Query psy6952
Match_columns 168
No_of_seqs 168 out of 610
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 22:56:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bkr_A Spectrin beta chain; fi 99.8 5.9E-20 2E-24 136.8 2.7 63 1-64 47-109 (109)
2 1wyq_A Spectrin beta chain, br 99.8 1.3E-19 4.4E-24 138.4 4.4 70 1-71 51-120 (127)
3 2d88_A Protein mical-3; all al 99.8 1.9E-19 6.3E-24 136.4 3.5 66 1-66 53-118 (121)
4 2d87_A Smoothelin splice isofo 99.7 2.9E-19 9.8E-24 136.7 3.1 69 1-69 51-119 (128)
5 1wyl_A NEDD9 interacting prote 99.7 2.8E-19 9.4E-24 134.4 2.3 65 1-67 51-115 (116)
6 1sjj_A Actinin; 3-helix bundle 99.7 1.2E-18 4.1E-23 163.1 4.1 112 1-119 165-277 (863)
7 2d89_A EHBP1 protein; all alph 99.7 1.1E-18 3.7E-23 131.7 2.7 66 1-67 53-118 (119)
8 1bhd_A Utrophin; calponin homo 99.7 4E-19 1.4E-23 134.0 -0.8 66 1-67 52-117 (118)
9 1wku_A Alpha-actinin 3; calpon 99.6 1.4E-16 4.8E-21 133.1 2.7 70 1-70 184-253 (254)
10 4b7l_A Filamin-B; structural p 99.6 6E-16 2.1E-20 134.7 3.0 64 2-66 182-246 (347)
11 3f7p_A Plectin-1; plakin, hemi 99.5 1.2E-15 4E-20 130.9 0.5 64 1-65 233-296 (296)
12 3hoc_A Filamin-A; calponin hom 99.5 5E-15 1.7E-19 125.5 2.4 59 1-60 211-270 (272)
13 2wa7_A Filamin-B; disease muta 99.5 1E-14 3.5E-19 120.9 2.9 59 1-60 184-243 (245)
14 1sh5_A Plectin 1, PLTN, PCN; a 99.4 8.2E-15 2.8E-19 121.1 -0.0 67 1-68 177-243 (245)
15 1dxx_A Dystrophin; structural 99.4 3.7E-14 1.3E-18 117.5 -0.8 65 1-66 179-244 (246)
16 1rt8_A Fimbrin; filamentous ac 99.1 4.4E-11 1.5E-15 108.2 4.2 65 1-69 206-270 (513)
17 1pxy_A Fimbrin-like protein; c 99.0 3.6E-11 1.2E-15 108.5 1.5 59 1-63 443-505 (506)
18 1pxy_A Fimbrin-like protein; c 98.9 3.3E-10 1.1E-14 102.2 3.4 63 2-68 198-260 (506)
19 1wjo_A T-plastin; CH domain, a 98.9 2.7E-10 9.2E-15 86.9 2.4 63 1-67 53-120 (124)
20 1rt8_A Fimbrin; filamentous ac 98.9 2E-10 6.8E-15 103.9 0.9 55 1-59 454-512 (513)
21 1aoa_A T-fimbrin; actin-bindin 97.3 2.4E-05 8.3E-10 65.3 -1.4 45 12-59 229-275 (275)
22 2odv_A Plectin 1, HD1; plakin 94.4 0.026 8.8E-07 46.5 3.3 30 88-119 9-38 (235)
23 2vzc_A Alpha-parvin; membrane, 62.0 3.3 0.00011 30.7 1.7 49 11-63 80-129 (131)
24 2yrn_A Neuron navigator 2 isof 58.8 3.2 0.00011 30.4 1.1 52 11-66 76-128 (129)
25 4b7l_A Filamin-B; structural p 47.2 11 0.00038 32.1 2.8 47 13-63 76-123 (347)
26 1hci_A Alpha-actinin 2; triple 46.7 18 0.0006 30.8 4.0 28 89-118 10-37 (476)
27 3hoc_A Filamin-A; calponin hom 27.8 21 0.00073 29.5 1.4 47 13-63 106-153 (272)
28 2wa7_A Filamin-B; disease muta 24.6 27 0.00092 28.0 1.4 47 13-63 79-126 (245)
No 1
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=99.77 E-value=5.9e-20 Score=136.76 Aligned_cols=63 Identities=41% Similarity=0.634 Sum_probs=59.8
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhcc
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 64 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~ 64 (168)
+||||+.|+++++.+|+++||++||++||||++|+|||| ..+.||++||||||++||++|+++
T Consensus 47 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv-~~~~pD~ksi~tYvs~~~~~f~~~ 109 (109)
