Query psy6952
Match_columns 168
No_of_seqs 168 out of 610
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 22:55:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.9 1.6E-26 3.6E-31 229.8 4.1 111 1-119 211-322 (2473)
2 KOG0035|consensus 99.7 4E-19 8.7E-24 170.6 3.5 121 1-130 186-310 (890)
3 COG5069 SAC6 Ca2+-binding acti 99.0 6.3E-11 1.4E-15 108.7 1.8 76 1-76 170-248 (612)
4 PF00307 CH: Calponin homology 98.1 1.3E-06 2.8E-11 62.7 1.7 58 3-62 46-108 (108)
5 cd00014 CH Calponin homology d 97.6 2.6E-05 5.7E-10 55.9 2.0 52 8-62 55-107 (107)
6 smart00033 CH Calponin homolog 95.5 0.0029 6.2E-08 44.7 -0.5 45 11-56 58-102 (103)
7 PF11971 CAMSAP_CH: CAMSAP CH 58.8 6.9 0.00015 28.2 1.8 35 7-41 48-83 (85)
8 KOG0046|consensus 30.8 14 0.0003 35.5 -0.5 51 3-57 557-611 (627)
9 COG5136 U1 snRNP-specific prot 24.0 1.7E+02 0.0037 24.2 4.7 43 91-133 32-77 (188)
10 KOG0518|consensus 22.7 29 0.00064 35.7 0.1 52 4-56 191-246 (1113)
11 COG3461 Uncharacterized conser 21.8 1.1E+02 0.0023 23.0 2.9 27 90-116 50-78 (103)
12 COG0026 PurK Phosphoribosylami 21.3 32 0.00069 31.5 0.0 15 145-159 261-276 (375)
No 1
>KOG0517|consensus
Probab=99.92 E-value=1.6e-26 Score=229.81 Aligned_cols=111 Identities=30% Similarity=0.396 Sum_probs=102.6
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch-hhhhcccc
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA-RCNMFVNS 79 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~-~~~~~~~~ 79 (168)
|||||++|.|.++..|++.||++||++|||+++|||||+ ++..||||||||||+.|||||+++++..+.+ |+.+++++
T Consensus 211 DLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV-~v~~PDEKSIITYV~~YYHyFsKmK~~~v~gKRIgkVl~~ 289 (2473)
T KOG0517|consen 211 DLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDV-NVEQPDEKSIITYVVTYYHYFSKMKQLAVEGKRIGKVLDQ 289 (2473)
T ss_pred chhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhc-CccCCCcchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 799999999999999999999999999999999999999 8999999999999999999999999887765 79999888
Q ss_pred ccCcchhhHHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhh
Q psy6952 80 TLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTV 119 (168)
Q Consensus 80 ~~~~~~~~~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~ 119 (168)
.++ .++++. .||.++++||.||++|+.-|+.+.
T Consensus 290 lme-----~ekm~~--~YE~LasdLL~WI~~ti~~L~~R~ 322 (2473)
T KOG0517|consen 290 LME-----TEKMIE--QYEGLASDLLEWIEQTIQTLESRK 322 (2473)
T ss_pred HHH-----HHHHHH--HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 876 677776 688999999999999999888764
No 2
>KOG0035|consensus
Probab=99.75 E-value=4e-19 Score=170.56 Aligned_cols=121 Identities=35% Similarity=0.569 Sum_probs=105.5
Q ss_pred CCcC-CccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch--hhhhc-
Q psy6952 1 MKID-FASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA--RCNMF- 76 (168)
Q Consensus 1 ~LID-~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~--~~~~~- 76 (168)
+||| |+++.++++.+|++.||++||+++|||++||+||++....||+++||||++++||+|++.++.++.+ +|...
