Query psy6951
Match_columns 72
No_of_seqs 129 out of 577
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 22:54:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.7 5.6E-18 1.2E-22 145.8 4.7 61 3-71 212-272 (2473)
2 KOG0035|consensus 99.3 2.9E-13 6.4E-18 111.5 2.3 63 3-72 187-250 (890)
3 COG5069 SAC6 Ca2+-binding acti 98.9 1.1E-09 2.4E-14 86.9 4.5 60 4-70 172-233 (612)
4 PF00307 CH: Calponin homology 98.6 7.4E-08 1.6E-12 58.8 4.7 58 4-70 46-108 (108)
5 cd00014 CH Calponin homology d 98.2 1.8E-06 3.8E-11 52.7 3.4 52 9-70 55-107 (107)
6 smart00033 CH Calponin homolog 97.0 0.00053 1.2E-08 41.1 2.1 45 12-64 58-102 (103)
7 KOG0046|consensus 65.6 4.2 9.1E-05 33.6 1.8 45 10-65 567-611 (627)
8 PF09268 Clathrin-link: Clathr 62.7 4.9 0.00011 19.9 1.1 15 13-27 10-24 (24)
9 PF11971 CAMSAP_CH: CAMSAP CH 56.6 8.3 0.00018 23.8 1.6 36 7-49 47-83 (85)
10 KOG0035|consensus 54.6 4.4 9.6E-05 34.8 0.2 58 3-71 465-522 (890)
11 COG2308 Uncharacterized conser 39.8 20 0.00043 29.0 1.8 50 20-71 288-339 (488)
12 PF01187 MIF: Macrophage migra 35.5 29 0.00063 21.7 1.7 28 6-33 61-91 (114)
13 PTZ00450 macrophage migration 34.1 30 0.00065 22.2 1.6 28 6-33 63-93 (113)
14 PF13263 PHP_C: PHP-associated 33.2 27 0.00059 19.4 1.2 20 16-36 2-21 (56)
15 cd08051 gp6_gp15_like Head-Tai 28.0 1.5E+02 0.0032 18.3 4.0 56 2-67 7-62 (94)
16 PF14804 Jag_N: Jag N-terminus 27.9 53 0.0012 18.5 1.8 18 16-33 5-22 (52)
17 KOG0518|consensus 25.7 6.1 0.00013 34.7 -3.4 52 5-64 191-246 (1113)
18 PF02026 RyR: RyR domain; Int 24.4 49 0.0011 20.6 1.3 24 2-25 57-80 (94)
19 PF08100 Dimerisation: Dimeris 23.3 89 0.0019 17.5 2.2 28 21-49 2-30 (51)
20 PF13046 DUF3906: Protein of u 23.3 61 0.0013 19.5 1.5 16 15-30 21-36 (64)
21 COG4545 Glutaredoxin-related p 22.1 44 0.00095 21.1 0.8 33 4-36 27-70 (85)
22 PTZ00397 macrophage migration 21.8 67 0.0014 20.0 1.6 27 7-33 64-93 (116)
No 1
>KOG0517|consensus
Probab=99.71 E-value=5.6e-18 Score=145.75 Aligned_cols=61 Identities=41% Similarity=0.641 Sum_probs=59.2
Q ss_pred CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951 3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN 71 (72)
Q Consensus 3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~ 71 (72)
++||++|.+.|+..|++.||++||++|||++||| |||+ +...||++||||||+.||+||++
T Consensus 212 LvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLD-------pEDV-~v~~PDEKSIITYV~~YYHyFsK 272 (2473)
T KOG0517|consen 212 LVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLD-------PEDV-NVEQPDEKSIITYVVTYYHYFSK 272 (2473)
T ss_pred hhhhcccCCCchhhHHHHHHHHHHHHcCchhcCC-------Hhhc-CccCCCcchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999 9999 78999999999999999999986
No 2
>KOG0035|consensus
Probab=99.35 E-value=2.9e-13 Score=111.46 Aligned_cols=63 Identities=46% Similarity=0.759 Sum_probs=60.3
Q ss_pred CCC-ccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhcC
Q psy6951 3 KDD-FASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 72 (72)
Q Consensus 3 ~id-~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~~ 72 (72)
+|| |+++++.++.+|++.||++||+++|||++|| +||++..+.||+++||||++++|+.|+++
T Consensus 187 li~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld-------~ed~~~~~~pde~aimtyv~~~~~~fSg~ 250 (890)
T KOG0035|consen 187 LIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLD-------AEDIVEAAIPDEKAIMTYVSSYYHAFSGA 250 (890)
T ss_pred hhhhhhhcCccchhHHhhhhhhhhhhcCCcccccC-------ccccccCCCCchhhhhhhhhhccccccCc
Confidence 577 9999999999999999999999999999999 99999999999999999999999999863
No 3
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=98.92 E-value=1.1e-09 Score=86.88 Aligned_cols=60 Identities=38% Similarity=0.533 Sum_probs=55.6
Q ss_pred CCccCCC--ccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951 4 DDFASLD--QRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV 70 (72)
Q Consensus 4 id~~sl~--~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~ 70 (72)
+|+..|+ ..|+.-|+.+||++|++.+||+++++ .||+++...||++|+||||+..|..|.