T 1bkr_A 47 DLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTYYHYFSKM 109 (109)
T ss_dssp GGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHcCcCCHHHHHHHHHHHHHHHcCCCccCCHHHc-cCCCCcHHHHHHHHHHHHHHhhcC
Confidence 479999999999999999999999999999999999998 568899999999999999999875
No 2
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-19 Score=138.39 Aligned_cols=70 Identities=37% Similarity=0.544 Sum_probs=65.3
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA 71 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~ 71 (168)
+||||+.|.+.++.+|+++||++||++||||++|+|||| ..+.||++||||||++||++|++.++.+.++
T Consensus 51 ~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll~~eDv-~~~~pDeksimtYvs~l~~~~~~~~~~~~~~ 120 (127)
T 1wyq_A 51 DLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDV-NVDQPDEKSIITYVATYYHYFSKMKALAVEG 120 (127)
T ss_dssp TTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCCSCTTTS-CSSSCCHHHHHHHHHHHHHHHHHSSSCCSSC
T ss_pred CcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHh-ccCCCcHHHHHHHHHHHHHHhhcCCcccccc
Confidence 589999999999999999999999999999999999999 5688999999999999999999998876654
No 3
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=99.76 E-value=1.9e-19 Score=136.39 Aligned_cols=66 Identities=42% Similarity=0.770 Sum_probs=62.1
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ 66 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~ 66 (168)
+||||+.|+++++.+|+++||++||++||||++|+||||+..+.||++||||||++||++|++..+
T Consensus 53 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~~~pD~ksimtYvs~l~~~~~~~~p 118 (121)
T 2d88_A 53 DLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGP 118 (121)
T ss_dssp TTSCTTTSCTTCHHHHHHHHHHHHHHHTCCCCSSCHHHHHHSSCCCHHHHHHHHHHHHHHHSSCCS
T ss_pred CcCCHHHcCccCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHcccCCC
Confidence 589999999999999999999999999999999999999766789999999999999999998754
No 4
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=99.75 E-value=2.9e-19 Score=136.72 Aligned_cols=69 Identities=38% Similarity=0.605 Sum_probs=64.1
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKS 69 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~ 69 (168)
+||||+.|+++++.+|+++||++||++||||++|+||||++...||+++|||||++||++|++.....+
T Consensus 51 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~lL~peD~v~~~~pD~ksvmtYvs~l~~~~~~~~~~k~ 119 (128)
T 2d87_A 51 EAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKT 119 (128)
T ss_dssp TTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcCCHHHcCccCHHHHHHHHHHHHHHcCCCCcccCHHHHhccCCccHHHHHHHHHHHHHHHhhcccccc
Confidence 589999999999999999999999999999999999999888889999999999999999998765543
No 5
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=99.74 E-value=2.8e-19 Score=134.45 Aligned_cols=65 Identities=25% Similarity=0.393 Sum_probs=60.7
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG 67 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~ 67 (168)
+||||+.|+++++.+|+++||++||++||||++|+||||+.. ||++||||||++||++|++.+..
