BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6951
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 7/65 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
DF SLD++N+ NN+LAF AE+ LGI ++ +E M PD+LS++ YL+Q
Sbjct: 56 DFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKE-------MASVGEPDKLSMVMYLTQ 108
Query: 65 FYQVF 69
FY++F
Sbjct: 109 FYEMF 113
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
+F SL++ + NN+LAF AER GIP + +E M PD+LS++ YLS+
Sbjct: 56 NFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKE-------MASAQEPDKLSMVMYLSK 108
Query: 65 FYQVF 69
FY++F
Sbjct: 109 FYELF 113
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ L + + +N AF AE++L IP +LDA ED+V A PD +I+TY+S
Sbjct: 167 DYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDA-------EDIVGTARPDEKAIMTYVSS 219
Query: 65 FYQVF 69
FY F
Sbjct: 220 FYHAF 224
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+A L + + N AF AE++L IP +LDA ED+V PD +I+TY+S
Sbjct: 187 DYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDA-------EDIVNTPKPDEKAIMTYVSC 239
Query: 65 FYQVF 69
FY F
Sbjct: 240 FYHAF 244
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+A L + + N AF AE++L IP +LDA ED+V PD +I+TY+S
Sbjct: 183 DYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDA-------EDIVNTPKPDEKAIMTYVSC 235
Query: 65 FYQVF 69
FY F
Sbjct: 236 FYHAF 240
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ L + + +N AF AE++L IP +LDA ED+V A PD +I+TY+S
Sbjct: 168 DYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDA-------EDIVGTARPDEKAIMTYVSS 220
Query: 65 FYQVF 69
FY F
Sbjct: 221 FYHAF 225
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ L +N N E+AF +AE H P L LD EDMV PD + TY+ +
Sbjct: 54 DYGQLSPQNRRQNFEVAFSSAETHADCPQL-------LDTEDMVRLREPDWKCVYTYIQE 106
Query: 65 FYQVFVNQ 72
FY+ V +
Sbjct: 107 FYRCLVQK 114
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
++ L + + +N AF AE++L IP +LDA ED+V A PD +I+TY+S
Sbjct: 172 EYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDA-------EDIVNTARPDEEAIMTYVSS 224
Query: 65 FYQVF 69
FY F
Sbjct: 225 FYHAF 229
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At
1.1 Angstrom Resolution
Length = 109
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
DF L + N + N + AF AE+HLG+ LLD + +D PD SI+TY+
Sbjct: 50 DFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDH--------PDEKSIITYVVT 101
Query: 65 FYQVF 69
+Y F
Sbjct: 102 YYHYF 106
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
DF L + N + N + AF AE+HLG+ LLD + +D PD SI+TY+
Sbjct: 49 DFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDH--------PDEKSIITYVVT 100
Query: 65 FYQVF 69
+Y F
Sbjct: 101 YYHYF 105
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
DF SL + N + N + AF AE+ LG+ LLD + +D PD SI+TY++
Sbjct: 54 DFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDVNVDQ--------PDEKSIITYVAT 105
Query: 65 FYQVF 69
+Y F
Sbjct: 106 YYHYF 110
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+A LD N LAF TAE+ L D + +L+ +DMV AVPD + TY+ +
Sbjct: 51 DYAELDPAKRRHNFTLAFSTAEK------LADCAQ-LLEVDDMVRLAVPDSKCVYTYIQE 103
Query: 65 FYQVFVNQ 72
Y+ V +
Sbjct: 104 LYRSLVQK 111
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ SL+ ++I NN+ A+ G ++ +R +L+ DMV A+PD+L+++TYL Q
Sbjct: 56 DYKSLNPQDIKENNKKAYD------GFASIGISR--LLEPSDMVLLAIPDKLTVMTYLYQ 107
Query: 65 FYQVF 69
F
Sbjct: 108 IRAHF 112
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 9 LDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQV 68
+ Q++ E AF A LGI E +LD ED V+ PD+ SIL Y++ +QV
Sbjct: 187 VSQQSATQRLEHAFNIARYQLGI-------EKLLDPED-VDTTYPDKKSILMYITSLFQV 238
Query: 69 FVNQ 72
Q
Sbjct: 239 LPQQ 242
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 19 ELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 72
E AF A+ +LGI E +LD ED V +PD+ SI+ YL+ ++V Q
Sbjct: 69 EHAFSKAQTYLGI-------EKLLDPED-VAVRLPDKKSIIMYLTSLFEVLPQQ 114
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 19 ELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVF 69
