83
Identities = 8/37 (21%), Positives = 27/37 (72%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
++ E + + EE+ ++++++E++++EE ++++K R
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.1 bits (68), Expect = 1.0
Identities = 10/40 (25%), Positives = 29/40 (72%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ E + + EE+ ++++++E++KEEE K++++ + +I
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 29.7 bits (67), Expect = 1.5
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEE------EEEEEEEEEKEEEEKKKKRRKNK 213
+EE+E + E E ++E++ +E+ EE E KKR+ K
Sbjct: 1522 NRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKK 1573
Score = 29.3 bits (66), Expect = 2.1
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++ E + + EE+ ++++++E+++EEE K EE+ +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 28.5 bits (64), Expect = 2.8
Identities = 9/38 (23%), Positives = 25/38 (65%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
W + E + + EE+ ++++++E+++EEE + +E+
Sbjct: 728 WNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 27.8 bits (62), Expect = 5.3
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++ E + + EE+ ++++++E+++EEE + EEK +
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 29.5 bits (66), Expect = 0.70
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 149 IAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
I K+M L GK +E +E + EEE+EE +E E EEE + + ++ EE+++
Sbjct: 4 IMKQMVGNQLKDVKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREV 63
Query: 209 RRK 211
R+
Sbjct: 64 MRQ 66
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 28.6 bits (64), Expect = 0.70
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+++EE+ E E +E+ E+ K KKK+
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQ 61
Score = 27.1 bits (60), Expect = 2.3
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+++EE+ E E +E+ EK + KK++
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQA 62
Score = 27.1 bits (60), Expect = 2.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++EE+ E E +E+ E+ + KKK+ K +
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 26.7 bits (59), Expect = 3.0
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
L+++EE+ E E +E+ E+ + ++++ K+E
Sbjct: 32 LKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 26.7 bits (59), Expect = 3.7
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+G + +++EE+ E E +E+ E+ + K+++ K++ +
Sbjct: 23 VYGAKHQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKS 68
Score = 25.5 bits (56), Expect = 8.0
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++EE+ E E +E+ E+ + +KK+ +++ K
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 30.5 bits (69), Expect = 0.71
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E++ E+ ++++++ + EEEE RR+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMRRR 68
Score = 30.5 bits (69), Expect = 0.79
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E++ E+ ++++++ + +EEE+ +RR
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMRRR 68
Score = 30.1 bits (68), Expect = 1.0
Identities = 6/36 (16%), Positives = 20/36 (55%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E++ E+ ++++++ + E+EE+ ++R
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMRRR 68
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 30.3 bits (69), Expect = 0.71
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E++ ++E E ++ EE E++K+K+R + K
Sbjct: 490 EQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAK 530
Score = 30.3 bits (69), Expect = 0.74
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
L+EE ++ E ++++ EE E +EE E E+KEE E K +
Sbjct: 542 KSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEE 584
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.5 bits (69), Expect = 0.73
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 131 PPTLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEE----EEEEEEEEEEEEEE 186
P K+L L + + +E+ L +LE+E EEE E E EE
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527
Query: 187 EEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE EE+ E+ E EE ++ K +
Sbjct: 528 KEELEEKLEKLENLLEELEELKEKLQL 554
Score = 29.3 bits (66), Expect = 1.5
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE+ E EE E E EE EEE E EE EE +K K + ++
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERL 331
Score = 29.0 bits (65), Expect = 2.1
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEEE E+EE E EE EE E+E E EEE E + ++ K ++
Sbjct: 485 ELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEEL 531
Score = 29.0 bits (65), Expect = 2.2
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L+E ++ EE +EE+EEEE E+E E EE + EEEK++
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKA 256
Score = 28.6 bits (64), Expect = 3.2
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE+ EE E E E + E EE+ EE+ EE E+ E++ ++ + ++
Sbjct: 658 ELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREEL 704
Score = 28.2 bits (63), Expect = 4.0
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KL+ ++ +EE + E+ +E +E EE +EE ++ R + K
Sbjct: 550 EKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLK 596
Score = 27.8 bits (62), Expect = 5.5
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
KLE EE EE +E+ + ++ +EE + E+ +E +E ++ R
Sbjct: 537 KLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLL 581
Score = 27.4 bits (61), Expect = 6.5
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++EE EEE E EE EE E+ + EE E+ E+K ++ ++++
Sbjct: 298 REIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESEL 345
Score = 27.4 bits (61), Expect = 7.1
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
KLE+ E E EE EE+ E + EE +E EE+ EE +K+ +
Sbjct: 337 KLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKA 380
Score = 27.4 bits (61), Expect = 7.6
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
KLEE +EE+EEEE E+E E EE E EEE++ EE K +
Sbjct: 217 KLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKAR 257
Score = 27.4 bits (61), Expect = 7.9
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE E E EE EEE E EE EE E+ + E++ ++ + K+
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKL 338
Score = 27.0 bits (60), Expect = 8.7
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ +EE EE+ E+ E EE EE +E+ + ++ +EE ++ + R ++
Sbjct: 525 EALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQEL 571
>gnl|CDD|238110 cd00186, TOP1Ac, DNA Topoisomerase, subtype IA; DNA-binding,
ATP-binding and catalytic domain of bacterial DNA
topoisomerases I and III, and eukaryotic DNA
topoisomerase III and eubacterial and archael reverse
gyrases. Topoisomerases clevage single or double
stranded DNA and then rejoin the broken phosphodiester
backbone. Proposed catalytic mechanism of single
stranded DNA cleavage is by phosphoryl transfer through
a tyrosine nucleophile using acid/base catalysis. Tyr is
activated by a nearby group (not yet identified) acting
as a general base for nucleophilic attack on the 5'
phosphate of the scissile bond. Arg and Lys stabilize
the pentavalent transition state. Glu then acts as a
proton donor for the leaving 3'-oxygen, upon cleavage of
the scissile strand.
Length = 381
Score = 30.3 bits (69), Expect = 0.73
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 136 KKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
++ V ++ I E L GW ++ EE+++EEEE +E +E + EE
Sbjct: 216 EETTVTLE-----IGGEKFKASGKVLLEDGWLEVYPEEKDDEEEEPPPLKEGDELKLEEV 270
Query: 196 EEEEKE 201
E EEKE
Sbjct: 271 ELEEKE 276
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or 'arrest'
during elongation process. It is thus possible that BEX
is also acting in this way.
Length = 97
Score = 28.9 bits (65), Expect = 0.73
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+ +E E + E E +EEEE+ EE E K+ E ++R
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRL 41
Score = 28.1 bits (63), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+E+ +E E + E E +EEEE+ EE E +K E +++ R
Sbjct: 1 MEKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRLR 42
Score = 27.3 bits (61), Expect = 2.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E+ +E E + E E +EEEE+ EE + ++ + RR+
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRR 40
Score = 26.5 bits (59), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
K +E E + E E +EEEE+ EE E ++ E
Sbjct: 3 KPCKENEGKPESEPKEEEEKRPLEEGEGKKPE 34
Score = 25.8 bits (57), Expect = 8.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E E + E E +EEEE+ EE E ++ E +++ RR
Sbjct: 7 ENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRLRR 43
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 30.1 bits (68), Expect = 0.76
Identities = 5/35 (14%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E + +++++E+ E + ++ +++ +E E+
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDL 284
Score = 26.6 bits (59), Expect = 9.4
Identities = 5/33 (15%), Positives = 20/33 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
G ++++E+ E + ++ +++ +E+ E+ +
Sbjct: 255 GSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDT 287
>gnl|CDD|215252 PLN02458, PLN02458, transferase, transferring glycosyl groups.
Length = 346
Score = 30.3 bits (68), Expect = 0.76
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 133 TLNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEE 190
NK ++A H +L+R+L + + E E E+EEEE
Sbjct: 48 ASNKSQFSPQPVEMLHVATTPHHSNLNRTLINAQTPVPAPARSAESETASLLEKEEEE 105
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 29.9 bits (68), Expect = 0.76
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E+ E E + E E E+E E+++EEE+ E +++
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQER 239
Score = 29.2 bits (66), Expect = 1.4
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ E E + E E E+E E+++EEE+ E +++ +++
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHV 245
Score = 28.4 bits (64), Expect = 2.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E + E E E+E E+++EEE+ E +E+ +E K+
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQ 247
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E+ E E + E E E+E E+++EE++ E +++
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240
Score = 28.0 bits (63), Expect = 3.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+E E + E E E+E E+++EEE+ E +E ++ ++
Sbjct: 205 AIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQ 247
Score = 28.0 bits (63), Expect = 3.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+E+ E E + E E E+E E++KEEE+ + + +
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQER 239
Score = 28.0 bits (63), Expect = 4.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E+ E E + E E E+E E+++EEE+ + ++
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQER 239
Score = 27.6 bits (62), Expect = 4.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E + E E E+E E+++EEE+ E ++ ++ K+ K+
Sbjct: 208 AERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKM 252
Score = 27.6 bits (62), Expect = 4.8
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+ E E + E E E+E E++++EE+ + + R +
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
Score = 27.3 bits (61), Expect = 5.8
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ E E+++EEE+ E +E +E ++ EK E E++K +
Sbjct: 219 EQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQ 263
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 30.3 bits (68), Expect = 0.79
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EEE + +E +EEE+E++ +EEE + KEEEE K + K +
Sbjct: 262 EKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 307
Score = 29.9 bits (67), Expect = 1.2
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE E E + EE + +E + +E+ ++ E + K+K +
Sbjct: 179 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Score = 29.6 bits (66), Expect = 1.4
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LE+EEE + +E +EEE+E++ +EEE + +EE++ K K
Sbjct: 259 QELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 305
Score = 29.2 bits (65), Expect = 1.8
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K +E ++ EE E E + EE + +E + +E+ KK
Sbjct: 171 KKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL 216
Score = 29.2 bits (65), Expect = 1.9
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K +EEE EEE +EE E EEE+ E+EEK +EE+ ++
Sbjct: 798 KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 844
Score = 29.2 bits (65), Expect = 1.9
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K E ++ EE E E + EE + +E + KE+ +K + + K
Sbjct: 172 KKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLK 217
Score = 29.2 bits (65), Expect = 2.0
Identities = 19/47 (40%), Positives = 35/47 (74%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+L++E+EE EE E+E +E E + E EEEEEE+ E+ ++K ++ + ++
Sbjct: 330 ELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEEL 376
Score = 29.2 bits (65), Expect = 2.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE E EE+EE ++E ++E EEE+K+ R +
Sbjct: 969 AKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEE 1015
Score = 29.2 bits (65), Expect = 2.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
KL EE E E + EE + +E + +E+ ++ E + K++ + +
Sbjct: 178 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE 223
Score = 29.2 bits (65), Expect = 2.2
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ + +++E ++ EE E E + EE + +E + K++ ++ +
Sbjct: 164 AGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALE 212
Score = 28.8 bits (64), Expect = 2.5
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L + +E +EEE+E++ +EEE + +EEEE + E K +RRK
Sbjct: 267 ILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 313
Score = 28.8 bits (64), Expect = 2.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L E EE+EE ++E ++E EEE++E E ++ +R +
Sbjct: 977 NLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKE 1022
Score = 28.8 bits (64), Expect = 2.9
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 134 LNKKLRVLVDFSSPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEE 193
L K + + +L++EEEEEE+ E +E+E EEEE
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEE 782
Query: 194 EEEEEEKEEEEKKKKRRKNK 213
+ E+ + EEE+++K + + +
Sbjct: 783 KTEKLKVEEEKEEKLKAQEE 802
Score = 28.8 bits (64), Expect = 3.0
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L +E+EE E ++E E+EEE + +E +E+E+E+K ++ +
Sbjct: 246 LLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLL 292
Score = 28.8 bits (64), Expect = 3.0
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K +EE E EE+EE ++E ++E ++++++
Sbjct: 964 KRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKE 1007
Score = 28.4 bits (63), Expect = 3.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ ++E ++ EE E E + EE + +E K +E+ KK
Sbjct: 170 RKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEY 213
Score = 28.0 bits (62), Expect = 4.1
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+L +E+EE E ++E E+EEE + +E ++EE+EKK + +
Sbjct: 243 LQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEE 288
Score = 28.0 bits (62), Expect = 4.4
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K E +E+E EEEE+ E+ + EEE+EE+ + +EEE + + K
Sbjct: 767 KSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKE 813
Score = 28.0 bits (62), Expect = 4.5
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
L E + EE + +E + +E+ ++ E + KE+ E +++
Sbjct: 185 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYL 230
Score = 28.0 bits (62), Expect = 5.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+L +EE E EE+EE ++E K+E +++K+ +
Sbjct: 965 RLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLR 1010
Score = 28.0 bits (62), Expect = 5.1
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EE E ++E E+EEE + +E +EEE+EK+ +E++ K +
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEE 296
Score = 28.0 bits (62), Expect = 5.3
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LE+E +E E + E EEEEEE+ E+ +E+ E+ EEE KK+ +
Sbjct: 341 LEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLE 383
Score = 27.6 bits (61), Expect = 5.7
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ + +E+EEEEE+ ++EEEEEE+ E +EKE E+++K K K+
Sbjct: 743 EQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKV 789
Score = 27.6 bits (61), Expect = 5.9
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K E+EE EE E+E +E E + E EEEEEE+ EK +E+ ++ +
Sbjct: 332 KKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLA 378
Score = 27.6 bits (61), Expect = 5.9
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ ++E E+EEE + +E +EEE+E++ +E+E + K+ + K
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELK 300
Score = 27.6 bits (61), Expect = 6.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+EE E EE+EE ++E ++E+ EEEKK+ R+
Sbjct: 968 LAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLRE 1011
Score = 27.6 bits (61), Expect = 6.4
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE + E E EE EE +E+E+EE+ KEEEE++ KR
Sbjct: 926 EEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAK 970
Score = 27.6 bits (61), Expect = 6.4
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ E E + EE + +E + +E+ ++ E + +EK + +N
Sbjct: 182 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 27.2 bits (60), Expect = 7.3
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++E ++E E+EEE + +E +EEE+E++ +EEE K + + +
Sbjct: 253 EIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEE 298
Score = 27.2 bits (60), Expect = 7.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EE EE E ++ + EE+EE E++ + + + E KK + +
Sbjct: 432 IVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKET 478
Score = 27.2 bits (60), Expect = 8.1
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +EEE EE E +EE++ E+ EEE E +EE K++ ++
Sbjct: 829 EKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELL 874
Score = 27.2 bits (60), Expect = 8.6
Identities = 7/47 (14%), Positives = 22/47 (46%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E + EE + +E + +E+ ++ E + +++ E +++
Sbjct: 186 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDY 232
Score = 27.2 bits (60), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L +EE E EE+EE ++E +KE E++KK +I
Sbjct: 967 LLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREI 1012
Score = 27.2 bits (60), Expect = 9.2
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ E EE+EE ++E ++E EEE++E E EE ++ + ++
Sbjct: 981 IAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLEL 1026
Score = 26.9 bits (59), Expect = 9.5
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L+E +E+EE E ++E E+EEE + ++ +EE+K+K+ + +
Sbjct: 243 LQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEE 288
Score = 26.9 bits (59), Expect = 9.9
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L+E +EEE+E++ +EEE + +EEEE + E + E++K + K+
Sbjct: 271 VLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 317
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 30.5 bits (69), Expect = 0.80
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E EE +EE EE +E EE E+ E+ +KK K +
Sbjct: 456 ELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLE 492