T Consensus 51 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~--~d~ksv~tYvs~l~~~~~~~~~~ 115 (116)
T 1wyl_A 51 GLLEPSELQGLGALEATAWALKVAENELGITPVVSAQAVVAG--SDPLGLIAYLSHFHSAFKSGPSS 115 (116)
T ss_dssp TSCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCSCHHHHHHT--SCHHHHHHHHHHHHHHSCCSCSC
T ss_pred CCCCHHHhccCCHHHHHHHHHHHHHHHcCCccccCHHHHhcC--CchhHHHHHHHHHHHHccCCCCC
Confidence 589999999999999999999999999999999999999753 99999999999999999987654
No 6
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=99.72 E-value=1.2e-18 Score=163.10 Aligned_cols=112 Identities=31% Similarity=0.484 Sum_probs=95.4
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch-hhhhcccc
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA-RCNMFVNS 79 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~-~~~~~~~~ 79 (168)
++|||+.+.+.++.+|++.||++|+++||||++|+||||++++.||++||||||++||++|++.++.++++ ++.++++.
T Consensus 165 ~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (863)
T 1sjj_A 165 ELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAV 244 (863)
T ss_dssp SSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTTTTCCCSCSTTCCTTCCCCTTT
T ss_pred CCcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999988889999999999999999999998876654 55555433
Q ss_pred ccCcchhhHHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhh
Q psy6952 80 TLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTV 119 (168)
Q Consensus 80 ~~~~~~~~~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~ 119 (168)
..+ .+++++ .|++.++.|++||+.+..++..+.
T Consensus 245 ~~~-----~e~l~~--~y~~~~~el~~Wi~~~~~~l~~~~ 277 (863)
T 1sjj_A 245 NQE-----NEQLME--DYEKLASDLLEWIRRTIPWLENRA 277 (863)
T ss_dssp HHH-----HHHHHH--HHHHHHHHHHHHHHHHGGGSSCCC
T ss_pred chh-----hHHHHH--HHHHHHHHHHHHHHHHHHHHhccC
Confidence 322 455666 678999999999999999887653
No 7
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-18 Score=131.74 Aligned_cols=66 Identities=36% Similarity=0.586 Sum_probs=61.5
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG 67 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~ 67 (168)
+||||+.+.++++.+|+++||++| ++||||++|+||||++.+.||+++|||||++||++|++.+..
T Consensus 53 ~lid~~~l~~~~~~~n~~~af~~a-~~LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~~f~~~~~~ 118 (119)
T 2d89_A 53 DLIDYKSLNPQDIKENNKKAYDGF-ASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSSGPSS 118 (119)
T ss_dssp TTSCGGGCCTTCSHHHHHHHHHHH-HHHTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHSCCCCC
T ss_pred CcCChhhhcccCHHHHHHHHHHHH-HHhCCCcccCHHHHhccCCCcHHHHHHHHHHHHHHccCCCCC
Confidence 489999999999999999999999 589999999999998777899999999999999999987764
No 8
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=99.71 E-value=4e-19 Score=134.01 Aligned_cols=66 Identities=30% Similarity=0.442 Sum_probs=57.3
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG 67 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~ 67 (168)
+||||+.|+++++.+|+++||++||++||||++|+|||| ..+.||++||||||++||++|++.+..
T Consensus 52 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv-~~~~pD~ksvmtYvs~l~~~~~~~~~~ 117 (118)
T 1bhd_A 52 DLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDV-AVRLPDKKSIIMYLTSLFEVLPQQVTI 117 (118)
T ss_dssp GGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSCHHHH-HTSCCCHHHHHHHHHHHHHHC------
T ss_pred CcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHh-hcCCCcHHHHHHHHHHHHHHCcCCCCC
Confidence 478999999999999999999999999999999999999 467899999999999999999987653
No 9
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=99.61 E-value=1.4e-16 Score=133.07 Aligned_cols=70 Identities=40% Similarity=0.640 Sum_probs=61.8
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCc
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSP 70 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~ 70 (168)
++|||+.+.+.++.+|++.||++|+++||||++|+||||++.+.||+++|||||++||++|++..+.+++
T Consensus 184 ~~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~~~~~~~~ 253 (254)
T 1wku_A 184 DLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQAETA 253 (254)
T ss_dssp TSCCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHC------
T ss_pred CcccccccCcCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhccchhhhc
Confidence 4799999999999999999999999999999999999998878899999999999999999999887765
No 10
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=99.57 E-value=6e-16 Score=134.69 Aligned_cols=64 Identities=28% Similarity=0.462 Sum_probs=59.4
Q ss_pred Cc-CCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952 2 KI-DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ 66 (168)
Q Consensus 2 LI-D~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~ 66 (168)
++ ||+.++++++.+|+++||++||++||||++|+||||+. ..|||+||||||++||+++.++..