T Consensus 172 ld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~-------vedivnV~~pDERsimtyv~~y~~rf~ 233 (612)
T COG5069 172 LDPNVLDLQKKNKALNNFQAFENANKVIGIARLIG-------VEDIVNVSIPDERSIMTYVSWYIIRFG 233 (612)
T ss_pred cCccccchhhcccchhHHHHHHHHHHhhchHhhcC-------cceeeecCCcchHHHHHHHHHHHHHHh
Confidence 5777787 78999999999999999999999999 999999999999999999999888774
No 4
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.62 E-value=7.4e-08 Score=58.77 Aligned_cols=58 Identities=40% Similarity=0.626 Sum_probs=48.4
Q ss_pred CCccCCCc-----cCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951 4 DDFASLDQ-----RNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV 70 (72)
Q Consensus 4 id~~sl~~-----~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~ 70 (72)
+++..+.+ ....+|++.|++.+++++|+|..++ ++|++. .+|+++|++|+.+++++|.
T Consensus 46 i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~~-------~~dl~~--~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 46 IDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLLS-------PEDLVE--KGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp SSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS--------HHHHHS--TT-HHHHHHHHHHHHHHHT
T ss_pred chhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCCC-------HHHHHH--CcCHHHHHHHHHHHHHHHC
Confidence 45666643 3689999999999998899999999 999974 8999999999999999884
No 5
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=98.20 E-value=1.8e-06 Score=52.68 Aligned_cols=52 Identities=37% Similarity=0.527 Sum_probs=45.7
Q ss_pred CCccCHHhhHHHHHHHHHHhcCCchh-hhhhhccCCcccccccCCCCchhHHHHHHHHHHhhh
Q psy6951 9 LDQRNIYSNNELAFRTAERHLGIPAL-LDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFV 70 (72)
Q Consensus 9 l~~~~~~~N~~lAf~~Ae~~lGIp~l-Ld~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~ 70 (72)
.......+|.+.+++.+++ +|||.. ++ ++|+++ .+|+++|++|+++++.+|.
T Consensus 55 ~~~~~~~~Ni~~~l~~~~~-~gi~~~~~~-------~~Dl~~--~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 55 LSRFKRLENINLALNFAEK-LGVPVVNFD-------AEDLVE--DGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred cchhhHHHHHHHHHHHHHH-cCCceeccC-------HHHHhh--CCCceeeHHHHHHHHHhhC
Confidence 4556678999999999985 999998 88 999974 7999999999999998873
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=96.97 E-value=0.00053 Score=41.11 Aligned_cols=45 Identities=29% Similarity=0.216 Sum_probs=37.0
Q ss_pred cCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHH
Q psy6951 12 RNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64 (72)
Q Consensus 12 ~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~ 64 (72)
....+|++.+++.+++...++.+++ |+|+++.. ++.++++.|+.+
T Consensus 58 ~~~~~Ni~~~l~~~~~~g~~~~~~~-------~~Dl~~~~-k~~~~v~~~l~~ 102 (103)
T smart00033 58 FKKIENINLALSFAEKLGGKLVLFE-------PEDLVEGN-KLILGVIWTLIL 102 (103)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeccC-------HHHHhhcc-hHHHHHHHHHHh
Confidence 4568999999999997733478999 99998744 899999999875
No 7
>KOG0046|consensus
Probab=65.63 E-value=4.2 Score=33.58 Aligned_cols=45 Identities=27% Similarity=0.340 Sum_probs=36.9
Q ss_pred CccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHH
Q psy6951 10 DQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQF 65 (72)
Q Consensus 10 ~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~ 65 (72)
+.+++..|.+.|.++| |.+|-.-.+- |||+++ ..++-|||..+.+
T Consensus 567 t~EdK~~NAkYaIS~A-RKiGa~IyaL-------PEDIvE---V~pKMvltvfA~l 611 (627)
T KOG0046|consen 567 TDEEKLLNAKYAISVA-RKLGASIYAL-------PEDIVE---VNPKMVLTVFASL 611 (627)
T ss_pred ChhhhhhcchhhHhHH-HhhCceEEec-------cHHHhh---hchhhhHHHHHHH
Confidence 4567889999999999 5799999888 999986 4557888877765
No 8
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=62.72 E-value=4.9 Score=19.95 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=10.4
Q ss_pred CHHhhHHHHHHHHHH