T Consensus 186 dli~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~~~~~pde~aimtyv~~~~~~fSg~~~~~t~~n~i~s~~a 265 (890)
T KOG0035|consen 186 DLIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIVEAAIPDEKAIMTYVSSYYHAFSGAEAAETAANRICSVLA 265 (890)
T ss_pred hhhhhhhhcCccchhHHhhhhhhhhhhcCCcccccCccccccCCCCchhhhhhhhhhccccccCcchhhhhcccccchhh
Confidence 5899 9999999999999999999999999999999999999999999999999999999999999888776 35444
Q ss_pred cccccCcchhhHHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCc
Q psy6952 77 VNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNIGSSSPNSK 130 (168)
Q Consensus 77 ~~~~~~~~~~~~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~~~~~~~~~~~k 130 (168)
+++. ++..|+ +|+++++.++.||++++||+...+..--...+.-|
T Consensus 266 v~qe-------~~~~~e--~~e~~~s~~l~~~~~~~P~l~~r~~~~~~~~~q~~ 310 (890)
T KOG0035|consen 266 VNQE-------KETTME--EYETLASELLEWIARRTPWLQNRVTDSVGAKAQRK 310 (890)
T ss_pred cccc-------ccchHH--HHHHHhhhhhhHHHhcCcccccccccchhhhhccc
Confidence 6665 566777 78899999999999999999988765555544444
No 3
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=99.04 E-value=6.3e-11 Score=108.69 Aligned_cols=76 Identities=32% Similarity=0.417 Sum_probs=68.4
Q ss_pred CCcCCccCC--CcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch-hhhhc
Q psy6952 1 MKIDFASLD--QRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA-RCNMF 76 (168)
Q Consensus 1 ~LID~dsL~--~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~-~~~~~ 76 (168)
|+||++.|+ +.++..|+.+||++|++.+||++++++||++++..|||+|+||||+-+|+.|+-..+...+. |+..+
T Consensus 170 Dtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~vedivnV~~pDERsimtyv~~y~~rf~~l~Kid~al~rv~rl 248 (612)
T COG5069 170 DTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRFGLLEKIDIALHRVYRL 248 (612)
T ss_pred cccCccccchhhcccchhHHHHHHHHHHhhchHhhcCcceeeecCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578999999 88899999999999999999999999999999999999999999999999999888877655 44433
No 4
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=98.10 E-value=1.3e-06 Score=62.70 Aligned_cols=58 Identities=41% Similarity=0.690 Sum_probs=48.8
Q ss_pred cCCccCCCc-----ChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhh
Q psy6952 3 IDFASLDQR-----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62 (168)
Q Consensus 3 ID~dsL~~~-----~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~ 62 (168)
|++..+.+. +..+|++.|++.+++++|+|..++++|+.. .+|++.|++|+.+++++|.
T Consensus 46 i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~~~~dl~~--~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 46 IDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLLSPEDLVE--KGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp SSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS-HHHHHS--TT-HHHHHHHHHHHHHHHT
T ss_pred chhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH--CcCHHHHHHHHHHHHHHHC
Confidence 566666443 689999999999998899999999999964 7999999999999999984
No 5
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=97.64 E-value=2.6e-05 Score=55.88 Aligned_cols=52 Identities=37% Similarity=0.527 Sum_probs=45.7
Q ss_pred CCCcChhhhHHHHHHHHHHhcCCCcc-cCccccccCCCCCccceeeecchhhhhhh
Q psy6952 8 LDQRNIYSNNELAFRTAERHLGIPAL-LDAEDMVEYAVPDRLSILTYLSQFYQVFV 62 (168)
Q Consensus 8 L~~~~~~eNl~lAF~vAE~~LGIp~l-LdpED~~~~~~PDekSVmTYVs~~y~~f~ 62 (168)
.......+|++.+++.+++ +|||.. ++|+|+.+ .+|+++|++|+.+++++|.
T Consensus 55 ~~~~~~~~Ni~~~l~~~~~-~gi~~~~~~~~Dl~~--~~n~~~vl~~l~~l~~~~~ 107 (107)
T cd00014 55 LSRFKRLENINLALNFAEK-LGVPVVNFDAEDLVE--DGDEKLVLGLLWSLIRKFL 107 (107)
T ss_pred cchhhHHHHHHHHHHHHHH-cCCceeccCHHHHhh--CCCceeeHHHHHHHHHhhC
Confidence 3456678999999999986 999999 99999964 7999999999999998874
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=95.52 E-value=0.0029 Score=44.65 Aligned_cols=45 Identities=29% Similarity=0.216 Sum_probs=36.6
Q ss_pred cChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecch
Q psy6952 11 RNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQ 56 (168)
Q Consensus 11 ~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~ 56 (168)
....+|++.+++.+++....+.+++|+|+.+.. ++.++++.|+.+
T Consensus 58 ~~~~~Ni~~~l~~~~~~g~~~~~~~~~Dl~~~~-k~~~~v~~~l~~ 102 (103)
T smart00033 58 FKKIENINLALSFAEKLGGKLVLFEPEDLVEGN-KLILGVIWTLIL 102 (103)
T ss_pred HHHHHhHHHHHHHHHHcCCeeeccCHHHHhhcc-hHHHHHHHHHHh
Confidence 456899999999999763348999999998744 899999888764
No 7
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=58.77 E-value=6.9 Score=28.25 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=27.8
Q ss_pred cCCCcChhhhHHHHHHHHHHhcCC-CcccCcccccc
Q psy6952 7 SLDQRNIYSNNELAFRTAERHLGI-PALLDAEDMVE 41 (168)
Q Consensus 7 sL~~~~~~eNl~lAF~vAE~~LGI-p~lLdpED~~~ 41 (168)
..+..+...|+++..+.+.++||. +.-|++|||..