T Consensus 182 ~~~d~~~l~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~-~~pDeksimtYvs~~~~~~~~~~~ 246 (347)
T 4b7l_A 182 LCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKAKLKPGA 246 (347)
T ss_dssp SSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTC-TTCCHHHHHHHHTTGGGCCCCTTC
T ss_pred cccchhhcCcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCC-CCCChhHHHHHHHHHhhhccCccc
Confidence 56 89999999999999999999999999999999999964 689999999999999999987643
No 11
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=99.52 E-value=1.2e-15 Score=130.93 Aligned_cols=64 Identities=36% Similarity=0.585 Sum_probs=57.9
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQK 65 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~ 65 (168)
++|||+.+.+.++.+|+++||++||++||||++|+|||+ ....||++||||||++||++|++.+
T Consensus 233 ~lid~~~l~~~~~~~N~~~Af~~Ae~~LGi~~ll~pEDi-~~~~pDeksimtyvs~ly~~fp~lp 296 (296)
T 3f7p_A 233 LLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV-DVPQPDEKSIITYVSSLYDAMPRVP 296 (296)
T ss_dssp GGCCHHHHTTSCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHTCC---
T ss_pred CccCHHHcCcccHHHHHHHHHHHHHHhCCCCccCCHHHh-cCCCCcHHHHHHHHHHHHHHCcCCC
Confidence 478999999999999999999999999999999999998 5578999999999999999998753
No 12
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=99.49 E-value=5e-15 Score=125.54 Aligned_cols=59 Identities=34% Similarity=0.525 Sum_probs=53.9
Q ss_pred CCc-CCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhh
Q psy6952 1 MKI-DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60 (168)
Q Consensus 1 ~LI-D~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~ 60 (168)
+|+ ||+.+++.++.+|++.||++||++||||++|+||||+. +.||++||||||++||++
T Consensus 211 ~li~d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~-~~pD~ksimtYvs~~~~a 270 (272)
T 3hoc_A 211 GLCPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD-PNVDKHSVMTYLSQFPKA 270 (272)
T ss_dssp TSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTC-TTCCHHHHHHHHTTCC--
T ss_pred ccccchhhcCccCHHHHHHHHHHHHHHhCCCCccCCHHHhcc-CCCChHHHHHHHHHhhcc
Confidence 467 89999999999999999999999999999999999965 689999999999999975
No 13
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=99.47 E-value=1e-14 Score=120.94 Aligned_cols=59 Identities=31% Similarity=0.485 Sum_probs=55.2
Q ss_pred CCc-CCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhh
Q psy6952 1 MKI-DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60 (168)
Q Consensus 1 ~LI-D~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~ 60 (168)
+++ ||+.++++++.+|++.||++|+++||||++|+||||+. +.||++||||||++||++
T Consensus 184 ~~i~~~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~-~~~d~ksi~tyvs~~~~~ 243 (245)
T 2wa7_A 184 GLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243 (245)
T ss_dssp TSSTTGGGSCTTCHHHHHHHHHHHHHHHSCCCCSSCHHHHTC-TTCCHHHHHHHHTHHHHC
T ss_pred cccccccccCcccHHHHHHHHHHHHHHhCCCCccCCHHHhcc-CCCcHHHHHHHHHHHhcc
Confidence 367 89999999999999999999999999999999999965 789999999999999985
No 14
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=99.44 E-value=8.2e-15 Score=121.08 Aligned_cols=67 Identities=36% Similarity=0.572 Sum_probs=57.4
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGK 68 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~ 68 (168)
++|||+.+.+.++.+|++.||++|+++||||++|+|||+ ....||+++|||||++||++|++.++.+
T Consensus 177 ~~i~~~~l~~~~~~~n~~~a~~~a~~~lGi~~~l~peDi-~~~~pd~k~i~tyva~l~~~~~~~~~~~ 243 (245)
T 1sh5_A 177 MLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV-DVPQPDEKSIITYVSSLYDAMPRVPGAQ 243 (245)