Score = 28.9 bits (65), Expect = 2.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EE +EE EE +E EE E+ ++ ++K K +
Sbjct: 456 ELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAM 496
Score = 27.8 bits (62), Expect = 5.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
LE EE +EE EE +E EE E+ E+ +K+ + +
Sbjct: 455 LELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEF 493
Score = 27.4 bits (61), Expect = 6.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EE +EE EE +E EE E+ E+ K++ + +
Sbjct: 456 ELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEF 493
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 30.4 bits (69), Expect = 0.81
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+E+ + ++E + EE+ +E E+EE ++ + ++K+R
Sbjct: 685 DEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
Score = 29.2 bits (66), Expect = 1.8
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 186 EEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE + +E+ + + + E+++ RRK +
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPR 610
Score = 29.2 bits (66), Expect = 1.8
Identities = 7/32 (21%), Positives = 20/32 (62%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE + +E+ + E + + +++++K R+ N+
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQNNR 614
Score = 27.3 bits (61), Expect = 6.7
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E + EE E E E E + E
Sbjct: 954 DETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVA 988
Score = 27.3 bits (61), Expect = 6.7
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E+ + ++E + EE+ +E E+EE ++ + ++K+R
Sbjct: 685 DEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQR 723
Score = 27.3 bits (61), Expect = 7.8
Identities = 8/32 (25%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE + +E+ + E + E++++ ++K R+N
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQD--RRKPRQN 612
Score = 27.3 bits (61), Expect = 8.5
Identities = 8/35 (22%), Positives = 9/35 (25%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E E + E E E E E
Sbjct: 966 AEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPE 1000
Score = 26.9 bits (60), Expect = 9.3
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+E+ + ++E + EE+ +E E++E ++ + RRK
Sbjct: 685 DEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRK 721
Score = 26.9 bits (60), Expect = 9.5
Identities = 8/34 (23%), Positives = 9/34 (26%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E E E E + E E E
Sbjct: 961 EAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 28.1 bits (63), Expect = 0.82
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 0.91
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.1 bits (63), Expect = 0.96
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEE 193
K+E E + +E+E E E E EEE
Sbjct: 27 SKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.9 bits (60), Expect = 2.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
G + E E + +E+E E E E EEE
Sbjct: 23 GHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.9 bits (60), Expect = 2.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E + E E + +E+E E E + EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.2 bits (58), Expect = 3.8
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 158 LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
S S + + E + E E + +E+E E E E EE+ RR
Sbjct: 6 CSSSSLAAAARPLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEEECLMRR 58
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 29.2 bits (66), Expect = 0.82
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+EE E + E+E E+ +KEEE ++ KR++ K
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
Score = 28.8 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E+EE E + E+E E+ ++EE+ E K+++R+ N
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAKRQQRKLN 117
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 30.0 bits (68), Expect = 0.83
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEE 188
GWGK EE E EE++E E +
Sbjct: 220 GWGKAEEIFGEPISEEDKETESTD 243
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 30.2 bits (69), Expect = 0.84
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+EE EE E +E E E +EE+ ++ E + K+
Sbjct: 397 FDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKL 442
Score = 28.7 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LE E +EE EE E +E E E +EEK ++
Sbjct: 392 LEIEGFDEETVEELRERAKEALETEALAQEEKLADD 427
Score = 27.9 bits (63), Expect = 4.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E +EE EE E +E E E +EE+ ++
Sbjct: 395 EGFDEETVEELRERAKEALETEALAQEEKLADDLLS 430
Score = 27.5 bits (62), Expect = 5.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE E E +EE EE E +E E E +EEK
Sbjct: 389 EELLEIEGFDEETVEELRERAKEALETEALAQEEK 423
Score = 27.1 bits (61), Expect = 6.7
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
L E +E E E +EE+ ++ E ++E K ++
Sbjct: 405 LRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEK 445
Score = 27.1 bits (61), Expect = 7.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++E +EE EE E +E E E +EE+ ++
Sbjct: 393 EIEGFDEETVEELRERAKEALETEALAQEEKLADDLLS 430
Score = 27.1 bits (61), Expect = 7.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EE E E +EE EE E +E E E +EE+
Sbjct: 388 VEELLEIEGFDEETVEELRERAKEALETEALAQEEK 423
Score = 26.8 bits (60), Expect = 9.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ +E E E +EE+ ++ E + E + EK
Sbjct: 408 RAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEK 445
Score = 26.8 bits (60), Expect = 9.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE E E +EE EE E +E E E +++K +
Sbjct: 384 AYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADD 427
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 170 EEEEEEEEEEEEEEEEEEEEE 190
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 171 EEEEEEEEEEEEEEEEEEEEE 191
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 172 EEEEEEEEEEEEEEEEEEEEE 192
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 173 EEEEEEEEEEEEEEEEEEEEE 193
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 174 EEEEEEEEEEEEEEEEEEEEE 194
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 175 EEEEEEEEEEEEEEEEEEEEE 195
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 176 EEEEEEEEEEEEEEEEEEEEE 196
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 177 EEEEEEEEEEEEEEEEEEEEE 197
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 178 EEEEEEEEEEEEEEEEEEEEE 198
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.87
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 179 EEEEEEEEEEEEEEEEEEEEE 199
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 5.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 184 EEEEEEEEEEEEEEEEKEEEE 204
EEEE+EE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 5.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 182 EEEEEEEEEEEEEEEEEEKEE 202
EEEEEE+++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 6.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 183 EEEEEEEEEEEEEEEEEKEEE 203
EEEEE+E++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 28.6 bits (64), Expect = 0.88
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
L+EEEE EEEE++EE + E + + + ++ +RRK
Sbjct: 9 DLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRK 52
Score = 28.6 bits (64), Expect = 0.95
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE+ +EEEE EEEE++EE + E + ++ +++ R
Sbjct: 3 VSALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTR 45
Score = 28.6 bits (64), Expect = 1.00
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE+ +EEEE EEEE++EE + E + + +++ RR+
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRR 47
Score = 27.4 bits (61), Expect = 2.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE+ +EEEE EEEE++EE + E + + + +RR
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRT 44
Score = 27.1 bits (60), Expect = 2.8
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LEE+ +EEEE EEEE++EE + E + + + ++ +RR
Sbjct: 6 LEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRS 48
Score = 26.7 bits (59), Expect = 4.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+ +EEEE EEEE++EE + E + ++R + +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRR 47
Score = 26.3 bits (58), Expect = 5.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEE EEEE++EE + E + + + ++++R K
Sbjct: 13 EEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRK 56
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 30.0 bits (68), Expect = 0.88
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEE 192
L E +E E EE E EE +EE E+
Sbjct: 239 LAEADEAEPEEAETEEAQEEAAEK 262
Score = 30.0 bits (68), Expect = 0.97
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEK 200
E +E E EE E EE +EE EK
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 29.6 bits (67), Expect = 1.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEK 200
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 28.8 bits (65), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEE 202
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEE 193
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEE 194
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEE 195
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEE 196
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEE 197
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEE 198
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.4 bits (64), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKK 206
E +E E EE E EE ++E EK
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 28.0 bits (63), Expect = 4.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEE 203
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 27.7 bits (62), Expect = 5.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKKK 207
E +E E EE E EE +EE +K
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 27.3 bits (61), Expect = 6.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 183 EEEEEEEEEEEEEEEEEKEEEEK 205
E +E E EE E EE +E+ E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 26.9 bits (60), Expect = 9.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 186 EEEEEEEEEEEEEEKEEEEKKKK 208
E +E E EE E EE +EE +K
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 29.9 bits (67), Expect = 0.90
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
GK + +E+++ E ++E+E E E E +++ +K+ KK +KN
Sbjct: 186 GKEQNGDEDDDFETDDEDEMEVESPELQQKRSKKQSGSLTKKFKKN 231
Score = 27.2 bits (60), Expect = 5.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ +E+ +E+++ E ++E+E E E E ++KR K
Sbjct: 182 LKNPGKEQNGDEDDDFETDDEDEMEVESPELQQKRSK 218
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 30.1 bits (67), Expect = 0.93
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE E+E +++ + E+ +E E E + +++K
Sbjct: 376 ASLSGEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKAGLAS 421
Score = 29.7 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEEE E+E +++ + E+ +E E E K ++RK +
Sbjct: 380 GEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKAGL 419
Score = 28.9 bits (64), Expect = 2.5
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE E+E +++ + E+ +E E E K ++K +
Sbjct: 380 GEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKAGLASPE 423
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 29.9 bits (67), Expect = 0.94
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Query: 169 LEEEEEEEEEEEEEE------------EEEEEEEEEEEEEEEEKEEEEK 205
L EE+E ++E +E+ EE +E++EEEE EEEE+ + K
Sbjct: 306 LGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVK 354
Score = 29.2 bits (65), Expect = 1.6
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 9/47 (19%)
Query: 170 EEEEEEEEEEEE---------EEEEEEEEEEEEEEEEEEKEEEEKKK 207
EE+E ++E +E EE EE +E++EEEE EE+EE + K
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVK 354
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 28.7 bits (65), Expect = 0.94
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+LE EE E+E+++E+EE+EE
Sbjct: 48 RLEAAIAAEEARRAPPAEDEDDDEDEEDEEPA 79
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 29.8 bits (67), Expect = 0.95
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
LEE + +E+E EE E + ++E+E E+ E+ E K +
Sbjct: 235 LEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 29.5 bits (66), Expect = 1.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ + +E+E EE E + ++E+E E+ E+ + + E
Sbjct: 237 ERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 28.3 bits (63), Expect = 3.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
W E + +E+E EE E + ++E+E E+ ++ E K +
Sbjct: 233 WNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 27.2 bits (60), Expect = 8.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEE E + ++E+E E+ E+ E + E E E+ + RK K
Sbjct: 247 ELEENVERDSDDEDEHGEDSEDGETKPESYITSEYIERISEIRKMK 292
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 29.0 bits (65), Expect = 0.96
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEE 189
KL ++EEE+EEE E +EEE
Sbjct: 91 NKLTSKKEEEKEEEIPEPTKEEE 113
Score = 27.1 bits (60), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++EEE+EEE E +EEE E + K++ +K
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGEIRDLLKQQNSSK 129
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 29.3 bits (66), Expect = 0.98
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
K + E E E EEE
Sbjct: 126 KKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 28.9 bits (65), Expect = 1.4
Identities = 7/31 (22%), Positives = 9/31 (29%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
K ++ E E E EEE
Sbjct: 125 KKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 28.5 bits (64), Expect = 1.8
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++++ E E E EEE
Sbjct: 120 EATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 28.1 bits (63), Expect = 2.0
Identities = 6/27 (22%), Positives = 6/27 (22%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEE 199
E E E EEE
Sbjct: 129 AAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 28.1 bits (63), Expect = 2.3
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
++++ E E E EE+
Sbjct: 124 PKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 28.1 bits (63), Expect = 2.5
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++++ E E E EEE
Sbjct: 122 TTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.7 bits (62), Expect = 3.1
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ ++++ E E E +EE
Sbjct: 120 EATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily;
Phd is a cytosolic regulator of G protein functions. It
specifically binds G protein betagamma (Gbg)-subunits
with high affinity, resulting in the solubilization of
Gbg from the plasma membrane. This impedes the formation
of a functional G protein trimer (G protein
alphabetagamma), thereby inhibiting G protein-mediated
signal transduction. Phd also inhibits the GTPase
activity of G protein alpha. Phd can be phosphorylated
by protein kinase A and G protein-coupled receptor
kinase 2, leading to its inactivation. Phd was
originally isolated from the retina, where it is highly
expressed and has been implicated to play an important
role in light adaptation. It is also found in the pineal
gland, liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 29.2 bits (66), Expect = 0.98
Identities = 12/49 (24%), Positives = 30/49 (61%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
W K ++ +E E+E+++++E++EE ++ E+ ++ + RR K+
Sbjct: 16 WRKFKQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAKLPFGRRFGKV 64
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 29.8 bits (68), Expect = 1.00
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 169 LEEEEEEE--------EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
LEEEEE E E+E +EEEEEE E E E + K+
Sbjct: 16 LEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEAALRPKRSL 65
Score = 27.1 bits (61), Expect = 7.3
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 168 KLEEEEEEEE-------EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ EEEEE E +E+E +EEEEEE E E E + +R
Sbjct: 14 EPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEAALRPKRS 64
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 28.9 bits (65), Expect = 1.1
Identities = 7/29 (24%), Positives = 24/29 (82%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEE 196
+++E+ + ++++E++E++EE + E+++E
Sbjct: 46 RIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 2.3
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEE 197
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 2.3
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEE 198
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 2.3
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+E+ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 27.4 bits (61), Expect = 4.0
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+E+ + ++++E++E++EE + E+ +E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.6 bits (59), Expect = 7.2
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+E+ + ++++E++E++EE + E ++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.2 bits (58), Expect = 8.6
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKE 201
+E+ + ++++E++E++EE + E++ E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.2 bits (58), Expect = 9.5
Identities = 6/26 (23%), Positives = 21/26 (80%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E+ + ++++E++E++EE + E+++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDD 73
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 29.3 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++E EE E E+ E +EE EE + E EK + E +KR K
Sbjct: 71 SEVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEKRTK 115
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 29.3 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 29/38 (76%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E ++E+E+++E E E++E +E+E+++E EE+E+ K
Sbjct: 138 ENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 28.6 bits (64), Expect = 1.8
Identities = 13/38 (34%), Positives = 29/38 (76%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++E+E+++E E E++E +E+E+++E++E+EE K
Sbjct: 138 ENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 27.0 bits (60), Expect = 6.4
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E++EEEE++E + ++E ++E+E+++E E E+
Sbjct: 122 EDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDD 157
Score = 26.6 bits (59), Expect = 6.9
Identities = 12/37 (32%), Positives = 28/37 (75%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+L+ +E++EEEE++E + ++E ++E+E+++E E
Sbjct: 117 ELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEIL 153
Score = 26.6 bits (59), Expect = 7.5
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE++E + ++E ++E+E+++E E E+ E +E
Sbjct: 127 EEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDE 161
>gnl|CDD|236987 PRK11798, PRK11798, ClpXP protease specificity-enhancing factor;
Provisional.
