RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6952
(168 letters)
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain. The CH domain is
found in both cytoskeletal proteins and signal
transduction proteins. The CH domain is involved in
actin binding in some members of the family. However in
calponins there is evidence that the CH domain is not
involved in its actin binding activity. Most member
proteins have from two to four copies of the CH domain,
however some proteins such as calponin have only a
single copy.
Length = 104
Score = 53.1 bits (128), Expect = 7e-10
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 2 KIDFASLDQRNIYS--NNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ 59
ID +++ N LA AE+ LG+P +L+ ED+VE + +LT L+Q ++
Sbjct: 44 LIDLKKVNKNRFDKLENLNLALEFAEKKLGVPKVLEPEDLVE--DGNEKLVLTLLAQLFR 101
Query: 60 VF 61
F
Sbjct: 102 RF 103
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin
(EF-Hand superfamily) [Cytoskeleton].
Length = 612
Score = 47.6 bits (113), Expect = 8e-07
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 16 NNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
NN AF A + +GI L+ ED+V ++PD SI+TY+S + F
Sbjct: 187 NNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRF 232
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which
may be present as a single copy or in tandem repeats
(which increases binding affinity). The CH domain is
found in cytoskeletal and signal transduction proteins,
including actin-binding proteins like spectrin,
alpha-actinin, dystrophin, utrophin, and fimbrin,
proteins essential for regulation of cell shape
(cortexillins), and signaling proteins (Vav).
Length = 107
Score = 40.0 bits (94), Expect = 6e-05
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 16 NNELAFRTAERHLGIP-ALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
N LA AE LG+P DAED+VE D +L L + F
Sbjct: 63 NINLALNFAE-KLGVPVVNFDAEDLVED--GDEKLVLGLLWSLIRKF 106
>gnl|CDD|214479 smart00033, CH, Calponin homology domain. Actin binding domains
present in duplicate at the N-termini of spectrin-like
proteins (including dystrophin, alpha-actinin). These
domains cross-link actin filaments into bundles and
networks. A calponin homology domain is predicted in
yeasst Cdc24p.
Length = 101
Score = 34.2 bits (79), Expect = 0.007
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 6 ASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
ASL + N LA AE+ G L + ED+VE L ++ L
Sbjct: 51 ASLSRFKKIENINLALSFAEKLGGKVVLFEPEDLVE-GPKLILGVIWTLISL 101
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 29.6 bits (66), Expect = 0.82
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 42 YAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTL-RPATHYQVHLIRSAG 96
Y P +L +L++F++V + P RC++ V R +V +I +G
Sbjct: 289 YVFPYHTELLEHLTRFHKVNARLSEIPRPGRCSIPVMDPFKRKKAPARVSVIDPSG 344
>gnl|CDD|130870 TIGR01811, sdhA_Bsu, succinate dehydrogenase or fumarate reductase,
flavoprotein subunit, Bacillus subtilis subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in the low-GC
Gram-positive bacteria and a few other lineages. This
enzyme may act in a complete or partial TCA cycle, or
act in the opposite direction as fumarate reductase. In
some but not all species, succinate dehydrogenase and
fumarate reductase may be encoded as separate isozymes
[Energy metabolism, TCA cycle].
Length = 603
Score = 28.7 bits (64), Expect = 1.9
Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 36/159 (22%)
Query: 4 DFASLDQRNIYSNNELAFRTAERHLGIP----ALLDAEDMVEYAVPDRLSI-LTYLSQFY 58
F +L R+I S + P LD D E + L + Y
Sbjct: 289 AFGNLVPRDIASR-AIFQVCDAGKGVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMY 347
Query: 59 QVFVNQKQGKSPARCNMFVNSTLRPATHY-------------QVHLIRSAGQLNLS---- 101
+ F K P R + PA HY + + +AG+ + S
Sbjct: 348 EKFTGDDPYKVPMR--------IFPAVHYTMGGLWVDYDQMTNIPGLFAAGECDFSQHGA 399
Query: 102 -----SLLISMIAEGSAWSAYTVRNIGSSSPNSKILPDS 135
+ L+S IA+G +T+ N +S+ +P+
Sbjct: 400 NRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPED 438
>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase.
Length = 536
Score = 28.1 bits (63), Expect = 2.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 90 HLI-RSAGQLNLSSLLISMIAEGSAWSAYTVRN-IGSSSPNSKILPDSPTTP 139
HLI R +L + SLL+S A ++ R I S P+S + +PT P
Sbjct: 24 HLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVEGAPTVP 75
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional.
Length = 559
Score = 27.7 bits (62), Expect = 4.0
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 10 QRNIYSNNELAFRTAER-HLGIPALL 34
RN + N AF ER HLGI LL
Sbjct: 23 LRNRFLNKGTAFTAEEREHLGIEGLL 48
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase;
Provisional.
Length = 322
Score = 27.3 bits (60), Expect = 4.8
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 8 LDQRNIYS-NNELAFRTAERHLGIPALLDAEDMVEYAVPDRL--SILTYLSQFY------ 58
L+++ I +N L E IP D ED +Y D + L +
Sbjct: 174 LEEKKILCGSNILTDPIKEGTFAIP---DDEDECDY--LDHELENERIDLDLKFDGDCIC 228
Query: 59 --QVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAE 110
+ F+N++Q + + S L P LIR++G+ LS ++ I+E
Sbjct: 229 GEKSFLNEEQIEIVNYHKKLLTSDLPPPNI----LIRTSGEKRLSDFMLYQISE 278
>gnl|CDD|223457 COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate
transport and metabolism].
Length = 486
Score = 26.9 bits (60), Expect = 5.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 74 NMFVNSTLRPATHYQV 89
N F N+ L P HY +
Sbjct: 102 NGFSNAILWPLFHYFI 117
>gnl|CDD|150340 pfam09640, DUF2027, Domain of unknown function (DUF2027). This
protein domain is of unknown function. though putatively
involved in DNA mismatch repair. It is associated with
pfam01713.
Length = 162
Score = 25.9 bits (57), Expect = 8.2
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 107 MIAEGSAWSAYTVRNIGSSSPNSKIL 132
+ AEG +W +R+ G PN+K+
Sbjct: 37 LSAEGKSW---KIRSHGLIEPNTKLF 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.383
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,447,143
Number of extensions: 733031
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 19
Length of query: 168
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 78
Effective length of database: 6,945,742
Effective search space: 541767876
Effective search space used: 541767876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)