RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6951
(72 letters)
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Length = 121
Score = 88.9 bits (221), Expect = 3e-25
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 7/67 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
DF SLD++N+ NN+LAF AE+ LGI ++ ++M PD+LS++ YL+Q
Sbjct: 56 DFDSLDEQNVEKNNQLAFDIAEKELGISPIMTG-------KEMASVGEPDKLSMVMYLTQ 108
Query: 65 FYQVFVN 71
FY++F +
Sbjct: 109 FYEMFKD 115
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain,
actin binding, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2jv9_A 2k3s_A
Length = 128
Score = 87.4 bits (217), Expect = 2e-24
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ L +N N E+AF +AE H P LLD EDMV PD + TY+ +
Sbjct: 54 DYGQLSPQNRRQNFEVAFSSAETHADCPQLLDT-------EDMVRLREPDWKCVYTYIQE 106
Query: 65 FYQVFVNQ 72
FY+ V +
Sbjct: 107 FYRCLVQK 114
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
CH domain, mical, structural genomics; NMR {Homo
sapiens} PDB: 2dk9_A
Length = 116
Score = 82.3 bits (204), Expect = 1e-22
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
+ + L A + AE LGI + + A+ +V D L ++ YLS
Sbjct: 54 EPSELQGLGALEATAWALKVAENELGITPV-------VSAQAVVA--GSDPLGLIAYLSH 104
Query: 65 FYQVF 69
F+ F
Sbjct: 105 FHSAF 109
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 80.4 bits (199), Expect = 6e-22
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ SL+ ++I NN+ A+ +GI LL+ DMV A+PD+L+++TYL Q
Sbjct: 56 DYKSLNPQDIKENNKKAY-DGFASIGISRLLEP-------SDMVLLAIPDKLTVMTYLYQ 107
Query: 65 FYQVF 69
F
Sbjct: 108 IRAHF 112
>1bhd_A Utrophin; calponin homology, actin binding, structural protein;
2.00A {Homo sapiens} SCOP: a.40.1.1
Length = 118
Score = 80.4 bits (199), Expect = 6e-22
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
+ + + + E AF A+ +LGI L LD ED+ +PD+ SI+ YL+
Sbjct: 55 SWDKVVKMSPIERLEHAFSKAQTYLGIEKL-------LDPEDVAV-RLPDKKSIIMYLTS 106
Query: 65 FYQVFVNQ 72
++V Q
Sbjct: 107 LFEVLPQQ 114
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain,
contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A
2r0o_A 2eyi_A 2eyn_A 3lue_K
Length = 254
Score = 83.8 bits (207), Expect = 7e-22
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+A L + + N AF AE++L IP +LDA ED+V PD +I+TY+S
Sbjct: 187 DYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDA-------EDIVNTPKPDEKAIMTYVSC 239
Query: 65 FYQVFVNQ 72
FY F
Sbjct: 240 FYHAFAGA 247
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
structural protein; NMR {Homo sapiens}
Length = 127
Score = 79.7 bits (197), Expect = 2e-21
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
DF SL + N + N + AF AE+ LG+ LLD + V PD SI+TY++
Sbjct: 54 DFESLKKCNAHYNLQNAFNLAEKELGLTKLLDP--------EDVNVDQPDEKSIITYVAT 105
Query: 65 FYQVF 69
+Y F
Sbjct: 106 YYHYF 110
>1bkr_A Spectrin beta chain; filamentous actin-binding domain,
cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB:
1aa2_A
Length = 109
Score = 78.8 bits (195), Expect = 2e-21
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
DF L + N + N + AF AE+HLG+ L LD ED+ PD SI+TY+
Sbjct: 50 DFDKLKKSNAHYNLQNAFNLAEQHLGLTKL-------LDPEDISV-DHPDEKSIITYVVT 101
Query: 65 FYQVF 69
+Y F
Sbjct: 102 YYHYF 106
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis
bullosa, actin-binding, alternative splicing, coiled
coil, cytoplasm; 2.75A {Homo sapiens}
Length = 296
Score = 75.2 bits (184), Expect = 2e-18
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D + ++ N + AF AER LG+ L LD ED+ PD SI+TY+S
Sbjct: 236 DMNKVYRQTNLENLDQAFSVAERDLGVTRL-------LDPEDVDV-PQPDEKSIITYVSS 287
Query: 65 FYQVF 69
Y
Sbjct: 288 LYDAM 292
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology
domain, structural protein; 2.00A {Mus musculus} SCOP:
a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Length = 245
Score = 73.1 bits (179), Expect = 8e-18
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D + ++ N + AF AER LG+ L LD ED+ PD SI+TY+S
Sbjct: 180 DMNKVYRQTNLENLDQAFSVAERDLGVTRL-------LDPEDVDV-PQPDEKSIITYVSS 231
Query: 65 FYQVF 69
Y
Sbjct: 232 LYDAM 236
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin
homology domain, actin-binding, utrophin; 2.6A {Homo
sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Length = 246
Score = 68.5 bits (167), Expect = 4e-16
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 4 DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
D + + Q++ E AF A LGI L LD ED+ PD+ SIL Y++