Length = 138
Score = 29.0 bits (66), Expect = 1.1
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E E +E+E +++ ++E R +
Sbjct: 103 EPEAAYDEDEHDDDTDPDDEPPPPPRGGR 131
Score = 27.5 bits (62), Expect = 3.7
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E E +E+E +++ + + E + R +
Sbjct: 103 EPEAAYDEDEHDDDTDPDDEPPPPPRGGRPH 133
Score = 26.3 bits (59), Expect = 7.4
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E E +E+E +++ + +++ + R
Sbjct: 103 EPEAAYDEDEHDDDTDPDDEPPPPPRGGR 131
Score = 25.9 bits (58), Expect = 9.9
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E E +E+E +++ + ++E +
Sbjct: 103 EPEAAYDEDEHDDDTDPDDEPPPPPRGGR 131
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 29.8 bits (67), Expect = 1.1
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 158 LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEE 192
L L + + E+++ +E+E+++E+E+E+E+E+E
Sbjct: 876 LEEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.4 bits (66), Expect = 1.7
Identities = 13/36 (36%), Positives = 27/36 (75%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
LEE + +E E+++ +E+E+++E+E+E+E E+E
Sbjct: 875 DLEEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE E E + + E+ E EE E E+++++++ K+
Sbjct: 231 FSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKL 276
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 29.9 bits (68), Expect = 1.1
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
LEE EE EE+ E EE +E++EE E E EEE
Sbjct: 357 LEELEERLEEQNEVVEEADEQQEENEARAEAAEEE 391
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+ +EE E E E E E ++ E+ + + ++
Sbjct: 557 EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
Score = 28.0 bits (63), Expect = 4.1
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L++E+E E+ +EE E E E E E + ++ ++ + +I
Sbjct: 550 LDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARI 595
Score = 28.0 bits (63), Expect = 4.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+LEE+ E EE +E++EE E E EEE +E
Sbjct: 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Score = 28.0 bits (63), Expect = 5.1
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
LE+ +EE E E E E E ++ E+ + + +R
Sbjct: 556 LEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
Score = 28.0 bits (63), Expect = 5.3
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+LEE EE+ E EE +E++EE E E EE+ +E K
Sbjct: 358 EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKS 397
Score = 27.2 bits (61), Expect = 8.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ EE EE EE+ E EE +E++EE E E E++ K
Sbjct: 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 29.7 bits (66), Expect = 1.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + EE +EE ++ E EE EEEE++ E + ++++
Sbjct: 420 ENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDR 463
Score = 27.4 bits (60), Expect = 7.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE ++ E EE EEEE + E + EKE+ E
Sbjct: 430 EESAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
Score = 27.4 bits (60), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE +EE ++ E EE EEEE + +E + +K+ R+
Sbjct: 423 NEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
Score = 27.0 bits (59), Expect = 9.5
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+++++ +E + EE +EE ++ E EE EEE+++ R
Sbjct: 413 IDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRD 457
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 28.8 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+E ++EEE ++E EE E E E E E +K
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.4 bits (64), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E ++EEE ++E EE E E E E E +K +
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 27.6 bits (62), Expect = 3.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E ++EEE ++E EE E E E E E+++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 26.8 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E ++EEE ++E EE E E + E E++K R
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 29.9 bits (67), Expect = 1.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 183 EEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E +E+E++ +E+E + E+++K+RR
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRR 393
Score = 28.3 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +E+E++ +E+E E+E+K++R ++K
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 28.3 bits (63), Expect = 3.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
L E +E+E++ +E+E + E+E + EE+K
Sbjct: 365 PLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.5 bits (61), Expect = 6.0
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
E +E+E++ +E+E + E+E + + EE+K
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.2 bits (60), Expect = 7.2
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E +E+E++ +E+E + E+E + +EE++
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 26.8 bits (59), Expect = 9.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E +E+E++ +E+E + E+E ++ EE K
Sbjct: 366 LPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.8 bits (67), Expect = 1.2
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 168 KLEEEEEEEEEEE-------EEEEEEEEEEEEEEEEEEEKEEE------EKKKKRRK 211
K+ E+E+E+EE E EEEE EE E ++EEEKEE +++ RR+
Sbjct: 300 KMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRR 356
Score = 27.5 bits (61), Expect = 5.9
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
EEE EE+E+E+ + ++ E+E+E+EE E E
Sbjct: 284 EEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPE 316
Score = 27.1 bits (60), Expect = 7.7
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E+E E +E+E+E+E + E + E+E EEK+K++RK
Sbjct: 253 VILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRK 296
Score = 26.7 bits (59), Expect = 9.9
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
LE+E E +E+E+E+E + E + EE+ EE++K+KR++ K
Sbjct: 255 LEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLK 299
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 29.3 bits (66), Expect = 1.2
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ EE + EEEEE EEEEE+ +EEK+EE KK K
Sbjct: 94 KALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIK 135
Score = 29.3 bits (66), Expect = 1.4
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 159 SRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
RSL LEE + EEEEE EEEEE+ +EE++EE ++ K K
Sbjct: 86 YRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMK 138
Score = 28.2 bits (63), Expect = 3.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E EEEEE+ +EE++EE ++ +E + E + K RK+
Sbjct: 110 EMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRLKIRKD 152
Score = 27.0 bits (60), Expect = 6.3
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EEEEE EEEEE+ +EE++EE ++ K+ K
Sbjct: 106 EEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIP 140
Score = 27.0 bits (60), Expect = 6.3
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
EEEEE EEEEE+ +EE++EE ++ +E K
Sbjct: 106 EEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIP 140
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 29.3 bits (66), Expect = 1.3
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ EE ++ + ++E++ ++ + E+E+EE +E +K
Sbjct: 27 EKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDMGDSDSKT 70
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.1 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+LEE E+E EE E+E++ E+ EE+E+++E +E +E+ ++ +
Sbjct: 158 RLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
Score = 27.9 bits (62), Expect = 3.4
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+LEE E+E++ E+ EE+E+++E EE +EE +E E+ +
Sbjct: 165 ELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 27.9 bits (62), Expect = 3.5
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K EE E+E++ E+ EE+E+++E EE +EE EE ++ +
Sbjct: 164 KELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 27.5 bits (61), Expect = 4.2
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+LE+E EE E+E++ E+ EE+E+++E EE KEE E+ + +
Sbjct: 161 ELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 28.9 bits (65), Expect = 1.4
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LEE + E EE ++ ++ ++E++E +K +E +K++++K
Sbjct: 99 LEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
Score = 26.2 bits (58), Expect = 9.2
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K EE + E EE ++ ++ ++E++E K+ +E +K+ +K
Sbjct: 97 KELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKK 140
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 29.2 bits (66), Expect = 1.4
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
G L E E E E+E E+ EE +E ++E+ + E++E E+
Sbjct: 175 GVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREED 214
Score = 28.1 bits (63), Expect = 3.2
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
G +EE+ E E E E+E E+ EE +E + E+ + ++ R+ I
Sbjct: 168 GYRDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDI 215
Score = 27.3 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ E E E+E E+ EE +E ++E+ + EE+E+EE+
Sbjct: 179 EYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPL 219
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 28.4 bits (64), Expect = 1.4
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
KL E E+E +E+ + +EE ++++E++ + +
Sbjct: 3 KLTEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDS 39
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 29.4 bits (66), Expect = 1.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E E ++E ++E EEE + E E+K +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 28.3 bits (63), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKKKK 208
E E ++E ++E EEE + E + K
Sbjct: 369 EGELKDERSDDESEEESDLESSEDK 393
Score = 28.3 bits (63), Expect = 3.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEK 205
E E ++E ++E EEE + + E+K
Sbjct: 369 EGELKDERSDDESEEESDLESSEDK 393
Score = 27.1 bits (60), Expect = 6.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 182 EEEEEEEEEEEEEEEEEEKEEEEKK 206
E E ++E ++E EEE + E E K
Sbjct: 369 EGELKDERSDDESEEESDLESSEDK 393
Score = 27.1 bits (60), Expect = 7.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKE 201
E E ++E ++E EEE + E E++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 27.1 bits (60), Expect = 8.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E ++E ++E EEE + E E + +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
Score = 27.1 bits (60), Expect = 8.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEE 197
+ E E ++E ++E EEE + E E++ +
Sbjct: 367 IWEGELKDERSDDESEEESDLESSEDKND 395
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 27.4 bits (61), Expect = 1.5
Identities = 7/36 (19%), Positives = 33/36 (91%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E EE E+++++E++++++++++++++++++ E++E
Sbjct: 45 IEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 28.8 bits (65), Expect = 1.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+++ + EEE+ E+++E EE E K K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 28.5 bits (64), Expect = 2.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+++ + EEE+ E+++E EE + + K K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHK 173
Score = 28.5 bits (64), Expect = 2.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
+++ + EEE+ E+++E EE E + K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 28.5 bits (64), Expect = 2.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+++ + EEE+ E+++E EE E + + K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHK 173
Score = 27.7 bits (62), Expect = 3.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
++ + EEE+ E+++E EE E + + K
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSNGPKVHK 173
Score = 27.7 bits (62), Expect = 3.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEE 195
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 3.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEE 196
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 3.6
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+++ + EEE+ E+++E EE E + K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 27.7 bits (62), Expect = 3.8
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+++ + EEE+ E+++E EE E + K K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHK 173
Score = 27.3 bits (61), Expect = 4.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+++ + EEE+ E+++E EE E + + K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHK 173
Score = 27.3 bits (61), Expect = 5.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEE 191
K + EEE+ E+++E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSN 167
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++E+ +++EE + E E+E E + E ++ EEE + K
Sbjct: 439 VMMDEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 27.1 bits (60), Expect = 8.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 179 EEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+E+ +++EE + E E+E E + E K
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAM 472
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 29.3 bits (66), Expect = 1.6
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +E + E ++ +EE+ + E K EE K+ + K K
Sbjct: 370 SSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENGKQK 416
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K EE E+E+E+EE + E E+E E E++K E + K+
Sbjct: 77 LKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKE 120
Score = 28.5 bits (64), Expect = 1.6
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 162 LCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L K ++EE E+E+E+EE + E E+E E EK++ E K + + KI
Sbjct: 72 LRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKI 124
Score = 27.3 bits (61), Expect = 3.5
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
KL ++ + ++EE E+E+E+EE + E EKE E +KK+
Sbjct: 71 KLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKK 112
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 29.2 bits (66), Expect = 1.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+L EEE E +++ E+ E+E+ EE E+ +E +E K
Sbjct: 310 RLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSK 350
Score = 28.8 bits (65), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
L+E E EEE E +++ E+ E+E+ +E E+ + RK
Sbjct: 302 SLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELN 348
Score = 28.8 bits (65), Expect = 2.3
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K E EEE E +++ E+ E+E+ EE E+ ++++ N
Sbjct: 304 KEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSK 350
Score = 27.3 bits (61), Expect = 5.9
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+LEE E+ EE +E + EE +++ E+ E++ E+ K K
Sbjct: 332 RLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSNK 372
Score = 27.3 bits (61), Expect = 6.8
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E+ EE E+ EE +E + EE +++ E+ EK+ ++ K+
Sbjct: 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSN 371
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 29.1 bits (66), Expect = 1.6
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
K+E +++EE E++E+E +E+ +E+EEE EE +++ +I
Sbjct: 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141
>gnl|CDD|130728 TIGR01667, YCCS_YHJK, integral membrane protein, YccS/YhfK family.
