BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6952
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3
Protein
Length = 121
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
IDF SLD++N+ NN+LAF AE+ LGI ++ ++M PD+LS++ YL+QFY++F
Sbjct: 55 IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 114
Query: 63 N 63
+
Sbjct: 115 D 115
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
pdb|1WKU|B Chain B, High Resolution Structure Of The Human Alpha-Actinin
Isoform 3
Length = 254
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+A L + + N AF AE++L IP +LDAED+V PD +I+TY+S FY F
Sbjct: 186 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 245
Query: 63 NQKQGKSPA 71
+Q ++ A
Sbjct: 246 GAEQAETAA 254
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At
2.2a Resolution
Length = 250
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+A L + + N AF AE++L IP +LDAED+V PD +I+TY+S FY F
Sbjct: 182 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 241
Query: 63 NQKQGKSPA 71
+Q ++ A
Sbjct: 242 GAEQAETAA 250
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2
Length = 121
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
I+F SL++ + NN+LAF AER GIP + ++M PD+LS++ YLS+FY++F
Sbjct: 55 INFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELF 113
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 60.8 bits (146), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+ L + + +N AF AE++L IP +LDAED+V A PD +I+TY+S FY F
Sbjct: 167 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFS 226
Query: 63 NQKQGKSPA 71
++ ++ A
Sbjct: 227 GAQKAETAA 235
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.7 Angstrom Resolution
pdb|2EYN|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin 1 At 1.8 Angstrom Resolution
Length = 234
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+ L + + +N AF AE++L IP +LDAED+V A PD +I+TY+S FY F
Sbjct: 166 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFS 225
Query: 63 NQKQGKSPA 71
++ P
Sbjct: 226 GAQEFLEPG 234
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
pdb|2R0O|B Chain B, Crystal Structure Of The Actin-Binding Domain Of Human
Alpha-Actinin-4 Mutant(K255e)
Length = 237
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
I++ L + + +N AF AE++L IP +LDAED+V A PD +I+TY+S FY F
Sbjct: 171 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEEAIMTYVSSFYHAF 229
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin
Splice Isoform L2
Length = 128
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
D+ L +N N E+AF +AE H P LLD EDMV PD + TY+ +FY+ V
Sbjct: 53 FDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLV 112
Query: 63 NQ 64
+
Sbjct: 113 QK 114
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human
Spectrin Beta Chain, Brain 2
Length = 127
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
+DF SL + N + N + AF AE+ LG+ LLD ED V PD SI+TY++ +Y F
Sbjct: 53 LDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPED-VNVDQPDEKSIITYVATYYHYFS 111
Query: 63 NQK----QGKS 69
K +GKS
Sbjct: 112 KMKALAVEGKS 122
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At
1.1 Angstrom Resolution
Length = 109
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
IDF L + N + N + AF AE+HLG+ LLD ED + PD SI+TY+ +Y F
Sbjct: 49 IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 106
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
Length = 108
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
IDF L + N + N + AF AE+HLG+ LLD ED + PD SI+TY+ +Y F
Sbjct: 48 IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 105
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From
Smoothelin-Like 1
pdb|2K3S|A Chain A, Haddock-Derived Structure Of The Ch-Domain Of The
Smoothelin-Like 1 Complexed With The C-Domain Of
Apocalmodulin
Length = 119
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
D+A LD N LAF TAE+ LL+ +DMV AVPD + TY+ + Y+ V
Sbjct: 50 FDYAELDPAKRRHNFTLAFSTAEKLADCAQLLEVDDMVRLAVPDSKCVYTYIQELYRSLV 109
Query: 63 NQ 64
+
Sbjct: 110 QK 111
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain
Binding Protein 1
Length = 119
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
ID+ SL+ ++I NN+ A+ +GI LL+ DMV A+PD+L+++TYL YQ+
Sbjct: 55 IDYKSLNPQDIKENNKKAY-DGFASIGISRLLEPSDMVLLAIPDKLTVMTYL---YQIRA 110
Query: 63 NQKQGKS 69
+ G S
Sbjct: 111 HFSSGPS 117
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH5|B Chain B, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
pdb|1SH6|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin
Length = 245