Sbjct: 182 DWNSVVSQQSATQRLEHAFNIARYQLGIEKL-------LDPEDVDT-TYPDKKSILMYIT 233
Query: 64 QFYQVFVNQ 72
+QV Q
Sbjct: 234 SLFQVLPQQ 242
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 61.6 bits (149), Expect = 2e-13
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 4 DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
D+ S D +N A + A+ LGIP + + E++V+ D+ S++TYLS
Sbjct: 214 PDWDSWDASKPVTNAREAMQQADDWLGIPQV-------ITPEEIVD-PNVDKHSVMTYLS 265
Query: 64 QFYQV 68
QF +
Sbjct: 266 QFPKA 270
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 58.8 bits (142), Expect = 1e-12
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 4 DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
D+ S D + N A + A+ LG+P + + E+++ D S++TYLS
Sbjct: 187 PDWESWDPQKPVDNAREAVQQADDWLGVPQV-------ITPEEIIH-PDVDEHSVMTYLS 238
Query: 64 QFYQV 68
QF +
Sbjct: 239 QFPKA 243
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation;
2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Length = 275
Score = 53.0 bits (127), Expect = 3e-10
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
+ + ++ + E + A++ LG + D+V + L +++
Sbjct: 224 NMSGFNETDDLKRAESMLQQADK-LGCRQFVTP-------ADVV---SGNPKLNLAFVAN 272
Query: 65 FY 66
+
Sbjct: 273 LF 274
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 53.0 bits (126), Expect = 3e-10
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D+ L + + +N AF AE++L IP + LDAED+V A PD +I+TY+S
Sbjct: 168 DYGKLRKDDPLTNLNTAFDVAEKYLDIPKM-------LDAEDIVGTARPDEKAIMTYVSS 220
Query: 65 FYQVFVNQ 72
FY F
Sbjct: 221 FYHAFSGA 228
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology,
actin-crosslinking, structural protein; 2.00A
{Schizosaccharomyces pombe} SCOP: a.40.1.1
Length = 513
Score = 48.6 bits (115), Expect = 1e-08
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 11/61 (18%)
Query: 8 SLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ 67
+ N LA A R LG + ED+V +L ++
Sbjct: 464 GSTEELAIQNARLAISIA-RKLGAVIFILP-------EDIVA---VRPRLVLHFIGSLMA 512
Query: 68 V 68
V
Sbjct: 513 V 513
Score = 39.7 bits (92), Expect = 1e-05
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 11/65 (16%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
A L ++ E + AE+ L L MV + L +++
Sbjct: 209 SRAPLQTTDVLQRAEQVLQNAEK-LDCRKY-------LTPTAMV---AGNPKLNLAFVAH 257
Query: 65 FYQVF 69
+
Sbjct: 258 LFNTH 262
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain
(ABD), F-actin- crosslinking, structural genomics; 2.40A
{Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Length = 506
Score = 48.5 bits (115), Expect = 1e-08
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)
Query: 13 NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 72
N + R LG L ED+VE ++ IL + + +
Sbjct: 458 EKRLNATYIV-SVARKLGCSVFLLP-------EDIVE---VNQKMILILTASIMYWSLQR 506
Score = 41.2 bits (96), Expect = 4e-06
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 5 DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
D A+LD ++ EL AER + L AE++VE L +++Q
Sbjct: 200 DPATLDAKDPLERAELVLSHAER-MNCKRY-------LTAEEIVE---GSSTLNLAFVAQ 248
Query: 65 FYQ 67
+
Sbjct: 249 IFH 251
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 25.5 bits (57), Expect = 1.6
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 16 SNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVP-DRLSI 58
++ +R AL A+ S+ + + +P D +I
Sbjct: 388 QAADMDLAINQRQAA--ALTQAKMSLEQVQATITQQLPLDFWTI 429
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 24.8 bits (55), Expect = 2.4
Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 16 SNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVP-DRLSI 58
+ T+ RH AL +A +++ +A +++ + + ++
Sbjct: 402 LHEASVLVTSLRHYE--ALRNASDALQNALELIAHESETELIAF 443
>3n5o_A Glutathione transferase; seattle structural genomics center for
infectious disease, S GST, pathogenic fungus,
coccidioidomycosis; HET: GSH; 1.85A {Coccidioides
immitis} PDB: 3lg6_A*
Length = 235
Score = 24.7 bits (54), Expect = 3.0
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 31 IPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFY 66
+P L+ + + + +++ L+ L YL +
Sbjct: 61 VPLLVVSNINNTVSPSSASFSIGQSLAALEYLEEAL 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.383
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,074,434
Number of extensions: 51006
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 25
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)