This model represents two clades of putative
transmembrane proteins including the E. coli YccS and
YhfK proteins. The YccS hypothetical equivalog
(TIGR01666) is found in beta and gamma proteobacteria,
while the smaller YhfK group is only found in E. coli,
Salmonella and Yersinia. TMHMM on the 19 hits to this
model shows a consensus of 11 transmembrane helices
separated into two clusters, an N-terminal cluster of 6
and a central cluster of 5. This would indicate two
non-membrane domains one on each side of the membrane.
Length = 701
Score = 29.4 bits (66), Expect = 1.6
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 156 GHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
L ++ ++ + E +EE + E +E + E
Sbjct: 630 AELLQACEIVAKAIQRCQARLEYDEEALAGDANIMEAQEMQPHE 673
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 28.9 bits (65), Expect = 1.7
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 168 KLEEEEEEEEE----EEEEEEEEEEEEEEEEEEEEEKEE 202
KLEE++ E + E EEEEEE EEEEE +E E+
Sbjct: 143 KLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 27.7 bits (62), Expect = 3.7
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E + E +E+ E +EE +K E K K
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEK 147
Score = 27.7 bits (62), Expect = 3.8
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 168 KLEEEEEEEEEEE----EEEEEEEEEEEEEEEEEEEKEEEE 204
L+ EE++ E + E EEEEEE EEEEE KE E+
Sbjct: 141 TLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 27.7 bits (62), Expect = 4.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEE 193
++ E EEEEEE EEEEE +E E+
Sbjct: 155 STVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 27.3 bits (61), Expect = 4.7
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E +E+ E +EE ++ E + EE++
Sbjct: 115 ENLNDEDTSSESSYGFKEESKKGSAETLKLEEKD 148
Score = 27.3 bits (61), Expect = 5.7
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEE 194
G + E EEEEEE EEEEE +E E+
Sbjct: 154 GSTVDLEPPEEEEEEIAEEEEEVKEPED 181
Score = 27.3 bits (61), Expect = 6.2
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 161 SLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E++ E + E EEEEEE EEEEE +E E
Sbjct: 137 GSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPE 180
Score = 27.0 bits (60), Expect = 7.8
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E + E +E+ E +EE ++ E K +
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEE 146
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 28.4 bits (64), Expect = 1.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EEE+ +E EEE E E E+EE K+K++ K+
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKLLKKV 122
Score = 28.0 bits (63), Expect = 1.9
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EEE+ +E EEE E E E EE +EKE+ KK
Sbjct: 87 EEEQLRRIKELEEELREVEAEREEAVKEKEKLLKK 121
Score = 26.1 bits (58), Expect = 8.3
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E EEE+ +E EEE E E E EE KE+E+ KK
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKLLKK 121
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 28.9 bits (65), Expect = 1.7
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
L+E + +E+ EE E+ EE+ ++ E+EE+ +E +K+
Sbjct: 88 LDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKE 126
Score = 28.1 bits (63), Expect = 2.6
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ +E + +E+ EE E+ EE+ ++ EKEE+ + ++ + +
Sbjct: 85 PDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYL 130
Score = 27.4 bits (61), Expect = 4.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ +E+ EE E+ EE+ ++ E+EE+ E E++
Sbjct: 89 DEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYL 130
Score = 27.4 bits (61), Expect = 5.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ +E+ EE E+ EE+ ++ E+EE+ +E EKE +
Sbjct: 92 LDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 28.8 bits (65), Expect = 1.7
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E EE+ EE E EEE E E+ E EE E+K EE +KK ++
Sbjct: 5 EAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQ 46
Score = 26.9 bits (60), Expect = 7.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E EE+ EE E EEE E E+ E EE EKK + K
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEK 42
Score = 26.5 bits (59), Expect = 8.7
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E EE+ EE E EEE E E+ E +E E+K ++ + K
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKK 43
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 29.1 bits (66), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+EE EE EE E E+ E ++ E+ E+ EEE
Sbjct: 332 IEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEE 367
Score = 28.3 bits (64), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE EE E E+ E ++ E+ EE EE+++++
Sbjct: 337 REEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDD 371
Score = 28.3 bits (64), Expect = 3.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+ EE EE E E+ E ++ E+ EE E+E+++
Sbjct: 334 ENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDD 370
Score = 27.5 bits (62), Expect = 5.7
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 168 KLEEEEEEEEEEEE---EEEEEEEEEEEEEEEEEEKEEEE 204
+ E EE E E+ E ++ E+ EE EEE++++ +++
Sbjct: 337 REEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDW 376
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 29.3 bits (65), Expect = 1.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E +++EE+E E + +EEE ++E+E+E+ +K
Sbjct: 1024 ERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIH 1062
Score = 27.8 bits (61), Expect = 4.8
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E +++EE+E E + +EEE K+E+E++++ RK
Sbjct: 1024 ERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTI 1061
Score = 27.0 bits (59), Expect = 9.0
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+++EE+E E + +EEE ++E+E E++ + ++
Sbjct: 1027 KDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEM 1068
Score = 27.0 bits (59), Expect = 9.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E +++EE+E E + +EEE ++EKE E++ +K +
Sbjct: 1024 ERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHD 1063
Score = 27.0 bits (59), Expect = 9.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 167 GKLEEEEEEEEEEEEEEEE--------EEEEEEEEEEEEEEKEEEEKKKKRRK 211
G E+ E+EE + E EE E EE +E + E E+EE +KK+ +
Sbjct: 602 GNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELR 654
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 29.3 bits (65), Expect = 1.8
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E+ ++ + + + EE++++ EEE+ + K+ + KK
Sbjct: 104 EQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKK 141
Score = 28.1 bits (62), Expect = 3.9
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E E ++ E+ ++ + + + EE++++ EEE+ K K+
Sbjct: 94 SQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKD 135
Score = 27.7 bits (61), Expect = 5.8
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++ E+ ++ + + + EE++++ EEE+ K K K
Sbjct: 100 QDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGK 137
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 27.3 bits (61), Expect = 1.9
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE EE++E+ + + + +KKK++K
Sbjct: 16 LGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLK 50
Score = 25.7 bits (57), Expect = 7.1
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE EE++E+ + + + +++++KKK ++K+K
Sbjct: 16 LGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSK 54
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
GW L+E + E + + EE EEEE + +E ++ + K
Sbjct: 269 GWDWLQELIDGTIEGKSDAGEEGEEEELSTDADEYEKGPPRIAPSDK 315
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 27.7 bits (62), Expect = 1.9
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 49 TDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGS 84
Score = 27.3 bits (61), Expect = 2.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
K++E++EE EE++EE E ++EEE E+ +
Sbjct: 51 KVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 27.3 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
LE ++ +E++EE EE++EE E ++EEE E+ +
Sbjct: 45 YLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVD 81
Score = 26.9 bits (60), Expect = 3.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++ +E++EE EE++EE E ++EEE E +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGS 84
Score = 26.1 bits (58), Expect = 6.4
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
++ +E++EE EE++EE E ++EEE ++ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGS 84
Score = 25.7 bits (57), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
K EE EE++EE E ++EEE E+ +
Sbjct: 54 EKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 25.3 bits (56), Expect = 9.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
+E++EE EE++EE E ++EEE E+ +
Sbjct: 52 VKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
>gnl|CDD|218660 pfam05620, DUF788, Protein of unknown function (DUF788). This
family consists of several eukaryotic proteins of
unknown function.
Length = 166
Score = 28.5 bits (64), Expect = 1.9
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 189 EEEEEEEEEEEKEEEEKKKKRRKNK 213
+ E E K + ++K ++R K
Sbjct: 142 PSSQGAETNETKSKRQEKLEKRGEK 166
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 28.5 bits (64), Expect = 1.9
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
KL ++ E EEE EE EE EE E+ +EE K E E+ + K
Sbjct: 6 KLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKA 52
Score = 28.5 bits (64), Expect = 2.1
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E EEE EE EE EE E+ +EE + E EE EE +K ++
Sbjct: 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKE 55
Score = 28.1 bits (63), Expect = 2.5
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
L E EEE EE EE EE E+ +EE + E E+ EE +K K
Sbjct: 12 LREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEK 54
Score = 27.3 bits (61), Expect = 4.6
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EEE EE EE EE E+ +EE + E EE EE +K ++ +
Sbjct: 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERE 59
Score = 27.0 bits (60), Expect = 6.3
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE EE E+ +EE + E EE EE + E+E +++++R
Sbjct: 23 LEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQR 62
>gnl|CDD|219290 pfam07084, Spot_14, Thyroid hormone-inducible hepatic protein Spot
14. This family consists of several thyroid
hormone-inducible hepatic protein (Spot 14 or S14)
sequences. Mainly expressed in tissues that synthesise
triglycerides, the mRNA coding for Spot 14 has been
shown to be increased in rat liver by insulin, dietary
carbohydrates, glucose in hepatocyte culture medium, as
well as thyroid hormone. In contrast, dietary fats and
polyunsaturated fatty acids, have been shown to decrease
the amount of Spot 14 mRNA, while an elevated level of
cAMP acts as a dominant negative factor. In addition,
liver-specific factors or chromatin organisation of the
gene have been shown to contribute to the regulation of
its expression. Spot 14 protein is thought to be
required for induction of hepatic lipogenesis.
Length = 160
Score = 28.2 bits (63), Expect = 2.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
WG L +E + + E E+E++ E EE EEEE E +
Sbjct: 81 WGLLRQEWQAKAAGGEMSEKEKDANESEEAEEEELGELD 119
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 29.0 bits (65), Expect = 2.0
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 163 CHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ + E++EEE E E E E++EE EE +
Sbjct: 131 LASYWYWDGEDDEEEALEVLEGEGEDDEEAAAEEYFSRVRPAL 173
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 28.8 bits (65), Expect = 2.0
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 169 LEEEEEEEEEEEEEEEE-----EEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EEEE E+EE EE +E EE E +E E + EEE++ K K
Sbjct: 77 KEEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVFSKIK 126
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 28.7 bits (64), Expect = 2.0
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
K ++ E E E+E E+E EEE EE+E E+K EE
Sbjct: 250 WKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 28.3 bits (63), Expect = 2.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E E + ++ E E E+E E+E EEE EE+E + K
Sbjct: 244 RREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDK 283
Score = 27.6 bits (61), Expect = 4.4
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++ E E E+E E+E EEE EE+E E + EE
Sbjct: 253 DKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 27.6 bits (61), Expect = 4.6
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
K+ E E + ++ E E E+E E+E EEE EE++ + + +
Sbjct: 242 KIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 27.2 bits (60), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E +E+ E E + ++ E E E+E E E EE+ + ++N+
Sbjct: 238 EVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENED 282
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 29.1 bits (66), Expect = 2.1
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++ E+E+++ EE + E + E E+ +E KK +
Sbjct: 436 AEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEAR 480
Score = 26.8 bits (60), Expect = 9.2
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E+++ EE + E + E E+ + +K + R K
Sbjct: 440 AIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAK 483
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 28.7 bits (64), Expect = 2.1
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE----EKKKKRRKNKI 214
KLEE ++E+EE +E EE E E EE +E + E E E+ K+ ++
Sbjct: 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEV 193
>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term.