T ss_dssp TTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHHCC------
T ss_pred CCCCHHHcccCCHHHHHHHHHHHHHHhCCCCccCCHHHh-ccCCCcHHHHHHHHHHHHHHcCCCCCCC
Confidence 478999999999999999999999999999999999999 4568999999999999999999876543
No 15
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=99.37 E-value=3.7e-14 Score=117.51 Aligned_cols=65 Identities=37% Similarity=0.510 Sum_probs=58.6
Q ss_pred CCcCCccCC-CcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952 1 MKIDFASLD-QRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ 66 (168)
Q Consensus 1 ~LID~dsL~-~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~ 66 (168)
+++||+.+. +.++.+|++.||++|+++||||++|+|||++ ...||+++|||||+++|++|++.+.
T Consensus 179 ~li~~~~~~~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~-~~~pD~k~i~tyva~l~~~~~~~~~ 244 (246)
T 1dxx_A 179 DLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVD-TTYPDKKSILMYITSLFQVLPQQVS 244 (246)
T ss_dssp GGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCCHHHHS-SSSCCHHHHHHHHHHHHTTSCCCEE
T ss_pred CccchhhhcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhh-cCCCcHHHHHHHHHHHHHHccCCCC
Confidence 368888886 7899999999999999999999999999995 5789999999999999999987653
No 16
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=99.09 E-value=4.4e-11 Score=108.18 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=57.4
Q ss_pred CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCC
Q psy6952 1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKS 69 (168)
Q Consensus 1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~ 69 (168)
+++||+.++++++.+|++.||++|++ ||||++|+||||+. ||++++||||+++|++|++.++...
T Consensus 206 ~~i~~~~l~~~~~~~n~~~a~~~a~~-lgi~~~l~peDi~~---~~~k~il~yva~l~~~~~~~~~~~~ 270 (513)
T 1rt8_A 206 ELCSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLTPTAMVA---GNPKLNLAFVAHLFNTHPGLEPLNE 270 (513)
T ss_dssp TTCCSGGGGCCCHHHHHHHHHHHHHT-TTCCCSCCHHHHHT---TCHHHHHHHHHHHHHHCCCCCC---
T ss_pred cccccCCCCccCHHHHHHHHHHHHHH-cCCCccCCHHHhcC---CCHHHHHHHHHHHHhhhcccCcccc
Confidence 47899999999999999999999987 99999999999964 7899999999999999998875543
No 17
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=99.04 E-value=3.6e-11 Score=108.50 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=52.6
Q ss_pred CCcCCccCCCc----ChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhc
Q psy6952 1 MKIDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVN 63 (168)
Q Consensus 1 ~LID~dsL~~~----~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~ 63 (168)
++|||+.+.+. ++.+|++.||++|+ +||||++|+|||++. ||++||||||++||++|.+
T Consensus 443 ~li~~~~l~~~~s~~~~~~N~~~a~~~a~-~lGi~~~l~peDi~~---~d~ksi~tyv~~l~~~~~~ 505 (506)
T 1pxy_A 443 RVVNWNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLLPEDIVE---VNQKMILILTASIMYWSLQ 505 (506)
T ss_dssp GGCCTTSCCCSCSHHHHHHHHHHHHHHHH-HHTCCCCCCHHHHHT---TCHHHHHHHHHHHHHHHTT
T ss_pred CeeehhhcccCCCchhHHHHHHHHHHHHH-HcCCCCcCCHHHccC---CChhHHHHHHHHHHHHHhh
Confidence 37899999874 57899999999996 699999999999963 6999999999999999864
No 18
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=98.93 E-value=3.3e-10 Score=102.25 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=55.4
Q ss_pred CcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCC
Q psy6952 2 KIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGK 68 (168)
Q Consensus 2 LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~ 68 (168)
++||+.++++++.+|++.||++|+ +||||++++||||+. ++++++||||+++|++|++.+...