Q psy6951 13 NIYSNNELAFRTAER 27 (72)
Q Consensus 13 ~~~~N~~lAf~~Ae~ 27 (72)
+...|.++|+++|-|
T Consensus 10 ~~L~N~~LAl~lA~R 24 (24)
T PF09268_consen 10 NTLQNPDLALRLASR 24 (24)
T ss_dssp HTT--HHHHHHHHHH
T ss_pred hccCCHHHHHHHhcC
Confidence 457899999999864
No 9
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=56.56 E-value=8.3 Score=23.83 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=27.6
Q ss_pred cCCCccCHHhhHHHHHHHHHHhcCCch-hhhhhhccCCcccccc
Q psy6951 7 ASLDQRNIYSNNELAFRTAERHLGIPA-LLDARESVLDAEDMVE 49 (72)
Q Consensus 7 ~sl~~~~~~~N~~lAf~~Ae~~lGIp~-lLd~~~~~~~~ed~~~ 49 (72)
...+..+...|+.+..+.++++||... -++ +|||..
T Consensus 47 ~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~-------~edl~~ 83 (85)
T PF11971_consen 47 TTMSQADSLYNLQLLNSFCQSHLGFSCCHLE-------PEDLLY 83 (85)
T ss_pred cchHHHHhhhhHHHHHHHHHHHcCCCcCcCC-------HHHHhc
Confidence 344566778999999999999997743 347 999853
No 10
>KOG0035|consensus
Probab=54.61 E-value=4.4 Score=34.83 Aligned_cols=58 Identities=19% Similarity=-0.044 Sum_probs=45.0
Q ss_pred CCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951 3 KDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN 71 (72)
Q Consensus 3 ~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~ 71 (72)
+++.+.+...+...|+..+|+.+. | +++.. |-+|.....||++.+|+|..+...++.+
T Consensus 465 ~~~~~~~~a~~~q~i~dq~~~~~~--l--s~~r~-------pal~~~~~~~dk~~~~~le~a~Raa~~~ 522 (890)
T KOG0035|consen 465 LYDDAKLVAADCQHICDQWDDLGQ--L--SRKRR-------PALMQMEKVLDKLAVLTLEFAKRAAPFN 522 (890)
T ss_pred hhhhhhhhhhhhhhccccccccch--h--hhhhc-------hhhhhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 356677788888999999999875 3 66666 7777667889999999999877655543
No 11
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=39.84 E-value=20 Score=29.05 Aligned_cols=50 Identities=30% Similarity=0.573 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCchhhhh--hhccCCcccccccCCCCchhHHHHHHHHHHhhhc
Q psy6951 20 LAFRTAERHLGIPALLDA--RESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVN 71 (72)
Q Consensus 20 lAf~~Ae~~lGIp~lLd~--~~~~~~~ed~~~~~~pD~~si~tYls~~~~~f~~ 71 (72)
+.|+ +..+||+|-|++| +..|.-+..+ .++.-|.+++..|++++-.++-+
T Consensus 288 L~~r-~DS~lGvpGLveayr~G~VtiaNA~-GtGV~ddka~~~y~P~~~~~ylg 339 (488)
T COG2308 288 LEFR-ADSALGVPGLVEAYRAGNVTIANAL-GTGVADDKALYAYVPQMIEYYLG 339 (488)
T ss_pred hhcC-ccccccccHHHHHHhcCcEEEecCC-CcCcccchhHHHHHHHHHHHHcc
Confidence 4455 4568999999985 3444445555 67899999999999998776643
No 12
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=35.46 E-value=29 Score=21.73 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=15.1
Q ss_pred ccCCCccCHHhhHHH---HHHHHHHhcCCch
Q psy6951 6 FASLDQRNIYSNNEL---AFRTAERHLGIPA 33 (72)
Q Consensus 6 ~~sl~~~~~~~N~~l---Af~~Ae~~lGIp~ 33 (72)
..++..-+...|-+. -.+.-+++||||+
T Consensus 61 l~sig~~~~~~n~~~s~~i~~~l~~~LgIp~ 91 (114)
T PF01187_consen 61 LKSIGGLDPEQNKKYSAAITEFLEEELGIPP 91 (114)
T ss_dssp EEESSSSSHHHHHHHHHHHHHHHHHHHT--G
T ss_pred EEEccCCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 334443345555444 3677788999985
No 13
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=34.05 E-value=30 Score=22.24 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=16.6
Q ss_pred ccCCCccCHHhhHHHH---HHHHHHhcCCch
Q psy6951 6 FASLDQRNIYSNNELA---FRTAERHLGIPA 33 (72)
Q Consensus 6 ~~sl~~~~~~~N~~lA---f~~Ae~~lGIp~ 33 (72)
..++-.-++..|-+++ +++-+++||||+
T Consensus 63 l~siG~~~~~~n~~~s~~i~~~l~~~LgIp~ 93 (113)
T PTZ00450 63 VEAWGEYAPSKPKMMTPRITAAITKECGIPA 93 (113)
T ss_pred EEEecCcCHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3344444444455443 666688999984
No 14
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=33.21 E-value=27 Score=19.37 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHhcCCchhhh
Q psy6951 16 SNNELAFRTAERHLGIPALLD 36 (72)
Q Consensus 16 ~N~~lAf~~Ae~~lGIp~lLd 36 (72)
++|++|.+.|+ ++|+|.+-.