The broad host-range plasmid RK2 is able to replicate in
and be inherited in a stable manner in diverse
Gram-negative bacterial species. It encodes a number of
co-ordinately regulated operons including a central
control korF1 operon that represses the kfrA operon. The
KfrA polypeptide is a site-specific DNA-binding protein
whose operator overlaps the kfrA promoter. The
N-terminus, containing an helix-turn-helix motif, is
essential for function. Downstream from this family is
an extended coiled-coil domain containing a heptad
repeat segment which is probably responsible for
formation of multimers, and may provide an example of a
bridge to host structures required for plasmid
partitioning.
Length = 120
Score = 27.6 bits (62), Expect = 2.1
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
L E E E E E E E E EE+ E
Sbjct: 86 LAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 26.1 bits (58), Expect = 7.1
Identities = 13/35 (37%), Positives = 13/35 (37%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EE E E E E E E E E EEE
Sbjct: 83 EERLAAARAAAEAERAELEAELAEAAAEAEALEEE 117
Score = 26.1 bits (58), Expect = 8.8
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E E E E E E E E E+E E
Sbjct: 87 AAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 28.4 bits (64), Expect = 2.1
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
KLE+E EE EE+ E+ E+ E+EEE E EEE
Sbjct: 208 KLEKEAEEIEEQLEKLAEQLEKEEERVEREEE 239
Score = 27.3 bits (61), Expect = 5.8
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
++ E+E EE EE+ E+ E+ E+EEE E+EEE
Sbjct: 207 DKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEPP 241
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 28.1 bits (63), Expect = 2.2
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 180 EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++EE+ EE+ +E + E E+ + N
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFR 49
Score = 27.4 bits (61), Expect = 4.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
++EE+ EE+ +E + E EE K
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKY 46
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E E+EEEEE+E+++++ ++E+E+E+ EE
Sbjct: 136 ESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAA 171
Score = 28.2 bits (63), Expect = 3.8
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ E E+EEEEE+E+++++ ++E+E+E+ E+ ++ +
Sbjct: 133 EDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGV 177
Score = 27.1 bits (60), Expect = 8.2
Identities = 12/31 (38%), Positives = 25/31 (80%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
+ E+ E E+EEEEE+E+++++ ++E+E+E
Sbjct: 130 RYREDPESEDEEEEEDEDDDDDGSDDEDEDE 160
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 28.8 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEE---EEEEEEKEEEEKKKKRRKNKI 214
+ W EEE++ ++ ++ E E EE E EE E EE K++R +K+
Sbjct: 409 YSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKL 462
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 28.9 bits (66), Expect = 2.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEE 198
E++ E EE EEEE E EEE
Sbjct: 329 REKKAAELAAEEAEEEEAAEPEEES 353
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.0 bits (65), Expect = 2.3
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E + + E E + + E ++E E
Sbjct: 889 EGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAAL 928
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 29.0 bits (65), Expect = 2.3
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 162 LCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
C + E+E EEE + ++EEE +E E++ + K
Sbjct: 388 YCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKE 438
Score = 28.3 bits (63), Expect = 3.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ K +E+ E+E EEE + ++EEE ++ EEK
Sbjct: 387 AYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKI 428
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 2.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+EE+ E EE E E E E EE+ E E EEE ++ +
Sbjct: 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573
Score = 28.9 bits (65), Expect = 2.7
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ E E EE+ E EE E E E E EEK E + +
Sbjct: 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
Score = 28.1 bits (63), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+ EE E E E E EE+ E E EEE EE EE + + ++
Sbjct: 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584
Score = 28.1 bits (63), Expect = 4.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EE+ E EE E E E E EE+ E + EEE ++ R +
Sbjct: 533 EEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573
Score = 27.7 bits (62), Expect = 5.5
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE E EE+ E E EEE EE EE E K E K++ +I
Sbjct: 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERI 594
Score = 27.7 bits (62), Expect = 6.4
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+ E EE E E E+ EEE EE EE E+ E+ + + R ++
Sbjct: 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERL 514
Score = 26.9 bits (60), Expect = 9.2
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E EE E E E+ EEE EE EE E E+ E E + +R + +
Sbjct: 474 RERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEER 517
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 27.6 bits (61), Expect = 2.4
Identities = 23/39 (58%), Positives = 29/39 (74%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
++E EEEEE +E++EEEE E EEEE EEE+E E KR
Sbjct: 48 DDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKR 86
Score = 26.8 bits (59), Expect = 3.8
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+E EEEEE +E++EEEE E EEEE EEEEE E K+
Sbjct: 49 DEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKR 86
Score = 26.8 bits (59), Expect = 4.0
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
G E ++E EEEEE +E++EEEE E EEEE EE+EE E +R
Sbjct: 43 GAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKR 86
Score = 26.5 bits (58), Expect = 5.5
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
G ++EEEEE +E++EEEE E EEEE EEEEE E
Sbjct: 46 EGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEG 81
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 28.4 bits (64), Expect = 2.4
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 156 GHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEE 193
HL + + EE EEEE E EEE +
Sbjct: 262 AHLKTVNWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 27.3 bits (61), Expect = 6.3
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 157 HLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
+ L+ E EE EEEE E EEE +
Sbjct: 258 EPIDAHLKTVNWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 27.3 bits (61), Expect = 7.3
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
+ + E EE EEEE E EEE +
Sbjct: 266 TVNWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 27.3 bits (61), Expect = 7.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKKKKR 209
E EE EEEE E +EE K
Sbjct: 274 EPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 26.9 bits (60), Expect = 7.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEE 202
E EE EEEE E EEE K
Sbjct: 274 EPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 26.5 bits (59), Expect = 9.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEE 203
E EE EEEE E EEE +
Sbjct: 274 EPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 28.6 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+ E EE E + E + EE +E EK++EE +K +K
Sbjct: 104 DRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKE 146
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 28.5 bits (63), Expect = 2.5
Identities = 10/44 (22%), Positives = 29/44 (65%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E +E++E+ EE E + E++E+ ++ + + + +++ ++ NK
Sbjct: 155 QENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNK 198
Score = 28.1 bits (62), Expect = 3.5
Identities = 10/45 (22%), Positives = 31/45 (68%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
K +++E +E++E+ EE E + E++E+ ++ + + + +++ ++ N
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPN 195
Score = 27.3 bits (60), Expect = 6.2
Identities = 9/42 (21%), Positives = 29/42 (69%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
K + +++E +E++E+ EE E + E++E+ ++ + + + +++
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQ 190
Score = 26.9 bits (59), Expect = 8.4
Identities = 9/43 (20%), Positives = 29/43 (67%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
++E +E++E+ EE E + E++E+ ++ + + + +++ ++ N
Sbjct: 154 KQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNN 196
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 27.6 bits (62), Expect = 2.6
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 16/59 (27%)
Query: 170 EEEEEEEEEEEEEEEEEEEE----------------EEEEEEEEEEKEEEEKKKKRRKN 212
++EEEEE+EE+E+E E +E+ +E + EKE+++KKKK KN
Sbjct: 31 DKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELKN 89
Score = 26.9 bits (60), Expect = 4.6
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 15/59 (25%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEE---------------EEEEEEEKEEEEKKKKRRKNK 213
EE ++EEEEE+EE+E+E E +E+ +E K E++KKK++K +
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKE 86
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 28.7 bits (65), Expect = 2.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 162 LCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L +L EE + E E E EE E E ++E E+ E
Sbjct: 324 LLRALAELLEETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVR 366
Score = 26.7 bits (60), Expect = 8.8
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ + E E E EE E E ++E E+ E ++++
Sbjct: 334 ETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
>gnl|CDD|234838 PRK00784, PRK00784, cobyric acid synthase; Provisional.
Length = 488
Score = 28.5 bits (65), Expect = 2.7
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 56 AMALCKIFKDKGEKKNPFDIAQSIA--SVVTSE 86
LC+I +G + PF AQ+++ S VT++
Sbjct: 20 VAGLCRILARRGYRVAPFK-AQNMSLNSAVTAD 51
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 28.4 bits (63), Expect = 2.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K+EEE +E+ + E+ ++EE+ +E + +E++
Sbjct: 100 KVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLA 140
Score = 27.2 bits (60), Expect = 6.8
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+ E+E E+ +E E+ E + E + E+ N +
Sbjct: 178 KEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPV 218
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 27.9 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
G LEE + EEE+E + +E E E E ++ EE
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEE 132
Score = 26.8 bits (59), Expect = 7.2
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEE-----EEEEEEEEEEKEEEE 204
EE + EEE+E + +E E E E ++ EE
Sbjct: 89 SHLQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPG 134
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 28.7 bits (65), Expect = 2.8
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E+E ++ EE ++ + EEEEEEEEEE + K+
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
Score = 28.3 bits (64), Expect = 3.2
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
W K+ EE ++ + EEEEEEEEEE E +E
Sbjct: 516 WQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
Score = 27.5 bits (62), Expect = 5.5
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E+E ++ EE ++ + EEEEEEEEEE E K+
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
Score = 27.1 bits (61), Expect = 7.1
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E+E ++ EE ++ + EEEEEEEEEE E K+
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
>gnl|CDD|153128 cd02437, CCC1_like_1, CCC1-related protein family. CCC1_like_1:
This is a protein family closely related to CCC1, a
family of proteins involved in iron and manganese
transport. Yeast CCC1 is a vacuole transmembrane protein
responsible for the iron and manganese accumulation in
vacuole. .
Length = 175
Score = 28.2 bits (63), Expect = 2.8
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 158 LSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
L + G EE EE+E+ E+ EE ++
Sbjct: 40 LGGAFALGISNGLGAAVAEEGSLRGMLEEKEKILLRLEQMLTSTREELAIRK 91
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 28.1 bits (63), Expect = 2.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
GK ++ EE E + EEEE EE + + + +K
Sbjct: 28 GKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEK 68
Score = 26.6 bits (59), Expect = 9.5
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ + ++ EE E + EEEE EE + K +
Sbjct: 25 IEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEK 68
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 28.6 bits (64), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE E + + ++ EE +E EE EEE K KKR
Sbjct: 287 EEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKR 326
Score = 27.0 bits (60), Expect = 8.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
EE E + + ++ EE +E E+ EEE K K+R
Sbjct: 287 EEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKR 326
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 28.4 bits (64), Expect = 3.0
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E E + E E E+ EE EE E+ KE++ KKKK++K
Sbjct: 406 ESVEAQLENAESLEDLEEIREELIEQGYLKEKKRKKKKKKK 446
Score = 28.4 bits (64), Expect = 3.3
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 169 LEEEEEEEE--EEEEEEEEEEEEEEEEEEEEEEKEEE---EKKKKRRKNK 213
+EE +EE E E E + E E E+ EE EE E+ ++KK+++K K
Sbjct: 395 IEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQGYLKEKKRKKKKK 444
Score = 28.0 bits (63), Expect = 4.3
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LE E + E E E+ EE EE E+ ++++ +KKKK++K
Sbjct: 404 YLESVEAQLENAESLEDLEEIREELIEQGYLKEKKRKKKKKKKK 447
Score = 26.8 bits (60), Expect = 9.9
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE-----KKKKRRKNK 213
+ EE +EE E E E + E E E+ EE +EE K+KKR+K K
Sbjct: 393 EQIEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQGYLKEKKRKKKK 443
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 28.5 bits (64), Expect = 3.0
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 166 WGKLEEEEEEEEEEEEE-----EEEEEEEEEEEEEEEEEKEEEE 204
W E EE E E E EEE E E++ ++EE EEE
Sbjct: 400 WYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 27.5 bits (61), Expect = 3.0
Identities = 12/45 (26%), Positives = 32/45 (71%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E++E ++ + E+ E+E + ++E E+ E ++++K+++RR+ K+
Sbjct: 76 EKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKKL 120
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 28.4 bits (64), Expect = 3.1
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE EEE EE EEE +E E E+E E EKK +K K
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAK 100
Score = 28.0 bits (63), Expect = 3.4
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
LEE EEE EE EEE +E E E+E E E++ E++ KK +K K
Sbjct: 63 LEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGK 107
Score = 27.6 bits (62), Expect = 4.7
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE EEE EE EEE +E E E+E + E++ +K+ K I
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAI 103
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 26.2 bits (58), Expect = 3.2
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
KLEE+E+ E E+EE E ++EEEEE ++ KE
Sbjct: 16 KLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
Score = 25.8 bits (57), Expect = 4.1
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E+ E +++ EE+E+ E E+EE E ++E+EEE K+ R+
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRK 48
Score = 24.7 bits (54), Expect = 9.5
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E+ E +++ EE+E+ E E+EE E +++EEEE K+ RK
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 170 EEEEEEEEEEEEEEEEEEEE 189
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 171 EEEEEEEEEEEEEEEEEEEE 190
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 172 EEEEEEEEEEEEEEEEEEEE 191
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 173 EEEEEEEEEEEEEEEEEEEE 192
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 174 EEEEEEEEEEEEEEEEEEEE 193
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 175 EEEEEEEEEEEEEEEEEEEE 194
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 176 EEEEEEEEEEEEEEEEEEEE 195
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 177 EEEEEEEEEEEEEEEEEEEE 196
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 178 EEEEEEEEEEEEEEEEEEEE 197
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 179 EEEEEEEEEEEEEEEEEEEE 198
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.2
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 180 EEEEEEEEEEEEEEEEEEEE 199
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 26.9 bits (60), Expect = 3.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEE 188
E ++EE++EEEEEE +++
Sbjct: 76 AAAAEAKKEEKKEEEEEESDDD 97
Score = 25.7 bits (57), Expect = 8.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 184 EEEEEEEEEEEEEEEEKEEE 203
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 27.8 bits (62), Expect = 3.2
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
K E E E + +EEE + +E E++ EE +E+ +K +
Sbjct: 42 LQKAERERLVNEAQARKEEEWKLKEWIEKKIEEAREDAVRKSR 84
Score = 27.0 bits (60), Expect = 6.4
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 168 KLEEEEEEEEEEEE--EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEE ++ E E E + +EEE + +E E+K EE ++ RK++
Sbjct: 37 ELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEAREDAVRKSR 84
Score = 26.7 bits (59), Expect = 8.8
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 167 GKLEEEEEEEEEE-EEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
GK+E + E EE ++ E E E + +EEE K +E +KK
Sbjct: 29 GKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIE 73
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 28.0 bits (63), Expect = 3.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEE 194
+E ++E +E EEE+ +EEEEE
Sbjct: 213 IENHLQQESSLNDETEEEQPDEEEEE 238
Score = 27.6 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEE 195
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 27.6 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEE 196
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 27.6 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEE 197
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 27.6 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEE 198
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 27.6 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEE 199
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis
[Nucleotide transport and metabolism].