T Consensus 198 ~i~~~~l~~~~~~~n~~~a~~~a~-~lGi~~~l~peDi~~---~~~k~v~tyva~l~~~~~~~~~~~ 260 (506)
T 1pxy_A 198 HCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAEEIVE---GSSTLNLAFVAQIFHERNGLNKDG 260 (506)
T ss_dssp GCCGGGGGCCSHHHHHHHHHHHHH-HTTCCCCCCHHHHHT---TCHHHHHHHHHHHHHHCCCCC---
T ss_pred ccccccCCcCCHHHHHHHHHHHHH-HcCCCCcCCHHHHhc---CChhHHHHHHHHHhhhcCCCCCcc
Confidence 689999999999999999999998 599999999999964 466999999999999999876543
No 19
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=98.93 E-value=2.7e-10 Score=86.93 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCcCCc-----cCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952 1 MKIDFA-----SLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG 67 (168)
Q Consensus 1 ~LID~d-----sL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~ 67 (168)
.+|||+ .|+..++.+|.+.||++|+ ++|++.+|.|||+++. ++|+|||||+++++++-+.+..
T Consensus 53 ~~vd~~lv~~~~L~~~d~~~Na~~ais~Ar-klG~~~~l~pEDIve~---~pK~ilt~va~l~~~~~~~~~~ 120 (124)
T 1wjo_A 53 GCINYDLVKSGNLTEDDKHNNAKYAVSMAR-RIGARVYALPEDLVEV---KPKMVMTVFACLMGRGMKRVSG 120 (124)
T ss_dssp TSCCTTTSCCSSCCHHHHHHHHHHHHHHHH-HTCCSCCCCHHHHHHT---CTTTTTHHHHHHHHHSCCCCCC
T ss_pred CccCHHHhcCCCCCHHHHHHHHHHHHHHHH-HcCCCcccCHHHHhcC---cchhhHHHHHHHHHHHhhccCC
Confidence 367888 6677889999999999996 6999999999999874 5699999999999987665443
No 20
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=98.90 E-value=2e-10 Score=103.93 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=48.5
Q ss_pred CCcCCccCCCc----ChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhh
Q psy6952 1 MKIDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ 59 (168)
Q Consensus 1 ~LID~dsL~~~----~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~ 59 (168)
++|||+.+.+. ++.+|++.||++|+ +||||++|+||||+.. +++||||||++||+
T Consensus 454 ~~i~~~~l~~~~~~~~~~~n~~~af~~A~-~lGi~~~l~peDi~~~---~pksi~tyva~l~~ 512 (513)
T 1rt8_A 454 EYVDYNLVTDGSTEELAIQNARLAISIAR-KLGAVIFILPEDIVAV---RPRLVLHFIGSLMA 512 (513)
T ss_dssp GGCCGGGCCCCCSHHHHHHHHHHHHHHHH-HTTCCCCCCHHHHHTT---CHHHHHHHHHHHHT
T ss_pred CcCCHHhhccccChhhHHHHHHHHHHHHH-HcCCCccCCHHHhcCC---CcccHHHHHHHHHh
Confidence 47899999875 79999999999997 5999999999999653 45999999999986
No 21
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=97.26 E-value=2.4e-05 Score=65.27 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=34.3
Q ss_pred ChhhhHHHHHHHH--HHhcCCCcccCccccccCCCCCccceeeecchhhh
Q psy6952 12 NIYSNNELAFRTA--ERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ 59 (168)
Q Consensus 12 ~~~eNl~lAF~vA--E~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~ 59 (168)
+.....+.|-.+. .++||||++|+||||+ .||++++||||+++|+
T Consensus 229 ~~~~~~~n~~~a~~~A~~lGi~~~l~peDi~---~~~~k~i~tyva~Lfn 275 (275)