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
M ID + ++ N + AF AER LG+ LLD ED V+ PD SI+TY+S Y
Sbjct: 177 MLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLY 233
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|B Chain B, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 296
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
ID + ++ N + AF AER LG+ LLD ED V+ PD SI+TY+S Y
Sbjct: 235 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAM 292
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin
Length = 243
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
ID + ++ N + AF AER LG+ LLD ED V+ PD SI+TY+S Y
Sbjct: 182 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAM 239
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|B Chain B, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|C Chain C, N-Terminal Actin-Binding Domain Of Human Dystrophin
pdb|1DXX|D Chain D, N-Terminal Actin-Binding Domain Of Human Dystrophin
Length = 246
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 18 ELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 64
E AF A LGI LLD ED V+ PD+ SIL Y++ +QV Q
Sbjct: 197 EHAFNIARYQLGIEKLLDPED-VDTTYPDKKSILMYITSLFQVLPQQ 242
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin
pdb|1BHD|B Chain B, Second Calponin Homology Domain From Utrophin
Length = 118
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 18 ELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 64
E AF A+ +LGI LLD ED V +PD+ SI+ YL+ ++V Q
Sbjct: 69 EHAFSKAQTYLGIEKLLDPED-VAVRLPDKKSIIMYLTSLFEVLPQQ 114
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
pdb|3HOC|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
Mutant E254k
Length = 272
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
D+ S D +N A + A+ LGIP ++ E++V+ V D+ S++TYLSQF
Sbjct: 215 DWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNV-DKHSVMTYLSQF 267
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin
pdb|1QAG|B Chain B, Actin Binding Region Of The Dystrophin Homologue Utrophin
Length = 226
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18 ELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
E AF A+ +LGI LLD ED V +PD+ SI+ YL+ ++V
Sbjct: 182 EHAFSKAQTYLGIEKLLDPED-VAVRLPDKKSIIXYLTSLFEVL 224
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain
pdb|2WFN|B Chain B, Filamin A Actin Binding Domain
Length = 278
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
D+ S D +N A + A+ LGIP ++ E++V+ V D S++TYLSQF
Sbjct: 212 DWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNV-DEHSVMTYLSQF 264
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOP|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
pdb|3HOR|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
pdb|3HOR|B Chain B, Structure Of The Actin-Binding Domain Of Human Filamin A
(Reduced)
Length = 272
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
D+ S D +N A + A+ LGIP ++ E++V+ V D S++TYLSQF
Sbjct: 215 DWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNV-DEHSVMTYLSQF 267
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
pdb|4B7L|B Chain B, Crystal Structure Of Human Filamin B Actin Binding Domain
With 1st Filamin Repeat
Length = 347
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
D+ S D + N A + A+ LG+P ++ E+++ V D S++TYLSQF
Sbjct: 185 DWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDV-DEHSVMTYLSQF 237
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain
At 1.9 Angstroms Resolution
Length = 245
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
D+ S D + N A + A+ LG+P ++ E+++ V D S++TYLSQF
Sbjct: 188 DWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDV-DEHSVMTYLSQF 240
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin
Binding Domain At 1.95 Angstroms Resolution
Length = 245
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
D+ S D + N A + A+ LG+P ++ E+++ V D S++TYLSQF
Sbjct: 188 DWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDV-DEHSVMTYLSQF 240
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin
Binding Domain At 1.85 Angstroms Resolution
Length = 245
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
D+ S D + N A + A+ LG+P ++ E+++ V D S++TYLSQF
Sbjct: 188 DWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIHPDV-DEHSVMTYLSQF 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,274,430
Number of Sequences: 62578
Number of extensions: 138670
Number of successful extensions: 290
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 31
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)