Length = 262
Score = 28.0 bits (63), Expect = 3.3
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 91 PSLAKVIDKIEVAKPGFVNVFLSRVYAGEQIKDIIVNGVQPPTLNKKLRVLVDFSSPNIA 150
PS A + + + + V V L RV A D I++ + P + +L + + A
Sbjct: 27 PSPAVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLIP----LGVTLLPNTAGCRTA 82
Query: 151 KE-MHVGHLSR-SLCHGWGKLE 170
+E + L+R +L W KLE
Sbjct: 83 EEAVRTARLAREALGTNWIKLE 104
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37 pfam03234.
Length = 89
Score = 26.9 bits (60), Expect = 3.3
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
+ E E+E +E EEE EEE E+EE EEE E
Sbjct: 57 PNAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 26.5 bits (59), Expect = 4.4
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ E E+E +E EEE EEE E+EE E+E+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 25.4 bits (56), Expect = 9.2
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
+ E E+E +E EEE EEE E+EE EEE++
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 28.4 bits (64), Expect = 3.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
+ + E EEE+E + EEE++E + E KE
Sbjct: 482 GDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
Score = 28.0 bits (63), Expect = 4.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+ + E EEE+E + EEE++E + E K+
Sbjct: 482 GDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
Score = 28.0 bits (63), Expect = 4.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
K + + E EEE+E + EEE++E + E ++ +K K R
Sbjct: 481 KGDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKDVR 523
Score = 26.8 bits (60), Expect = 8.9
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE---EKEEEEKKKKRRKN 212
G L+ E EEE+E + EEE++E + E +E +K ++ + R +
Sbjct: 482 GDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKDVRLSHRLTD 530
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 28.0 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
KL EE+EE+ E E E E+EE E +E
Sbjct: 219 KLNEEDEEDAESESSFESSNEDEEGSSSEADE 250
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 3.4
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E E EE+ +E++ EE++E E+E E KE+ E K K K
Sbjct: 15 KEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
Score = 26.8 bits (59), Expect = 8.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
K E +E + ++E E EE+ +E++ EEK+E +K+ K
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIK 45
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. This
eukaryotic domain is found at the C-terminus of 26S
proteasome regulatory subunits such as the non-ATPase
Rpn3 subunit which is essential for proteasomal
function. It occurs together with the PCI/PINT domain
(pfam01399).
Length = 68
Score = 26.1 bits (58), Expect = 3.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
E++EEE+ EE E ++ E E +E E +
Sbjct: 35 DKEKKEEEKAEEARERDQLELELAKELSEGD 65
Score = 26.1 bits (58), Expect = 3.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
+E++EEE+ EE E ++ E E +E E +
Sbjct: 36 KEKKEEEKAEEARERDQLELELAKELSEGD 65
Score = 25.7 bits (57), Expect = 4.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E++EEE+ EE E ++ E E KE E
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSE 63
Score = 25.7 bits (57), Expect = 5.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
K EEE+ EE E ++ E E +E E + ++
Sbjct: 38 KKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 25.4 bits (56), Expect = 6.5
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
++E++EEE+ EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.4 bits (63), Expect = 3.5
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
++ +EE + ++ + + ++E + E+E E +E E +KKR
Sbjct: 291 KKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKR 330
>gnl|CDD|219175 pfam06782, UPF0236, Uncharacterized protein family (UPF0236).
Length = 482
Score = 28.4 bits (63), Expect = 3.6
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 111 FLSRVYAGEQIKDIIVNGVQPP----TLNKKLRVLVDFSSPNIAKEMH--VGHLSRSLCH 164
+L Y E I+ II+NG + ++AKE+ + H R
Sbjct: 250 YLENEYDYEPIRKIIINGDGASWIKEGREWGKKACYQLDRFHLAKELLKCLSHHPRWRED 309
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
L + ++E EE ++E++E++ E
Sbjct: 310 ARKALAKGDKEGLLVILEEAVGTAKDEKKEKQIAE 344
>gnl|CDD|192445 pfam10018, Med4, Vitamin-D-receptor interacting Mediator subunit 4.
Members of this family function as part of the Mediator
(Med) complex, which links DNA-bound transcriptional
regulators and the general transcription machinery,
particularly the RNA polymerase II enzyme. They play a
role in basal transcription by mediating activation or
repression according to the specific complement of
transcriptional regulators bound to the promoter.
Length = 176
Score = 27.8 bits (62), Expect = 3.6
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 152 EMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
EM G L++S +E + EEEEE + E E + EEE+E E +E +
Sbjct: 124 EMRRGLLAQSSLLSKEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 28.2 bits (62), Expect = 3.7
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+EE EE EE EE EE EE EE EE EE + + N+
Sbjct: 1088 VEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNE 1132
Score = 28.2 bits (62), Expect = 3.9
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+EE EE EE EE EE EE ++E EE EE
Sbjct: 1099 VEENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
Score = 28.2 bits (62), Expect = 4.1
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
++EE EE EE EE EE EE EE ++E EE ++
Sbjct: 1094 EIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
Score = 27.4 bits (60), Expect = 6.5
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+EE EE EE EE EE ++E EE EE +E
Sbjct: 1103 VEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
Score = 27.1 bits (59), Expect = 9.5
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
H +EE+ EE EE+ EE EE EE EE EE EE ++ +N
Sbjct: 942 HAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEEN 990
Score = 27.1 bits (59), Expect = 9.5
Identities = 19/42 (45%), Positives = 22/42 (52%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE EE EE EE EE EE EE EE EE ++ +N
Sbjct: 1085 EENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDEN 1126
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 28.4 bits (64), Expect = 3.7
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
G +LE E E+EE E+ E E+ EE+EEE
Sbjct: 845 GGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 27.6 bits (62), Expect = 6.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
E E E+EE E+ E E+ EE+EEE
Sbjct: 850 EGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
Score = 26.8 bits (60), Expect = 9.6
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E E E E+EE E+ E E+ EEKEEE
Sbjct: 848 ELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 27.4 bits (61), Expect = 3.7
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
KLEE+E++E EE +E+ E EE ++ E K E++ + ++
Sbjct: 43 KLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEK 84
Score = 27.1 bits (60), Expect = 3.8
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 163 CHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+L +E+ E E++ EE+E++E EE +E+ + EE+++K+
Sbjct: 24 SQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQ 70
Score = 27.1 bits (60), Expect = 4.3
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E+ E E++ EE+E++E EE +E+ E EE ++K+ K+
Sbjct: 32 SKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKL 76
Score = 25.9 bits (57), Expect = 9.7
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E E++ EE+E++E EE +E+ E EE +++ E +K +K
Sbjct: 36 RRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQK 79
>gnl|CDD|182033 PRK09697, PRK09697, protein secretion protein GspB; Provisional.
Length = 139
Score = 27.4 bits (60), Expect = 3.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EEE+E E E+EE EE +E+ ++R KN +
Sbjct: 91 ESVEEEDEPGVAVENAPSSSEDEENTVEESDEKAGLRERVKNAL 134
>gnl|CDD|225271 COG2407, FucI, L-fucose isomerase and related proteins
[Carbohydrate transport and metabolism].
Length = 470
Score = 28.2 bits (63), Expect = 3.8
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++ EE + E ++E E + E+ + + +K R
Sbjct: 199 VDLEEIFRRVDNESVDDERVERALKWLEKNFRVGQVPAEKLRL 241
>gnl|CDD|165339 PHA03046, PHA03046, Hypothetical protein; Provisional.
Length = 142
Score = 27.4 bits (61), Expect = 3.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+++EE + E E+ EE+ ++ + EEEE +N+I
Sbjct: 11 DDDEENDRNEHREKTSEEDGHYKKRLDVEEEEPNLINIRNEI 52
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37.
Length = 93
Score = 26.6 bits (59), Expect = 3.8
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 198
+E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 62 NAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 25.8 bits (57), Expect = 8.0
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E+E E +E +E+ E EEE E+E+EE+E++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
>gnl|CDD|221165 pfam11680, DUF3276, Protein of unknown function (DUF3276). This
bacterial family of proteins has no known function.
Length = 123
Score = 27.3 bits (61), Expect = 3.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
++E+ EE E ++ E++E EE E E+ K + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEIFTD 120
Score = 26.1 bits (58), Expect = 9.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+E+ EE E ++ E++E EE E E+ + + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEIFTDI 121
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 28.1 bits (62), Expect = 3.9
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LE+ EEE + + + ++ EEEE E +EE E+ EE+KK+ K
Sbjct: 223 LEKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEK 265
Score = 27.7 bits (61), Expect = 5.6
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EEEE E +EE EE EE+++E E+ E +E+K K +
Sbjct: 242 EEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEE 280
Score = 27.7 bits (61), Expect = 6.2
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
G EEEE E +EE EE EE+++E E+ E +EE+ K
Sbjct: 237 GDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFK 276
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 27.3 bits (61), Expect = 4.0
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+++ E + +EE E ++E EE++K ++ +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKE 69
>gnl|CDD|201616 pfam01133, ER, Enhancer of rudimentary. Enhancer of rudimentary
is a protein of unknown function that is highly
conserved in plants and animals. This protein is found
to be an enhancer of the rudimentary gene.
Length = 103
Score = 26.9 bits (60), Expect = 4.0
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 8/38 (21%)
Query: 48 FGDFQ-CNDAM-ALCKIFKDKGEKKNP------FDIAQ 77
F D++ N A+ +CK++++ ++KNP +DI+Q
Sbjct: 19 FMDYESVNQALEGICKLYEEHLKEKNPSAPNITYDISQ 56
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.1 bits (63), Expect = 4.1
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+L E EE E+ E+E +E EE +EE EE E+E E E K++ + KI
Sbjct: 215 ELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
Score = 27.7 bits (62), Expect = 5.4
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++E+ EEE EE +E EE+EE EE +++ K+ ++R ++
Sbjct: 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
Score = 27.3 bits (61), Expect = 6.6
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE+EE EE +++ +E E+ EE EE E EE K KK ++
Sbjct: 334 EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL 377
Score = 27.3 bits (61), Expect = 6.7
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LEE +++ +E E+ EE EE E EE + +KEE E+ KKR
Sbjct: 339 RLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGL 384
Score = 27.3 bits (61), Expect = 8.1
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LE+ E+E +E EE +EE EE E+E E E K + E+K + + +I
Sbjct: 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERI 268
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 27.9 bits (62), Expect = 4.1
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+LE++ EE E+ +E + EEE E+E E+ KEEE
Sbjct: 365 RLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEE 400
Score = 27.1 bits (60), Expect = 9.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEK 200
+EE E+ +E + EEE E+E E+ +EEE
Sbjct: 369 DVEEGEKTIVKEARQIEEELEKEVEKLGKEEES 401
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 28.3 bits (63), Expect = 4.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E + E E +E E+ +E EE+ EEEK KN
Sbjct: 689 ENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKN 731
Score = 27.9 bits (62), Expect = 5.1
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 12/58 (20%)
Query: 168 KLEEEEEEEEEEEEEEEEEE------------EEEEEEEEEEEEKEEEEKKKKRRKNK 213
L +E EE+ EEE++ EE E E E+ K ++++ K
Sbjct: 706 LLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQK 763
Score = 27.2 bits (60), Expect = 7.6
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 169 LEEEEEEEEEEEEEEEEE------------EEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+E EE+ EEE++ EE E E ++ K +K+++ +I
Sbjct: 708 FDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLKAQKQQQKRI 765
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 28.1 bits (63), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEE 188
GKLE E +EE++++++E
Sbjct: 457 GKLEMPGSESVSDEEDDDDDDE 478
Score = 27.4 bits (61), Expect = 7.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
E EE E + E E +EE++ +++E +R
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLYRRT 484
>gnl|CDD|182233 PRK10090, PRK10090, aldehyde dehydrogenase A; Provisional.