T 1aoa_A 229 NETDDLKRAESMLQQADKLGCRQFVTPADVV---SGNPKLNLAFVANLFN 275 (275)
T ss_dssp TCSSHHHHHHHHHHHHTTTTCCCSCCHHHHH---TTCHHHHHHHHHHHHC
T ss_pred CccCHHHHHHHHHHHHHHcCCCCcCCHHHcC---CCChhHHHHHHHHHhC
Confidence 3444455544333 3589999999999996 4899999999999985
No 22
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=94.35 E-value=0.026 Score=46.51 Aligned_cols=30 Identities=13% Similarity=-0.074 Sum_probs=25.1
Q ss_pred HHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhh
Q psy6952 88 QVHLIRSAGQLNLSSLLISMIAEGSAWSAYTV 119 (168)
Q Consensus 88 ~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~ 119 (168)
.+.+++ +|++++++|++||++++.|++++.
T Consensus 9 ~e~~~~--eYe~~as~Ll~WI~~~~~~l~~r~ 38 (235)
T 2odv_A 9 LQLRWQ--EYRELVLLLLQWMRHHTAAFEERR 38 (235)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355665 789999999999999999998875
No 23
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=62.00 E-value=3.3 Score=30.73 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=39.5
Q ss_pred cChhhhHHHHHHHHHHhcCCC-cccCccccccCCCCCccceeeecchhhhhhhc
Q psy6952 11 RNIYSNNELAFRTAERHLGIP-ALLDAEDMVEYAVPDRLSILTYLSQFYQVFVN 63 (168)
Q Consensus 11 ~~~~eNl~lAF~vAE~~LGIp-~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~ 63 (168)
....+|++.|++.+++ .|+. .-..|+|+++ -+.+.++..+-+++.+|..
T Consensus 80 ~~kieNv~~aL~~lk~-~gi~l~~I~~~DIvd---Gn~kliLgLiW~li~~~~~ 129 (131)
T 2vzc_A 80 EQKVLNVSFAFELMQD-GGLEKPKPRPEDIVN---CDLKSTLRVLYNLFTKYRN 129 (131)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCCSSCHHHHHT---TCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH-cCCCcCCCCHHHhhC---CCHHhHHHHHHHHHHHHhc
Confidence 3468999999999975 7996 4689999976 5788998888888777754
No 24
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.84 E-value=3.2 Score=30.35 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=41.6
Q ss_pred cChhhhHHHHHHHHHHhcCCCc-ccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952 11 RNIYSNNELAFRTAERHLGIPA-LLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ 66 (168)
Q Consensus 11 ~~~~eNl~lAF~vAE~~LGIp~-lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~ 66 (168)
-...+|+..|++.++ ..|++. =+.++|+++ -+.+.++..+-+++.+|....+
T Consensus 76 ~~~~eNv~~aL~~~~-~~gv~~~~i~~~DI~d---gn~~~iL~Llw~L~r~~q~~~~ 128 (129)
T 2yrn_A 76 SQMIENIDACLNFLA-AKGINIQGLSAEEIRN---GNLKAILGLFFSLSRYKQQQQQ 128 (129)
T ss_dssp THHHHHHHHHHHHHH-HHTCCCTTCCHHHHHH---TCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHH-HhCCcccCCChhhhhc---CCHhHHHHHHHHHHHHHhhhcC
Confidence 345899999999996 589874 468999975 5788999988888888876544
No 25
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=47.19 E-value=11 Score=32.07 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHHHHhcCCCc-ccCccccccCCCCCccceeeecchhhhhhhc