T Consensus 2 ~~N~~A~~~A~-~~~lp~~~g 21 (56)
T PF13263_consen 2 EANRRAAELAE-KYGLPFTGG 21 (56)
T ss_dssp ----HHHHHHH-HTT--EEEE
T ss_pred cHHHHHHHHHH-HcCCCeEeE
Confidence 46889999997 689998774
No 15
>cd08051 gp6_gp15_like Head-Tail Connector Proteins gp6 and gp15, and similar proteins. Members of this family include the proteins gp6 and gp15 from bacteriophage HK97 and SPP1, respectively. They are critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. They form dodecameric ring structures that comprise the middle ring of the connector, located between the portal protein (attached to the head) and the gp7/gp16 ring (attached to the tail). They are components of the mature phage and the absence or mutation of HK97 gp6 or SPP1 gp15, respectively, result in defective head-tail joining and the absence of mature phage particles. The genome maps of HK97 and SPP1 show that genes encoding gp6 and gp15 are in the same relative position on the genome, located adjacent to the major capsid protein (MCP) gene and in between head and tail gene
Probab=27.96 E-value=1.5e+02 Score=18.34 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=32.0
Q ss_pred CCCCccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCcccccccCCCCchhHHHHHHHHHH
Q psy6951 2 CKDDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ 67 (72)
Q Consensus 2 ~~id~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~ed~~~~~~pD~~si~tYls~~~~ 67 (72)
|-||.+. +..=...=...|.+.+|+++|.+ +.+ .+.. ..+..=++.++.+++.+|.
T Consensus 7 ~~id~d~-dD~lL~~~i~aA~~~~e~~~~~~-~~~-------~~~~-~lp~~vk~A~l~li~~~ye 62 (94)
T cd08051 7 IEFEEDD-RDELLTLYAQAAFDYCXRWCDEP-FWD-------AVAA-DIPAAVKGAVLKVFQFYFE 62 (94)
T ss_pred cCCCCCC-CHHHHHHHHHHHHHHHHHHhccc-ccc-------cccc-CCCHHHHHHHHHHHHHHHH
Confidence 5566552 22223444567889999999975 433 3322 1222225777787777765
No 16
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=27.91 E-value=53 Score=18.49 Aligned_cols=18 Identities=33% Similarity=0.492 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHhcCCch
Q psy6951 16 SNNELAFRTAERHLGIPA 33 (72)
Q Consensus 16 ~N~~lAf~~Ae~~lGIp~ 33 (72)
.+++.|.+.|-+.||+++
T Consensus 5 kt~eeAi~~A~~~l~~~~ 22 (52)
T PF14804_consen 5 KTVEEAIEKALKELGVPR 22 (52)
T ss_dssp SSHHHHHHHHHHHTT--G
T ss_pred CCHHHHHHHHHHHhCCCh
Confidence 367889999999999984
No 17
>KOG0518|consensus
Probab=25.65 E-value=6.1 Score=34.71 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=42.9
Q ss_pred CccCCCccCHHhhHHHHHHHHHHhcCCchhhhhhhccCCc----ccccccCCCCchhHHHHHHH
Q psy6951 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDA----EDMVEYAVPDRLSILTYLSQ 64 (72)
Q Consensus 5 d~~sl~~~~~~~N~~lAf~~Ae~~lGIp~lLd~~~~~~~~----ed~~~~~~pD~~si~tYls~ 64 (72)
+|.-+++.....|++.|++-+++.+-.++... + -+++ ...||+.||++|+++
T Consensus 191 ~f~v~~~Ga~~gnl~~a~~gpse~~~~~~di~-------~g~c~veyi-p~~~gd~sv~~~~gg 246 (1113)
T KOG0518|consen 191 VFEVETPGAGQGNLEVAVEGPSEALTVIPDIK-------PGSCSVEYI-PPEPGDYSVNTYYGG 246 (1113)
T ss_pred eeEEecCCccccceeeeecChhhhcccccccC-------CCcceeeec-CCCCCceEEeeeecc
Confidence 56667777789999999999998888888887 6 4554 378999999999876
No 18
>PF02026 RyR: RyR domain; InterPro: IPR003032 This domain is called RyR for Ryanodine receptor []. The domain is found in four copies in the ryanodine receptor. The function of this domain is unknown.; PDB: 4ETV_A 3RQR_A 4ETT_A 4ERT_A 4ESU_A 4ETU_A 4ERV_A 3NRT_E.
