RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy6951
         (72 letters)



>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 108

 Score = 64.8 bits (158), Expect = 3e-16
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
            +  + + +     E AF  A+ +LGI  L       LD ED+    +PD+ SI+ YL+ 
Sbjct: 52  SWDKVVKMSPIERLEHAFSKAQTYLGIEKL-------LDPEDVAV-RLPDKKSIIMYLTS 103

Query: 65  FYQV 68
            ++V
Sbjct: 104 LFEV 107


>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 63.4 bits (154), Expect = 1e-15
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D   + ++    N + AF  AER LG+  L       LD ED+     PD  SI+TY+S 
Sbjct: 53  DMNKVYRQTNLENLDQAFSVAERDLGVTRL-------LDPEDVDV-PQPDEKSIITYVSS 104

Query: 65  FYQVF 69
            Y   
Sbjct: 105 LYDAM 109


>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 127

 Score = 59.9 bits (145), Expect = 3e-14
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 4   DDFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLS 63
           D  + + Q++     E AF  A   LGI  L       LD ED+     PD+ SIL Y++
Sbjct: 63  DWNSVVSQQSATQRLEHAFNIARYQLGIEKL-------LDPEDVDT-TYPDKKSILMYIT 114

Query: 64  QFYQVFVNQ 72
             +QV   Q
Sbjct: 115 SLFQVLPQQ 123


>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 108

 Score = 58.1 bits (140), Expect = 1e-13
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           DF  L + N + N + AF  AE+HLG+  LLD  +  +D         PD  SI+TY+  
Sbjct: 49  DFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVD--------HPDEKSIITYVVT 100

Query: 65  FYQVF 69
           +Y  F
Sbjct: 101 YYHYF 105


>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 500

 Score = 47.7 bits (113), Expect = 8e-09
 Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 11/60 (18%)

Query: 13  NIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 72
               N      +  R LG    L         ED+VE    ++  IL   +      + +
Sbjct: 452 EKRLNATYIV-SVARKLGCSVFLLP-------EDIVE---VNQKMILILTASIMYWSLQR 500



 Score = 45.4 bits (107), Expect = 5e-08
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
           D A+LD ++     EL    AER +     L A       E++VE         L +++Q
Sbjct: 194 DPATLDAKDPLERAELVLSHAER-MNCKRYLTA-------EEIVE---GSSTLNLAFVAQ 242

Query: 65  FYQVFVNQ 72
            +      
Sbjct: 243 IFHERNGL 250


>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 505

 Score = 43.1 bits (101), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 11/61 (18%)

Query: 8   SLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQFYQ 67
              +     N  LA   A R LG    +         ED+V         +L ++     
Sbjct: 456 GSTEELAIQNARLAISIA-RKLGAVIFILP-------EDIVA---VRPRLVLHFIGSLMA 504

Query: 68  V 68
           V
Sbjct: 505 V 505



 Score = 41.2 bits (96), Expect = 2e-06
 Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 11/65 (16%)

Query: 5   DFASLDQRNIYSNNELAFRTAERHLGIPALLDARESVLDAEDMVEYAVPDRLSILTYLSQ 64
             A L   ++    E   + AE  L            L    MV     +    L +++ 
Sbjct: 201 SRAPLQTTDVLQRAEQVLQNAE-KLDCRKY-------LTPTAMVA---GNPKLNLAFVAH 249

Query: 65  FYQVF 69
            +   
Sbjct: 250 LFNTH 254


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 246,578
Number of extensions: 8500
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 9
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)