Q psy6952 13 IYSNNELAFRTAERHLGIPA-LLDAEDMVEYAVPDRLSILTYLSQFYQVFVN 63 (168)
Q Consensus 13 ~~eNl~lAF~vAE~~LGIp~-lLdpED~~~~~~PDekSVmTYVs~~y~~f~~ 63 (168)
..+|++.|++.++ ..|+.- =..++|+++ -+.+.++.-+-++..+|.-
T Consensus 76 k~eNv~~al~~~~-~~g~~lv~i~~~DIvd---Gn~~liLgLiW~li~~~~i 123 (347)
T 4b7l_A 76 QLENVSVALEFLD-RESIKLVSIDSKAIVD---GNLKLILGLVWTLILHYSI 123 (347)
T ss_dssp HHHHHHHHHHHHH-HTTCCCSSCCHHHHHT---TCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhccccCCCCcchhhc---CCHhhHHHHHHHHHHHHhh
Confidence 4799999999996 578863 488999976 5788999888888888864
No 26
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=46.74 E-value=18 Score=30.80 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.5
Q ss_pred HHHHHHhhHHhHHHHHHHHHHhhhhhhhhh
Q psy6952 89 VHLIRSAGQLNLSSLLISMIAEGSAWSAYT 118 (168)
Q Consensus 89 ~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~ 118 (168)
+.+++ .|++.++.|+.||+.+.+++...
T Consensus 10 ~~~~~--~y~~~~~~ll~Wi~~~~~~l~~~ 37 (476)
T 1hci_A 10 ERLME--EYERLASELLEWIRRTIPWLENR 37 (476)
T ss_dssp HHHHH--HHHHHHHHHHTHHHHHHHHTTCC
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHhcC
Confidence 44554 78899999999999999999863
No 27
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=27.80 E-value=21 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHhcCCCcc-cCccccccCCCCCccceeeecchhhhhhhc
Q psy6952 13 IYSNNELAFRTAERHLGIPAL-LDAEDMVEYAVPDRLSILTYLSQFYQVFVN 63 (168)
Q Consensus 13 ~~eNl~lAF~vAE~~LGIp~l-LdpED~~~~~~PDekSVmTYVs~~y~~f~~ 63 (168)
..+|++.|++.++ ..|+.-. +.++|+++ -+.+.++.-+-+++.+|.-
T Consensus 106 kleNv~~aL~~lk-~~gv~lvnI~~~DIvd---Gn~kliLgLlW~Li~~~~i 153 (272)
T 3hoc_A 106 QLENVSVALEFLD-RESIKLVSIDSKAIVD---GNLKLILGLIWTLILHYSI 153 (272)
T ss_dssp HHHHHHHHHHHHH-HTTCCCSSCCHHHHHT---TCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HcCCcccccccchhhc---CCHHHHHHHHHHHHHHHhh
Confidence 5899999999997 6899753 78999975 4788898888888877763
No 28
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=24.60 E-value=27 Score=27.98 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHhcCCCcc-cCccccccCCCCCccceeeecchhhhhhhc
Q psy6952 13 IYSNNELAFRTAERHLGIPAL-LDAEDMVEYAVPDRLSILTYLSQFYQVFVN 63 (168)
Q Consensus 13 ~~eNl~lAF~vAE~~LGIp~l-LdpED~~~~~~PDekSVmTYVs~~y~~f~~ 63 (168)
..+|++.|++.++ ..|++.. +.++|+++ -+.+.++.-+-++..+|.-
T Consensus 79 ~~eNv~~aL~~~k-~~g~~lv~I~~~DIvd---G~~kliLgLlW~li~~~~i 126 (245)
T 2wa7_A 79 QLENVSVALEFLD-RESIKLVSIDSKAIVD---GNLKLILGLVWTLILHYSI 126 (245)
T ss_dssp HHHHHHHHHHHHH-HTTCCCCSCCHHHHHT---TCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HcCCcccCCCHHHhhC---CCHHHHHHHHHHHHHHHcc
Confidence 5899999999986 5799743 68999975 4788898888888777754
Done!