Length = 409
Score = 27.8 bits (62), Expect = 4.2
Identities = 22/64 (34%), Positives = 29/64 (45%)
Query: 33 KTASVASTNEKYVHKFGDFQCNDAMALCKIFKDKGEKKNPFDIAQSIASVVTSELATNPS 92
K A T V K +F N+A+A KI + G K F++ V ELA NP
Sbjct: 91 KMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPKGVFNLVLGRGETVGQELAGNPK 150
Query: 93 LAKV 96
+A V
Sbjct: 151 VAMV 154
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 28.0 bits (63), Expect = 4.2
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEE-------EEEKEEEEKKKKRRK 211
L E++++++ E E + E E E EK RRK
Sbjct: 927 LIEDDDDDDALEALIEAPAAARAVQVAEKIVERVVERIIREREKLPDRRK 976
>gnl|CDD|221073 pfam11311, DUF3114, Protein of unknown function (DUF3114). Some
members in this family of proteins with unknown function
are annotated as cytosolic proteins. This cannot be
confirmed.
Length = 252
Score = 27.8 bits (62), Expect = 4.2
Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 19/84 (22%)
Query: 6 SDRMSVRDYLSDVFTHAVQVAFPELGDKTASVASTNEKYVHKF----------------G 49
S ++ D F VQ+AFP S S K +H+F
Sbjct: 51 SPDLAPHDPFWKDFAQLVQLAFP---GDDLSQESELAKRIHQFRYLISSQQAQYVRDHFK 107
Query: 50 DFQCNDAMALCKIFKDKGEKKNPF 73
DA AL K + +
Sbjct: 108 QEGMTDAQALAKYLRSLAWRPADD 131
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 27.8 bits (62), Expect = 4.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
L EE E+E+ E E+ ++ E K + KKK R +
Sbjct: 360 SLLSVEERLPTIEKEDLELYEQRQQLWFFENRKLWQRKKKLREQ 403
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 27.1 bits (60), Expect = 4.4
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 142 VDFSSPNIAKEMHVGHLSRSLC 163
FS +H+GHL R++
Sbjct: 1 TTFSGITPNGYLHIGHL-RTIV 21
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 26.8 bits (60), Expect = 4.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEE 188
++EE++EE EEE ++
Sbjct: 78 AAAAAAAAAKKEEKKEESEEESDD 101
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 27.7 bits (61), Expect = 4.6
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
W + E +E+E ++E+ +E+ + E E++++ KEE +K+ +
Sbjct: 27 WFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETE 69
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 27.9 bits (62), Expect = 4.6
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEK 200
E +++E EE+ E+E +E + K
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 27.5 bits (61), Expect = 6.1
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKK 206
E +++E EE+ E+E +E + K
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 27.8 bits (62), Expect = 4.6
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRR 210
+ E+E+ E ++ + +++EE +++RR
Sbjct: 379 PSRPRSRRDSEDEDTERDDSDSDDEEETPAERRRR 413
>gnl|CDD|205495 pfam13315, DUF4085, Protein of unknown function (DUF4085). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 101 and 269 amino
acids in length.
Length = 208
Score = 27.5 bits (61), Expect = 4.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 162 LCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
G E +EE EEE EEEE + + +EE E+ +E+ K
Sbjct: 12 QISGLLSFPESQEEWEEELREEEESGNDYLQSLKEEIEEIKEDLLK 57
>gnl|CDD|235861 PRK06782, PRK06782, flagellar motor switch protein; Reviewed.
Length = 528
Score = 27.9 bits (62), Expect = 4.8
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 146 SPNIAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+ AKEM R L + + +EEEE EE E E+ E + E +E K+ E
Sbjct: 401 PISEAKEM-----VRLLLYP---MVKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQME 450
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 27.4 bits (61), Expect = 4.8
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+LEE EE E EE+ ++EEEE + E++ +E EEE ++ +
Sbjct: 27 ELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAAS 73
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 27.5 bits (62), Expect = 4.9
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+EE+EEE + E E EE +EEEE EE +EE E+ KK
Sbjct: 102 SDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKE 140
Score = 26.8 bits (60), Expect = 7.5
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
EE+EEE + E E EE +EEEE EE EE EE +K+
Sbjct: 104 EEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKE 140
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 27.7 bits (62), Expect = 4.9
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+E+ E ++E + E E E+E +E E ++
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAEVQR 275
Score = 27.0 bits (60), Expect = 8.5
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
+E+ E ++E + E E E+E E E ++ R +
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAEVQRLTRERG 281
>gnl|CDD|240739 cd12293, RRM_Rrp7p, RNA recognition motif in yeast ribosomal
RNA-processing protein 7 (Rrp7p) and similar proteins.
This subfamily corresponds to the RRM of Rrp7p which is
encoded by YCL031C gene from Saccharomyces cerevisiae.
It is an essential yeast protein involved in pre-rRNA
processing and ribosome assembly, and is speculated to
be required for correct assembly of rpS27 into the
pre-ribosomal particle. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain. .
Length = 96
Score = 26.2 bits (58), Expect = 5.1
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 152 EMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
E H+ L S + EE EE+EE + ++ +
Sbjct: 14 ERHLRKLFGSGGGIIESVVFVEELLEEDEEALDLDDLVAQLVTPPLSTDWTR 65
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 27.3 bits (61), Expect = 5.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E+E E+ EE E+EE+E+ K +K K +
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQEL 41
Score = 26.5 bits (59), Expect = 9.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E+E E+ EE E+EE+E+ + +K +E ++
Sbjct: 2 AEQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQEL 41
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 27.9 bits (62), Expect = 5.1
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
K+EE +E E E E +E+ +EE+ +++E+ ++E+++K
Sbjct: 2573 KIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQ 2617
>gnl|CDD|235551 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 27.9 bits (63), Expect = 5.1
Identities = 12/43 (27%), Positives = 15/43 (34%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE EE +E E EE E + E K+K
Sbjct: 538 LRDQLLEERLEELIAKERLLEGHGLSSEERLELLQLLIELKRK 580
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 27.4 bits (61), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEE 187
GK EEE + E E E+ EE
Sbjct: 238 GKGRRREEENDAEAESEKTEE 258
Score = 27.4 bits (61), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 165 GWGKLEEEEEEEEEEEEEEEE 185
G G+ EEE + E E E+ EE
Sbjct: 238 GKGRRREEENDAEAESEKTEE 258
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 27.6 bits (61), Expect = 5.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEK 205
EE++EEE + + +EE++ ++ EK
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 27.6 bits (61), Expect = 5.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 176 EEEEEEEEEEEEEEEEEEEEEEEEK 200
EE++EEE + + +EE++ + EK
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
>gnl|CDD|237292 PRK13182, racA, polar chromosome segregation protein; Reviewed.
Length = 175
Score = 26.9 bits (60), Expect = 5.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E EE E ++ E ++ E + E E EKK KRRK
Sbjct: 126 EMEEMLERLQKLEARLKKLEPIYITPDTEPTYEREKKPKRRK 167
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 27.3 bits (61), Expect = 5.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
K E E+E E EE+ EE +++ E + +EE + E ++
Sbjct: 51 KKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQR 90
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 27.7 bits (61), Expect = 5.5
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE + EE+ E+ E EE++ ++EE + ++
Sbjct: 466 EETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQK 504
Score = 27.7 bits (61), Expect = 5.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE + EE+ E+ E EE+++ +EE + +K
Sbjct: 466 EETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQK 504
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 27.2 bits (61), Expect = 5.5
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEE-EEEEEEEEEEKEEEEKK 206
+L+ + ++E+ E +E E + +E E E + +
Sbjct: 71 ELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 26.4 bits (58), Expect = 5.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 164 HGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
+ L+EE E E ++EE+ EE +EE E + E
Sbjct: 55 QKYEDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
Score = 26.0 bits (57), Expect = 7.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKE 201
GK ++ E+ +EE E E ++EE+ EE +EE
Sbjct: 52 GKGQKYEDLQEEGEGENDDEEDSNSEESNNDEENG 86
Score = 25.7 bits (56), Expect = 8.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
K E+ +EE E E ++EE+ EE +EE E + +
Sbjct: 56 KYEDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 27.4 bits (60), Expect = 5.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEE 196
W K ++E +EE + E E EEE +EE + +E
Sbjct: 9 WKKFKDEHKEEHKVENEILEEETDEESQHQE 39
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 27.5 bits (62), Expect = 5.6
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 155 VGHLSRSLCHGWGKLEE-----EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+G+L+R GW K+E+ + + E+ EE+ + E ++EE EE+ + ++ KKR
Sbjct: 108 LGNLAR---KGWAKIEKGKVILKPDAYEDPEEKALKALAEGDKEELSEEDLKVLKELKKR 164
Query: 210 R 210
+
Sbjct: 165 K 165
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 27.6 bits (62), Expect = 5.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K+ + EE ++ EEE E+ E+E +E EEE E E + K+ +
Sbjct: 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI 123
Score = 27.2 bits (61), Expect = 7.1
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
+L ++ EEE E+ E+E +E EEE E E E ++ E+E +
Sbjct: 83 SLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124
Score = 27.2 bits (61), Expect = 8.1
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
++ EE ++ EEE E+ E+E +E EEE E E E K+ ++ ++
Sbjct: 80 SVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 27.5 bits (62), Expect = 5.7
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 149 IAKEMHVGHLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
E ++ ++R L K E + EE + ++ EEEE EEEEEEE E K
Sbjct: 473 KTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYT 532
Query: 209 R 209
Sbjct: 533 E 533
Score = 26.8 bits (60), Expect = 9.5
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEE 195
KLEEEE EEEEEEE E + E++
Sbjct: 508 KLEEEEVEEEEEEEAVVVESAKNYTEKD 535
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 27.5 bits (61), Expect = 5.8
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E + ++E ++ E E E +E + + RR
Sbjct: 341 NEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAV 383
Score = 27.5 bits (61), Expect = 5.8
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ E + ++E ++ E E E ++E R + +
Sbjct: 338 AEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARR 380
Score = 27.1 bits (60), Expect = 8.0
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 160 RSLCHGWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
R + W E E E ++ E+ E + ++E +++ E++ R
Sbjct: 314 RMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREAR 366
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 27.3 bits (61), Expect = 5.8
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E+ E+E EE E E +E +EE EK K K
Sbjct: 133 GEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKN 178
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 27.5 bits (62), Expect = 5.9
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 170 EEEEEEEEEEE---------------EEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+EEEEE +++ +EE+EE EEE E E E E
Sbjct: 263 KEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALALPP 316
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 27.4 bits (61), Expect = 5.9
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
E ++ + E E + EEE E
Sbjct: 135 AFELAALVREARVKKLDALELAEADTPEEEVAEVLA 170
>gnl|CDD|151773 pfam11332, DUF3134, Protein of unknown function (DUF3134). This
family of proteins with unknown function appears to be
restricted to Cyanobacteria.
Length = 72
Score = 25.8 bits (57), Expect = 5.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
G+L E +E E EEEEE E ++++ +++
Sbjct: 32 GRLIAREPQESPEVSTEEEEEISELIGDDDDYYDDDD 68
>gnl|CDD|234235 TIGR03503, TIGR03503, TIGR03503 family protein. This set of
conserved hypothetical protein has a phylogenetic range
that closely matches that of TIGR03501, a putative
C-terminal protein targeting signal.
Length = 374
Score = 27.3 bits (61), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE E E EE EE + + E+E+ E++ K K I
Sbjct: 308 EEPPEAEPSAEEAATEEALKAKAEQEQALLVEREAKDSKFWI 349
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR) class
of eukaryotic retrotransposons. The central region of
ATHILA retrotransposons contains two or three open
reading frames (ORFs). This family represents the ORF1
product. The function of ORF1 is unknown.
Length = 456
Score = 27.3 bits (60), Expect = 6.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
L ++ E EE EE+ +EE+E++E E E+ +
Sbjct: 363 LGATDDIEHTEEATEEDVDEEDEDDEAELEKFDTSM 398
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 26.9 bits (60), Expect = 6.2
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ + E+ + ++++ +E +++E+ ++ E EE K EE K KK+
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPI 57
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 27.1 bits (60), Expect = 6.3
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
W +EE+ E + + ++EEE +E++EEE +E+E+
Sbjct: 191 DWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDED 230
>gnl|CDD|237672 PRK14318, glmM, phosphoglucosamine mutase; Provisional.
Length = 448
Score = 27.2 bits (61), Expect = 6.4
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 2 NVPVSDRMSVRDYLSDVFTHAVQVAFPELGDK 33
NVPV D+ + + AV A ELGD
Sbjct: 377 NVPVVDKTTAAT--APSVRAAVARAEAELGDT 406
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 27.0 bits (60), Expect = 6.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ EEEE E+ E +EEE E +E +E EE E ++ +
Sbjct: 35 AVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQL 78
Score = 27.0 bits (60), Expect = 6.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 165 GWGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEE 202
LEEEE E+ E +EEE E +E +E EE E
Sbjct: 33 EKAVLEEEELEQALEAKEEELESAAQELQEGIEEGARE 70
>gnl|CDD|149048 pfam07768, PVL_ORF50, PVL ORF-50-like family. This is a family of
sequences found in both bacteria and bacteriophages.