Probab=24.44 E-value=49 Score=20.64 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=16.8
Q ss_pred CCCCccCCCccCHHhhHHHHHHHH
Q psy6951 2 CKDDFASLDQRNIYSNNELAFRTA 25 (72)
Q Consensus 2 ~~id~~sl~~~~~~~N~~lAf~~A 25 (72)
|++.|+.|+......|.+.+.++-
T Consensus 57 ~Lvpy~~L~e~eK~~dr~~~~e~l 80 (94)
T PF02026_consen 57 CLVPYDELSEEEKEKDRDMVRETL 80 (94)
T ss_dssp T-S-GGGS-HHHHHHHHHHHHHHH
T ss_pred CCcChhhCCHHHHHHhHHHHHHHH
Confidence 789999999988888887776653
No 19
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=23.33 E-value=89 Score=17.50 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCchhhhhhh-ccCCcccccc
Q psy6951 21 AFRTAERHLGIPALLDARE-SVLDAEDMVE 49 (72)
Q Consensus 21 Af~~Ae~~lGIp~lLd~~~-~~~~~ed~~~ 49 (72)
|++.|= +||||.++.... ..+++++++.
T Consensus 2 aLk~av-eLgI~dii~~~g~~~ls~~eia~ 30 (51)
T PF08100_consen 2 ALKCAV-ELGIPDIIHNAGGGPLSLSEIAA 30 (51)
T ss_dssp HHHHHH-HTTHHHHHHHHTTS-BEHHHHHH
T ss_pred cHHHHH-HcCcHHHHHHcCCCCCCHHHHHH
Confidence 456563 799999998776 7888888864
No 20
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.32 E-value=61 Score=19.51 Aligned_cols=16 Identities=44% Similarity=0.476 Sum_probs=12.9
Q ss_pred HhhHHHHHHHHHHhcC
Q psy6951 15 YSNNELAFRTAERHLG 30 (72)
Q Consensus 15 ~~N~~lAf~~Ae~~lG 30 (72)
-+|=+.||+.+|.+|-
T Consensus 21 Ae~ee~AF~~~e~ele 36 (64)
T PF13046_consen 21 AENEEQAFRLVEVELE 36 (64)
T ss_pred ecCHHHHHHHHHHHhh
Confidence 4677899999997764
No 21
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.11 E-value=44 Score=21.15 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCccCCCccCHHhhHHHH---------HHH--HHHhcCCchhhh
Q psy6951 4 DDFASLDQRNIYSNNELA---------FRT--AERHLGIPALLD 36 (72)
Q Consensus 4 id~~sl~~~~~~~N~~lA---------f~~--Ae~~lGIp~lLd 36 (72)
+||+..+-.....|++.= |+- ++..+|||+|+-
T Consensus 27 v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~ 70 (85)
T COG4545 27 VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT 70 (85)
T ss_pred CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe
Confidence 577777766677777753 332 345689999987
No 22
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.84 E-value=67 Score=19.99 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=15.7
Q ss_pred cCCCccCHHhhHHHH---HHHHHHhcCCch
Q psy6951 7 ASLDQRNIYSNNELA---FRTAERHLGIPA 33 (72)
Q Consensus 7 ~sl~~~~~~~N~~lA---f~~Ae~~lGIp~ 33 (72)
.++...+...|.+++ .+..+++||||+
T Consensus 64 ~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~ 93 (116)
T PTZ00397 64 TSIGGISRSNNSSIAAAITKILASHLKVKS 93 (116)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 344444555555544 555667889874
Done!