T Consensus 48 ~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~edl~~ 83 (85)
T PF11971_consen 48 TMSQADSLYNLQLLNSFCQSHLGFSCCHLEPEDLLY 83 (85)
T ss_pred chHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHHHhc
Confidence 444567789999999999999977 45569999854
No 8
>KOG0046|consensus
Probab=30.78 E-value=14 Score=35.51 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=40.3
Q ss_pred cCCccCC----CcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchh
Q psy6952 3 IDFASLD----QRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57 (168)
Q Consensus 3 ID~dsL~----~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~ 57 (168)
|||+=+. .+++..|.+.|..+|. .+|-.-.+-|||++. ..+|-|||..+++
T Consensus 557 Vn~~LV~~G~t~EdK~~NAkYaIS~AR-KiGa~IyaLPEDIvE---V~pKMvltvfA~l 611 (627)
T KOG0046|consen 557 VNYSLVTSGNTDEEKLLNAKYAISVAR-KLGASIYALPEDIVE---VNPKMVLTVFASL 611 (627)
T ss_pred cchhhccCCCChhhhhhcchhhHhHHH-hhCceEEeccHHHhh---hchhhhHHHHHHH
Confidence 4554443 4577889999999995 699999999999976 4677889887765
No 9
>COG5136 U1 snRNP-specific protein C [RNA processing and modification]
Probab=23.97 E-value=1.7e+02 Score=24.17 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=26.4
Q ss_pred HHHHhhHHhHHHHHHHHHHhhhhhhhhh---hcCCCCCCCCCcccc
Q psy6952 91 LIRSAGQLNLSSLLISMIAEGSAWSAYT---VRNIGSSSPNSKILP 133 (168)
Q Consensus 91 lm~~~~y~~l~s~Ll~wi~~~~~wl~~~---~~~~~~~~~~~k~~~ 133 (168)
+|+..||.+++.++.+=...+..-.... ..|.|.-|++-+--+
T Consensus 32 ~~~~dYY~~~a~di~~e~~~~lr~i~~~G~kv~c~gnks~~~p~~~ 77 (188)
T COG5136 32 LMRKDYYMEMAEDIAAEMASILRDIKTAGEKVECEGNKSTSYPPFP 77 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEeccCCccCCCCcc
Confidence 5677789999997655444333333333 467777776655433
No 10
>KOG0518|consensus
Probab=22.68 E-value=29 Score=35.71 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=43.0
Q ss_pred CCccCCCcChhhhHHHHHHHHHHhcCCCcccCc----cccccCCCCCccceeeecch
Q psy6952 4 DFASLDQRNIYSNNELAFRTAERHLGIPALLDA----EDMVEYAVPDRLSILTYLSQ 56 (168)
Q Consensus 4 D~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdp----ED~~~~~~PDekSVmTYVs~ 56 (168)
+|.-..+....+|+..|++-+++.+-.++...+ -++. ...||+.+|++|.++
T Consensus 191 ~f~v~~~Ga~~gnl~~a~~gpse~~~~~~di~~g~c~veyi-p~~~gd~sv~~~~gg 246 (1113)
T KOG0518|consen 191 VFEVETPGAGQGNLEVAVEGPSEALTVIPDIKPGSCSVEYI-PPEPGDYSVNTYYGG 246 (1113)
T ss_pred eeEEecCCccccceeeeecChhhhcccccccCCCcceeeec-CCCCCceEEeeeecc
Confidence 455566778899999999999988888888887 5563 478999999999877
No 11
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=21.83 E-value=1.1e+02 Score=23.04 Aligned_cols=27 Identities=4% Similarity=0.101 Sum_probs=18.7
Q ss_pred HHHHHh--hHHhHHHHHHHHHHhhhhhhh
Q psy6952 90 HLIRSA--GQLNLSSLLISMIAEGSAWSA 116 (168)
Q Consensus 90 ~lm~~~--~y~~l~s~Ll~wi~~~~~wl~ 116 (168)
.+|+.. ++.+-+..||+|++++.+-..
T Consensus 50 ~ImehnrdeE~eHa~mlLEwlrR~~p~wd 78 (103)
T COG3461 50 AIMEHNRDEEKEHAAMLLEWLRRHDPAWD 78 (103)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHcCchHH
Confidence 345443 456677899999999887433
No 12
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=21.25 E-value=32 Score=31.51 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=11.4
Q ss_pred hheeee-cccceeeee
Q psy6952 145 VVVLAI-HNKGHVILG 159 (168)
Q Consensus 145 ~~~~~~-~~~~~~~~~ 159 (168)
||++-| |||||.|.-
T Consensus 261 NEiAPRvHNSGH~T~~ 276 (375)
T COG0026 261 NEIAPRVHNSGHWTID 276 (375)
T ss_pred eeccCCCCCccccchh
Confidence 666665 999998863
Done!