This region is approximately 130 residues long and in
some cases is found as part of the PVL (Panton-Valentine
leukocidin) group of genes, which encode a member of the
leukocidin group of bacterial toxins that kill
leukocytes by creation of pores in the cell membrane.
PVL appears to be a virulence factor associated with a
number of human diseases.
Length = 118
Score = 26.3 bits (58), Expect = 6.5
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 156 GHLSRSLCHGWGKLEEEE-------EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
G + + + GW E + +E E ++ E E+E +E E E + KE E ++KK
Sbjct: 27 GIVRKRVKGGWELSEALDAPYGMRLKEYREIKKSENIEQERKERELERKRRKEAELRRKK 86
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 27.5 bits (62), Expect = 6.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 163 CHGWGKLEEEEEEEEEEEEEEEEEEEEEE 191
GW +E E E + E+E E+ + +
Sbjct: 13 GSGWFLVEAEAECSDGEDELEDLFDTGSD 41
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 26.4 bits (58), Expect = 6.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
++EE EE+E+ E+ E ++E E E + +E++ K K
Sbjct: 50 MQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEP 94
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 27.4 bits (61), Expect = 6.8
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 166 WGKLEEEEEEEEE--EEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
+ + +E+ +E +E EE + E E +EE EE EE+ EE E++ K
Sbjct: 55 YQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLK 99
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 27.4 bits (61), Expect = 6.9
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
E+ + + E + + E EEE+E EE
Sbjct: 78 SSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPD 118
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 27.1 bits (61), Expect = 6.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E EE E EE+ + E + + E E E+ E++ +R K+++
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSEL 45
Score = 27.1 bits (61), Expect = 7.5
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+LE EE E EE+ + E + + E E E+ E E ++ K K
Sbjct: 2 RLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 26.3 bits (58), Expect = 7.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 185 EEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
E ++EEE+ EE+ E+ +EE K R K K
Sbjct: 1 EGKKEEEDSEEDFEKLKEEMAKYDRFKGK 29
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 27.3 bits (61), Expect = 7.0
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
EE +E +E EE EE+ E E EEE +EE KK + I
Sbjct: 48 QLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSI 93
Score = 26.9 bits (60), Expect = 8.2
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKK 207
+L EE +E +E EE EE+ E E EEE KEE KK
Sbjct: 48 QLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKT 87
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 27.4 bits (60), Expect = 7.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
++E E EE E E E E E E E E E+E E+ + R
Sbjct: 459 RIERLEREERERLERERMERIERERLERERLERERLERDRLERD 502
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 26.4 bits (59), Expect = 7.2
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 21/65 (32%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEE---------------------EEEEEEEKEEEEKKK 207
+E+ ++ EEE +EE + E +E+ EE + KE+++KKK
Sbjct: 27 MEKYDKREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKK 86
Query: 208 KRRKN 212
K +N
Sbjct: 87 KELEN 91
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 27.0 bits (60), Expect = 7.2
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEE 204
E ++ EE +E +E E EE ++ E E+
Sbjct: 155 RESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQ 189
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 27.1 bits (60), Expect = 7.2
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
G E + E EE++E E ++ E +K + +K + ++ N
Sbjct: 201 GHDXEVTYYDGCESEEDDEGWYIEPQDATPEGKKGKNKKGRGKKHN 246
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 26.0 bits (58), Expect = 7.3
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
LEE + EE +++ +E+++ +EE+EE + + E +K+ R+
Sbjct: 3 LEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQKQAILRQ 45
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 27.3 bits (61), Expect = 7.3
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
KLE E + EE + E+ E EE + EE+ E ++
Sbjct: 89 KLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELE 130
>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction
only].
Length = 346
Score = 27.3 bits (61), Expect = 7.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 172 EEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+EE+ EE E EE EE + + ++ +++ RK
Sbjct: 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRK 333
Score = 27.3 bits (61), Expect = 7.5
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
K++ +EE+ EE E EE EE + + +K ++ +
Sbjct: 289 KIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 27.3 bits (61), Expect = 7.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEE---------EEEKEEEEKKKKR 209
KL+E E E++EEE E+ ++ E+ E+ E K EEE++K+
Sbjct: 91 RKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQM 142
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 27.4 bits (62), Expect = 7.6
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEE 189
L +E+EEE+EE+EE EEE +
Sbjct: 475 DLGKEDEEEKEEKEEAEEEFKP 496
>gnl|CDD|221445 pfam12157, DUF3591, Protein of unknown function (DUF3591). This
domain is found in eukaryotes and is typically between
445 to 462 amino acids in length. Most members are
annotated as being transcription initiation factor TFIID
subunit 1, and this region is the conserved central
portion of these proteins.
Length = 457
Score = 27.3 bits (61), Expect = 7.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 153 MHVG--HLSRSLCHGWGKLEEEEEEEEEEEEEEEEEEE 188
M VG HL + G+ E + +E+E EE+ + EE+
Sbjct: 325 MQVGQQHLEDA---GYNNTIESKRDEDEGEEKIDLEEK 359
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 26.9 bits (60), Expect = 7.7
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 169 LEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
L EE E+ E+E E+ +E E E+ E E + EEE + R +
Sbjct: 115 LMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE 157
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 27.1 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 166 WGKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 199
W +LE+E + +E E + + +EEE +E EEE
Sbjct: 500 WYELEKELQRQETEVDAQAQEEEAAAAKEITEEE 533
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 26.9 bits (60), Expect = 7.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKK 206
E+E EE + E E ++ E E EEE K
Sbjct: 228 EDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELK 264
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 170 EEEEEEEEEEEEEEEE 185
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 171 EEEEEEEEEEEEEEEE 186
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 172 EEEEEEEEEEEEEEEE 187
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 173 EEEEEEEEEEEEEEEE 188
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 174 EEEEEEEEEEEEEEEE 189
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 175 EEEEEEEEEEEEEEEE 190
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 176 EEEEEEEEEEEEEEEE 191
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 177 EEEEEEEEEEEEEEEE 192
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 178 EEEEEEEEEEEEEEEE 193
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 179 EEEEEEEEEEEEEEEE 194
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 180 EEEEEEEEEEEEEEEE 195
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 181 EEEEEEEEEEEEEEEE 196
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 182 EEEEEEEEEEEEEEEE 197
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 183 EEEEEEEEEEEEEEEE 198
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.2 bits (58), Expect = 7.9
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 184 EEEEEEEEEEEEEEEE 199
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 27.2 bits (61), Expect = 7.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 175 EEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E EE E EE EE+ EE E+ EE +K +R +++
Sbjct: 88 AETLEERREIREEAEEKWEEALEKGDLEEARKYAQRSSRL 127
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 25.8 bits (57), Expect = 7.9
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEE 203
+E EE+++E+E E+++E +E++ E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 26.9 bits (60), Expect = 8.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 186 EEEEEEEEEEEEEEKEEEEKKKKRRKN 212
E E EE +E EEE +E++ + ++ + N
Sbjct: 46 EREAEEAKEREEENREKQRRIERLKSN 72
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function prediction
only].
Length = 128
Score = 26.3 bits (58), Expect = 8.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
LE EE E+EE+ +E +EEE E EE++E+ + K
Sbjct: 16 YLELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIK 61
>gnl|CDD|218274 pfam04801, Sin_N, Sin-like protein conserved region. Family of
higher eukaryotic proteins. SIN was identified as a
protein that interacts specifically with SXL (sex
lethal) in a yeast two-hybrid assay. The interaction is
mediated by one of the SXL RNA binding domains.
Length = 422
Score = 27.0 bits (60), Expect = 8.2
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 173 EEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKN 212
EE+ +E+E+ +EE EEE ++ + + E EK++KRR+
Sbjct: 148 EEDTADEDEDPDEEAEEELKQVTVKFSRPETEKQRKRREQ 187
>gnl|CDD|192074 pfam08573, SAE2, DNA repair protein endonuclease SAE2/CtIP
C-terminus. SAE2 is a protein involved in repairing
meiotic and mitotic double-strand breaks in DNA. It has
been shown to negatively regulate DNA damage checkpoint
signalling. SAE2 is homologous to the CtIP proteins in
mammals and an homologous protein in plants. Crucial
sequence motifs that are highly conserved are the CxxC
and the RHR motifs in this C-terminal part of the
protein. It is now known to be an endonuclease. In
budding yeast, genetic evidence suggests that the SAE2
protein is essential for the processing of hairpin DNA
intermediates and meiotic double-strand breaks by
Mre11/Rad50 complexes. SAE2 binds DNA and exhibits
endonuclease activity on single-stranded DNA
independently of Mre11/Rad50 complexes, but hairpin DNA
structures are cleaved cooperatively in the presence of
Mre11/Rad50 or Mre11/Rad50/Xrs2. Hairpin structures are
not processed at the tip by SAE2 but rather at
single-stranded DNA regions adjacent to the hairpin. The
catalytic activities of SAE2 are important for its
biological functions.
Length = 93
Score = 25.9 bits (57), Expect = 8.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEKKKK 208
EE+ + EE EE +E KKKK
Sbjct: 35 RLEEKNGNFHNLPTMKAEEREELLKEAKKKK 65
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 26.5 bits (59), Expect = 8.3
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 177 EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
E+E +E+EE+ + E + K++K
Sbjct: 121 SSEDENDEDEEDNADRAGIESGIDDSAPPSPKKQK 155
Score = 26.2 bits (58), Expect = 9.6
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 174 EEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
E+E +E+EE+ + E ++ KK+K
Sbjct: 121 SSEDENDEDEEDNADRAGIESGIDDSAPPSPKKQKL 156
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 27.0 bits (60), Expect = 8.4
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 167 GKLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
G ++ ++ +++ ++++ E E +E E ++ ++KKKK++K K
Sbjct: 21 GTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67
>gnl|CDD|233048 TIGR00605, rad4, DNA repair protein rad4. All proteins in this
family for which functions are known are involved in
targeting nucleotide excision repair to specific regions
of the genome.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 713
Score = 27.2 bits (60), Expect = 8.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 178 EEEEEEEEEEEEEEEEEEEEEEKEEEEK 205
EE E E EE E+ +EE+E+E+ K
Sbjct: 661 EEFREAIETAWEEIEQIQEEKEQEKHRK 688
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 26.8 bits (59), Expect = 8.5
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
EE + ++ E+E ++ E+E + +E++K+ EE +K+
Sbjct: 88 VAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQA 127
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 27.2 bits (60), Expect = 8.6
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 160 RSLCHGWGKLEEEEEEE-----EEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
+SL LE+E E+E E + E EE+ E E+EE +K +EE++K +++ +I
Sbjct: 674 KSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKEI 733
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 27.0 bits (60), Expect = 8.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+E+++E+++E+E+ + EE EE ++ + E K+ N
Sbjct: 486 DDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNA 531
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 27.0 bits (60), Expect = 8.7
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 181 EEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
EE+E+E + E E K K +K+K
Sbjct: 120 EEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSK 152
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 26.9 bits (60), Expect = 8.8
Identities = 12/40 (30%), Positives = 27/40 (67%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKR 209
+ + + + + E + E+ + E +E+++EK++EEKKKK+
Sbjct: 305 MISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ 344
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 26.7 bits (59), Expect = 8.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 168 KLEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
+ E E+E +EE+E E+ E+ E E + E+ E + R +
Sbjct: 27 DVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQ 70
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 26.5 bits (59), Expect = 9.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 184 EEEEEEEEEEEEEEEEKEEEEKKKKRRK 211
EEE E + EEE K++++KKKK+ K
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTK 193
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 26.0 bits (58), Expect = 9.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 171 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEE 203
+EE E E EEE EE+ + + E+E E E
Sbjct: 87 DEEIELELNLTEEELEEKYKGKLEKEYEGPLYE 119
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 26.2 bits (58), Expect = 9.5
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Query: 166 WGKLEEEEEEEEEEEE------------EEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNK 213
+ +EE E EEE E E + +E E++ ++ K +K++K K+
Sbjct: 67 RERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDP 126
Query: 214 I 214
Sbjct: 127 R 127
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 26.9 bits (60), Expect = 9.7
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 170 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKKKKRRKNKI 214
E E + EE ++E ++ EE+ E+ E E E+++EE EK K + +K
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKA 136
>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
Length = 654
Score = 26.9 bits (60), Expect = 9.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 22 AVQVAFPELGDKTASVASTNEKYVHKFGDFQ 52
A+ P L +A +AS+N + FGDFQ
Sbjct: 356 ALAKVLPGLIGGSADLASSNMTLLKDFGDFQ 386
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 25.6 bits (56), Expect = 10.0
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 168 KLEEEEEEEEEEEEEEEEE 186
K E ++EE++EEEEEEE++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.128 0.347
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,332,474
Number of extensions: 1148692
Number of successful extensions: 36577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20234
Number of HSP's successfully gapped: 5497
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (25.6 bits)