E AF A+ +LGI E +LD ED V +PD+ SI+ YL+ ++V
Sbjct: 182 EHAFSKAQTYLGI-------EKLLDPED-VAVRLPDKKSIIXYLTSLFEVL 224
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 9 LDQRNIYSNNEL-----AFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
+D +Y L AF AER LG+ LLD + V+ PD SI+TY+S
Sbjct: 235 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED--------VDVPQPDEKSIITYVS 286
Query: 64 QFY 66
Y
Sbjct: 287 SLY 289
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 9 LDQRNIYSNNEL-----AFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
+D +Y L AF AER LG+ LLD + V+ PD SI+TY+S
Sbjct: 182 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED--------VDVPQPDEKSIITYVS 233
Query: 64 QFY 66
Y
Sbjct: 234 SLY 236
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
Query: 9 LDQRNIYSNNEL-----AFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
+D +Y L AF AER LG+ LLD + V+ PD SI+TY+S
Sbjct: 179 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED--------VDVPQPDEKSIITYVS 230
Query: 64 QFY 66
Y
Sbjct: 231 SLY 233
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 32.7 bits (73), Expect = 0.051, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ S D +N A + A+ LGIP V+ E++V+ V D+ S++TYLSQ
Sbjct: 215 DWDSWDASKPVTNAREAMQQADDWLGIP-------QVITPEEIVDPNV-DKHSVMTYLSQ 266
Query: 65 F 65
F
Sbjct: 267 F 267
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 32.0 bits (71), Expect = 0.092, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ S D +N A + A+ LGIP V+ E++V+ V D S++TYLSQ
Sbjct: 212 DWDSWDASKPVTNAREAMQQADDWLGIP-------QVITPEEIVDPNV-DEHSVMTYLSQ 263
Query: 65 F 65
F
Sbjct: 264 F 264
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 32.0 bits (71), Expect = 0.10, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ S D +N A + A+ LGIP V+ E++V+ V D S++TYLSQ
Sbjct: 215 DWDSWDASKPVTNAREAMQQADDWLGIP-------QVITPEEIVDPNV-DEHSVMTYLSQ 266
Query: 65 F 65
F
Sbjct: 267 F 267
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ S D + N A + A+ LG+P V+ E+++ V D S++TYLSQ
Sbjct: 185 DWESWDPQKPVDNAREAMQQADDWLGVP-------QVITPEEIIHPDV-DEHSVMTYLSQ 236
Query: 65 F 65
F
Sbjct: 237 F 237
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ S D + N A + A+ LG+P V+ E+++ V D S++TYLSQ
Sbjct: 188 DWESWDPQKPVDNAREAMQQADDWLGVP-------QVITPEEIIHPDV-DEHSVMTYLSQ 239
Query: 65 F 65
F
Sbjct: 240 F 240
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 29.6 bits (65), Expect = 0.39, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ S D + N A + A+ LG+P V+ E+++ V D S++TYLSQ
Sbjct: 188 DWESWDPQKPVDNAREAMQQADDWLGVP-------QVITPEEIIHPDV-DEHSVMTYLSQ 239
Query: 65 F 65
F
Sbjct: 240 F 240
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 29.6 bits (65), Expect = 0.43, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ S D + N A + A+ LG+P V+ E+++ V D S++TYLSQ
Sbjct: 188 DWESWDPQKPVDNAREAVQQADDWLGVP-------QVITPEEIIHPDV-DEHSVMTYLSQ 239
Query: 65 F 65
F
Sbjct: 240 F 240
>pdb|4IK0|A Chain A, Crystal Structure Of Diaminopimelate Epimerase Y268a
Mutant From Escherichia Coli
pdb|4IK0|B Chain B, Crystal Structure Of Diaminopimelate Epimerase Y268a
Mutant From Escherichia Coli
Length = 280
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 4 DDFASLD--QRNIYSNNELAFRTAERHLGI 31
+DF +D +N++ + EL R A+RHLG+
Sbjct: 11 NDFMVVDAVTQNVFFSPELIRRLADRHLGV 40
>pdb|4IJZ|A Chain A, Crystal Structure Of Diaminopimelate Epimerase From
Escherichia Coli
pdb|4IJZ|B Chain B, Crystal Structure Of Diaminopimelate Epimerase From
Escherichia Coli
Length = 280
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 4 DDFASLD--QRNIYSNNELAFRTAERHLGI 31
+DF +D +N++ + EL R A+RHLG+
Sbjct: 11 NDFMVVDAVTQNVFFSPELIRRLADRHLGV 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,866,197
Number of Sequences: 62578
Number of extensions: 55738
Number of successful extensions: 172
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 28
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)